ID:

dsi_1627

 Coordinate:

3l:16014285-16014434 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

CDS [3l_16014435_16014773_-]; exon [3l_16014435_16014773_-]; intron [3l_16013278_16014434_-]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
TGCCCAACTCGATTCTGAACTTCTTCTTTAAGATCACCTTTGGTCGCAAGGTAATTGGATAGTTTGTGATATTTAACATAGGTCATGATCATGGTCCACGATCTTCACTTTCCCAGAATTTGTATGGTTATGATTAGAATTTCCATTGGAACATTGCATACTTTTGGTCATTATCGTAATTGGTTCTACAGAAGTTGTTTACTATCATTCATACCTAATATTTCCTTAATATCAACACCTTTTGACACAT
**************************************************.....(((((...(((((((...........))))))).....)))))........(((((...((((((..((((((.((((((((((.((((...))))..........)))))))))).))))))...))))))...))))).....************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 SRR553486
Makindu_3 day-old ovaries
 M024
male body		 SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
TGCCCAACTCGATTCTGAAC...................................................................................................................................................................................................................................... 20 0 1 2.00 2 2 0 0 0 0 0 0
.............TCTGAACTTCTTCTTTAAGATC....................................................................................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0
................................ATCACCTTTGGTCGCAAG........................................................................................................................................................................................................ 18 0 1 1.00 1 0 0 1 0 0 0 0
......................CTTCTTTAAGATCACCTTT................................................................................................................................................................................................................. 19 0 1 1.00 1 0 1 0 0 0 0 0
...................................................................................................................................................................TTGGTCTTTAGCGTAATAGG................................................................... 20 3 2 0.50 1 0 0 0 1 0 0 0
...........................................................................................................................................................................................................ATCATTCATACCGAA................................ 15 1 5 0.20 1 0 0 0 0 1 0 0
............................TAAGATGCCCTTTGATCGCA.......................................................................................................................................................................................................... 20 3 8 0.13 1 0 0 0 0 0 1 0
..............................................................................................TCCACGATCTTCAATT............................................................................................................................................ 16 1 10 0.10 1 0 1 0 0 0 0 0
.......................................................................................................................................................................................CTCTACAGAAGTTGTGT.................................................. 17 2 15 0.07 1 0 0 0 1 0 0 0
..........................................................................................................................TATGGTCGTGATTAGAA............................................................................................................... 17 2 17 0.06 1 0 1 0 0 0 0 0
.......................................................................................................................................................................TCATTCACGTAATTGGT.................................................................. 17 2 19 0.05 1 0 0 0 0 0 0 1
..............................................................................TAGGTCATCATCAGGG............................................................................................................................................................ 16 2 20 0.05 1 0 0 0 0 0 1 0
..............................................................................................TCCACGATCTTCAAT............................................................................................................................................. 15 1 20 0.05 1 0 0 0 0 1 0 0

Anti-sense strand reads

ACGGGTTGAGCTAAGACTTGAAGAAGAAATTCTAGTGGAAACCAGCGTTCCATTAACCTATCAAACACTATAAATTGTATCCAGTACTAGTACCAGGTGCTAGAAGTGAAAGGGTCTTAAACATACCAATACTAATCTTAAAGGTAACCTTGTAACGTATGAAAACCAGTAATAGCATTAACCAAGATGTCTTCAACAAATGATAGTAAGTATGGATTATAAAGGAATTATAGTTGTGGAAAACTGTGTA
**************************************************.....(((((...(((((((...........))))))).....)))))........(((((...((((((..((((((.((((((((((.((((...))))..........)))))))))).))))))...))))))...))))).....************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 M023
head
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 M024
male body
............................................................................................................................................................................TAGCATTAACCAAGATGTCT.......................................................... 20 0 1 1.00 1 0 1 0 0 0 0
........................................................................................ATTACCAGGTGCTAGTAGAGAA............................................................................................................................................ 22 3 1 1.00 1 1 0 0 0 0 0
...........................................................................................ACCAGGTGCTAGTAGAGAAA........................................................................................................................................... 20 2 2 0.50 1 1 0 0 0 0 0
..........................................................................................TATCAGGTGCTAGTAGAGAA............................................................................................................................................ 20 3 9 0.33 3 3 0 0 0 0 0
AGAGGTTGAGCTAGGACTTGAA.................................................................................................................................................................................................................................... 22 3 3 0.33 1 0 0 0 1 0 0
................................................................................................................................................................................................................AGTGTGGATGATAAAGGAAT...................... 20 2 3 0.33 1 0 0 0 1 0 0
..................................................................................................................................................................................................................TGAGGATTATAAAGGAAT...................... 18 2 4 0.25 1 0 0 1 0 0 0
..........................................................................................TAACAGGTGCTAGTAGAGAA............................................................................................................................................ 20 3 10 0.20 2 2 0 0 0 0 0
...............................................................................................................................................................................................................AAGTGTTGATGATAAAGGAAT...................... 21 3 5 0.20 1 0 0 0 0 1 0
....................................................................................................................................................................................................................TGGATAATAAAGGAAT...................... 16 1 6 0.17 1 0 0 1 0 0 0
..................................................................................................................................................................................................................GATGGAATATAAAGGAAT...................... 18 2 10 0.10 1 0 0 1 0 0 0
..................................................................................................................................................................................................................GATGGAGTATAAAGGAATC..................... 19 3 14 0.07 1 0 0 1 0 0 0
........................................................................................................................................................................................................................TGATAAAGGAATCATAGTG............... 19 3 20 0.05 1 0 0 1 0 0 0
........................CGAAATTCTAGTGTATACC............................................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 1
.....................................................................................................................................................................................................................CGATTATAAAGGAAT...................... 15 1 20 0.05 1 0 0 0 0 1 0
...................................................................................................................................................................................................................AGGGATAATAAAGGAAT...................... 17 2 20 0.05 1 0 0 1 0 0 0
......................................................................................................................................................................................................................GATGATAAAGGAATT..................... 15 1 20 0.05 1 0 0 1 0 0 0

Generated: 04/24/2015 at 01:19 AM