ID:

dsi_164

 Coordinate:

2r:2415828-2415903 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-17.1 -16.4 -16.1

Flybase annnotation

intergenic

Repeatable elements

NameClassFamilyStrand
Mariner2_DMDNATcMar-Tc1+
mature
  1. dsi_164  2r:2415883-2415903 -
  2. x:20762482-20762502 +
  3. node_84541:686-706 +
  4. node_7385:404-424 -
star
  1. 2l:21626580-21626597 +
  2. dsi_164  2r:2415857-2415874 -
  3. node_84541:715-732 +
  4. node_7385:378-395 -
  5. node_19608:1229-1246 +

Sense Strand Reads

TTTTATTTTTTTTGAAGATGGCTTACATCGGTTTACACTACGTAAACCGATTTCTGGCGTTTGTCGTGACTCTTGTTAGCATAGCAGGTGTTATGTTGGCCATTTCTTCTTGGACGTTGGATTTCAAATCTTGTAGGGTTTTTGGACGGTTCACATAAACACAGTATTTAAAAAAA
***********************************...................((((......((((((.(((((((...))))))).))))))...))))..........**************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 M023
head
 SRR553485
Chicharo_3 day-old ovaries
 SRR902008
ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 M025
embryo
 SRR553487
NRT_0-2 hours eggs
 O002
Head
 M053
female body
 M024
male body		 SRR902009
testis
..................................................TTTCTGGCGTTTGTCGTGACT......................................................................................................... 21 0 4 2.00 8 0 5 0 0 0 0 1 0 0 0 2 0
...................................................TTCTGGCGTTTGTCGTGACT......................................................................................................... 20 0 4 1.25 5 0 5 0 0 0 0 0 0 0 0 0 0
..............................................................GTCGTGACTCTTGTTAGCATAGCA.......................................................................................... 24 0 5 1.00 5 0 0 0 5 0 0 0 0 0 0 0 0
......................................................TGGCGTTTGTCGTGACTCTTGTTAGT................................................................................................ 26 1 3 1.00 3 0 0 0 0 0 3 0 0 0 0 0 0
...............................................................................CATAGCAGGTGTTATGTT............................................................................... 18 0 5 1.00 5 0 0 0 0 0 0 0 0 5 0 0 0
..............................................................................................................................................TGGACGGTTCACATAAACACAGT........... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
......................................TACGTAAACCGATTTCTGGCGTTTG................................................................................................................. 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................TTTCAAATCTTGTAGGGTTTTTGGA.............................. 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................TTGTAGGGTTTTTGGACGGTTCACATAAA................. 29 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.................................................ATTTCTGGCGTTTGTCGTGACT......................................................................................................... 22 0 4 0.75 3 0 1 0 0 0 0 2 0 0 0 0 0
................................................................CGTGACTCTTGTTAGCATAGCAGG........................................................................................ 24 0 3 0.67 2 1 0 0 0 0 0 0 0 0 1 0 0
......................................................TGGCGTTTGTCGTGACTCTTGTTAGCAT.............................................................................................. 28 0 3 0.67 2 0 0 0 1 1 0 0 0 0 0 0 0
............................................................TTGTCGTGACTCTTGTTAGCA............................................................................................... 21 0 5 0.60 3 0 0 0 0 0 0 1 2 0 0 0 0
...................................................TTCTGGCGTTTGTCGTGACTCT....................................................................................................... 22 0 4 0.50 2 0 2 0 0 0 0 0 0 0 0 0 0
..................................................TTTCTGGCGTTTGTCGTGACC......................................................................................................... 21 1 4 0.50 2 0 1 0 0 0 0 0 0 0 0 1 0
...................................................................................GCAGGTGTTATGTTGGCCATT........................................................................ 21 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0
............................................................TTGTCGTGACTCTTGTTAGCATAGCAGG........................................................................................ 28 0 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0 0
................................................................CGTGACTCTTGTTAGCATA............................................................................................. 19 0 6 0.50 3 3 0 0 0 0 0 0 0 0 0 0 0
...............................................................................CATAGCAGGTGTTATGTTGGC............................................................................ 21 0 5 0.40 2 0 0 0 0 0 0 0 1 0 1 0 0
...........................................AAACCGATTTCTGGCGTTTGTCGTGAC.......................................................................................................... 27 0 3 0.33 1 0 0 0 1 0 0 0 0 0 0 0 0
..........................................................GTTTGTCGTGACTCTTGTTAGCATA............................................................................................. 25 0 3 0.33 1 0 0 1 0 0 0 0 0 0 0 0 0
............................................AACCGATTTCTGGCGTTTGTCGTGACT......................................................................................................... 27 0 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................................TGTTAGCATAGCAGGTGTTATGTTGGC............................................................................ 27 0 3 0.33 1 0 0 0 0 0 0 0 0 0 1 0 0
.........................................................................TGTTAGCATAGCAGGTGTTATG................................................................................. 22 0 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0
....................................................TCTGGCGTTTGTCGTGACTCTTGTTAGC................................................................................................ 28 0 3 0.33 1 0 0 0 0 0 0 0 1 0 0 0 0
.........................................................................TGTTAGCATAGCAGGTGTTATGTA............................................................................... 24 1 3 0.33 1 0 0 0 0 0 0 0 1 0 0 0 0
........................................................................TTGTTAGCATAGCAGGTGTTATGT................................................................................ 24 0 3 0.33 1 0 0 0 0 1 0 0 0 0 0 0 0
..........................................TAAACCGATTTCTGGCGTTTGTCGTGAC.......................................................................................................... 28 0 3 0.33 1 0 0 1 0 0 0 0 0 0 0 0 0
.......................................................GGCGTTTGTTGTGACTCTTATTAGCGTA............................................................................................. 28 3 3 0.33 1 0 0 0 0 0 1 0 0 0 0 0 0
........................................................GCGTTTGTCGTGACTCTTGTCAGCATA............................................................................................. 27 1 3 0.33 1 0 0 0 0 1 0 0 0 0 0 0 0
.......................................................GGCGTTTGTCGTGACTCTTGTTAGCATA............................................................................................. 28 0 3 0.33 1 0 0 0 1 0 0 0 0 0 0 0 0
.............................................................................................................................................TTGGACTGTTCACATGAAC................ 19 2 4 0.25 1 0 0 0 0 0 0 1 0 0 0 0 0
.....................................................CTGGCGTTTGTCGTGACTCTT...................................................................................................... 21 0 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................GGCGTTTGTCGTGACT......................................................................................................... 16 0 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0
.............................................ACCGGGTTCTTGCGTTTGT................................................................................................................ 19 3 16 0.25 4 0 0 0 0 0 4 0 0 0 0 0 0
..................................................TTTCTGGCGTTTGTCGTGGCTC........................................................................................................ 22 1 4 0.25 1 0 0 0 0 0 0 1 0 0 0 0 0
......................................................TGGCGTTTGTCGTGACTCTTGT.................................................................................................... 22 0 4 0.25 1 0 0 0 1 0 0 0 0 0 0 0 0
....................................................TCTGGCGTTTGTCGTGAC.......................................................................................................... 18 0 4 0.25 1 0 1 0 0 0 0 0 0 0 0 0 0
...................................................TTCTGGCGTTTGTCGTGACTCTTGT.................................................................................................... 25 0 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0
................................................................................ATAGCAGGTGTTATGTTGGCG........................................................................... 21 1 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 1
..............................................................GTCGTGACTCTTGTTAGCATAGC........................................................................................... 23 0 5 0.20 1 0 0 0 1 0 0 0 0 0 0 0 0
...........................................................TTTGTCGTGACTCTTGTTAGCATAGCA.......................................................................................... 27 0 5 0.20 1 0 0 1 0 0 0 0 0 0 0 0 0
..............................................................GTCGTGACTCTTGTTAGCATAGCAA......................................................................................... 25 1 5 0.20 1 0 0 0 1 0 0 0 0 0 0 0 0
...........................................................TTTGTCGTGACTCTTGTTAGT................................................................................................ 21 1 5 0.20 1 0 0 0 0 0 1 0 0 0 0 0 0
.................................................ATTTCTGGCGTTTGTCGTGA........................................................................................................... 20 0 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0 0
...........................................................TTTGTCGTGACTCTTGTTAGC................................................................................................ 21 0 5 0.20 1 0 0 1 0 0 0 0 0 0 0 0 0
...................................................TTCTGGCGTTTGTCGTG............................................................................................................ 17 0 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0 0
....................................................TATGGCGTTTGTCGTGACTCTTGTTA.................................................................................................. 26 1 5 0.20 1 0 0 0 0 1 0 0 0 0 0 0 0
............................................................TTGTCGTGACTCTTGTTAGCATAGCA.......................................................................................... 26 0 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0 0
.............................................................TGTCGTGACTCTTGTTAGTGA.............................................................................................. 21 3 6 0.17 1 0 0 0 0 1 0 0 0 0 0 0 0
.........................................................................................................................................................TCTAAACACAGTACTTAAAAA.. 21 3 14 0.07 1 0 0 0 0 1 0 0 0 0 0 0 0
..TTTTTTTCTTTGAAGATGGCC......................................................................................................................................................... 21 3 15 0.07 1 0 0 0 0 1 0 0 0 0 0 0 0
........................................................................................................TCTTCTTAGACGTTGCATT..................................................... 19 2 15 0.07 1 0 0 0 0 0 0 0 0 0 1 0 0
.....TTTTGTTTGAAGGTGGCTTC....................................................................................................................................................... 20 3 16 0.06 1 0 0 0 0 0 0 0 0 0 0 1 0

Anti-sense strand reads

AAAATAAAAAAAACTTCTACCGAATGTAGCCAAATGTGATGCATTTGGCTAAAGACCGCAAACAGCACTGAGAACAATCGTATCGTCCACAATACAACCGGTAAAGAAGAACCTGCAACCTAAAGTTTAGAACATCCCAAAAACCTGCCAAGTGTATTTGTGTCATAAATTTTTTT
****************************************************************...................((((......((((((.(((((((...))))))).))))))...))))..........*********************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
 M053
female body
 M025
embryo
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 O002
Head
 SRR902008
ovaries
 M023
head
 SRR553486
Makindu_3 day-old ovaries
......................................................................................CCACAATACAACCGGTAAAGAAGAAC................................................................ 26 0 1 5.00 5 5 0 0 0 0 0 0 0 0 0
.................................................TAAAGACCGCAAACAGCACTGAGAA...................................................................................................... 25 0 4 3.50 14 10 0 2 1 0 0 0 1 0 0
..................................................AAAGACCGCAAACAGCACTGAGAA...................................................................................................... 24 0 4 1.25 5 5 0 0 0 0 0 0 0 0 0
..............................................................................................................................TTAGAACATCCCAAAAACCTGCCAA......................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.............................CCAGATGTGATGCCTTTG................................................................................................................................. 18 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................GTTAGAACATCCCAAAAACCTGCCAA......................... 26 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0
.........................................................GCAAACAGCACTGAGAACAAT.................................................................................................. 21 0 3 1.00 3 0 0 0 0 0 0 3 0 0 0
..................................................................................................CGGTAAAGAAGAACCTGCAACCTAAAGTT................................................. 29 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
............................................TTGGCTAAAGACCGCAAACAGCACTGAG........................................................................................................ 28 0 3 1.00 3 0 3 0 0 0 0 0 0 0 0
...........................................................................................................AGAACCTGCAACCTAAAGTTTAGAACAT......................................... 28 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
............................................................................................................................................AAACCTGCCAAGTGTATTTGTGTCCT.......... 26 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0
................................................................................................................................AGAACATCCCAAAAACCTGCCAA......................... 23 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
.............................CCAAATGTGATGCCTTTG................................................................................................................................. 18 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..............................................GGCTAAAGACCGCAAACAGCACTG.......................................................................................................... 24 0 3 1.00 3 0 3 0 0 0 0 0 0 0 0
............................................................................................................GAACCTGCAACCTAAAGTTTAGAAC........................................... 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
..............................................................................................................................TTAGAACATCCCAAAAACCTGCCAAGTGT..................... 29 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..................ACCGAATGTAGCCAAATGTGATGCAT.................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
....................CGAATGTAGCCAAATGTGATGCATT................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.................................ATGTGATGCCTTTGGCCA............................................................................................................................. 18 2 6 0.83 5 5 0 0 0 0 0 0 0 0 0
...........................................................AAACAGCACTGAGAACAATCGTAT............................................................................................. 24 0 5 0.80 4 1 0 0 3 0 0 0 0 0 0
........................................................CGCAAACAGCACTGAGAA...................................................................................................... 18 0 4 0.75 3 3 0 0 0 0 0 0 0 0 0
............................................TTGGCTAAAGACCGCAAACAGCACTG.......................................................................................................... 26 0 3 0.67 2 0 2 0 0 0 0 0 0 0 0
................................................CTAAAGACCGCAAACAGCACTGAGAA...................................................................................................... 26 0 3 0.67 2 1 0 0 1 0 0 0 0 0 0
...................................................AAGACCGCAAACAGCACTGAGAA...................................................................................................... 23 0 4 0.50 2 2 0 0 0 0 0 0 0 0 0
..........................................................CAAACAGCACTGAGAA...................................................................................................... 16 0 4 0.50 2 2 0 0 0 0 0 0 0 0 0
..............................CGAATGTGATGCCTTTG................................................................................................................................. 17 2 4 0.50 2 2 0 0 0 0 0 0 0 0 0
..............................................................................................................................TTAGAACATCTCAAAAACCTGCCAA......................... 25 1 5 0.40 2 0 0 0 2 0 0 0 0 0 0
.............................CCAGATGTGATGCTTTTG................................................................................................................................. 18 2 3 0.33 1 0 0 0 0 0 0 0 0 1 0
...............................................GCTAAAGACCGCAAACAGCACTGAGAA...................................................................................................... 27 0 3 0.33 1 1 0 0 0 0 0 0 0 0 0
..............................................TGCTAAAGACCGCAAACAGCACTGAGAA...................................................................................................... 28 1 3 0.33 1 1 0 0 0 0 0 0 0 0 0
.............................................................ACTGCACTGAGAACAATCGTATCGT.......................................................................................... 25 1 6 0.33 2 0 0 0 0 2 0 0 0 0 0
....................................................AGACCGCAAACAGCACTGAGAACAAT.................................................................................................. 26 0 3 0.33 1 0 1 0 0 0 0 0 0 0 0
............................................ATGGCTAAAGACCGCAAACAGCACTGAG........................................................................................................ 28 1 3 0.33 1 0 1 0 0 0 0 0 0 0 0
.............................................TGGCTAAAGACCGCAAACAGCACTG.......................................................................................................... 25 0 3 0.33 1 0 1 0 0 0 0 0 0 0 0
.......................................................CCGCAAACAGCACTGAGAACAAT.................................................................................................. 23 0 3 0.33 1 1 0 0 0 0 0 0 0 0 0
............................................TTGGCTAAAGACCGCAAACAGCACTGAGA....................................................................................................... 29 0 3 0.33 1 0 0 0 0 1 0 0 0 0 0
..............................................GGCTAAAGACCGCAAACAGCACTGAG........................................................................................................ 26 0 3 0.33 1 0 1 0 0 0 0 0 0 0 0
................................................................................................................ATGCAACCTAAAGTTT................................................ 16 1 3 0.33 1 1 0 0 0 0 0 0 0 0 0
...........................................................AAACAGCACTGAGAA...................................................................................................... 15 0 6 0.33 2 2 0 0 0 0 0 0 0 0 0
......................................................ACCGCAAACAGCACTGAGAACAATCACT.............................................................................................. 28 3 3 0.33 1 0 0 0 0 0 1 0 0 0 0
............................................TTGGCTAAAGACCGGAAACAGCACT........................................................................................................... 25 1 3 0.33 1 0 0 0 0 1 0 0 0 0 0
.............................................TGGCTAAAGACCGCAAACAGCACTGAG........................................................................................................ 27 0 3 0.33 1 0 1 0 0 0 0 0 0 0 0
........................................................CGCAAACAGCACTGAGAACAATCGTAT............................................................................................. 27 0 3 0.33 1 1 0 0 0 0 0 0 0 0 0
.................................ATGTGATGCCTTTGGCG.............................................................................................................................. 17 2 13 0.31 4 4 0 0 0 0 0 0 0 0 0
....................................................AGACCGCAAACAGCACTGA......................................................................................................... 19 0 4 0.25 1 0 1 0 0 0 0 0 0 0 0
.................................................AAAAGACCGCAAACAGCACTGAGAA...................................................................................................... 25 1 4 0.25 1 1 0 0 0 0 0 0 0 0 0
....................................................AGACCGCAAACAGCACTGAGAAC..................................................................................................... 23 0 4 0.25 1 0 1 0 0 0 0 0 0 0 0
........................................................CGCAAACAGCACTGAGAACAA................................................................................................... 21 0 4 0.25 1 1 0 0 0 0 0 0 0 0 0
..................................................AAAGACCGCAAACAGCACTGAGAACG.................................................................................................... 26 1 4 0.25 1 0 0 1 0 0 0 0 0 0 0
.................................................TAAAGACCGCGGACAGCACTG.......................................................................................................... 21 2 4 0.25 1 0 0 1 0 0 0 0 0 0 0
......................................................TCCGCAAACAGCACTGAGAGC..................................................................................................... 21 2 4 0.25 1 0 0 0 0 0 0 0 0 1 0
....................................................AGACCGCAAACAGCACTGAGAA...................................................................................................... 22 0 4 0.25 1 1 0 0 0 0 0 0 0 0 0
..........................................................CAAACAGCACTGAGAAC..................................................................................................... 17 0 4 0.25 1 1 0 0 0 0 0 0 0 0 0
......................................................ACCGCAAACAGCACTGAGAA...................................................................................................... 20 0 4 0.25 1 1 0 0 0 0 0 0 0 0 0
...............................................TGTAAAGACCGCAAACAGCACTGAGAA...................................................................................................... 27 2 4 0.25 1 1 0 0 0 0 0 0 0 0 0
....................................................AGACCGCAAACAGCACTGAGAACAA................................................................................................... 25 0 4 0.25 1 1 0 0 0 0 0 0 0 0 0
.......................................................CCGCAAACAGCACTGAGA....................................................................................................... 18 0 4 0.25 1 1 0 0 0 0 0 0 0 0 0
....................................................AGACCGCAAACAGCACTGAGA....................................................................................................... 21 0 4 0.25 1 0 0 0 0 0 1 0 0 0 0
.................................................TAAAGACCGCAAACAGCACTGAGAAC..................................................................................................... 26 0 4 0.25 1 0 1 0 0 0 0 0 0 0 0
....................................................ATACCGCAAACAGCACTGAGAACAATCGT............................................................................................... 29 1 5 0.20 1 0 0 0 0 0 0 0 1 0 0
..............................................GGCTAAATACCGCAAACAGCACTG.......................................................................................................... 24 1 5 0.20 1 0 0 0 0 0 0 0 0 0 1
.............................................................ACAGCACTGAGAACAATCGTATCGT.......................................................................................... 25 0 5 0.20 1 0 0 0 0 1 0 0 0 0 0
.............................................................ACAGCACTGAGAACAATCGTA.............................................................................................. 21 0 5 0.20 1 1 0 0 0 0 0 0 0 0 0
.......................................................GGGCAAACAGCACTGAGAA...................................................................................................... 19 2 5 0.20 1 1 0 0 0 0 0 0 0 0 0
.....AAAAAAAGCTTCTACCGAT........................................................................................................................................................ 19 2 5 0.20 1 0 0 0 0 0 1 0 0 0 0
...............................................GCTAAATACCGCAAACAGCAC............................................................................................................ 21 1 5 0.20 1 0 0 0 0 0 0 0 0 0 1
........................................GCATTTGGCTAAAGAC........................................................................................................................ 16 0 6 0.17 1 1 0 0 0 0 0 0 0 0 0
.................................................TAAATACCGCAAACAGCACTGAGAA...................................................................................................... 25 1 6 0.17 1 0 0 0 0 0 1 0 0 0 0
...................................................AATACCGCAAACAGCACTGAGAACAA................................................................................................... 26 1 6 0.17 1 0 0 0 0 0 0 0 1 0 0
.................................ATGTGGTGCCTTTGGCGAAA........................................................................................................................... 20 3 8 0.13 1 1 0 0 0 0 0 0 0 0 0
.................................ATGTGATGCCTTTGG................................................................................................................................ 15 1 8 0.13 1 1 0 0 0 0 0 0 0 0 0
................................AATGTGATGCCTTTG................................................................................................................................. 15 1 9 0.11 1 0 0 0 0 0 0 0 0 0 1
.................................ATGTGATGCCTTTGGCC.............................................................................................................................. 17 2 11 0.09 1 1 0 0 0 0 0 0 0 0 0
......AAAAAAACTACAACCGAAT....................................................................................................................................................... 19 2 11 0.09 1 0 0 0 0 0 1 0 0 0 0
................................GATGTGATGCATTTG................................................................................................................................. 15 1 13 0.08 1 0 0 0 0 0 1 0 0 0 0
............................GCCCGATGTGATGCCTTTG................................................................................................................................. 19 3 14 0.07 1 1 0 0 0 0 0 0 0 0 0
..............................AAAATGTGATGCCTTTG................................................................................................................................. 17 2 18 0.06 1 0 0 0 0 0 1 0 0 0 0
....................................................................TGAGAACAATCCTAT............................................................................................. 15 1 19 0.05 1 1 0 0 0 0 0 0 0 0 0
.....................................................................................................AAAAGAAGAACCTGAAAC......................................................... 18 2 20 0.05 1 0 0 0 0 0 1 0 0 0 0
......................................................................................................AAAGAAGAACCTGTAAGCT....................................................... 19 2 20 0.05 1 1 0 0 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2r:2415778-2415953 - dsi_164 TTTTATTTTTTTTGAAGATGGCTTACATCG----GTTTACACTACGTAA----ACCGATTTCTGGCGTTT-GTCGTGACTCTTGTTAGCATAGCAGGTGTTATGTTGGCCATTTCTTCTTGGACGTTGGATTTCAAATCTTGTAGGGTTTTTGGACGGTTCACATAAACACAGTATTTAAA-AAAA
droSec2 scaffold_5256:24-197 - TTACATTTTTTTG-AAGATGAAATCTTCAA----CCTTAAATTGCGTAA----ACCGATTTCTGGCGTTT-GTCGTGACTCTTGTTAGCATAGCAGGTGTTATTTTGGCAATTTCTTCTTGGATGTTGGTTATCAAATCTTGTAGGGTTCTTGGATGGTTCACATATGCACAGG-GTGCAC-AAAA
dm3 chrX:21456606-21456775 - TT--ATATTTTTT--TGAAGATTAAATCTG----ATA--GGTGA-----CGTCTCCCATTTCTGGCGTTT-GTCGTGTCTCTTGTTAGCATAGAAGGTGTTATGCTGGCAATTTCTTCTTGAATGTTGGTTTTCAAATCTTGTAGGGTTCTTGGACAGTTCACATAAATATGGGAATTCAAAAAAA
droYak3 v2_chr2h_random_005:161051-161206 + C-TGATA---------GGTGAGTTCCCCCATTCTCCATACATTGCGTAA----ACCTATTTCTT----CC-TTCGTGACTCTTGTTAGCATAGTACGTATAATGTTGGCAATTTCGTCTTGGATGTTGGTT---------TTTAGGGTCCTTGGGCGGTTCACATAAACACGGGATTTCAA-A-AC
droBia1 scf7180000301830:7076-7253 + TATGATATCTTTC--AAATGGCCGCCTCTG----GCGTTGATGGCGTATTGTGCCCTTTTTGCAGCATTT-TCCATCATTTTCGCCAACATTTCGGCCGGAATAGCGGCTATTTCTTCACGAATGTTGTCCTTGAGCTCTTCTAGGGTGCTTGGCTTGTTAACGTAAACCTTTGACTTCAA-ATAT
droEle1 scf7180000488526:11237-11414 + TATGATATCTTTC--AAATGGCCGCCTCTG----GCGTTGATGGCGTATTGTGCCCTTTTTGTAGCATTT-TCCATCGTTTTCGCCAACATTTCGGCCGGAATGGCGGCTATTTCTTCACGAATGTTGTCCTTGAGCTCTTCTAGGGTCCTTGGCTTGTTAACGTAAACCTTTGACTTCAA-ATAT
droRho1 scf7180000771631:5524-5702 + TATGATATCTTTC--AAATGGCCGCCTCTG----GCGTTGATGGCGTATTGTGCCCTTTTTGCAGCATTTTTCCATCGTTTTCGCCAACATTTCGGCCGGAATAGCGGCTATTTCTTCACGAATGTTGTCCTTGAGCTCTTCTAGGGTCCTTGGCTTGTTAACGTAAACCTTTGACTTCAA-ATAT
droFic1 scf7180000453701:16101-16278 + TATGATATCTTTC--AAATGGCCGCCTCTG----GCGTTGATGGCGTATTGTGCCCTTTTTGCAGCATTT-TCCATCGTTTTCGCCAACATTTCGGCCGGAATAGCGGCTATTTCTTCACGAATGTTGTCCTTGAGCTCTTCTAGGGTCCTTGGCTTGTTAACGTAAACCTTTGACTTCAA-ATAT
droAna3 scaffold_13230:2792723-2792900 + TATGATATCTTTC--AAATGGCCGCCTCTG----GCGTTGATGGCGTATTGTGCCCTTTTTGCAGCATTT-TCCATCGTTTTCGCCAACATTTCGGCCGGAATAGCGGCTATTTCTTCACGAATGTTGTCCTTGAGCTCTTCTAGGGTCCTTGGCTTGTTAACGTAAACCCTTGACTTCAA-ATAT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
TTTTATTTTTTTTGAAGATGGCTTACATCG----GTTTACACTACGTAA----ACCGATTTCTGGCGTTT-GTCGTGACTCTTGTTAGCATAGCAGGTGTTATGTTGGCCATTTCTTCTTGGACGTTGGATTTCAAATCTTGTAGGGTTTTTGGACGGTTCACATAAACACAGTATTTAAA-AAAASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..........................................................TTTCTGGCGTTT-GTCGTGACT..........................................................................................................2142.00852100000000000000
...........................................................TTCTGGCGTTT-GTCGTGACT..........................................................................................................2041.25550000000000000000
.......................................................................GTCGTGACTCTTGTTAGCATAGCA...........................................................................................2451.00500000000000050000
..............................................................TGGCGTTT-GTCGTGACTCTTGTTAGT.................................................................................................2631.00300000003000000000
........................................................................................CATAGCAGGTGTTATGTT................................................................................1851.00500000500000000000
.......................................................................................................................................................TGGACGGTTCACATAAACACAGT............2311.00100000000001000000
..........................................TACGTAA----ACCGATTTCTGGCGTTT-G..................................................................................................................2511.00100000000001000000
..................................................................................................................................TTTCAAATCTTGTAGGGTTTTTGGA...............................2511.00100000010000000000
...........................................................................................................................................TTGTAGGGTTTTTGGACGGTTCACATAAA..................2911.00100000010000000000
.........................................................ATTTCTGGCGTTT-GTCGTGACT..........................................................................................................2240.75310200000000000000
.........................................................................CGTGACTCTTGTTAGCATAGCAGG.........................................................................................2430.67200010000001000000
..............................................................TGGCGTTT-GTCGTGACTCTTGTTAGCAT...............................................................................................2830.67200000000010010000
....................................................................TT-GTCGTGACTCTTGTTAGCA................................................................................................2150.60300100000200000000
...........................................................TTCTGGCGTTT-GTCGTGACTCT........................................................................................................2240.50220000000000000000
..........................................................TTTCTGGCGTTT-GTCGTGACC..........................................................................................................2140.50211000000000000000
............................................................................................GCAGGTGTTATGTTGGCCATT.........................................................................2120.50100000000001000000
....................................................................TT-GTCGTGACTCTTGTTAGCATAGCAGG.........................................................................................2820.50100000000010000000
.........................................................................CGTGACTCTTGTTAGCATA..............................................................................................1960.50300000000003000000
........................................................................................CATAGCAGGTGTTATGTTGGC.............................................................................2150.40200010000100000000
...............................................AA----ACCGATTTCTGGCGTTT-GTCGTGAC...........................................................................................................2730.33100000000000010000
..................................................................GTTT-GTCGTGACTCTTGTTAGCATA..............................................................................................2530.33100000010000000000
................................................A----ACCGATTTCTGGCGTTT-GTCGTGACT..........................................................................................................2730.33100000000001000000
..................................................................................TGTTAGCATAGCAGGTGTTATGTTGGC.............................................................................2730.33100010000000000000
..................................................................................TGTTAGCATAGCAGGTGTTATG..................................................................................2230.33100000000001000000
............................................................TCTGGCGTTT-GTCGTGACTCTTGTTAGC.................................................................................................2830.33100000000100000000
..................................................................................TGTTAGCATAGCAGGTGTTATGTA................................................................................2430.33100000000100000000
.................................................................................TTGTTAGCATAGCAGGTGTTATGT.................................................................................2430.33100000000010000000
..............................................TAA----ACCGATTTCTGGCGTTT-GTCGTGAC...........................................................................................................2830.33100000010000000000
...............................................................GGCGTTT-GTCGTGACTCTTGTTAGCATA..............................................................................................2830.33100000000000010000
.............................................................CTGGCGTTT-GTCGTGACTCTT.......................................................................................................2140.25100000000001000000
...............................................................GGCGTTT-GTCGTGACT..........................................................................................................1640.25100000000001000000
..............................................................TGGCGTTT-GTCGTGACTCTTGT.....................................................................................................2240.25100000000000010000
............................................................TCTGGCGTTT-GTCGTGAC...........................................................................................................1840.25110000000000000000
...........................................................TTCTGGCGTTT-GTCGTGACTCTTGT.....................................................................................................2540.25100000000001000000
.........................................................................................ATAGCAGGTGTTATGTTGGCG............................................................................2150.20100000000000001000
.......................................................................GTCGTGACTCTTGTTAGCATAGC............................................................................................2350.20100000000000010000
...................................................................TTT-GTCGTGACTCTTGTTAGCATAGCA...........................................................................................2750.20100000010000000000
.......................................................................GTCGTGACTCTTGTTAGCATAGCAA..........................................................................................2550.20100000000000010000
...................................................................TTT-GTCGTGACTCTTGTTAGT.................................................................................................2150.20100000001000000000
.........................................................ATTTCTGGCGTTT-GTCGTGA............................................................................................................2050.20100000000001000000
...................................................................TTT-GTCGTGACTCTTGTTAGC.................................................................................................2150.20100000010000000000
...........................................................TTCTGGCGTTT-GTCGTG.............................................................................................................1750.20100000000001000000
....................................................................TT-GTCGTGACTCTTGTTAGCATAGCA...........................................................................................2650.20100000000001000000
.....................................................................T-GTCGTGACTCTTGTTAGTGA...............................................................................................2160.17100000000010000000
droSec2
TTACATTTTTTTG-AAGATGAAATCTTCAA----CCTTAAATTGCGTAA----ACCGATTTCTGGCGTTT-GTCGTGACTCTTGTTAGCATAGCAGGTGTTATTTTGGCAATTTCTTCTTGGATGTTGGTTATCAAATCTTGTAGGGTTCTTGGATGGTTCACATATGCACAGG-GTGCAC-AAAASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
dm3
TT--ATATTTTTT--TGAAGATTAAATCTG----ATA--GGTGA-----CGTCTCCCATTTCTGGCGTTT-GTCGTGTCTCTTGTTAGCATAGAAGGTGTTATGCTGGCAATTTCTTCTTGAATGTTGGTTTTCAAATCTTGTAGGGTTCTTGGACAGTTCACATAAATATGGGAATTCAAAAAAASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...........................................................................................AGAAGGTGTTATGCTGGCAA...........................................................................2017.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................TA--GGTGA-----CGTCTCCCATTTCTGGCGT......................................................................................................................2616.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................TCTTGTAGGGTTCTTGGACAGTTCACA......................2714.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000200000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................TATGCTGGCAATTTCTTCTTGAATG.............................................................2513.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
....................................................................................................TATGCTGGCAATTTCTTCTTGAATGT............................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
............................................................................................GAAGGTGTTATGCTGGCAATT.........................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000
...............................................................................TCTTGTTAGCATAGAAGGTGT......................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
.....................TTAAATCTG----ATA--GGTGA-----CGTCTCCCA................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...............TGAAGATTAAATCTG----ATA--GGT................................................................................................................................................2121.5030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
...................................................................................................TTATGCTGGCAATTTCTTCTTGAATG.............................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................TGGCGTTT-GTCGTGTCTCTGC......................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
.....................TTAAATCTG----ATA--GGTGA-----CGTCTCCCATT..............................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................TATGCTGGCAATTTCTTCTTGAATGTTG..........................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................AATCTG----ATA--GGTGA-----CGTCTCC..................................................................................................................................2121.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000
.........................................................................CGTGTCTCTTGTTAGCATAGAAGGTG.......................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................AAATCTG----ATA--GGTGA-----CGTCT....................................................................................................................................2021.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................TCTTGTAGGGTTCTTGGACAGTTCAC.......................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................AGAAGGTGTTATGCTGGCAAT..........................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................AATCTTGTAGGGTTCTTGGACAGTT..........................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................TGTAGGGTTCTTGGACAGTTC.........................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
.........................................................ATTTCTGGCGTTT-GTCGTGTCTCTGT......................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000
........................................................................................................................................ATCTTGTAGGGTTCTTGGACA.............................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
..........................TCTG----ATA--GGTGA-----CGTCTCCCA................................................................................................................................2121.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000100000000000000000000000000000000000000000000000000000000000000000000000000
...................GATTAAATCTG----ATA--GGTGA-----CGTCTCCCAT...............................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................ATA--GGTGA-----CGTCTCCCATTTCTGGCGT......................................................................................................................2711.0010000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................TA--GGTGA-----CGTCTCCCATTTCTGGCG.......................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
...................GATTAAATCTG----ATA--GGTGA-----CG.......................................................................................................................................2121.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000
....................................................CTCCCATTTCTGGCGTTT-GTCGTGT............................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................TA--GGTGA-----CGTCTCCCATTTCTG..........................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................GTTAGCATAGAAGGTGTTAT...................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................TTT-GTCGTGTCTCTTGTTAGCATA..............................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
....................................................................................................................................TCAAATCTTGTAGGGTTCTTGGACAGT...........................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................TTTCTGGCGTTT-GTCGTGTCT..........................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................TCCCATTTCTGGCGTTT-GTCGTGTC...........................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
..................................................................GTTT-GTCGTGTCTCTTGTTAG..................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
.....................TTAAATCTG----ATA--GGTGA-----CGTCTCCC.................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................AAATCTG----ATA--GGTGA-----CGTCTC...................................................................................................................................2121.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000
...............................................................................................................................GGTTTTCAAATCTTGTAGGGT......................................2150.8040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................TGGTTTTCAAATCTTGTAGGG.......................................2180.7560000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000001100010000000000000000002000000000000000000000000000000000
............................TG----ATA--GGTGA-----CGTCTCCCATT..............................................................................................................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
..........................TCTG----ATA--GGTGA-----CGTCTCC..................................................................................................................................1920.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................GTTCTTGGACAGTTCACATA....................2020.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
...............TGAAGATTAAATCTG----ATA--GGTGA-----CGT......................................................................................................................................2620.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
........................AATCTG----ATA--GGTGA-----CGTCTCCCATT..............................................................................................................................2520.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
............T--TGAAGATTAAATCTG----ATA--GGTGA-----CGTC.....................................................................................................................................2820.5010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................AAATCTG----ATA--GGTGA-----CGTCTCCCAT...............................................................................................................................2520.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................TGGTTTTCAAATCTTGTAGGGTTCTTG.................................2750.4020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................TGTTGGTTTTCAAATCTTGTAGGGT......................................2550.4020000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................TG----ATA--GGTGA-----CGTCTCCCATTAAA...........................................................................................................................2430.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
...........................................................................................................GCAATTTCTTCTTGAATGTTG..........................................................2130.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
....................................................................................................................................................TCTTGGACAGTTCACATAAAA.................2130.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
.........................................................................................................................AATGTTGGTTTTCAAATCTTGTAGGGT......................................2730.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................CAAATCTTGTAGGGTTCTTGGT...............................2270.2920000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000
..........................................................................................................................ATGTTGGTTTTCAAATCTTGT...........................................2170.2920000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000
...........................................................................................................................TGTTGGTTTTCAAATCTTGTAGGGTT.....................................2650.2010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................GTTGGTTTTCAAATCTTGTAGGGTTC....................................2650.2010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................TTGGTTTTCAAATCTTGTAGGGTT.....................................2450.2010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................AAATCTTGTAGGGTTCTTGGT...............................21110.1820000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000001000000000000000000000000000000000
................................................................................................................................GTTTTCAAATCTTGTAGGGTTCTTGG................................2660.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
..............................................................................................................ATTTCTTCTTGAATGTTGGTT.......................................................2160.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................TTCTTCTTGAATGTTGGT........................................................1860.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................CAAATCTTGTAGGGTTCTTGGA...............................2270.1410000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000
....................................................................................................................................TCAAATCTTGTAGGGTTCTTGG................................2270.1410000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
..................................................................................................................................TTTCAAATCTTGTAGGGTTCTTGGAC..............................2670.1410000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................TTTTCAAATCTTGTAGGGTTCTTGGA...............................2670.1410000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................TTGGTTTTCAAATCTTGTAGG........................................2180.1310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................AAATCTTGTAGGGTTCTTGGTT..............................22120.0810000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
droYak3
C-TGATA---------GGTGAGTTCCCCCATTCTCCATACATTGCGTAA----ACCTATTTCTT----CC-TTCGTGACTCTTGTTAGCATAGTACGTATAATGTTGGCAATTTCGTCTTGGATGTTGGTT---------TTTAGGGTCCTTGGGCGGTTCACATAAACACGGGATTTCAA-A-ACSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droBia1
TATGATATCTTTC--AAATGGCCGCCTCTG----GCGTTGATGGCGTATTGTGCCCTTTTTGCAGCATTT-TCCATCATTTTCGCCAACATTTCGGCCGGAATAGCGGCTATTTCTTCACGAATGTTGTCCTTGAGCTCTTCTAGGGTGCTTGGCTTGTTAACGTAAACCTTTGACTTCAA-ATATSizeHit CountTotal NormTotal
No Reads
droEle1
TATGATATCTTTC--AAATGGCCGCCTCTG----GCGTTGATGGCGTATTGTGCCCTTTTTGTAGCATTT-TCCATCGTTTTCGCCAACATTTCGGCCGGAATGGCGGCTATTTCTTCACGAATGTTGTCCTTGAGCTCTTCTAGGGTCCTTGGCTTGTTAACGTAAACCTTTGACTTCAA-ATATSizeHit CountTotal NormTotal
No Reads
droRho1
TATGATATCTTTC--AAATGGCCGCCTCTG----GCGTTGATGGCGTATTGTGCCCTTTTTGCAGCATTTTTCCATCGTTTTCGCCAACATTTCGGCCGGAATAGCGGCTATTTCTTCACGAATGTTGTCCTTGAGCTCTTCTAGGGTCCTTGGCTTGTTAACGTAAACCTTTGACTTCAA-ATATSizeHit CountTotal NormTotal
No Reads
droFic1
TATGATATCTTTC--AAATGGCCGCCTCTG----GCGTTGATGGCGTATTGTGCCCTTTTTGCAGCATTT-TCCATCGTTTTCGCCAACATTTCGGCCGGAATAGCGGCTATTTCTTCACGAATGTTGTCCTTGAGCTCTTCTAGGGTCCTTGGCTTGTTAACGTAAACCTTTGACTTCAA-ATATSizeHit CountTotal NormTotal
No Reads
droAna3
TATGATATCTTTC--AAATGGCCGCCTCTG----GCGTTGATGGCGTATTGTGCCCTTTTTGCAGCATTT-TCCATCGTTTTCGCCAACATTTCGGCCGGAATAGCGGCTATTTCTTCACGAATGTTGTCCTTGAGCTCTTCTAGGGTCCTTGGCTTGTTAACGTAAACCCTTGACTTCAA-ATATSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
....................................................................................................................TCACGAATGTTGTCCTTGAGCTCTTC............................................261111.2712477422030
.......................................................................TCCATCGTTTTCGCCAACATTTCGGCC........................................................................................2794.11378290000
....................................................................................................................TCACGAATGTTGTCCTTGAGCTCTT.............................................25123.504229121000
..........................TCTG----GCGTTGATGGCGTATTGTGCCC..................................................................................................................................26111.36153120000
....................................................................................................................TCACGAATGTTGTCCTTGAGCTCT..............................................24121.2515771000
....................................................................................................................TCACGAATGTTGTCCTTGAGCTCTTCT...........................................27111.0912741000
................................................................................................................................................GGGTCCTTGGCTTGTTAACGTAAACCC...............2711.001010000
............................................................................................................................................................TGTTAACGTAAACCCTTGACTTCAA-AT..2711.001100000
..........................TCTG----GCGTTGATGGCGTATTGTGC....................................................................................................................................24121.0012417000
.....................................................................T-TCCATCGTTTTCGCCAACATTTCGGCC........................................................................................2891.009270000
....................................................................TT-TCCATCGTTTTCGCCAACATTTCGGCC........................................................................................2990.787430000
............................TG----GCGTTGATGGCGTATTGTGCCCTT................................................................................................................................26100.707430000
..........................TCTG----GCGTTGATGGCGTATTGTGCCCT.................................................................................................................................27100.707430000
....................................................................................................................TCACGAATGTTGTCCTTGAGCTC...............................................23120.678080000
...................................................................TTT-TCCATCGTTTTCGCCAACATTTC............................................................................................2690.676420000
........................................................................CCATCGTTTTCGCCAACATTTCGGCC........................................................................................2690.676321000
.....................................................................................................................CACGAATGTTGTCCTTGAGCTCTTC............................................25110.647430000
............................TG----GCGTTGATGGCGTATTGTGCCCT.................................................................................................................................25100.606051000
............................TG----GCGTTGATGGCGTATTGTGCCCTTT...............................................................................................................................27100.606510000
..............................................................CAGCATTT-TCCATCGTTTTCGCCAACA................................................................................................2790.565050000
....................................................................................................................TCACGAATGTTGTCCTTGAGCTCTTCTA..........................................28110.556510000
...............................................................................................................TTTCTTCACGAATGTTGTCCTTGAGC.................................................26110.556231000
............................TG----GCGTTGATGGCGTATTGTGCCC..................................................................................................................................24110.556060000
....................................................................................................................TCACGAATGTTGTCCTTGAGC.................................................21120.506330000
....................................................................................................................TCACGAATGTTGTCCTTGAGCTCTTCTAG.........................................29110.455500000
..............................................................CAGCATTT-TCCATCGTTTTCGCCAAC.................................................................................................2690.444220000
....................................................................TT-TCCATCGTTTTCGCCAACATTTCGG..........................................................................................2790.444301000
...................................................................TTT-TCCATCGTTTTCGCCAACATTTCGG..........................................................................................2890.444130000
...................................................................TTT-TCCATCGTTTTCGCCAACATT..............................................................................................2490.444130000
.............................................................GCAGCATTT-TCCATCGTTTTCGCCAACA................................................................................................2890.444220000
.....TATCTTTC--AAATGGCCGCCTCTG----GC......................................................................................................................................................25120.425140000
.....TATCTTTC--AAATGGCCGCCTCTG----G.......................................................................................................................................................24120.425221000
...........................................................TTGCAGCATTT-TCCATCGTTTTCGCC....................................................................................................26100.404130000
............................................................TGCAGCATTT-TCCATCGTTTTCGCC....................................................................................................25100.404130000
.................................................................................................................TCTTCACGAATGTTGTCCTTGAGCTC...............................................26110.364040000
...GATATCTTTC--AAATGGCCGCCTCTG----G.......................................................................................................................................................2690.333300000
.....TATCTTTC--AAATGGCCGCCTCTG----GCGTT...................................................................................................................................................28120.334040000
.....TATCTTTC--AAATGGCCGCCTCTG----GCGT....................................................................................................................................................27120.334040000
.................................................................CATTT-TCCATCGTTTTCGCCAACA................................................................................................2490.333120000
..........................................................TTTGCAGCATTT-TCCATCGTTTTCGCC....................................................................................................27100.303120000
..........................................................TTTGCAGCATTT-TCCATCGTTTTCGC.....................................................................................................26100.303210000
..........................TCTG----GCGTTGATGGCGTATTGTGCCCTT................................................................................................................................28100.303210000
..........................TCTG----GCGTTGATGGCGTATTGTGCC...................................................................................................................................25120.253120000
.......TCTTTC--AAATGGCCGCCTCTG----GCGTT...................................................................................................................................................26120.253120000
......................................TGATGGCGTATTGTGCCCTTTTTGCA..........................................................................................................................2690.222200000
..............................................................................................................................................TAGGGTCCTTGGCTTGTTAACGTAAAC.................2790.222020000
......................................TGATGGCGTATTGTGCCCTTTTTGCAGC........................................................................................................................2890.222011000
...................................................................TTT-TCCATCGTTTTCGCCAACATTT.............................................................................................2590.222020000
...................................................................TTT-TCCATCGTTTTCGCCAACATTTCGGC.........................................................................................2990.222110000
...GATATCTTTC--AAATGGCCGCCTCTG----........................................................................................................................................................2590.222200000
......................................TGATGGCGTATTGTGCCCTTTTTGC...........................................................................................................................2590.222101000
.......................................................................TCCATCGTTTTCGCCAACATTTCGG..........................................................................................2590.222200000
...GATATCTTTC--AAATGGCCGCCTCT.............................................................................................................................................................2490.222200000
.............................................................GCAGCATTT-TCCATCGTTTTCGCC....................................................................................................24100.202020000
...........................................................TTGCAGCATTT-TCCATCGTTTTCGC.....................................................................................................25100.202020000
...................................................................................................................TTCACGAATGTTGTCCTTGAGCTCTTC............................................27100.202110000
.........................................................TTTTGCAGCATTT-TCCATCGTTTTCGC.....................................................................................................27100.202020000
TATGATATCTTTC--AAATGGCCGCC................................................................................................................................................................24100.202110000
..............................................................CAGCATTT-TCCATCGTTTTCGCC....................................................................................................23100.202020000
.............................................................................................................TATTTCTTCACGAATGTTGTCCTTGAGC.................................................28110.182110000
............................TG----GCGTTGATGGCGTATTGTGCCCC.................................................................................................................................25110.182020000
.....................................................................................................................CACGAATGTTGTCCTTGAGCTCTTCTAG.........................................28110.182200000
....................................................................................................................TCACGAATGTTGTCCTTGAGCTCC..............................................24120.172020000
.....................................................................................................................CACGAATGTTGTCCTTGAGCTCTT.............................................24120.172200000
.......................GCCTCTG----GCGTTGATGGCGTATTGC......................................................................................................................................25120.172020000
.....................................................................................................................CACGAATGTTGTCCTTGAGCTCT..............................................23120.172200000
...............................................................................................................TTTCTTCACGAATGTTGTCCTTGA...................................................24120.172200000
.....TATCTTTC--AAATGGCCGCC................................................................................................................................................................19130.152020000
........................................................................................................................................CTCTTCTAGGGTCCTTGGCTT.............................2180.131100000
..........................................................................ATCGTTTTCGCCAACATTTCGGCCGG......................................................................................2680.131100000
.....................................TTGATGGCGTATTGTGCCCTTTTTGCA..........................................................................................................................2790.111100000
...................................................................TTT-TCCATCGTTTTCGCCAACATC..............................................................................................2490.111010000
..TGATATCTTTC--AAATGGCCGCCTCTG----........................................................................................................................................................2690.111100000
..............................................................CAGCATTT-TCCATCGTTTTCGCCAACAT...............................................................................................2890.111100000
..................................................................ATTT-TCCATCGTTTTCGCCAACA................................................................................................2390.111100000
..................................................................ATTT-TCCATCGTTTTCGCCAACATT..............................................................................................2590.111010000
..TGATATCTTTC--AAATGGCCGCCTCT.............................................................................................................................................................2590.111010000
....................................................................................................................................TGAGCTCTTCTAGGGTCCTTGGC...............................2390.111010000
.......................................................CTTTTTGCAGCATTT-TCCATCGTT..........................................................................................................2490.111010000
...GATATCTTTC--AAATGGCCGCCTCTG----GC......................................................................................................................................................2790.111100000
...................................................................................................................................................TCCTTGGCTTGTTAACGTAAACC................2390.111010000
..............................................................................................................................TGTCCTTGAGCTCTTCTAGGGTCCT...................................2590.111010000
.....................................TTGATGGCGTATTGTGCCCTTTTTGCAG.........................................................................................................................2890.111001000
..............................................................................................................................................TAGGGTCCTTGGCTTGTTAACGTA....................2490.111000001
................................................................GCATTT-TCCATCGTTTTCGCCAACATT..............................................................................................2790.111010000
......................................................................................................................................AGCTCTTCTAGGGTCCTTGGC...............................2190.111000001
..................................................................ATTT-TCCATCGTTTTCGCCAACATTT.............................................................................................2690.111010000
.....................................................................T-TCCATCGTTTTCGCCAACATTTCGGC.........................................................................................2790.111100000
...GATATCTTTC--AAATGGCCGCCTCTG----GCGT....................................................................................................................................................2990.111010000
............................................................TGCAGCATTT-TCCATCGTTTTCGCCAACA................................................................................................2990.111010000
..................................................................................CGCCAACATTTCGGCCGGAAT...................................................................................2190.111100000
...................................................................TTT-TCCATCGTTTTCGCCAACATTTCG...........................................................................................2790.111100000
.....................................................................T-TCCATCGTTTTCGCCAACATTTCGG..........................................................................................2690.111010000
..............................................................................................................................TGTCCTTGAGCTCTTCTAGGGTCC....................................2490.111100000
.......................................GATGGCGTATTGTGCCCTTTTTGCAGC........................................................................................................................2790.111010000
.......................................................................TCCATCGTTTTCGCCAACATTTCGGC.........................................................................................2690.111100000
.....................................................................T-TCCATCGTTTTCGCCAACATTTCGGCT........................................................................................2890.111010000
................................................................GCATTT-TCCATCGTTTTCGCCAAC.................................................................................................2490.111010000
............................................................TGCAGCATTT-TCCATCGTTTTCGCCAAC.................................................................................................2890.111100000
...................................................................TTT-TCCATCGTTTTCGCCAACATTTCA...........................................................................................2790.111010000
................................................................................................................................TCCTTGAGCTCTTCTAGGGTCC....................................2290.111100000
.....................................................................T-TCCATCGTTTTCGCCAACATTTCGT..........................................................................................2690.111001000
..................................................................ATTT-TCCATCGTTTTCGCCAACATTTCGG..........................................................................................2990.111100000
...........TC--AAATGGCCGCCTCTG----GCGTTGATGG..............................................................................................................................................27100.101100000
..............................................................CAGCATTT-TCCATCGTTTTCGCCAG..................................................................................................25100.101010000
........CTTTC--AAATGGCCGCCTCTG----GCGTTGA.................................................................................................................................................27100.101100000
.............................G----GCGTTGATGGCGTATTGTGCCCTT................................................................................................................................25100.101100000
.................ATGGCCGCCTCTG----GCGTTGATGGCGT...........................................................................................................................................26100.101010000
.........................CTCTG----GCGTTGATGGCGTATTGTGCCCTT................................................................................................................................29100.101100000
..................TGGCCGCCTCTG----GCGTTGATGGCGTAT.........................................................................................................................................27100.101010000
...........................CTG----GCGTTGATGGCGTATTGTGCCCTTT...............................................................................................................................28100.101100000
TATGATATCTTTC--AAATGGCCGCCT...............................................................................................................................................................25100.101010000
................AATGGCCGCCTCTG----GCGTTGATG...............................................................................................................................................23100.101100000
.........................................................TTTTGCAGCATTT-TCCATCGTTTTCG......................................................................................................26100.101100000
..........................TCTG----GCGTTGATGGCGTATTGTGCCCTTT...............................................................................................................................29100.101010000
.........................................................TTTTGCAGCATTT-TCCATCGTTTTCGCC....................................................................................................28100.101010000
.........................................................................CATCGTTTTCGCCAACATTTCGGCC........................................................................................25100.101100000
.........................................TGGCGTATTGTGCCCTTTTTGCAGC........................................................................................................................25100.101010000
...........................................................TTGCAGCATTT-TCCATCGTTTTCG......................................................................................................24100.101100000
.........................................................TTTTGCAGCATTT-TCCATCGTTTTC.......................................................................................................25100.101010000
..........................................GGCGTATTGTGCCCTTTTTGCAGCAT......................................................................................................................26100.101010000
............................................................TGCAGCATTT-TCCATCGTTTTCGC.....................................................................................................24100.101010000
................AATGGCCGCCTCTG----GCGTTGATGGC.............................................................................................................................................25100.101010000
...................................................................................................................TTCACGAATGTTGTCCTTGAGCTCT..............................................25110.091001000
................................................................................................................TTCTTCACGAATGTTGTCCTTGAGCT................................................26110.091010000
.....................................................................................................................CACGAATGTTGTCCTTGAGCTCTTCTA..........................................27110.091100000
..................................................................................................................CTTCACGAATGTTGTCCTTGAGCTC...............................................25110.091100000
.......................................................CTTTTTGCAGCATTT-TCC................................................................................................................18110.091100000
...........................CTG----GCGTTGATGGCGTATTGTGCCC..................................................................................................................................25110.091010000
...........................................................................................................................TGTTGTCCTTGAGCTCTTCTAGG........................................23110.091100000
......................................................................................................................ACGAATGTTGTCCTTGAGCTCTTCTAG.........................................27110.091100000
.........................CTCTG----GCGTTGATGGCGTATTGTGCCC..................................................................................................................................27110.091100000
..........................................................................................................................ATGTTGTCCTTGAGCTCTTCA...........................................21110.091000010
................................................................................................................TTCTTCACGAATGTTGTCCTTGAGC.................................................25110.091100000
.........................................................................................................................AATGTTGTCCTTGAGCTCTTC............................................21110.091100000
...................................................................................................................TTCACGAATGTTGTCCTTGAGCTCC..............................................25110.091010000
..........................................................................................................................ATGTTGTCCTTGAGCTCTTCT...........................................21110.091100000
......................................................................................................TAGCGGCTATTTCTTCACGAATGTTG..........................................................26110.091100000
.......................................................................................................AGCGGCTATTTCTTCACGA................................................................19110.091100000
......................................................................................................TAGCGGCTATTTCTTCACGAATGTT...........................................................25110.091010000
....ATATCTTTC--AAATGGCCGCCTCTG----G.......................................................................................................................................................25120.081100000
....................................................................................................................TCACGAATGTTGTCCTTGAGCC................................................22120.081010000
..........................TCTG----GCGTTGATGGCGTA..........................................................................................................................................18120.081001000
....ATATCTTTC--AAATGGCCGCCTCTG----........................................................................................................................................................24120.081100000
...........................................................................................................................TGTTGTCCTTGAGCTCTT.............................................18120.081100000
.......TCTTTC--AAATGGCCGCCTCTG----GC......................................................................................................................................................23120.081010000
......ATCTTTC--AAATGGCCGCCTCTG----GC......................................................................................................................................................24120.081010000
......................................................................................................................ACGAATGTTGTCCTTGAGCTC...............................................21120.081100000
......................CGCCTCTG----GCGTTGATGGCGT...........................................................................................................................................21120.081000001
....................................................................................................................TCACGAATGTTGTCCTTGAGCTCTC.............................................25120.081010000
.......................................................................................................................CGAATGTTGTCCTTGAGCTCTT.............................................22120.081100000
......................................................................................................................ACGAATGTTGTCCTTGAGCTCTT.............................................23120.081100000
.........TTTC--AAATGGCCGCCTCTG----GC......................................................................................................................................................21120.081010000
....................................................................................................................TCACGAATGTTGTCCTTGAGCT................................................22120.081010000
............................TG----GCGTTGATGGCGTATTGTGC....................................................................................................................................22120.081001000
..........................TCTG----GCGTTGATGGCGTATTGT......................................................................................................................................22120.081010000
.....TATCTTTC--AAATGGCCGCCTCTG----GCG.....................................................................................................................................................26120.081100000
..........................TCTG----GCGTTGATGGCGTATTGTGCG...................................................................................................................................25120.081010000
.........................CTCTG----GCGTTGATGGCGTATTGTGC....................................................................................................................................25120.081100000
......ATCTTTC--AAATGGCCGCCTCTG----GCGTC...................................................................................................................................................27120.081010000
............................TG----GCGTTGATGGCGTATTGTGCC...................................................................................................................................23120.081010000
.............................................................................................................TATTTCTTCACGAATGTTGTCCTTGA...................................................26120.081100000

Generated: 05/15/2015 at 03:18 PM