dsi_16290

exon [3l_9524567_9524831_+]; five_prime_UTR [3l_9524567_9524753_+]; intron [3l_9517069_9524566_+]

Name	Class	Family	Strand
AT_rich	Low_complexity	Low_complexity	+

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## TGGTTTTTATTGCGCTCGGTACTTATATTTTCGTTCAATTGGCCTCCTTAGCAGTGACAAAAAATAAAAACACACACAAAAACCAGCAACACTCGAAGTTGTTTATTAATGAAATTGCGTTCCATCCACGCCATACTCGTCTCTGTTTCGAATTTTCTTTATTTCTCATTTTATTTATTAATTTTTTTTTTTACTTTCAGGGCGTTGAATTCGCTGCCCCGAATGCCGAGATTCTTGGAGCATCCACAGT ************************************************((((.(((..........................((((((.......)))))).............((((.......)))).......))).))))......................................................************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M053 female body	SRR618934 dsim w501 ovaries	M023 head	SRR553487 NRT_0-2 hours eggs	SRR553486 Makindu_3 day-old ovaries	SRR553488 RT_0-2 hours eggs	GSM343915 embryo	SRR553485 Chicharo_3 day-old ovaries	M024 male body
...................................................................................................................................................................................................AGAAGGGCGTTGAATTCGCTGCCCCG.............................	26	3	1	1.00	1	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................TAGTTTCAGGGCGTTGA..........................................	17	1	1	1.00	1	0	1	0	0	0	0	0	0	0
......................................................................................................................................................................................................AGGGCGTTGAATTCGCTGCCCCGAAT..........................	26	0	1	1.00	1	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................AGGGCGTTGAATTCGCTGCCCCGAA...........................	25	0	1	1.00	1	1	0	0	0	0	0	0	0	0
....................................................AGTGACAAAAAATAACAATACA................................................................................................................................................................................	22	2	2	0.50	1	1	0	0	0	0	0	0	0	0
..................................................GTAGTGACGAAAAATAAAA.....................................................................................................................................................................................	19	2	7	0.43	3	0	0	2	0	1	0	0	0	0
...........................................................................................................................................................................TATTTATTAAGTTTGTTTTTTA.........................................................	22	2	4	0.25	1	0	0	0	1	0	0	0	0	0
............................TTTCGGTCAATTGGCC..............................................................................................................................................................................................................	16	1	7	0.14	1	0	1	0	0	0	0	0	0	0
..................................................GTAGTGACGAAAAATAAA......................................................................................................................................................................................	18	2	14	0.14	2	0	1	0	0	0	0	0	1	0
..................................................GTAGTGACAAAAAATAAC......................................................................................................................................................................................	18	2	15	0.13	2	0	0	1	0	0	0	0	0	1
.................................................................................ACCACCAACATTCGAAATTGT....................................................................................................................................................	21	3	8	0.13	1	0	0	0	0	0	0	1	0	0
....................................................AGTGACGAAAAATAA.......................................................................................................................................................................................	15	1	20	0.10	2	0	1	0	0	0	0	0	1	0
.....................................................................................................................................................................TGATTGTAATTATTAATTTTTTTTT............................................................	25	3	11	0.09	1	0	0	0	0	0	1	0	0	0
......TTATTTCGCTCGGTA.....................................................................................................................................................................................................................................	15	1	20	0.05	1	0	0	0	0	1	0	0	0	0
...................................................TAGTGACGAAAAATAAAA.....................................................................................................................................................................................	18	2	20	0.05	1	0	1	0	0	0	0	0	0	0
............................................TCCTGATCAGCGACAAAAAA..........................................................................................................................................................................................	20	3	20	0.05	1	0	0	0	0	1	0	0	0	0
...........................................................................ACGAAACCCTGCAACACTC............................................................................................................................................................	19	3	20	0.05	1	0	0	0	0	0	1	0	0	0
......TTATTTCGCTCGGTACT...................................................................................................................................................................................................................................	17	1	20	0.05	1	0	0	0	0	0	1	0	0	0
...............................................................................................................AAATTGCGTACCATCCCG.........................................................................................................................	18	3	20	0.05	1	0	1	0	0	0	0	0	0	0

ACCAAAAATAACGCGAGCCATGAATATAAAAGCAAGTTAACCGGAGGAATCGTCACTGTTTTTTATTTTTGTGTGTGTTTTTGGTCGTTGTGAGCTTCAACAAATAATTACTTTAACGCAAGGTAGGTGCGGTATGAGCAGAGACAAAGCTTAAAAGAAATAAAGAGTAAAATAAATAATTAAAAAAAAAAATGAAAGTCCCGCAACTTAAGCGACGGGGCTTACGGCTCTAAGAACCTCGTAGGTGTCA ************************************************((((.(((..........................((((((.......)))))).............((((.......)))).......))).))))......................................................************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	O002 Head	SRR553486 Makindu_3 day-old ovaries	SRR618934 dsim w501 ovaries	M025 embryo	M053 female body
..............GTGCAATGAATATAAAAG..........................................................................................................................................................................................................................	18	2	19	1.21	23	21	0	1	0	1
.......................................................................................................................................................................................AAAAAAAAATGTCAGTCCC................................................	19	2	6	0.17	1	0	1	0	0	0
.................................................................................................CAACAACTAATTACTT.........................................................................................................................................	16	1	9	0.11	1	0	1	0	0	0
......................................................................................................................................................................................AAAAAAAAAATGTAAGTC..................................................	18	1	9	0.11	1	0	0	0	1	0
...............................................................................................................................TGCGGTATGAGACGAGGC.........................................................................................................	18	3	20	0.10	2	2	0	0	0	0
...................................................................TTTGTGTGTGTTTTTG.......................................................................................................................................................................	16	0	11	0.09	1	0	0	1	0	0
..................................................................TTTTGTGTGTGTTTTT........................................................................................................................................................................	16	0	16	0.06	1	0	0	1	0	0
....................................................................TTGTGTGTGTTTTTG.......................................................................................................................................................................	15	0	16	0.06	1	0	0	1	0	0

Species	Coordinate	ID	Alignment
droSim2	3l:9524367-9524616 +	dsi_16290	TG-GT--------------------------------------------TTTTATTGCGCTC-------GGT----ACTTATA---------------------------TT---TTCG--------------------TTCAATTGGCCTCCTTA---GCAGTG--ACAAAAAATAAAAACACACACAAAA---ACCAG---------CAACACTCGAA-----GTTGTTTATTAATGAAATTGCGTTCCATCC----------A--C---------------------GCCATACTCGTCTCTGTTT----C-----GAATTT------------TCTTTATTTC----TC------------------------------ATTTTATTTAT----T-AAT--------T-TT--T------------T-TTT-TTAC------------TT----TCAGGGCGTT---GAAT-TCGCTGCCCCGAATGCCGAGATTCTT---GGAGCATC------CACAGT
droSec2	scaffold_0:1997844-1998103 +		TG-GT--------------------------------------------TTTTATTGCGCTC-------AGT----ACTTATA---------------------------TT---TTCG--------------------TTCAATTGGCCTCCTTA---GCAGTG--ACAAAAAATAAAA-CACACACAAAA---ACCAG---------CAACACTCGAA-----GTTGTTTATTAATGAAATTGCGTTCCATTC----------C--C---------------------GTCAT--CCTCGTCTGTTT----C-----GAATTT------------TCTTTATTTC----TC------------------------------ATTTTATTTAT----T-AAT--------T-TTTTGC-TTTTTTTTG-T-GTCTTTAC------------TT----TCAGGGCGTT---GAAT-TCGCTGCCCCGAATGCCGAGATTCTT---GGAGCATC------CACAGT
dm3	chr3L:9764550-9764804 +		TG-GT--------------------------------------------TTTTATTGCGCTC-------GGT----ACTTATA---------------------------TT---TTCG--------------------TTCAATTGGCCTCCTTA---GCAGTG--ACAAAAAA-AAA---ATACACAAAA---ACCAG---------CAACAGTCAAA-----GTTGTTTATTAATGAAATTGCGTTCCATCC----------A--C---------------------GCCATCATCGCCTCTGTTTGCTTC-----GAATTT------------TCTTTTTTTT----T-----------------------------TCATTTCATTTAT----T-AAT--------T-TTTTGT-TT----------TTT-CTAC------------TT----TCAGGGCGTT---GAAT-TCGCTGCCCCGAATGCCGAGATTCTT---GCAGCATC------CACAGT
droEre2	scaffold_4784:9752341-9752577 +		TG-GT--------------------------------------------TTTTATTGCGCTC-------GGT----ACTTATA---------------------------TT---TTTG--------------------TTCAATTGGCCTCCTTA---GCAGTG--ACAAAAAACACA-----------AT---ACCAG---------CAACAGACGAA-----GTTGTTTATTAATGAAATTGCGTTCCATCC----------A--C----------------------------TCGCCTCTGTTCG-CTC-----GACTTT------------TCTTCTTTCC----T-----------------------------TCA-TTTATTTAT----T-AAA--------T-TTTTA------------T-TAT-TCAC------------TT----TCAGGGCGCT---GAAT-TCGCTGCCCCGAATGCCGAGATTCTT---GCAGCATC------CACAGT
droYak3	3L:9737377-9737641 +		TG-GT--------------------------------------------TTTTATTGCGCTC-------GGT----ACTTATA---------------------------TT---TTT------------------C-GTTCAATTGGCCTCCTTA---GCAGTG--ACAAAAAATA------CACAAAAAT---ACCAG---------CAACAGACGAA-----GTTGTTTATTAATGAAACTGCGTTCCATCC----------A--C----------------------------TCGCCTCTGTTTG-TTC-----AAATTT------------TCGTCTTTTC----TC--TTT----TTTATATATGTT---TTCTTCA-TTTATTTAT----T-AAT--------TTTTTTGT-----------T-TTT-TCAC------------TT----TCAGGGCGTT---GAAT-TCGCTGCCCCGAATGCCGAGATTCTT---GGAGCATC------CACAGT
droEug1	scf7180000409711:1621160-1621402 +		TG-GT--------------------------------------------TTTTATGGCGCTC-------GGT----ACTCAT--------------------ATA-TATATT---TCTGT-----G-CG-GCATCGC-CATCAATTGCCCTCCTTA---GCAGTC--ACAAAAAA----------------------AAG--------ACAACAGTCGAA-----ATTGT-TATTAATGAAATTGCGTTCTCA------------A--C----------------------------TTGCTTCTGTTT----------------TTG----TATT-----C---AT-T---------TTTTTCTATA----TA---------------TCTT-----T-AAT--------T-TTTTG--------TTGTGTTTT-TT-A------------TT----TTAGGGCGTT---GAAT-TCGCTGCCCCGAATGCCGAGATTCTT---GGAGCATC------CACAGT
droBia1	scf7180000302428:8009793-8010051 -		TG-GT--------------------------------------------TTTTATTGCGCTC-------GGT----ACTTACAGATACAGATACTCGT----GGA-TATATT---TATGT-----G-CG-GCATCGC-CTCCAATTGGCCTCCTTA--GGCAGTG--ACAAAAA------------------------AG---------CAACAGTCCAA-----ATTGTTTATTAATGAAATTGCGCTCCAAGC----------A--C----------------------------CCGCTTCTGTTTG-TTT-----GTCTCT------------TT-------------------TTTTTC------TGTA---------------TCTCT----A-AATAT------TTTTTTG------------T-TTC-TTAC------------TT----TCAGGGCGTT---GAAT-TCGCTGCCCCGAATGTTGAGATTCTT---GGAGCATC------CACAGT
droTak1	scf7180000415741:8711-8945 -		TG-GT--------------------------------------------TTTTATTGCGCTC-------GAT----ACTTAT-------------------------ATATT---TTTGT-----G-CG-GCATCGC-CTTCAATTGGCCTCCTTG--GGCAGTG--ACAAAAAA-----------------------AG---------CAACAGTCGAA-----ATTGTTTATTAATGAAATTGCGTTCCAAGA----------A--C----------------------------CCGCTTCTGTTTG-TTC-----GACTGT------------T--------------------TTTTTC------TGTA---------------TCTCT----T-AAT----------TTTTG------------T-TTC-TCAA------------TT----TCAGGGCGTT---GAAT-TCGCTGCCCCGAATGCCGAGATTCTT---GGAGCATC------CACAGT
droEle1	scf7180000490564:554159-554406 +		TG-GT--------------------------------------------TTTTATTGCGCTC-------GGT----ACTTATA---------------------------TT---TTTGT-----G-CG-GCATCGC-CTTCAATTGGCCTCCTTA---GCAGTG--ACAAAAAACAAA-----------AA---AACAG---------CAACAGTCAAA-----ATGGTTTATTAATGAATTTGCGTTCGAAGC----------A--C----------------------------CCGCTTCTGTTTG-TTCGCGTT------CTGTTTC--------------------------GTTTTA------TGTA---------------TCTCT----T-A-TA-------TTTTATG------------T-TTT-TAAA------------TT----TCAGGGCGCT---GAAT-TCGCTGCCTCGAATGCCGAGATTTTC---GGAGCATC------AACAGT
droRho1	scf7180000778255:81374-81620 +		TG-GT--------------------------------------------TTTTATTGCGCTC-------GGT----ACTTAT-------------------------ATATT---TTTGT-----G-TG-GCATCGC-CTTCAATTGTGCTCCTTA---GCAGTG--ACAAAAAA-ACA-----------AC---AGCAG---------CAACAGTCGAA-----TTTGTTTATTAATGAAATTGCGTTCAAAGC----------A--C----------------------------CCGCGTCAGTTTG-TTCGACTG------CTGCTTC--------------------------GTTTTC------TGTA---------------TCTAT----T-A-T--------T-TTTTG------------T-TTT-TAAA------------TT----TCAGGGCGTT---GAAT-TCGCTGCCCCGAATGCCGAGATTCTT---GGAGCATC------CACAGT
droFic1	scf7180000453807:914549-914781 +		TG-GT--------------------------------------------TTTTATTGCGCTC-------GGT----ACTTATA---------------------------TTTTTTTTGT-----G-CG-GCATCGC-CTTCAATTGGCCTCCTTA---GCAGTG--ACAAAAA---------------------AGCAG---------CAACAGTCGAA-----ATTGTTTATTAATGAAATTGCGTTGCAAGC----------A--C----------------------------CCGCTTCTGTTT----------------CTGTTTC--------------------------AATTTC------TGTA---------------TCTCT----T-T-T--------T-TTTTG------------G-TTT-TTAA------------TT----TCAGGGCGTT---GAAT-TCGCTGCCCCGAATGCCGAGATTCTT---GGAGCATC------CACAGT
droKik1	scf7180000302486:2343127-2343400 +		TG-GT--------------------------------------------TTTTATTGCGCTC-------GGT----ACTTACA------------CTT----CTA-TATATT---ATTGT-----G-CG-GCATCGC-TTTCAATTGGCCTCCTTA--AGCAGAGAGACAAAAAACAAAA---CGAAAAAAAACCAGCAG---------CAACAGTCGAA-----ATTGTTTATTAATGAAATTGCGTTCCAAGC----------A--C----------------------------CCGCTTGTGTTT----------------TTG----TTTT---------TC----TCAGTTT----TCTATATCTGTA---------------TCCGT----T-T-T--------TTTTCTG------------T-TTCTTAAA------------TT----GCAGGGCGTT---GAAT-TCGCTGCCCCGAATGCCGAGATTCTT---GGAGCATC------CACAGT
droAna3	scaffold_13337:3615689-3615938 -		CC-GT--------------------------------------------TTTTATTGCGTCCCTCTGGTAGT----ATT-ATG------------TCTCTATGGA-TATATT---TTTGT-----G-CG-GCATCGC-TTTCAATTGGCCTCCTTA---GCAGTG--ACA--------------------------GCAG---------CAACAGTCGAA-----ATTGTTTATTAATGAAATTGCGTTCCAAGT----------G--C----------------------------TCGCTTCTCCTT----------------TT----------TT-----------------------TTTAT----------------ATTTTGTTTGT----TTAAT--------T-TTTTGT-TTTT------T-TTT-TGGG------------TT----ACAGGGCGTT---GAAT-TCGCTGCCCCGAATGCCGAGATTCTT---GGAGCACC------CACAGT
droBip1	scf7180000395954:15680-15903 -		CC-GT--------------------------------------------TTTTATGGCGTCCCTCT---GGT----GTAT------------------------ACTATATT---TTTGT-----G-CG-GCATCGC-TTTCAATTGGCCTCCTTA---CCAGTG--ACA-------------------------ACCAG---------CAACAGTCGAA-----ATTGTTTATTAATGAAATTGCGTTCCAAGTTATGTTTATTGA------------------------------------------------------------G----T------------AC----TC-----------------AGTATTTTT--T-TT--------C----T-AAT--------TTTTT---------------------TGG------------TT----ACAGGGCGTT---GAATTTTGCTGCCCCGAATGCCGAGATTCTT---GGAGCACA------CACAGT
dp5	XR_group6:9895821-9896121 -		TC-GGGAATACTGTGTATCTGTTTGTTTTTTGTTTTTGTTTCTTTTTGTTTTTATTGCCACC-------GCC----AGCAGT--------------------AGATGATAAT---TCTTTCAAAAGAGG-GAATCGC-TTTCAATTGGCCGCCTCCGTGCCACTG--AC--------------------------AGCAG---------CCACAGTCGAA-----ATTGTTTATTAATGAAAAAGCGTTCCATGT----------T--T----------------------------CAGCTTCTGTTG----------------CTG----TTTTT---------GTTGC-------TGTTGC------TGTA---------------ACTGTATTT-----ATGTTGTT-CTCTTG------------T-CTT-GTTT------------TT----TCAGGCCGTTATCCA---ACGTTGCACCGAATGCCGAGACTCCT---GGAGCATC------CACAGT
droPer2	scaffold_61:175608-175907 -		TC-GGGAATACTGTGTATCTGTTTGTTTTTTGTTTTTGTTTCTTTTTGTTTTTATTGCCACC-------GCC----AGCAGT--------------------AGATGATAAT---TCTTTCAAAAGAGG-GAATCGC-TTTCAATTGGCCGCCTCCGTGCCACTG--AC--------------------------AGCAG---------CCACAGTCGAA-----ATTGTTTATTAATGAAAAAGCGTTCCATGT----------T--T----------------------------CAGCTTGTATTC-----------------AG----CTTCT---------GTTGC-------TGTTGC------TGTA---------------ACTGTATTT-----ATGTTGTT-CTCTTG------------T-CTT-GTTT------------TT----TCAGGCCGTTATCCA---ACGTTGCACCGAATGCCGAGACTCCT---GGAGCATC------CACAGT
droWil2	scf2_1100000004762:1150656-1150837 -		TA-GT--------------------------------------------TTTTATTGACTTC--------TT----GC-------------------------------------------------TG-TCTTTGTCTACCAATTGGTCTCCTTG---GAGGGG------------------------------------------------------------GCCGTTTATTAATGAAATTGCGTTCTAAGT----------G--T----------------------------CTGACTGTTTT------------------------------CTTTGTTTT----T-----------------------------T-TT--------T----C-AAT--------TTGTTTAGTTT----TG--G-T----------------------------AGCCATC---GCAG-CGGTTGCACCGAATGCCGAGATTCTT---GGAGCACC------CACAGT
droVir3	scaffold_13049:8696159-8696372 -		CA-AT--------------------------------------------T-TTATTGCTC---------GACTTCTGTT-GTG------------T--------G-TGTGTG---TGTGT-----G-CGTGTGTGTG-TCTCAATTGGCCCAC--------AGTT--TA--------------------------AGCAG---------GCAGAGTCATAACTTTATTCTTTATTAATGTAATTGCGTTCTAAGT----------G--TATCCTC--------TGTCCACACTTG--CAGCCCCTGCG------------------------------------------------------------------------------------------------------------------------------------------GTCGGTCT----ACAG-TCG-----GAAGCCTTTCGCACCGAATGCCGAGATTCTT---GGAGCTGC------CGCAGT
droMoj3	scaffold_6680:6651191-6651412 +		CGCAA--------------------------------------------GTTTATTGCTGTT-------GAT----ATT-GTG------------T--------T-TGTCTC---TGAGT-----G-TTTGTGTTGG-CTTCAATTGAATT--------GCA----------------------------------GCCGTGCGAGTGGCAACTTT---------CTCGTTTCTTAATTTAATTGCGTACTAAGT----------G--CATTCTCTTCCACTCTCTTCACACT---------------------------------------------------------------------------------------------------------------------------TG------------C-AGC-CCAGCCCACGC-----CCACCGTCGCACCGTC----ACA-CCGTCACACCGAATGCCGAGATTCTTCTCCGAGCTGC------CGCAGT
droGri2	scaffold_15110:4435546-4435745 -		CA-AT--------------------------------------------T-TTATTGCTC---------GAATT--ATGTATT---------------------------TG---TGTGT-----G-TG-TTTTTGTTTCTCAATTGTGA----------------------------------------------GCTC---------------TCATAACTTTATTGTTTATTAATGAAATAGCGTTCTAATT----------GAGCAT----------------------------TCTTCTTCTT------------------------------------------------------C----------------------------------T-A-C--------T-CTCAG--------CAGCGCCTC-CT--------CTCCCT--------GCCCCG-----GCACCTTTGACCACCGAATGCCGAGATATTT---GGAGCGTAAATTCAAACAGA

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

TG-GT--------------------------------------------TTTTATTGCGCTC-------GGT----ACTTATA---------------------------TT---TTCG--------------------TTCAATTGGCCTCCTTA---GCAGTG--ACAAAAAATAAAAACACACACAAAA---ACCAG---------CAACACTCGAA-----GTTGTTTATTAATGAAATTGCGTTCCATCC----------A--C---------------------GCCATACTCGTCTCTGTTT----C-----GAATTT------------TCTTTATTTC----TC------------------------------ATTTTATTTAT----T-AAT--------T-TT--T------------T-TTT-TTAC------------TT----TCAGGGCGTT---GAAT-TCGCTGCCCCGAATGCCGAGATTCTT---GGAGCATC------CACAGT	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGGCGTT---GAAT-TCGCTGCCCCGAAT...................................	26	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGGCGTT---GAAT-TCGCTGCCCCGAA....................................	25	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

TG-GT--------------------------------------------TTTTATTGCGCTC-------AGT----ACTTATA---------------------------TT---TTCG--------------------TTCAATTGGCCTCCTTA---GCAGTG--ACAAAAAATAAAA-CACACACAAAA---ACCAG---------CAACACTCGAA-----GTTGTTTATTAATGAAATTGCGTTCCATTC----------C--C---------------------GTCAT--CCTCGTCTGTTT----C-----GAATTT------------TCTTTATTTC----TC------------------------------ATTTTATTTAT----T-AAT--------T-TTTTGC-TTTTTTTTG-T-GTCTTTAC------------TT----TCAGGGCGTT---GAAT-TCGCTGCCCCGAATGCCGAGATTCTT---GGAGCATC------CACAGT	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAATGCCGAGATTCTT---GGAGC...............	22	1	2.00	2	0	0	2	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGAGATTCTT---GGAGCAT.............	19	1	1.00	1	0	0	1	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGATTCTT---GGAGCATC------CACAGT	24	1	1.00	1	0	1	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGCCGAGATTCTT---GGAGC...............	20	1	1.00	1	0	0	1	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATTCTT---GGAGCATC------CACAGT	22	1	1.00	1	0	0	0	1
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCCGAATGCCGAGATTCTT---GGAGC...............	26	1	1.00	1	0	0	1	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGATTCTT---GGAGCATC------CACAGT	23	1	1.00	1	0	0	1	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGAGATTCTT---GGAGCATC------CACA..	24	1	1.00	1	0	0	1	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT---GAAT-TCGCTGCCCCGAAT...................................	20	1	1.00	1	0	0	1	0

dm3

TG-GT--------------------------------------------TTTTATTGCGCTC-------GGT----ACTTATA---------------------------TT---TTCG--------------------TTCAATTGGCCTCCTTA---GCAGTG--ACAAAAAA-AAA---ATACACAAAA---ACCAG---------CAACAGTCAAA-----GTTGTTTATTAATGAAATTGCGTTCCATCC----------A--C---------------------GCCATCATCGCCTCTGTTTGCTTC-----GAATTT------------TCTTTTTTTT----T-----------------------------TCATTTCATTTAT----T-AAT--------T-TTTTGT-TT----------TTT-CTAC------------TT----TCAGGGCGTT---GAAT-TCGCTGCCCCGAATGCCGAGATTCTT---GCAGCATC------CACAGT	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
..................................................................................................................................................................................................................................................................................................................................................................................................................................................T-CTAC------------TT----TCAGGGCGTT---GAAT-.................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTT---GAAT-TCGCTGCCCCGAATGCCGA..............................	26	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTT---GAAT-TCGCTGCCCCG......................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGCCGAGATTCTT---GCAGCA..............	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGCCGAGATTCTT---GCAGC...............	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................T-----------------------------TCATTTCATTTAT----T-AAT--------T-TTTTGT-.........................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................AAAAAA-AAA---ATACACAAAA---AC........................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AT-TCGCTGCCCCGAATGCC................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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..................................................................................................................................................................................................................................................................................................................................................................................................................................................T-CTAC------------TT----TCAGGGCGTT---GAAT-TC...............................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCCCGAATGCCGAGATTCTT---GC..................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCGAGATTCTT---GCAGCATC------CA....	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................T---TTCG--------------------TTCAATTGGCCTC.....................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................ATTGCGTTCCATCC----------A--C---------------------GC.........................................................................................................................................................................................................................................	18	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................CAAAAAA-AAA---ATACACAAAT---..........................................................................................................................................................................................................................................................................................................................................	20	15	0.07	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

TG-GT--------------------------------------------TTTTATTGCGCTC-------GGT----ACTTATA---------------------------TT---TTTG--------------------TTCAATTGGCCTCCTTA---GCAGTG--ACAAAAAACACA-----------AT---ACCAG---------CAACAGACGAA-----GTTGTTTATTAATGAAATTGCGTTCCATCC----------A--C----------------------------TCGCCTCTGTTCG-CTC-----GACTTT------------TCTTCTTTCC----T-----------------------------TCA-TTTATTTAT----T-AAA--------T-TTTTA------------T-TAT-TCAC------------TT----TCAGGGCGCT---GAAT-TCGCTGCCCCGAATGCCGAGATTCTT---GCAGCATC------CACAGT	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGAGATTCTT---GCAGCAT.............	19	1	2.00	2	0	0	0	0	0	2	0
.................................................................................................................................................................................................................................................................................................................GTTCG-CTC-----GACTTT------------TCTTCTTTCC----T-----------------------------T...............................................................................................................................................	26	1	1.00	1	0	0	0	0	0	1	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAT-TCGCTGCCCCGAATGCCGAGATT..........................	27	1	1.00	1	0	0	0	0	0	0	1
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGCTGCCCCGAATGCCGA..............................	19	1	1.00	1	0	0	0	0	0	1	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAT-TCGCTGCCCCGAATGCCGA..............................	22	1	1.00	1	0	0	0	0	0	1	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGAGATTCTT---GCAGCATC------......	20	1	1.00	1	0	0	0	0	1	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCCGAATGCCGAGATTCTT---GCAGC...............	25	1	1.00	1	1	0	0	0	0	0	0

droYak3

TG-GT--------------------------------------------TTTTATTGCGCTC-------GGT----ACTTATA---------------------------TT---TTT------------------C-GTTCAATTGGCCTCCTTA---GCAGTG--ACAAAAAATA------CACAAAAAT---ACCAG---------CAACAGACGAA-----GTTGTTTATTAATGAAACTGCGTTCCATCC----------A--C----------------------------TCGCCTCTGTTTG-TTC-----AAATTT------------TCGTCTTTTC----TC--TTT----TTTATATATGTT---TTCTTCA-TTTATTTAT----T-AAT--------TTTTTTGT-----------T-TTT-TCAC------------TT----TCAGGGCGTT---GAAT-TCGCTGCCCCGAATGCCGAGATTCTT---GGAGCATC------CACAGT	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCTT---GGAGCATC------CACAGT	21	1	4.00	4	0	2	1	0	0	0	1	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCCGAATGCCGAGATTCTT---GGAGC...............	26	1	3.00	3	0	2	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCCGAGATTCTT---GGAGC...............	19	1	3.00	3	0	2	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTT---GAAT-TCGCTGCCCCG......................................	18	1	3.00	3	0	0	3	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGAGATTCTT---GGAGCATC------CACAGT	26	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCGAATGCCGAGATTCTT---GGAGC...............	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGATTCTT---GGAGCATC------CACAGT	23	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T---GAAT-TCGCTGCCCCGAAT...................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTT---GAAT-TCGCTGCCCCGAAT...................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAATGCCGAGATTCTT---GGAGC...............	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAT-TCGCTGCCCCGAATGCCGA..............................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGAGATTCTT---GGAGCATC------CACA..	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGGCGTT---GAAT-TCGCTGCCCCGAATGC.................................	29	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGAGATTCTT---GGAGCAT.............	19	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0

droEug1

TG-GT--------------------------------------------TTTTATGGCGCTC-------GGT----ACTCAT--------------------ATA-TATATT---TCTGT-----G-CG-GCATCGC-CATCAATTGCCCTCCTTA---GCAGTC--ACAAAAAA----------------------AAG--------ACAACAGTCGAA-----ATTGT-TATTAATGAAATTGCGTTCTCA------------A--C----------------------------TTGCTTCTGTTT----------------TTG----TATT-----C---AT-T---------TTTTTCTATA----TA---------------TCTT-----T-AAT--------T-TTTTG--------TTGTGTTTT-TT-A------------TT----TTAGGGCGTT---GAAT-TCGCTGCCCCGAATGCCGAGATTCTT---GGAGCATC------CACAGT	Size	Hit Count	Total Norm	Total
No Reads

droBia1

TG-GT--------------------------------------------TTTTATTGCGCTC-------GGT----ACTTACAGATACAGATACTCGT----GGA-TATATT---TATGT-----G-CG-GCATCGC-CTCCAATTGGCCTCCTTA--GGCAGTG--ACAAAAA------------------------AG---------CAACAGTCCAA-----ATTGTTTATTAATGAAATTGCGCTCCAAGC----------A--C----------------------------CCGCTTCTGTTTG-TTT-----GTCTCT------------TT-------------------TTTTTC------TGTA---------------TCTCT----A-AATAT------TTTTTTG------------T-TTC-TTAC------------TT----TCAGGGCGTT---GAAT-TCGCTGCCCCGAATGTTGAGATTCTT---GGAGCATC------CACAGT	Size	Hit Count	Total Norm	Total
No Reads

droTak1

TG-GT--------------------------------------------TTTTATTGCGCTC-------GAT----ACTTAT-------------------------ATATT---TTTGT-----G-CG-GCATCGC-CTTCAATTGGCCTCCTTG--GGCAGTG--ACAAAAAA-----------------------AG---------CAACAGTCGAA-----ATTGTTTATTAATGAAATTGCGTTCCAAGA----------A--C----------------------------CCGCTTCTGTTTG-TTC-----GACTGT------------T--------------------TTTTTC------TGTA---------------TCTCT----T-AAT----------TTTTG------------T-TTC-TCAA------------TT----TCAGGGCGTT---GAAT-TCGCTGCCCCGAATGCCGAGATTCTT---GGAGCATC------CACAGT	Size	Hit Count	Total Norm	Total
No Reads

droEle1

TG-GT--------------------------------------------TTTTATTGCGCTC-------GGT----ACTTATA---------------------------TT---TTTGT-----G-CG-GCATCGC-CTTCAATTGGCCTCCTTA---GCAGTG--ACAAAAAACAAA-----------AA---AACAG---------CAACAGTCAAA-----ATGGTTTATTAATGAATTTGCGTTCGAAGC----------A--C----------------------------CCGCTTCTGTTTG-TTCGCGTT------CTGTTTC--------------------------GTTTTA------TGTA---------------TCTCT----T-A-TA-------TTTTATG------------T-TTT-TAAA------------TT----TCAGGGCGCT---GAAT-TCGCTGCCTCGAATGCCGAGATTTTC---GGAGCATC------AACAGT	Size	Hit Count	Total Norm	Total
No Reads

droRho1

TG-GT--------------------------------------------TTTTATTGCGCTC-------GGT----ACTTAT-------------------------ATATT---TTTGT-----G-TG-GCATCGC-CTTCAATTGTGCTCCTTA---GCAGTG--ACAAAAAA-ACA-----------AC---AGCAG---------CAACAGTCGAA-----TTTGTTTATTAATGAAATTGCGTTCAAAGC----------A--C----------------------------CCGCGTCAGTTTG-TTCGACTG------CTGCTTC--------------------------GTTTTC------TGTA---------------TCTAT----T-A-T--------T-TTTTG------------T-TTT-TAAA------------TT----TCAGGGCGTT---GAAT-TCGCTGCCCCGAATGCCGAGATTCTT---GGAGCATC------CACAGT	Size	Hit Count	Total Norm	Total
No Reads

droFic1

TG-GT--------------------------------------------TTTTATTGCGCTC-------GGT----ACTTATA---------------------------TTTTTTTTGT-----G-CG-GCATCGC-CTTCAATTGGCCTCCTTA---GCAGTG--ACAAAAA---------------------AGCAG---------CAACAGTCGAA-----ATTGTTTATTAATGAAATTGCGTTGCAAGC----------A--C----------------------------CCGCTTCTGTTT----------------CTGTTTC--------------------------AATTTC------TGTA---------------TCTCT----T-T-T--------T-TTTTG------------G-TTT-TTAA------------TT----TCAGGGCGTT---GAAT-TCGCTGCCCCGAATGCCGAGATTCTT---GGAGCATC------CACAGT	Size	Hit Count	Total Norm	Total
No Reads

droKik1

TG-GT--------------------------------------------TTTTATTGCGCTC-------GGT----ACTTACA------------CTT----CTA-TATATT---ATTGT-----G-CG-GCATCGC-TTTCAATTGGCCTCCTTA--AGCAGAGAGACAAAAAACAAAA---CGAAAAAAAACCAGCAG---------CAACAGTCGAA-----ATTGTTTATTAATGAAATTGCGTTCCAAGC----------A--C----------------------------CCGCTTGTGTTT----------------TTG----TTTT---------TC----TCAGTTT----TCTATATCTGTA---------------TCCGT----T-T-T--------TTTTCTG------------T-TTCTTAAA------------TT----GCAGGGCGTT---GAAT-TCGCTGCCCCGAATGCCGAGATTCTT---GGAGCATC------CACAGT	Size	Hit Count	Total Norm	Total
No Reads

droAna3

CC-GT--------------------------------------------TTTTATTGCGTCCCTCTGGTAGT----ATT-ATG------------TCTCTATGGA-TATATT---TTTGT-----G-CG-GCATCGC-TTTCAATTGGCCTCCTTA---GCAGTG--ACA--------------------------GCAG---------CAACAGTCGAA-----ATTGTTTATTAATGAAATTGCGTTCCAAGT----------G--C----------------------------TCGCTTCTCCTT----------------TT----------TT-----------------------TTTAT----------------ATTTTGTTTGT----TTAAT--------T-TTTTGT-TTTT------T-TTT-TGGG------------TT----ACAGGGCGTT---GAAT-TCGCTGCCCCGAATGCCGAGATTCTT---GGAGCACC------CACAGT	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAT-TCGCTGCCCCGAATGCC................................	20	1	1.00	1	0	1	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-TCGCTGCCCCGAATGCCGA..............................	20	1	1.00	1	0	1	0	0	0	0

droBip1

CC-GT--------------------------------------------TTTTATGGCGTCCCTCT---GGT----GTAT------------------------ACTATATT---TTTGT-----G-CG-GCATCGC-TTTCAATTGGCCTCCTTA---CCAGTG--ACA-------------------------ACCAG---------CAACAGTCGAA-----ATTGTTTATTAATGAAATTGCGTTCCAAGTTATGTTTATTGA------------------------------------------------------------G----T------------AC----TC-----------------AGTATTTTT--T-TT--------C----T-AAT--------TTTTT---------------------TGG------------TT----ACAGGGCGTT---GAATTTTGCTGCCCCGAATGCCGAGATTCTT---GGAGCACA------CACAGT	Size	Hit Count	Total Norm	Total
No Reads

dp5

TC-GGGAATACTGTGTATCTGTTTGTTTTTTGTTTTTGTTTCTTTTTGTTTTTATTGCCACC-------GCC----AGCAGT--------------------AGATGATAAT---TCTTTCAAAAGAGG-GAATCGC-TTTCAATTGGCCGCCTCCGTGCCACTG--AC--------------------------AGCAG---------CCACAGTCGAA-----ATTGTTTATTAATGAAAAAGCGTTCCATGT----------T--T----------------------------CAGCTTCTGTTG----------------CTG----TTTTT---------GTTGC-------TGTTGC------TGTA---------------ACTGTATTT-----ATGTTGTT-CTCTTG------------T-CTT-GTTT------------TT----TCAGGCCGTTATCCA---ACGTTGCACCGAATGCCGAGACTCCT---GGAGCATC------CACAGT	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCACCGAATGCCGAGACTCCT---G...................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGCCGAGACTCCT---GGAGC...............	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCGAATGCCGAGACTCCT---GGAGC...............	25	1	1.00	1	0	0	0	0	1	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGCCGAGACTCCT---GGAGC...............	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAATGCCGAGACTCCT---GGAG................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCACCGAATGCCGAGACTCCT---GGA.................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCCGAGACTCCT---GGAGC...............	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCCA---ACGTTGCACCGAATGCCGA..............................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGACTCCT---GGAGCATC------CACA..	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................AGCAG---------CCACAGTCGAA-----ATTGTTT.....................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	1	0	0	0	0	0
........................GTTTTTTGTTTTTGTTTCTTTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	6	0.17	1	0	1	0	0	0	0	0	0	0	0

droPer2

TC-GGGAATACTGTGTATCTGTTTGTTTTTTGTTTTTGTTTCTTTTTGTTTTTATTGCCACC-------GCC----AGCAGT--------------------AGATGATAAT---TCTTTCAAAAGAGG-GAATCGC-TTTCAATTGGCCGCCTCCGTGCCACTG--AC--------------------------AGCAG---------CCACAGTCGAA-----ATTGTTTATTAATGAAAAAGCGTTCCATGT----------T--T----------------------------CAGCTTGTATTC-----------------AG----CTTCT---------GTTGC-------TGTTGC------TGTA---------------ACTGTATTT-----ATGTTGTT-CTCTTG------------T-CTT-GTTT------------TT----TCAGGCCGTTATCCA---ACGTTGCACCGAATGCCGAGACTCCT---GGAGCATC------CACAGT	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGACTCCT---GGAGCATC------CAC...	21	1	1.00	1	0	1	0	0	0	0
.....................................................................................................................................................CGCCTCCGTGCCACTG--AC--------------------------..........................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGCCGAGACTCCT---GGAGC...............	21	1	1.00	1	0	0	1	0	0	0

droWil2

TA-GT--------------------------------------------TTTTATTGACTTC--------TT----GC-------------------------------------------------TG-TCTTTGTCTACCAATTGGTCTCCTTG---GAGGGG------------------------------------------------------------GCCGTTTATTAATGAAATTGCGTTCTAAGT----------G--T----------------------------CTGACTGTTTT------------------------------CTTTGTTTT----T-----------------------------T-TT--------T----C-AAT--------TTGTTTAGTTT----TG--G-T----------------------------AGCCATC---GCAG-CGGTTGCACCGAATGCCGAGATTCTT---GGAGCACC------CACAGT	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
...........................................................................................................................................................................................................................................................................................................................................................................................................................................G--G-T----------------------------AGCCATC---GCAG-CGGTTGCACC.......................................	24	1	1.00	1	0	1	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCTT---GGAGCACC------CACAGT	21	1	1.00	1	0	0	0	1	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACCGAATGCCGAGATTCTT---GGAG................	25	1	1.00	1	0	0	0	1	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGAATGCCGAGATTCTT---GGAGC...............	23	1	1.00	1	0	0	0	1	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTGCACCGAATGCCGA..............................	18	1	1.00	1	0	1	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................T----TG--G-T----------------------------AGCCATC---GCAG-CGGTT............................................	21	1	1.00	1	0	1	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATC---GCAG-CGGTTGCACCGA.....................................	19	1	1.00	1	0	0	0	1	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................TG--G-T----------------------------AGCCATC---GCAG-CGGTT............................................	20	1	1.00	1	0	1	0	0	0

droVir3

CA-AT--------------------------------------------T-TTATTGCTC---------GACTTCTGTT-GTG------------T--------G-TGTGTG---TGTGT-----G-CGTGTGTGTG-TCTCAATTGGCCCAC--------AGTT--TA--------------------------AGCAG---------GCAGAGTCATAACTTTATTCTTTATTAATGTAATTGCGTTCTAAGT----------G--TATCCTC--------TGTCCACACTTG--CAGCCCCTGCG------------------------------------------------------------------------------------------------------------------------------------------GTCGGTCT----ACAG-TCG-----GAAGCCTTTCGCACCGAATGCCGAGATTCTT---GGAGCTGC------CGCAGT	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTT---GGAGCTGC------CGCAGT	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCACCGAATGCCGAGATTCTT---....................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................TGCG------------------------------------------------------------------------------------------------------------------------------------------GTCGGTCT----ACAG-TCG-----GAA...................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCT----ACAG-TCG-----GAAGCCTTT.............................................	21	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCG-----GAAGCCTTTCGCACCGAATGCC................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCTT---GGAGCTGC------CGC...	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAATGCCGAGATTCTT---GGAGCT..............	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCTT---GGAGCTGC------CGCAGT	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCT----ACAG-TCG-----GAAGCCTTTC............................................	22	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCT----ACAG-TCG-----GAAGCC................................................	18	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCT----ACAG-TCG-----GAAGCCT...............................................	19	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-----GAAGCCTTTCGCACCGAATGCCGAG.............................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................CG------------------------------------------------------------------------------------------------------------------------------------------GTCGGTCT----ACAG-TCG-----GAAGCCT...............................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
................................................................................................................................................................................................................................................................................................ACACTTG--CAGCCCCTGCG------------------------------------------------------------------------------------------------------------------------------------------GTCGGT.........................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGATTCTT---GGAGCTGC------CGC...	20	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................TGTG---TGTGT-----G-CGTGTGTGTG-TC.................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
...........................................................................................................GTGTG---TGTGT-----G-CGTGTGTGTG-TC.................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0

droMoj3

CGCAA--------------------------------------------GTTTATTGCTGTT-------GAT----ATT-GTG------------T--------T-TGTCTC---TGAGT-----G-TTTGTGTTGG-CTTCAATTGAATT--------GCA----------------------------------GCCGTGCGAGTGGCAACTTT---------CTCGTTTCTTAATTTAATTGCGTACTAAGT----------G--CATTCTCTTCCACTCTCTTCACACT---------------------------------------------------------------------------------------------------------------------------TG------------C-AGC-CCAGCCCACGC-----CCACCGTCGCACCGTC----ACA-CCGTCACACCGAATGCCGAGATTCTTCTCCGAGCTGC------CGCAGT	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTCTCCGAGCTGC------CGCA..	20	1	1.00	1	0	0	1	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCGAATGCCGAGATTC.........................	18	1	1.00	1	1	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTC----ACA-CCGTCACACCGAATGCCGAG.............................	26	1	1.00	1	1	0	0	0	0	0

droGri2

CA-AT--------------------------------------------T-TTATTGCTC---------GAATT--ATGTATT---------------------------TG---TGTGT-----G-TG-TTTTTGTTTCTCAATTGTGA----------------------------------------------GCTC---------------TCATAACTTTATTGTTTATTAATGAAATAGCGTTCTAATT----------GAGCAT----------------------------TCTTCTTCTT------------------------------------------------------C----------------------------------T-A-C--------T-CTCAG--------CAGCGCCTC-CT--------CTCCCT--------GCCCCG-----GCACCTTTGACCACCGAATGCCGAGATATTT---GGAGCGTAAATTCAAACAGA	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
..................................................................................................................................................................................................................................................................................................................................................................................................................................................C-CT--------CTCCCT--------GCCCCG-----GCACC.................................................	20	1	1.00	1	1	0

dsi_16290

3l:9524417-9524566 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads