ID:

dsi_16380

 Coordinate:

2l:3548421-3548646 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-6.6 -6.5 -6.5 -6.4

Flybase annnotation

three_prime_UTR [2l_3548632_3548652_-]; CDS [2l_3548653_3548834_-]; exon [2l_3548632_3548834_-]

No Repeatable elements found

Sense Strand Reads

#################################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
GATTCGATTCGAGGGAAATCTGTGAAGACAAGTGCTTGCAATAAAATTAGGTGAATCAAAAATCGAAAGCTTATGTATTTCAGTTAGGCATGGGCATGTACTTAATTTGACGCAGCTACTTTTTGATTTGCTAGCTCTATCTGAATTGAGACTCCCCGACTTGGGTCATCATTTTAATTGTATAAGATAGACCCCAATTCAAAATATTAAAAGTCCGGACAAACATTTATACTTTGCATTCCCGATGGGCATTACTTGATCTACGGATTCGGAGAGACGTTGTTTTCGAATCTCAAGTTCAAATGAGGCTAGTGGTTCTGGGCTGT
**************************************************************************************************************************************************************************************************************..((...(((((((((..................(((...)))......))).)))..)))))********************************************************* 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 GSM343915
embryo
 M023
head
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 SRR902009
testis
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
..............................................................................................................................................................................................................TTAAAAGTCCGGACAAAC...................................................................................................... 18 0 1 2.00 2 2 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................GGCATTACTTGATCTACGGATT......................................................... 22 0 1 1.00 1 0 0 1 0 0 0 0 0
.........................................................................................................................................................................................................AAATATTAAAAGTCCGGACAAACA..................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0
................................................................................................................................................ATTGAGACTCCCCGACTTGGGT................................................................................................................................................................ 22 0 1 1.00 1 0 1 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................AATACTTGATCTCCTGATTCG....................................................... 21 3 1 1.00 1 0 0 0 1 0 0 0 0
....................................................................................................................................................................................................................GTCCGGACAAACATTTATAC.............................................................................................. 20 0 1 1.00 1 0 0 1 0 0 0 0 0
.........................................................................TCTATTTCAGTTAGGCATGGGC....................................................................................................................................................................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0
..................................................................................................................................................................................................................AAGTCCGGACAAACATTTAT................................................................................................ 20 0 1 1.00 1 1 0 0 0 0 0 0 0
..................................................................................................................GCTACTTTTTGATTTGCTAGT............................................................................................................................................................................................... 21 1 1 1.00 1 0 1 0 0 0 0 0 0
...................................................................................................................................................................................................................................................GATGGGCATTACTTGATCTACGGAT.......................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0
...............................................................................................................GCAGCTACTTTTTGATCGGGT.................................................................................................................................................................................................. 21 3 4 0.25 1 0 0 0 0 1 0 0 0
..........................................................................................................................................................................................................................................................................ATTCGACGAGACGGTGTTTT........................................ 20 3 4 0.25 1 0 0 0 0 0 1 0 0
................................................................................CAGTAAGGCATGGGTA...................................................................................................................................................................................................................................... 16 2 20 0.20 4 0 0 0 0 4 0 0 0
...........................................................................................................................................................................................................ATATTAGAAGTACGGACA......................................................................................................... 18 2 5 0.20 1 0 0 0 0 0 0 1 0
................................................................................................................................TGATAGCTCTATCTG....................................................................................................................................................................................... 15 1 8 0.13 1 0 0 0 1 0 0 0 0
.....................................................................................................................................................................................................................................................................................................................TAGTTGTTCTGGGCT.. 15 1 9 0.11 1 0 0 0 0 0 0 0 1
...........................................................................................GGGCATGTACATTATTCGA........................................................................................................................................................................................................................ 19 3 16 0.06 1 0 1 0 0 0 0 0 0

Anti-sense strand reads

CTAAGCTAAGCTCCCTTTAGACACTTCTGTTCACGAACGTTATTTTAATCCACTTAGTTTTTAGCTTTCGAATACATAAAGTCAATCCGTACCCGTACATGAATTAAACTGCGTCGATGAAAAACTAAACGATCGAGATAGACTTAACTCTGAGGGGCTGAACCCAGTAGTAAAATTAACATATTCTATCTGGGGTTAAGTTTTATAATTTTCAGGCCTGTTTGTAAATATGAAACGTAAGGGCTACCCGTAATGAACTAGATGCCTAAGCCTCTCTGCAACAAAAGCTTAGAGTTCAAGTTTACTCCGATCACCAAGACCCGACA
*********************************************************..((...(((((((((..................(((...)))......))).)))..)))))************************************************************************************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 M024
male body		 SRR902009
testis
 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
.....................................................................................................................................................CCGAGGGGCTGAACCTA................................................................................................................................................................ 17 2 8 1.25 10 10 0 0 0 0 0
....................................................................................................................................................ACCGAGGGGCTGAACC.................................................................................................................................................................. 16 2 20 1.15 23 22 0 0 0 0 1
.....................................................................................................................................................CCGAGGGGCTGAACC.................................................................................................................................................................. 15 1 3 0.67 2 2 0 0 0 0 0
.....................................................................................................................................................................................................................................................................ATGCCTAAGCGTCTC.................................................. 15 1 7 0.29 2 0 2 0 0 0 0
....................................................................................................................................................ACTGAGGGGCTGGACCC................................................................................................................................................................. 17 2 7 0.29 2 2 0 0 0 0 0
.......................................................................................................................................................GAGGGGCTGAACCTA................................................................................................................................................................ 15 1 4 0.25 1 1 0 0 0 0 0
....................................................................................................................................................ACTGAGGGGCTGAACC.................................................................................................................................................................. 16 1 4 0.25 1 1 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................CACAAGTTGAGAGTTCAAGT......................... 20 3 9 0.22 2 0 0 2 0 0 0
.......................................................................................................................................................................................................................................................................................................TCAAGCTTACACCGATCA............. 18 2 5 0.20 1 0 1 0 0 0 0
................................................................................................................................................................................................................TTTTCCGGCCTGTTTGTAC................................................................................................... 19 2 5 0.20 1 0 0 0 1 0 0
.....................................................................................................................................................CCGAGGGGCTGAACCT................................................................................................................................................................. 16 2 20 0.20 4 4 0 0 0 0 0
..........................................................................................................................................................................................................................TGTTTGTAAACTTGAAGCG......................................................................................... 19 3 20 0.10 2 2 0 0 0 0 0
....................................................................................................................................................ACCGAGGGGCTGAACCTAG............................................................................................................................................................... 19 3 15 0.07 1 1 0 0 0 0 0
.........................................AGTTTAATCCAGTTAGTTGT......................................................................................................................................................................................................................................................................... 20 3 19 0.05 1 1 0 0 0 0 0
.......................................................................................................................AAAAACTCAACCATCGAGAA........................................................................................................................................................................................... 20 3 20 0.05 1 0 0 0 0 1 0
.................................................................................................................................................................ACCGAGTAGTAAAAT...................................................................................................................................................... 15 1 20 0.05 1 0 0 0 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2l:3548371-3548696 - dsi_16380 GATTCGATTCGAGGGAAATCTGTGAAGACAAGTGCTTGCAATAAAATTA--GG-------TGA-----------ATCAAAAAT-------------CGAAAGC-----------------------TTATGTATTTCAGTTAGGCATGGGCATGTACTTAATTTGACGCAGCTACT-TTTTGATTTGCTAGCTCTATCTGA------------ATTGAGACT---CCCCGACTTGG-GTCATCATTTTA-ATTGTATAAGATAGACCCCAATTCAAAATATTAAAAGTCCGGACAAACATTTATACTTTGCATTCCCGATGGGCATTACTTGATCTACGG---ATTCGGAGAGACGTTGTTT----------------------TCGAATCTCAAGTTCAAATGAGGCTAGTGGTTCTGGGCTGT
droSec2 scaffold_5:1790710-1791025 - GATTTGATTCGAGGGAAATCTGTGAAGACAAGTGTTTGCAATAAAATTA--GG-------TGA-----------ATCAAAAAT-------------CGAAAGC-----------------------TTATGTATTTCAGTTAGGCATGGGCATGTACTTAATGTGGCGCAGCTACT-TTTTGATTTGCTAGCTCTATCTGA------------ACTGAGACT---C-CCGACTTGG-GTCAT------A-ATCGTATAAGAT------TAATTCAAAATATTAAAAGTCCGGACAAACATTTACACTTTGCATTCCCGATGGGCATAACTTGATCTACGGCGGATTCGGAGAGACGTTGTTT----------------------TCGAATCTCAAGTTCAAATGAGGCTAGTGGTTCTTGGCTGT
dm3 chr2L:3694785-3695096 - GATTTAATTCGAGGGAAATCTGTGAAGACAAGTGTTTGCAATAAAATTA--CG-------TGA-----------ATCAAAAAT-------------TGAAAGC-----------------------TTTTGTATTTCAGTTTGGCATGGTCATGTACTTGATTTGGCGCAGCTACTTTTTTGATTAGCTAGCACAATCTGA------------TCTGAGACT---CACAGACTTGG-TACAT------ACATTGTATAAGA----------TTCAAAATTTTGAAAGTCCGCACAAACATTTCCATTTTGCATTCCCGAGAGGCATTACTTGATCTACGG---ACTCGTAAAGACGTTGTTT----------------------TCGAAACTCAAGTTCAAATGAGGCTAGTGGTTCTTGGCTGT
droEre2 scaffold_4929:3734503-3734823 - GATTCAATTCGAGGGAAAACTGTGAAGACAAGTGTTTGCAATAAAAAGG--AA------GATA-----------ATTAAAAAT-------------TGAAAGC-----------------------CTCTGTCTATCAGTTTGGGGTTGCCATGTATTTGCTTTGGCGCAATCATT-TTGTGATAAGCTAGCACTATCTGA------------CCTGAGACT---CACTGATTTGG-TACAG------A-ATTATATAAGAAAGAGCCCAATTCAAGACTTTAGAAGTCTGGACAAGCAGTTCTACTTTGCTCTCCCGATAGCCATCACTTGGTCTACGG---ACTCGGAGACTCATTGCTT----------------------TTGAAACTGAAGTTCCAATGAGGCTAGTTATTCCTTGTTGT
droYak3 2L:3690899-3691101 - GCTTCGATTCGAGGGAAAACTGCGAAGACAAGTGTTTGCAATAAATCAA--TAAATCAAGTGA-----------ATCAAAAAT-------------TGAAAGA-----------------------TTTTGTATTTTAGTTTGGGATTGCCATGTGCTTGCTTTGGCGCAATCATT-TTTTGATTAGCCAGCATTATCTGA------------ACTGAGACT---CACTGACTTGG-TACATTATA-TA-ATTATATAAGAGAGAGCCCAA----------------------------------------------------------------------------------------------------------------------------------------------------------
droEug1 scf7180000409554:2383797-2384033 + GATTTAATTCCAAGGAAAATTGCGAAGCCAGGTGCTGGCCATAAAGTTT--TG-------TAA-----------AACAAAAAC-------------TTTTAAT-----------------------CT------CTTATTTAGAG--------------A---------AATTCTC-T------------TCTCTCTCTCCGAGGCTTTAATCCAGAGCACT---GCTAGATAAGACCGAGC------T-GTTCTCT-----------------------CCCTGTCTT--------TAATTAATCTCTGATTTATAAATGGGCA-TAGTCGCTTAAC------------------------------------------------GAAATCGGAGCCAACATGAAGTACCTTGCTATTGTTTGC
droBia1 scf7180000302261:2073178-2073255 - GATTCAATTCGAAGGAAAACTGCGAAGACAAGTGCTTGGAATAAAATGT--AG-------TGA-----------ATCAGAGAC-------------AAACAAA-----------------------A--TGTATTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droTak1 scf7180000415709:170441-170624 + GATTCGATTCCAAGGAAAATTGTGAAGAAAAGTGTTTGCAATAAAATTA--AG-------TGA-----------ACAAAAACT-------------AAAAAAA-----------------------AATTAT-TTTTAATTAGAGATTACTT--TATTTG---TGGCGCAAT---T-------------TGCTATATCTAAA--G--------TCTGAGCTC---CAGTGACCTGC-TA-AT------A------ATAAGATAAAGCTCTA----TAATTTATGAAATA------------------------------------------------------------------------------------------------------------------------------------TTAA
droEle1 scf7180000490728:424209-424299 - CC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATTGGCATTAGTCGTTCCACAC---AAGCTGGAGAAGATTGTTTGCT----------AAATCACCAC------TACAATCAGTATGAAGTTCATTGCTGTTGTCTGC
droRho1 scf7180000779523:417259-417581 - GTTTCGATTCTAAGGAGAATTGTGAAGACAAGTGTTTGCAATAAACATTG-AG-------TGA-----------AACGAAAAC-------------CAATTAATTATTTTATGGGCAACCAGATTCGGGTCTTATCTGCCT------------------------ACTTAGTCATT-T------------GTACTATCTCCAGAGCTCCTTTGACCTACATT---CCCAGATTTGA-AGAGC------C-GTTGTTTGAGGC------GA---TGAAGTGCCCAGAGCTTGGATAA----TTCAGTGTTAGACCTTCGATTGGCATCAGTCGATCCACGG---AAGCTGTGAAAGATTATTTACTCGTATATTTAAAAACAAAAT------CGCAATCATTATGAAGTTCATTGCTGTTGTCTGT
droFic1 scf7180000453924:1679654-1679710 - GATTCAACTCGAAGGAGAATTGTGAAGACAAGTGTTTGCAATAAAATAA--AG-------CAA-----------GTC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droKik1 scf7180000302270:915541-915675 - GTTTTGGCTCCAAAGAAGATTGTGAAGAAAAGTGTTTGGAATAAAATGG--AATAAC----AA--------GCTATAAATAAA-------------TAAAAGC-----------------------GTTTCTTTTCTATTTACAT--------------AATATAACTTATTTAAT-ATTTGATATATATATTCTCTCTG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droAna3 scaffold_12916:5756181-5756260 - CGTTTGCC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTAGTTGTTCCACAGAA-GCTGGAAGAGATATCATTT----------------------TT------AAAATCAGTATGAAGTTCATTGCTGTCGTTTGC
droBip1 scf7180000396568:1091723-1091802 + GATTTGTCTCTAAGGATGCTTGTGAGCAAAAATGTTTGGAATAAAATAA--AA-------TAA-----------TATACAACT-------------ATATAAT-----------------------CTGTGTTTTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dp5 4_group3:5033177-5033373 + GTTTCCCATCTCAGGCTCGATGTGAACTGTGGTGTAAGGAATAAGTTTTG-AG-------CGCATCAAAGTGCTAA--ATAAATGAGTGGAAGTTTCCACAAT-----------------------GAATGTATTTTGAAACAGTGGAAACGTGTATTT-----AGCAACCCAATT-TCGCCATAAACTAGGTTATTCTCA------------ATAGAGAATGCTTCTCGACTCAA-AGTAGTATG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTA
droPer2 scaffold_1:6523801-6523862 + GCTTCAATTCTCAGGCTGAATGTGAAGCTAAGTGTTTGGAATAAATTTTGTAG-------TGA-----------CTTAAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droWil2 scf2_1100000004521:9421125-9421179 + GATTTGGTACTAAACAAAAGTGTATGGAAAAATGTGTGCTCTAAGAGTG--GT-------AGA-----------A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droVir3 scaffold_12963:15034065-15034123 - GTTTTTTGAGCCGAAAAGATTGTGAGGACAAGTGCCTGGAGTGAATAC---------------------------CCAAAAAT-------------TGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3 scaffold_6500:17994507-17994572 - GTTTCGAAACTCAGGAACAGTGCGAGGCAAAGTGCAAGGAGTAGATTTA--CT-------TAA-----------ACCAAAAGT-------------TGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2 scaffold_15126:4357988-4358055 - GCTTTGAAACCAAAGAAGTCTGTGAGGAGAGATGCCTCAATTGAATTG---CT-------TGG-----------AATTAAGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAAAGCT----------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
GATTCGATTCGAGGGAAATCTGTGAAGACAAGTGCTTGCAATAAAATTA--GG-------TGA-----------ATCAAAAAT-------------CGAAAGC-----------------------TTATGTATTTCAGTTAGGCATGGGCATGTACTTAATTTGACGCAGCTACT-TTTTGATTTGCTAGCTCTATCTGA------------ATTGAGACT---CCCCGACTTGG-GTCATCATTTTA-ATTGTATAAGATAGACCCCAATTCAAAATATTAAAAGTCCGGACAAACATTTATACTTTGCATTCCCGATGGGCATTACTTGATCTACGG---ATTCGGAGAGACGTTGTTT----------------------TCGAATCTCAAGTTCAAATGAGGCTAGTGGTTCTGGGCTGTSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
........................................................................................................................................................................................................................................................................................TTAAAAGTCCGGACAAAC...............................................................................................................................1812.00200200000000000000
.................................................................................................................................................................................................................................................................................................................................GGCATTACTTGATCTACGG---ATT...............................................................................2211.00110000000000000000
...................................................................................................................................................................................................................................................................................AAATATTAAAAGTCCGGACAAACA..............................................................................................................................2411.00100100000000000000
.....................................................................................................................................................................................................................ATTGAGACT---CCCCGACTTGG-GT..........................................................................................................................................................................................2211.00100000000000100000
..............................................................................................................................................................................................................................................................................................GTCCGGACAAACATTTATAC.......................................................................................................................2011.00110000000000000000
............................................................................................................................................................................................................................................................................................AAGTCCGGACAAACATTTAT.........................................................................................................................2011.00100100000000000000
..........................................................................................................................................................................GCTACT-TTTTGATTTGCTAGT.........................................................................................................................................................................................................................................2111.00100000000000100000
.............................................................................................................................................................................................................................................................................................................................GATGGGCATTACTTGATCTACGG---AT................................................................................2511.00100100000000000000
droSec2
GATTTGATTCGAGGGAAATCTGTGAAGACAAGTGTTTGCAATAAAATTA--GG-------TGA-----------ATCAAAAAT-------------CGAAAGC-----------------------TTATGTATTTCAGTTAGGCATGGGCATGTACTTAATGTGGCGCAGCTACT-TTTTGATTTGCTAGCTCTATCTGA------------ACTGAGACT---C-CCGACTTGG-GTCAT------A-ATCGTATAAGAT------TAATTCAAAATATTAAAAGTCCGGACAAACATTTACACTTTGCATTCCCGATGGGCATAACTTGATCTACGGCGGATTCGGAGAGACGTTGTTT----------------------TCGAATCTCAAGTTCAAATGAGGCTAGTGGTTCTTGGCTGTSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..........................................................................................................................................GTTAGGCATGGGCATGTACTT..........................................................................................................................................................................................................................................................................2111.0010010
.................................GTTTGCAATAAAATTA--GG-------TGA-----------ATC............................................................................................................................................................................................................................................................................................................................................................2411.0011000
........................................................................................................................................................................................................................................................................................................................................CTTGATCTACGGCGGATTCGG............................................................................2111.0010001
.............................AAGTGTTTGCAATAAAATTA--GG-------TGA-----------...............................................................................................................................................................................................................................................................................................................................................................2511.0010100
..................................................................................................................................................TGGGCATGTACTTAATGTGGC..................................................................................................................................................................................................................................................................2111.0010001
....................TGTGAAGACAAGTGTTTGCA.................................................................................................................................................................................................................................................................................................................................................................................................2011.0010001
........................................................................................................................................................................................................................................................................................................................TTCCCGATGGGCATAACTTG.............................................................................................2011.0011000
dm3
GATTTAATTCGAGGGAAATCTGTGAAGACAAGTGTTTGCAATAAAATTA--CG-------TGA-----------ATCAAAAAT-------------TGAAAGC-----------------------TTTTGTATTTCAGTTTGGCATGGTCATGTACTTGATTTGGCGCAGCTACTTTTTTGATTAGCTAGCACAATCTGA------------TCTGAGACT---CACAGACTTGG-TACAT------ACATTGTATAAGA----------TTCAAAATTTTGAAAGTCCGCACAAACATTTCCATTTTGCATTCCCGAGAGGCATTACTTGATCTACGG---ACTCGTAAAGACGTTGTTT----------------------TCGAAACTCAAGTTCAAATGAGGCTAGTGGTTCTTGGCTGTSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
........TCGAGGGAAATCTGTGAAGAC............................................................................................................................................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......TTCGAGGGAAATCTGTGAAGACA...........................................................................................................................................................................................................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................TGTGAAGACAAGTGTTTGC..................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
................AATCTGTGAAGACAAGTG.......................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................TATTTCAGTTTGGCATGGTCA.................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
.................ATCTGTGAAGACAAGTGTTTGC..................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................CAAATGAGGCTAGTGGTTCT.......2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
.............................................ATTA--CG-------TGA-----------ATCAAAAAT-------------TG.......................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................GACAAGTGTTTGCAATAAAATTA--CG-------.............................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................ACTTGATCTACGG---ACTCGTAAAGACGT....................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................TCTGTGAAGACAAGTGTTTGC..................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...TTAATTCGAGGGAAATCTGTG.................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
............GGGAAATCTGTGAAGACATC.........................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
GATTTAATTCGAGGGAAATCTGTGA................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......TTCGAGGGAAATCTGTGA................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........TCGAGGGAAATCTGTGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............GAAATCTGTGAAGACAAGTG.......................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
GATTCAATTCGAGGGAAAACTGTGAAGACAAGTGTTTGCAATAAAAAGG--AA------GATA-----------ATTAAAAAT-------------TGAAAGC-----------------------CTCTGTCTATCAGTTTGGGGTTGCCATGTATTTGCTTTGGCGCAATCATT-TTGTGATAAGCTAGCACTATCTGA------------CCTGAGACT---CACTGATTTGG-TACAG------A-ATTATATAAGAAAGAGCCCAATTCAAGACTTTAGAAGTCTGGACAAGCAGTTCTACTTTGCTCTCCCGATAGCCATCACTTGGTCTACGG---ACTCGGAGACTCATTGCTT----------------------TTGAAACTGAAGTTCCAATGAGGCTAGTTATTCCTTGTTGTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.................AACTGTGAAGACAAGTGTTTGCA.................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000100
GATTCAATTCGAGGGAAAA......................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000100
droYak3
GCTTCGATTCGAGGGAAAACTGCGAAGACAAGTGTTTGCAATAAATCAA--TAAATCAAGTGA-----------ATCAAAAAT-------------TGAAAGA-----------------------TTTTGTATTTTAGTTTGGGATTGCCATGTGCTTGCTTTGGCGCAATCATT-TTTTGATTAGCCAGCATTATCTGA------------ACTGAGACT---CACTGACTTGG-TACATTATA-TA-ATTATATAAGAGAGAGCCCAA----------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
........................................................................................................................................................................................................................GAGACT---CACTGACTTGG-TACATTAT....................................................................................................................................................................................2512.00220000000000
droEug1
GATTTAATTCCAAGGAAAATTGCGAAGCCAGGTGCTGGCCATAAAGTTT--TG-------TAA-----------AACAAAAAC-------------TTTTAAT-----------------------CT------CTTATTTAGAG--------------A---------AATTCTC-T------------TCTCTCTCTCCGAGGCTTTAATCCAGAGCACT---GCTAGATAAGACCGAGC------T-GTTCTCT-----------------------CCCTGTCTT--------TAATTAATCTCTGATTTATAAATGGGCA-TAGTCGCTTAAC------------------------------------------------GAAATCGGAGCCAACATGAAGTACCTTGCTATTGTTTGCSizeHit CountTotal NormTotal
No Reads
droBia1
GATTCAATTCGAAGGAAAACTGCGAAGACAAGTGCTTGGAATAAAATGT--AG-------TGA-----------ATCAGAGAC-------------AAACAAA-----------------------A--TGTATTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
GATTCGATTCCAAGGAAAATTGTGAAGAAAAGTGTTTGCAATAAAATTA--AG-------TGA-----------ACAAAAACT-------------AAAAAAA-----------------------AATTAT-TTTTAATTAGAGATTACTT--TATTTG---TGGCGCAAT---T-------------TGCTATATCTAAA--G--------TCTGAGCTC---CAGTGACCTGC-TA-AT------A------ATAAGATAAAGCTCTA----TAATTTATGAAATA------------------------------------------------------------------------------------------------------------------------------------TTAASizeHit CountTotal NormTotal
No Reads
droEle1
CC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATTGGCATTAGTCGTTCCACAC---AAGCTGGAGAAGATTGTTTGCT----------AAATCACCAC------TACAATCAGTATGAAGTTCATTGCTGTTGTCTGCSizeHit CountTotal NormTotal
No Reads
droRho1
GTTTCGATTCTAAGGAGAATTGTGAAGACAAGTGTTTGCAATAAACATTG-AG-------TGA-----------AACGAAAAC-------------CAATTAATTATTTTATGGGCAACCAGATTCGGGTCTTATCTGCCT------------------------ACTTAGTCATT-T------------GTACTATCTCCAGAGCTCCTTTGACCTACATT---CCCAGATTTGA-AGAGC------C-GTTGTTTGAGGC------GA---TGAAGTGCCCAGAGCTTGGATAA----TTCAGTGTTAGACCTTCGATTGGCATCAGTCGATCCACGG---AAGCTGTGAAAGATTATTTACTCGTATATTTAAAAACAAAAT------CGCAATCATTATGAAGTTCATTGCTGTTGTCTGTSizeHit CountTotal NormTotal
No Reads
droFic1
GATTCAACTCGAAGGAGAATTGTGAAGACAAGTGTTTGCAATAAAATAA--AG-------CAA-----------GTC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
GTTTTGGCTCCAAAGAAGATTGTGAAGAAAAGTGTTTGGAATAAAATGG--AATAAC----AA--------GCTATAAATAAA-------------TAAAAGC-----------------------GTTTCTTTTCTATTTACAT--------------AATATAACTTATTTAAT-ATTTGATATATATATTCTCTCTG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droAna3
CGTTTGCC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTAGTTGTTCCACAGAA-GCTGGAAGAGATATCATTT----------------------TT------AAAATCAGTATGAAGTTCATTGCTGTCGTTTGCSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
......................................................................................................................................................................................................................................................................................................................................TAGTTGTTCCACAGAA-GCTGGAAGAGA.......................................................................2715.005000005
......................................................................................................................................................................................................................................................................................................................................TAGTTGTTCCACAGAA-GCTGGAAGA.........................................................................2513.003000003
..............................................................................................................................................................................................................................................................................................................................................CCACAGAA-GCTGGAAGAGATATC...................................................................2312.002020000
..............................................................................................................................................................................................................................................................................................................................................CCACAGAA-GCTGGAAGAGAT......................................................................2012.002010001
......................................................................................................................................................................................................................................................................................................................................TAGTTGTTCCACAGAA-GCTGGAAG..........................................................................2412.002000002
...........................................................................................................................................................................................................................................................................................................................................................................................................ATCAGTATGAAGTTCATTGCT.........2111.001010000
...............................................................................................................................................................................................................................................................................................................................................CACAGAA-GCTGGAAGAGATAT....................................................................2111.001000010
...........................................................................................................................................................................................................................................................................................................................................................GAAGAGATATCATTT----------------------TT------AAAAT............................2211.001010000
.................................................................................................................................................................................................................................................................................................................................................................................................T------AAAATCAGTATGAAGTTCATT............2211.001000001
.......................................................................................................................................................................................................................................................................................................................................AGTTGTTCCACAGAA-GCT...............................................................................1811.001000001
......................................................................................................................................................................................................................................................................................................................................................................................................................GTTCATTGCTGTCGTTTGC1911.001010000
......................................................................................................................................................................................................................................................................................................................................................................ATTT----------------------TT------AAAATCAGTATGAAGTTC...............2411.001000010
................................................................................................................................................................................................................................................................................................................................................................................................TT------AAAATCAGTATGAAGTT................1911.001010000
......................................................................................................................................................................................................................................................................................................................................TAGTTGTTCCACAGAA-GCTGGA............................................................................2211.001000010
....................................................................................................................................................................................................................................................................................................................................................AA-GCTGGAAGAGATATCATTT----------------------TT------.................................2311.001100000
...............................................................................................................................................................................................................................................................................................................................................CACAGAA-GCTGGAAGAGAT......................................................................1911.001001000
.......................................................................................................................................................................................................................................................................................................................................AGTTGTTCCACAGAA-GCTGGAAG..........................................................................2311.001000010
droBip1
GATTTGTCTCTAAGGATGCTTGTGAGCAAAAATGTTTGGAATAAAATAA--AA-------TAA-----------TATACAACT-------------ATATAAT-----------------------CTGTGTTTTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dp5
GTTTCCCATCTCAGGCTCGATGTGAACTGTGGTGTAAGGAATAAGTTTTG-AG-------CGCATCAAAGTGCTAA--ATAAATGAGTGGAAGTTTCCACAAT-----------------------GAATGTATTTTGAAACAGTGGAAACGTGTATTT-----AGCAACCCAATT-TCGCCATAAACTAGGTTATTCTCA------------ATAGAGAATGCTTCTCGACTCAA-AGTAGTATG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..................................................................................................................................................................................CGCCATAAACTAGGTTATTCTCA------------AT..................................................................................................................................................................................................................2511.0010100000000
droPer2
GCTTCAATTCTCAGGCTGAATGTGAAGCTAAGTGTTTGGAATAAATTTTGTAG-------TGA-----------CTTAAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
GATTTGGTACTAAACAAAAGTGTATGGAAAAATGTGTGCTCTAAGAGTG--GT-------AGA-----------A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..................AGTGTATGGAAAAATGTGTGCTCTAAGA...........................................................................................................................................................................................................................................................................................................................................................................................2811.00100100
...................................GTGCTCTAAGAGTG--GT-------AGA-----------A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------2011.00100100
................................TGTGTGCTCTAAGAGTG--GT-------AGA-----------...............................................................................................................................................................................................................................................................................................................................................................2211.00100100
................................TGTGTGCTCTAAGAGTG--GT-------AG...........................................................................................................................................................................................................................................................................................................................................................................2111.00100100
...........................AAAAATGTGTGCTCTAAGAGTG--GT-------AGA-----------A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------2811.00100100
..................................TGTGCTCTAAGAGTG--GT-------AGA-----------A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------2111.00100100
...............................ATGTGTGCTCTAAGAGTG--GT-------AGA-----------A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------2411.00100100
..............................AATGTGTGCTCTAAGAGTG--GT-------.............................................................................................................................................................................................................................................................................................................................................................................2111.00100100
droVir3
GTTTTTTGAGCCGAAAAGATTGTGAGGACAAGTGCCTGGAGTGAATAC---------------------------CCAAAAAT-------------TGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.........GCCGAAAAGATTGTGAGGACAAGT........................................................................................................................................................................................................................................................................................................................................................................................................2434.67140000000301000000000000000000000000000000100000000000000000000000
...........CGAAAAGATTGTGAGGACAAGT........................................................................................................................................................................................................................................................................................................................................................................................................2233.009000002000300000000000000000001010200000000000000000000000000000
...TTTTGAGCCGAAAAGATTGTGAG...............................................................................................................................................................................................................................................................................................................................................................................................................2313.003000000000300000000000000000000000000000000000000000000000000000
...........CGAAAAGATTGTGAGGAC............................................................................................................................................................................................................................................................................................................................................................................................................1832.678000000010600000000000000000000000100000000000000000000000000000
...TTTTGAGCCGAAAAGATTGTGA................................................................................................................................................................................................................................................................................................................................................................................................................2212.002000000010100000000000000000000000000000000000000000000000000000
..TTTTTGAGCCGAAAAGATTG...................................................................................................................................................................................................................................................................................................................................................................................................................2012.002000000000000000000000000000000000200000000000000000000000000000
..TTTTTGAGCCGAAAAGATTGTGAG...............................................................................................................................................................................................................................................................................................................................................................................................................2412.002000000010100000000000000000000000000000000000000000000000000000
.................GATTGTGAGGACAAGTGCCTG...................................................................................................................................................................................................................................................................................................................................................................................................2131.675000005000000000000000000000000000000000000000000000000000000000
.........GCCGAAAAGATTGTGAGGA.............................................................................................................................................................................................................................................................................................................................................................................................................1931.675000000010400000000000000000000000000000000000000000000000000000
........AGCCGAAAAGATTGTGAG...............................................................................................................................................................................................................................................................................................................................................................................................................1831.675000000010300000000000000000000010000000000000000000000000000000
.........GCCGAAAAGATTGTGAGGACAA..........................................................................................................................................................................................................................................................................................................................................................................................................2231.675000001000200000000000000000002000000000000000000000000000000000
.....................GTGAGGACAAGTGCCTGGAGT...............................................................................................................................................................................................................................................................................................................................................................................................2131.675000002000100000000000000000001000000000100000000000000000000000
............GAAAAGATTGTGAGGACAAGT........................................................................................................................................................................................................................................................................................................................................................................................................2131.675000000000400000000000000000000010000000000000000000000000000000
.................GATTGTGAGGACAAGTGCCTGGAGT...............................................................................................................................................................................................................................................................................................................................................................................................2531.334000002000100000000000000000000000100000000000000000000000000000
..........................GACAAGTGCCTGGAGTGA.............................................................................................................................................................................................................................................................................................................................................................................................1831.334000001000100000000000000000000110000000000000000000000000000000
.......GAGCCGAAAAGATTGTGAGGAC............................................................................................................................................................................................................................................................................................................................................................................................................2231.334000000000000000000000000000002000200000000000000000000000000000
.......................GAGGACAAGTGCCTGGAGT...............................................................................................................................................................................................................................................................................................................................................................................................1931.334000004000000000000000000000000000000000000000000000000000000000
...............AAGATTGTGAGGACAAGTGCCTGGAGT...............................................................................................................................................................................................................................................................................................................................................................................................2731.334000003000000000000000000000000010000000000000000000000000000000
.....................GTGAGGACAAGTGCCTGGA.................................................................................................................................................................................................................................................................................................................................................................................................1941.255000002020000000000000000000000010000000000000000000000000000000
.................GATTGTGAGGACAAGTGCCT....................................................................................................................................................................................................................................................................................................................................................................................................2041.255000004000100000000000000000000000000000000000000000000000000000
..TTTTTGAGCCGAAAAGATTGTGAGGAC............................................................................................................................................................................................................................................................................................................................................................................................................2711.001000000000100000000000000000000000000000000000000000000000000000
......TGAGCCGAAAAGATTGTGAGG..............................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000010000000000000000000000000000000000000000000000000000000
...TTTTGAGCCGAAAAGATTGTGAGGA.............................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000100000000000000000000000000000000000000000000000000000
....................................TGGAGTGAATAC---------------------------CCAAAA........................................................................................................................................................................................................................................................................................................................................................1811.001000000010000000000000000000000000000000000000000000000000000000
......TGAGCCGAAAAGATTGTGAG...............................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000100000000000000000000000000000000000000000000000000000
..............AAAGATTGTGAGGACAAGTGCCTGG..................................................................................................................................................................................................................................................................................................................................................................................................2531.003000001000100000000000000000000010000000000000000000000000000000
............GAAAAGATTGTGAGGACAAGTGCCT....................................................................................................................................................................................................................................................................................................................................................................................................2531.003000001000200000000000000000000000000000000000000000000000000000
.............AAAAGATTGTGAGGACAAGTGC......................................................................................................................................................................................................................................................................................................................................................................................................2231.003000000000100000000000000000000000200000000000000000000000000000
...TTTTGAGCCGAAAAGATTGTG.................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000010
........AGCCGAAAAGATTGTGAGGA.............................................................................................................................................................................................................................................................................................................................................................................................................2031.003000001000200000000000000000000000000000000000000000000000000000
...................TTGTGAGGACAAGTGCCTGGAGT...............................................................................................................................................................................................................................................................................................................................................................................................2331.003000002000100000000000000000000000000000000000000000000000000000
..TTTTTGAGCCGAAAAGAT.....................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000000000000000000000000000001000000000000000000000000000000000
..TTTTTGAGCCGAAAAGATTGTGA................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000010000000000000000000000000000000000000000000000000000000
...........CGAAAAGATTGTGAGGACAA..........................................................................................................................................................................................................................................................................................................................................................................................................2031.003000003000000000000000000000000000000000000000000000000000000000
.....................GTGAGGACAAGTGCCTGGAGTG..............................................................................................................................................................................................................................................................................................................................................................................................2231.003000000000300000000000000000000000000000000000000000000000000000
.....TTGAGCCGAAAAGATTGTGAGG..............................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000010000000000000000000000000000000000000000000000000000000
....................TGTGAGGACAAGTGCCTGGAGT...............................................................................................................................................................................................................................................................................................................................................................................................2231.003000001000100000000001000000000000000000000000000000000000000000
................AGATTGTGAGGACAAGTGCCT....................................................................................................................................................................................................................................................................................................................................................................................................2140.753000000010000000000000000000000000200000000000000000000000000000
...............AAGATTGTGAGGACAAGTGCCT....................................................................................................................................................................................................................................................................................................................................................................................................2230.672000000000200000000000000000000000000000000000000000000000000000
................AGATTGTGAGGACAAGTGCCTGGAGT...............................................................................................................................................................................................................................................................................................................................................................................................2630.672000001000000000000000000000000000000000100000000000000000000000
................AGATTGTGAGGACAAGTGCCTGG..................................................................................................................................................................................................................................................................................................................................................................................................2330.672000001000100000000000000000000000000000000000000000000000000000
.....................GTGAGGACAAGTGCCTGGAGTGA.............................................................................................................................................................................................................................................................................................................................................................................................2330.672000000000100000000000000000000010000000000000000000000000000000
............GAAAAGATTGTGAGGACAA..........................................................................................................................................................................................................................................................................................................................................................................................................1930.672000000000100000000000000000001000000000000000000000000000000000
...........CGAAAAGATTGTGAGGACAAGTGC......................................................................................................................................................................................................................................................................................................................................................................................................2430.672000000000100000000000000000000000000000000000000000000000000010
..............AAAGATTGTGAGGACAAGT........................................................................................................................................................................................................................................................................................................................................................................................................1930.672000001000100000000000000000000000000000000000000000000000000000
.......................GAGGACAAGTGCCTGGAGTGA.............................................................................................................................................................................................................................................................................................................................................................................................2130.672000000000200000000000000000000000000000000000000000000000000000
........AGCCGAAAAGATTGTGAGGACAAGT........................................................................................................................................................................................................................................................................................................................................................................................................2530.672000000010100000000000000000000000000000000000000000000000000000
...............AAGATTGTGAGGACAAGTGCCTGGA.................................................................................................................................................................................................................................................................................................................................................................................................2530.672000000000100000000000000000000010000000000000000000000000000000
..............AAAGATTGTGAGGACAAGTGC......................................................................................................................................................................................................................................................................................................................................................................................................2130.672000000000100000000000000000000000000000000000000000000000000010
..................ATTGTGAGGACAAGTGCCT....................................................................................................................................................................................................................................................................................................................................................................................................1940.502000001000100000000000000000000000000000000000000000000000000000
........AGCCGAAAAGATTGTGAGGAC............................................................................................................................................................................................................................................................................................................................................................................................................2130.331000000000100000000000000000000000000000000000000000000000000000
............................CAAGTGCCTGGAGTGAATAC---------------------------C.............................................................................................................................................................................................................................................................................................................................................................2130.331000000000000000000000000000000010000000000000000000000000000000
..................ATTGTGAGGACAAGTGCCTGGAGT...............................................................................................................................................................................................................................................................................................................................................................................................2430.331000000000000000000000000000000000100000000000000000000000000000
........AGCCGAAAAGATTGTGAGGACAA..........................................................................................................................................................................................................................................................................................................................................................................................................2330.331000000000100000000000000000000000000000000000000000000000000000
.........GCCGAAAAGATTGTGAGG..............................................................................................................................................................................................................................................................................................................................................................................................................1830.331000000000100000000000000000000000000000000000000000000000000000
.......GAGCCGAAAAGATTGTGAGGA.............................................................................................................................................................................................................................................................................................................................................................................................................2130.331000000000100000000000000000000000000000000000000000000000000000
..................ATTGTGAGGACAAGTGCCTGG..................................................................................................................................................................................................................................................................................................................................................................................................2130.331000001000000000000000000000000000000000000000000000000000000000
.......GAGCCGAAAAGATTGTGA................................................................................................................................................................................................................................................................................................................................................................................................................1830.331000000000000000000000000000000010000000000000000000000000000000
.............AAAAGATTGTGAGGACAA..........................................................................................................................................................................................................................................................................................................................................................................................................1830.331000000000000000000000000000000000100000000000000000000000000000
.......GAGCCGAAAAGATTGTGAGGACAAGT........................................................................................................................................................................................................................................................................................................................................................................................................2630.331000000000100000000000000000000000000000000000000000000000000000
............GAAAAGATTGTGAGGACAAGTG.......................................................................................................................................................................................................................................................................................................................................................................................................2230.331000000000100000000000000000000000000000000000000000000000000000
.................GATTGTGAGGACAAGTGCCTGG..................................................................................................................................................................................................................................................................................................................................................................................................2230.331000000000000000000000000000000000100000000000000000000000000000
.................GATTGTGAGGACAAGTGCCTGGA.................................................................................................................................................................................................................................................................................................................................................................................................2330.331000000000000000000000000000000000100000000000000000000000000000
...................TTGTGAGGACAAGTGCCTGGAGTG..............................................................................................................................................................................................................................................................................................................................................................................................2430.331000001000000000000000000000000000000000000000000000000000000000
.................GATTGTGAGGACAAGTGCCTGGAGTGA.............................................................................................................................................................................................................................................................................................................................................................................................2730.331000001000000000000000000000000000000000000000000000000000000000
.................GATTGTGAGGACAAGTGCCTGGAG................................................................................................................................................................................................................................................................................................................................................................................................2430.331000000010000000000000000000000000000000000000000000000000000000
.........GCCGAAAAGATTGTGAGGAC............................................................................................................................................................................................................................................................................................................................................................................................................2030.331000000010000000000000000000000000000000000000000000000000000000
..........CCGAAAAGATTGTGAGGACAAGT........................................................................................................................................................................................................................................................................................................................................................................................................2330.331000000010000000000000000000000000000000000000000000000000000000
.......GAGCCGAAAAGATTGTGAGGACAA..........................................................................................................................................................................................................................................................................................................................................................................................................2430.331000000000100000000000000000000000000000000000000000000000000000
...............AAGATTGTGAGGACAAGTGCCTG...................................................................................................................................................................................................................................................................................................................................................................................................2330.331000001000000000000000000000000000000000000000000000000000000000
...............AAGATTGTGAGGACAAGTGC......................................................................................................................................................................................................................................................................................................................................................................................................2030.331000000000000000000000000000000010000000000000000000000000000000
...................TTGTGAGGACAAGTGCCTGGAGTGA.............................................................................................................................................................................................................................................................................................................................................................................................2530.331000000000000000000000000000000010000000000000000000000000000000
................AGATTGTGAGGACAAGTGCCTGGA.................................................................................................................................................................................................................................................................................................................................................................................................2430.331000000000100000000000000000000000000000000000000000000000000000
.........GCCGAAAAGATTGTGAGGACAC..........................................................................................................................................................................................................................................................................................................................................................................................................2230.331000001000000000000000000000000000000000000000000000000000000000
...........CGAAAAGATTGTGAGGACAAG.........................................................................................................................................................................................................................................................................................................................................................................................................2130.331000001000000000000000000000000000000000000000000000000000000000
.........GCCGAAAAGATTGTGAGGACA...........................................................................................................................................................................................................................................................................................................................................................................................................2130.331000000000100000000000000000000000000000000000000000000000000000
......................TGAGGACAAGTGCCTGGAGTG..............................................................................................................................................................................................................................................................................................................................................................................................2130.331000000000000000000000000000000010000000000000000000000000000000
............GAAAAGATTGTGAGGACAAG.........................................................................................................................................................................................................................................................................................................................................................................................................2030.331000000000000000000000000000000010000000000000000000000000000000
.........GCCGAAAAGATTGTGAGGACAAG.........................................................................................................................................................................................................................................................................................................................................................................................................2330.331000000000000000000000000000000010000000000000000000000000000000
............GAAAAGATTGTGAGGACAAGTGCCTG...................................................................................................................................................................................................................................................................................................................................................................................................2630.331000001000000000000000000000000000000000000000000000000000000000
..................ATTGTGAGGACAAGTGCCTGGAG................................................................................................................................................................................................................................................................................................................................................................................................2330.331000000000100000000000000000000000000000000000000000000000000000
............GAAAAGATTGTGAGGACAAGTGCCTGG..................................................................................................................................................................................................................................................................................................................................................................................................2730.331000000000100000000000000000000000000000000000000000000000000000
..............AAAGATTGTGAGGACAAGTGCCT....................................................................................................................................................................................................................................................................................................................................................................................................2330.331000001000000000000000000000000000000000000000000000000000000000
................AGATTGTGAGGACAAGTGCCTG...................................................................................................................................................................................................................................................................................................................................................................................................2230.331000000000100000000000000000000000000000000000000000000000000000
.........GCCGAAAAGATTGTGAGGACAAGTGCCT....................................................................................................................................................................................................................................................................................................................................................................................................2830.331000000000100000000000000000000000000000000000000000000000000000
.......GAGCCGAAAAGATTGTGAG...............................................................................................................................................................................................................................................................................................................................................................................................................1930.331000001000000000000000000000000000000000000000000000000000000000
...........CGAAAAGATTGTGAGGACA...........................................................................................................................................................................................................................................................................................................................................................................................................1930.331000000000100000000000000000000000000000000000000000000000000000
.........GCCGAAAAGATTGTGAGGACAAGTG.......................................................................................................................................................................................................................................................................................................................................................................................................2530.331000000000100000000000000000000000000000000000000000000000000000
.....................GTGAGGACAAGTGCCTGGAG................................................................................................................................................................................................................................................................................................................................................................................................2030.331000001000000000000000000000000000000000000000000000000000000000
...................TTGTGAGGACAAGTGCCT....................................................................................................................................................................................................................................................................................................................................................................................................1840.251000000000100000000000000000000000000000000000000000000000000000
droMoj3
GTTTCGAAACTCAGGAACAGTGCGAGGCAAAGTGCAAGGAGTAGATTTA--CT-------TAA-----------ACCAAAAGT-------------TGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.....GAAACTCAGGAACAGTGCGAGGC.............................................................................................................................................................................................................................................................................................................................................................................................................2311.001000001
...................GTGCGAGGCAAAGTGCAAGGAGTA..............................................................................................................................................................................................................................................................................................................................................................................................2420.501000001
droGri2
GCTTTGAAACCAAAGAAGTCTGTGAGGAGAGATGCCTCAATTGAATTG---CT-------TGG-----------AATTAAGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAAAGCT----------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/19/2015 at 11:00 AM