ID:

dsi_1638

 Coordinate:

2r:5840642-5840791 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-16.3 -16.2

Flybase annnotation

CDS [2r_5840792_5840969_-]; exon [2r_5840792_5841082_-]; intron [2r_5840414_5840791_-]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
CGAGGACGAACTGAATATAGCCCGCAAGAATGCGTCCAAAAACAAAAGAGGTATGCATGGAGTCCGACGAGGTCCTTGGAGTCCTAGTTGGTCACTCAGGTGGGACAAGGGGAATGACTCATTGCTTTGTTTTTGTTGCGGCCGCGAGGCCTCCTCCCAGTTAATCAGTATCCCATACTGCCAGCAAATAGAAAACTCAATAAACAATATGTATCTCTTTGCCTTTTCACCCGCATACCATTCGATGCCT
**************************************************((.......(((.(((((..((..........))..)))))...))).......))************************************************************************************************************************************************ 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 M025
embryo
 M023
head
 M053
female body
 SRR553487
NRT_0-2 hours eggs
 GSM343915
embryo
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
.....................................................................................AGTTGGGCACTCTGGTGAGAC................................................................................................................................................ 21 3 3 14.67 44 37 0 5 2 0 0 0 0 0
......................................................................................GTTGGTCACTCTGGTGAGAC................................................................................................................................................ 20 2 1 3.00 3 1 0 2 0 0 0 0 0 0
CGAGGACGAACTGAATATAGCCC................................................................................................................................................................................................................................... 23 0 1 3.00 3 0 3 0 0 0 0 0 0 0
..........CTGAATATAGCCCGCAAGAATGC......................................................................................................................................................................................................................... 23 0 1 2.00 2 0 2 0 0 0 0 0 0 0
CGAGGACGAACTGAATAT........................................................................................................................................................................................................................................ 18 0 1 2.00 2 0 2 0 0 0 0 0 0 0
.....................................................................................AGTTGGGCACTCTGGTGAGA................................................................................................................................................. 20 3 14 1.79 25 22 0 2 1 0 0 0 0 0
............GAATATAGCCCGCAAGAATGCGTCCAA................................................................................................................................................................................................................... 27 0 1 1.00 1 0 0 0 1 0 0 0 0 0
................................................................................................CTGGTCGGACAAGGGGAAT....................................................................................................................................... 19 2 3 1.00 3 3 0 0 0 0 0 0 0 0
CGAGGACGAACTGAATATA....................................................................................................................................................................................................................................... 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0
......................................................................................GTTGGGCACTCTGGTGGGAC................................................................................................................................................ 20 2 1 1.00 1 1 0 0 0 0 0 0 0 0
CGAGGACGAACTGAATATAGCC.................................................................................................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..........CTGAATATAGCCCGCAAGAATGCGTCC..................................................................................................................................................................................................................... 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0
..................................................GTATGCATGGAGTCCGACGA.................................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 1 0 0 0 0 0
.........ACTGAATATAACCCGCAAGAATG.......................................................................................................................................................................................................................... 23 1 1 1.00 1 0 1 0 0 0 0 0 0 0
..AGGACGAACTGCATTTAGCC.................................................................................................................................................................................................................................... 20 2 1 1.00 1 0 0 0 0 1 0 0 0 0
.......................................................................................TTGGTCACTCAGGTGGGAC................................................................................................................................................ 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0
...............................................................................................................................TGTTTTAGTTGCGGCCGC......................................................................................................... 18 1 1 1.00 1 1 0 0 0 0 0 0 0 0
......................................................................................................................................................CTCCTCCCAGTTAATCAGT................................................................................. 19 0 1 1.00 1 0 0 0 0 0 1 0 0 0
.....ACGAACTGAATATAGCCC................................................................................................................................................................................................................................... 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0
...........................................................GAGTCCGACGAGGTCCTTGGA.......................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0
................................................................................................CTGGTAGGACAAGGGGAAT....................................................................................................................................... 19 2 3 0.67 2 1 0 0 1 0 0 0 0 0
...................................................................................................GTAGGACAAGGGGAATCT..................................................................................................................................... 18 3 20 0.60 12 9 1 2 0 0 0 0 0 0
..................................................................................................GGTAGGACAAGGGGAATCT..................................................................................................................................... 19 3 10 0.50 5 3 0 2 0 0 0 0 0 0
......................................................................................................GGACAAGGGGAATGACTGT................................................................................................................................. 19 2 3 0.33 1 1 0 0 0 0 0 0 0 0
......................................................................................GTTGGTCACTCTGGTGAGACT............................................................................................................................................... 21 3 3 0.33 1 0 0 0 1 0 0 0 0 0
.......................................................................................................GACAAGGGGAATGACTGT................................................................................................................................. 18 2 7 0.29 2 2 0 0 0 0 0 0 0 0
................................................................................................CTGGTAGGACAAGGGGAATC...................................................................................................................................... 20 3 4 0.25 1 1 0 0 0 0 0 0 0 0
......................................................................................GTTGGTCACTCTGGTGAG.................................................................................................................................................. 18 2 8 0.25 2 0 0 2 0 0 0 0 0 0
..................................................................................................GGTCGGACAAGGGGAATC...................................................................................................................................... 18 2 4 0.25 1 1 0 0 0 0 0 0 0 0
.............................................................GTCCGACGAATTCCTTGGGG......................................................................................................................................................................... 20 3 7 0.14 1 0 0 0 0 1 0 0 0 0
.......................................................................................TTGGGCACTCAGGTGAGACT............................................................................................................................................... 20 3 7 0.14 1 0 0 1 0 0 0 0 0 0
.................................................................GACGAGGTGCTTGGACT........................................................................................................................................................................ 17 2 10 0.10 1 0 0 0 0 0 0 0 0 1
....................................................................................AAGTTGGGCACTCTGGTGGG.................................................................................................................................................. 20 3 12 0.08 1 1 0 0 0 0 0 0 0 0
...............................................................................................ACTGGTCGGACAAGGGGAAT....................................................................................................................................... 20 3 12 0.08 1 0 0 1 0 0 0 0 0 0
.................................................................................TCCTAGTTCCTCACTCA........................................................................................................................................................ 17 2 12 0.08 1 0 0 0 0 0 0 0 1 0
.............................................................GTCCGACGAATTCCTTGGG.......................................................................................................................................................................... 19 3 13 0.08 1 0 0 0 0 0 0 1 0 0
.....................................................................................AGTTGGGCACTCTGGTGG................................................................................................................................................... 18 2 13 0.08 1 1 0 0 0 0 0 0 0 0
............................................ACAGGGGTATGCATGGA............................................................................................................................................................................................. 17 2 15 0.07 1 0 0 0 0 0 0 1 0 0
..............................................................TCCGACGAATTCCTTGG........................................................................................................................................................................... 17 2 16 0.06 1 0 0 0 0 0 0 0 1 0
.......................................................................................TTGGGCACTCTAGTGGGAC................................................................................................................................................ 19 3 16 0.06 1 0 0 1 0 0 0 0 0 0
CGAGGGCGAACTGAA........................................................................................................................................................................................................................................... 15 1 17 0.06 1 0 0 0 0 0 0 1 0 0
..................................................................................................GGTCGGACAAGGGGAATCT..................................................................................................................................... 19 3 18 0.06 1 1 0 0 0 0 0 0 0 0
...................................................................................................TACGGACAAGGGGAATGAC.................................................................................................................................... 19 3 18 0.06 1 1 0 0 0 0 0 0 0 0
..................................................................................................GTTCGGACAAGGGGAATC...................................................................................................................................... 18 3 20 0.05 1 1 0 0 0 0 0 0 0 0

Anti-sense strand reads

GCTCCTGCTTGACTTATATCGGGCGTTCTTACGCAGGTTTTTGTTTTCTCCATACGTACCTCAGGCTGCTCCAGGAACCTCAGGATCAACCAGTGAGTCCACCCTGTTCCCCTTACTGAGTAACGAAACAAAAACAACGCCGGCGCTCCGGAGGAGGGTCAATTAGTCATAGGGTATGACGGTCGTTTATCTTTTGAGTTATTTGTTATACATAGAGAAACGGAAAAGTGGGCGTATGGTAAGCTACGGA
************************************************************************************************************************************************((.......(((.(((((..((..........))..)))))...))).......))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 M053
female body
 SRR553485
Chicharo_3 day-old ovaries
 M023
head
 SRR553488
RT_0-2 hours eggs
...................CGGACGTTCTTTCTCAGGTTTT................................................................................................................................................................................................................. 22 3 2 2.00 4 4 0 0 0 0 0 0
........................................................................................................................................................................ATAGGGTACGACGGTC.................................................................. 16 1 1 1.00 1 0 1 0 0 0 0 0
.TTCCTGCTTGACGTAAATCGG.................................................................................................................................................................................................................................... 21 3 4 0.75 3 0 0 3 0 0 0 0
.............................................................................................TCAGACCACCCCGTTCCCCTTA....................................................................................................................................... 22 3 2 0.50 1 0 0 0 1 0 0 0
..........................................................................................................................................................................AGGGTATGACGGTCG................................................................. 15 0 2 0.50 1 0 0 0 0 1 0 0
.............................................................................................TCAGACCACCCCGTTCCCCTT........................................................................................................................................ 21 3 5 0.20 1 0 0 0 0 0 1 0
....................GGACGTTCTTCCTCAGGTTTT................................................................................................................................................................................................................. 21 3 5 0.20 1 1 0 0 0 0 0 0
....................GGACGTTCTTTCTCAGGTTTT................................................................................................................................................................................................................. 21 3 9 0.11 1 1 0 0 0 0 0 0
........................................................................................................................................ACGCGGGCGCTACGGAG................................................................................................. 17 2 10 0.10 1 0 0 0 0 0 0 1
...............................................CTCCTTACGTACCTCTG.......................................................................................................................................................................................... 17 2 14 0.07 1 0 1 0 0 0 0 0
.....................................................................................................CCCTGTTCCCGTTAC...................................................................................................................................... 15 1 17 0.06 1 0 0 0 0 0 0 1
...........................................................................................................................................CCGGCGGTCCGTAGGGGGG............................................................................................ 19 3 20 0.05 1 0 1 0 0 0 0 0

Generated: 04/24/2015 at 01:07 AM