ID:

dsi_16275

Coordinate:

3l:15665138-15665287 +

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

-20.9

Flybase annnotation

exon [3l_15665288_15665832_+]; five_prime_UTR [3l_15665288_15665577_+]; intron [3l_15664425_15665287_+]

Repeatable elements

Name	Class	Family	Strand
(CACG)n	Simple_repeat	Simple_repeat	+

mature

star

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## ACAACAACAAATAGCATTGTTTTGCGAGAGAGCGAGTGAGAGAGAGGGAGCGTTCCCGATTGCGACATTGTGTGAGTGAGCGGAGAAGAAAACGCCAAGAAGTTGGCTGATAAAGCAAACGCACACGCACGCACGCACGCACGCGCACACACACGCAAAGAAAATAGAAAAATCGTAAAATAATAATAATCAGCAAGCAGGAGAAGAAGAAGCAGGAGCAGCAGAAGCAGCAGTACAAACAACAAAAGTG ************************************************************......((((((.(((.(((...........(((((....)))))............))).))).))))))....***************************************************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M053 female body	SRR902008 ovaries	SRR553486 Makindu_3 day-old ovaries	SRR618934 dsim w501 ovaries	M023 head	GSM343915 embryo	M025 embryo	SRR553487 NRT_0-2 hours eggs
..............................................................CGACATTGTGTGAGTGAGCGGAG.....................................................................................................................................................................	23	0	1	1.00	1	0	1	0	0	0	0	0	0
.......................................................................................GAAAAGTCCAAGAAGTTGGCT..............................................................................................................................................	21	2	1	1.00	1	1	0	0	0	0	0	0	0
.......................................................................................................................CGCACACGCACGCACGCA.................................................................................................................	18	0	2	0.50	1	0	0	1	0	0	0	0	0
...................................................................................................................................................................................................AGCAGGAGAAGAAGA........................................	15	0	6	0.17	1	0	0	0	1	0	0	0	0
...............................GGGAGTGAGAGAGAGGG..........................................................................................................................................................................................................	17	1	20	0.10	2	0	0	0	2	0	0	0	0
...................................................GTTTCCGATTGGGACAT......................................................................................................................................................................................	17	2	12	0.08	1	0	0	0	1	0	0	0	0
....................................................................................GAAGAAATCGCCAACAAG....................................................................................................................................................	18	2	12	0.08	1	0	0	0	0	1	0	0	0
.........................................................................................AAACCCCGAGAAGGTGGCTG.............................................................................................................................................	20	3	13	0.08	1	0	0	0	0	0	1	0	0
..............................................................................................................................................................................................CAGCAAGCAGGAGAAGGAGC........................................	20	2	17	0.06	1	0	0	0	0	0	0	1	0
.......................................GAGAGACGGCGCGTTC...................................................................................................................................................................................................	16	2	19	0.05	1	0	0	0	0	0	0	0	1

Anti-sense strand reads

TGTTGTTGTTTATCGTAACAAAACGCTCTCTCGCTCACTCTCTCTCCCTCGCAAGGGCTAACGCTGTAACACACTCACTCGCCTCTTCTTTTGCGGTTCTTCAACCGACTATTTCGTTTGCGTGTGCGTGCGTGCGTGCGTGCGCGTGTGTGTGCGTTTCTTTTATCTTTTTAGCATTTTATTATTATTAGTCGTTCGTCCTCTTCTTCTTCGTCCTCGTCGTCTTCGTCGTCATGTTTGTTGTTTTCAC ***************************************************************************************************************......((((((.(((.(((...........(((((....)))))............))).))).))))))....************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR618934 dsim w501 ovaries	SRR553487 NRT_0-2 hours eggs	SRR553486 Makindu_3 day-old ovaries	SRR553488 RT_0-2 hours eggs
...........................................................................................................................................................................................................................TCGTCTTCGTCGTCA................	15	0	11	0.09	1	1	0	0	0
................................................................................................................................................................TTTTATTTTTTCAGCATTCTAT....................................................................	22	3	13	0.08	1	0	1	0	0
..............................TCGCTGACTCTCTCT.............................................................................................................................................................................................................	15	1	20	0.05	1	0	0	1	0
..............................TCGCTGACTCTCTCTC............................................................................................................................................................................................................	16	1	20	0.05	1	0	0	0	1

Generated: 04/23/2015 at 04:39 PM