ID:

dsi_16333

 Coordinate:

3r:10139934-10140083 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-29.3 -28.7 -28.7

Flybase annnotation

CDS [3r_10139868_10139933_+]; exon [3r_10139672_10139933_+]; intron [3r_10139934_10140494_+]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
CCCAGATCGGTGTGAACAGGAACTTGCAGAAGCAAGACCTCAGCAACTTGGTAAGCAGCCCGCAAAGACGACCGCCAGACGCCGCCTTCCCTTTTTTTTCCGCCCGTGTGTGAAAGTATACGCGTCGTCATTATGGAGCCGCTTCCCGGAAAAACGGCGGGGTGCGGGACAAAAGGACGCGCCCAGATTGTCTCAAACGGTCCACGGATCAATTTCGCCAGATATACCAGTGGGTTTCGCCAGGGCCAGC
*************************************************************************************************.......((((((((....)))))))).((((.((.((...((((.(((((.........))))).))))..)).)).))))....******************************************************************* 		Read size # Mismatch Hit Count Total Norm Total O001
Testis
 SRR902009
testis
 M025
embryo
 SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 GSM343915
embryo
 M023
head
 M024
male body		 SRR902008
ovaries
 SRR553488
RT_0-2 hours eggs
 M053
female body
 O002
Head
........................................................................................................................................AGTCGCTTCCCGGAAAACC............................................................................................... 19 2 2 5.50 11 9 0 0 0 0 0 0 0 0 0 0 0 0 2
.........................................................................................................................................GTCGCTTCCCGGAAAACC............................................................................................... 18 2 4 3.25 13 11 0 1 0 0 0 1 0 0 0 0 0 0 0
..........TGTGAACAGGAACTTGCAGAA........................................................................................................................................................................................................................... 21 0 1 3.00 3 0 3 0 0 0 0 0 0 0 0 0 0 0 0
...........GTGAACAGGAACTTGCAGAAGC......................................................................................................................................................................................................................... 22 0 1 3.00 3 0 0 1 0 0 0 0 0 0 2 0 0 0 0
........................TGCAGAAACAAGACCTCAGCAACTTGGA...................................................................................................................................................................................................... 28 2 1 2.00 2 0 0 0 1 0 1 0 0 0 0 0 0 0 0
........................TGCAGAAGCAAGACCTCAGCAACTTGGA...................................................................................................................................................................................................... 28 1 1 2.00 2 0 0 0 0 0 2 0 0 0 0 0 0 0 0
.....................................................................................................................................................................GGGACAAAAGGACGCGCC................................................................... 18 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................ACCAGTCGGGTTCGCAAGGGCC... 22 3 1 2.00 2 0 0 0 0 2 0 0 0 0 0 0 0 0 0
.......................................................................................................................................CAGTCGCTTCCCGGAAAACC............................................................................................... 20 3 6 1.17 7 6 0 0 0 0 0 0 0 0 0 0 0 0 1
..............................AACAAGACCTCAGCAACTTGG....................................................................................................................................................................................................... 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................TTCCGCCCGTGTGTGAAAGTA.................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...........GTGAACAGGAACTTGCAGAAGCAAT...................................................................................................................................................................................................................... 25 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0
......TCGGTGTGAACAGGAACTTGCAGAAA.......................................................................................................................................................................................................................... 26 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0
..........TGTGAGCAGGAACTTGCAGAA........................................................................................................................................................................................................................... 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................GTGAAAGTATACGCGTCGTCA........................................................................................................................ 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................ACAAAAGGACGCGCCCAGATTGTC.......................................................... 24 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
...........GTGAACAGGAACTTGCAGAA........................................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................................TGTGTGAAAGTATACGCGTCG........................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.................AGGAACTTGCAGAAGCA........................................................................................................................................................................................................................ 17 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
..............................................................CAAAGACGACCGCCAGAC.......................................................................................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.................AGGAACTTGCAGAAACA........................................................................................................................................................................................................................ 17 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.............GAACAGGAACTTGCAGAA........................................................................................................................................................................................................................... 18 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
................................................................................................................AAAGTATACGCGTCGTCATTA..................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.CCAGATCGGTGTGAAC......................................................................................................................................................................................................................................... 16 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
...........................................................................................................................................................GGCGGGGCGCGGGACA............................................................................... 16 1 3 1.00 3 0 0 0 0 3 0 0 0 0 0 0 0 0 0
.....ATCGGTGTGAACAGGAAC................................................................................................................................................................................................................................... 18 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0
..........................CAGAAGCAAGACCTCAGCAACTTGGAC..................................................................................................................................................................................................... 27 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................AGTCGCTTCCCGGGAAAAC............................................................................................... 19 2 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
.....ATCGGTGTGAACAGGAACTTGCAGAAACA........................................................................................................................................................................................................................ 29 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
................................................................AAGACGACCGCCAGACGCC....................................................................................................................................................................... 19 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.................................................................................................................................................................................................................................ACCAGTCGGGTTCGCAAGGGC.... 21 3 2 1.00 2 0 0 0 0 1 0 0 0 0 0 0 1 0 0
........................................................................................................................................AGCCGCTTCCCGGGAAACC............................................................................................... 19 2 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
...........................AGAAGCAAGACCTCAGCAACTTGGA...................................................................................................................................................................................................... 25 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0
.............................................................................................................................................................................................................................ATATACCAGTGCGTTTAGC.......... 19 2 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
........................TGCAGAAGCAAGACCTCAGCAACT.......................................................................................................................................................................................................... 24 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
......TCGGTGTGAACAGGAACTTGCAGAAACA........................................................................................................................................................................................................................ 28 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0
...................................GACCTCAGCAACTTGGAC..................................................................................................................................................................................................... 18 2 6 0.67 4 0 0 4 0 0 0 0 0 0 0 0 0 0 0
.................................AAGACCTCAGCAACTTGGAC..................................................................................................................................................................................................... 20 2 3 0.67 2 0 0 2 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................AGTCGCTTCCCGGAAAAC................................................................................................ 18 2 5 0.60 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................GTCGCTTCCCGGGAAACCG.............................................................................................. 19 3 19 0.58 11 0 0 3 0 0 0 1 0 5 1 0 0 1 0
.........................................................................................................................................GCCGCTTCCCGGGAAACC............................................................................................... 18 2 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................AGTCGCTTCCCGGGAAACCG.............................................................................................. 20 3 7 0.29 2 0 0 0 0 0 0 0 0 0 0 0 0 2 0
............................................................................................................................................................GCGGGGCGCGGGACA............................................................................... 15 1 4 0.25 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
...........................................................................CAGACGGCGCCCTCCCTCTT........................................................................................................................................................... 20 3 5 0.20 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
.........................................................................................................................................GTCGCTTCCCGGGAAAAC............................................................................................... 18 2 5 0.20 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................GGCGGGGCGCGGGAC................................................................................ 15 1 5 0.20 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................AGTCGCTTCCCGGGAAAA................................................................................................ 18 2 6 0.17 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0
..........................................................................................................................................................CGGCGGGGCGCGGGA................................................................................. 15 1 6 0.17 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................CAGTCGGGTTCGCAAGGGC.... 19 3 19 0.16 3 0 0 0 0 3 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................GGCGGGGCGCGGGACAT.............................................................................. 17 2 13 0.15 2 0 0 0 0 1 0 0 0 0 0 0 1 0 0
................................................................AATACGACCGTCAGAC.......................................................................................................................................................................... 16 2 20 0.15 3 0 0 0 3 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................CGGCCGGGTGCGGGA................................................................................. 15 1 7 0.14 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................CAGTCGCTTCCCGGAAAA................................................................................................. 18 2 8 0.13 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................ACCAGTCGGGTTCGCAAGG...... 19 3 11 0.09 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
............TGAACGGGAACTTGCAGATT.......................................................................................................................................................................................................................... 20 3 17 0.06 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................CAGTCGCTTCCCGGGAAAA................................................................................................ 19 3 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
..................................................................................................................................................CGGGTAAACGGCGGGGTA...................................................................................... 18 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0
........................................................................................................................................AGTCGCTTCCCGGACA.................................................................................................. 16 2 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
........................................................................................................................................AGGCGCTTCCCGAAAAACC............................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0

Anti-sense strand reads

GGGTCTAGCCACACTTGTCCTTGAACGTCTTCGTTCTGGAGTCGTTGAACCATTCGTCGGGCGTTTCTGCTGGCGGTCTGCGGCGGAAGGGAAAAAAAAGGCGGGCACACACTTTCATATGCGCAGCAGTAATACCTCGGCGAAGGGCCTTTTTGCCGCCCCACGCCCTGTTTTCCTGCGCGGGTCTAACAGAGTTTGCCAGGTGCCTAGTTAAAGCGGTCTATATGGTCACCCAAAGCGGTCCCGGTCG
*******************************************************************.......((((((((....)))))))).((((.((.((...((((.(((((.........))))).))))..)).)).))))....************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 O001
Testis
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 M024
male body		 M023
head
..................................................................................GCGGAAGGGAAAAAAAAGGCG................................................................................................................................................... 21 0 1 2.00 2 2 0 0 0 0 0 0 0
...............................................................................................................................................................................ATGCGCGGGTCTAACAGAGTTT..................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0
....................................TGGAGTCGTTGAACCATT.................................................................................................................................................................................................... 18 0 1 1.00 1 0 1 0 0 0 0 0 0
.............................................................................................................CACTTTCATATGCGCAGCAGT........................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0
.................................................................TCTCCTGGCGGTCTGCGGCG..................................................................................................................................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0 0
.........................................................................................................CACACACTTTCATATGCGC.............................................................................................................................. 19 0 1 1.00 1 0 1 0 0 0 0 0 0
..........................................................................................................................GCAGCAGTAATACCTCGGCGA........................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0
...............................................................................................................................................................................................GAGTGTGGCAGGTGCC........................................... 16 2 20 0.35 7 0 0 0 7 0 0 0 0
........................................................................................................................................TCGGCGATGGGCCTTTT................................................................................................. 17 1 3 0.33 1 0 0 1 0 0 0 0 0
...............................................................................................................................................................................................GAGTTTGGCAGGTGCC........................................... 16 1 4 0.25 1 0 0 0 0 1 0 0 0
............................................................................................AAAAAAAGGCGGGCCCCC............................................................................................................................................ 18 2 5 0.20 1 0 0 0 0 0 1 0 0
......................................................................................................................................................................................................CCTGGTGCCTAGATAAAACG................................ 20 3 7 0.14 1 0 0 0 0 0 0 1 0
.......................................................................GGCAGTCTCCGGCGGAAGT................................................................................................................................................................ 19 3 8 0.13 1 0 0 0 1 0 0 0 0
......................GGACGGCTTCGTTCTGG................................................................................................................................................................................................................... 17 2 9 0.11 1 0 0 1 0 0 0 0 0
..................................................CAGTAGTCGGGCGTTTATG..................................................................................................................................................................................... 19 3 20 0.10 2 0 0 0 0 0 0 0 2
.....................................................................................................................................ACCCCCGCGAAGGCCCTTT.................................................................................................. 19 3 20 0.10 2 0 0 0 0 2 0 0 0
............................CTTCGTTCTGGTGTC............................................................................................................................................................................................................... 15 1 10 0.10 1 0 0 1 0 0 0 0 0
........................................................................................................................................................................................TCTCACAGAGTTTGC................................................... 15 1 14 0.07 1 0 0 1 0 0 0 0 0
...........................................................................................AAAAAAAAAGCGGGCGCAC............................................................................................................................................ 19 2 15 0.07 1 1 0 0 0 0 0 0 0
.................................................CTAGTCGTCGGGCGTTT........................................................................................................................................................................................ 17 2 20 0.05 1 0 0 0 1 0 0 0 0

Generated: 04/24/2015 at 10:30 AM