ID:

dsi_16252

 Coordinate:

3r:17398577-17398726 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-22.6 -22.6 -22.3 -22.3

Flybase annnotation

exon [3r_17397624_17398534_+]; three_prime_UTR [3r_17398402_17398534_+]; five_prime_UTR [3r_17398727_17398743_+]; CDS [3r_17398744_17398924_+]; exon [3r_17398727_17398924_+]; intron [3r_17397597_17398726_+]

No Repeatable elements found

Sense Strand Reads

########------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
ATGTGATTCCCATTTTGAATGATAATAGATAGATTAATTTGATTCTCTTATCCACCATTTGCGTGGAACTATCGAATTGGCGATTATCGATAAGCACAGCTGGCTGGTTATCGTTTGTTTCGGGGTGAATGGTTAGCAACACGTGCGCGCAATATTTTATTTGAGAATTCTGTTTTTAACCATTAAAGTGTATTAAAAAGCATACATAGTTAGCAATATGTCTATTCGGGAGAAGCTGCTGATGAAGAAG
***********************************************************.....(((((.....((((..(((.((.......((((.(((((((..(((((...........)))))..))))))).....))))...........)).)))..))))..)))))************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553485
Chicharo_3 day-old ovaries
 SRR902009
testis
 SRR902008
ovaries
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 M053
female body
 M024
male body
...........................................................TGCGTGGAACTATCGAATTGGCGAT...................................................................................................................................................................... 25 0 1 20.00 20 18 0 0 0 2 0 0 0 0
...........................................................TGCGTGGAACTATCGAATTGGCAAT...................................................................................................................................................................... 25 1 1 7.00 7 3 2 2 0 0 0 0 0 0
.........................................................TTTGCGTGGAACTATCGAATTGGCGAT...................................................................................................................................................................... 27 0 1 6.00 6 6 0 0 0 0 0 0 0 0
..........................................................TTGCGTGGAACTATCGAATTGGCGAT...................................................................................................................................................................... 26 0 1 6.00 6 5 0 0 0 0 0 0 0 1
...........................................................TGCGTGGAACTATCGAATTGGCAATTAT................................................................................................................................................................... 28 1 1 4.00 4 1 2 1 0 0 0 0 0 0
........................................................................................................................................................TATTTTATTTGAGAATTCTGTTTT.......................................................................... 24 0 1 4.00 4 2 0 0 1 0 0 1 0 0
.................................................................................................................................................................TGAGAATTCTGTTTTTAACCATTAAAG.............................................................. 27 0 1 3.00 3 3 0 0 0 0 0 0 0 0
....................................................................................TATCGATAAGCACAGCTGGCTGGT.............................................................................................................................................. 24 0 1 3.00 3 1 0 0 2 0 0 0 0 0
...............................................................TGGAACTATCGAATTGGCAATTAT................................................................................................................................................................... 24 1 1 3.00 3 0 3 0 0 0 0 0 0 0
......................................................................................................................TTCGGGGTGAATGGTTAGCAACACGTG......................................................................................................... 27 0 1 3.00 3 1 0 0 0 2 0 0 0 0
..........................................................TTGCGTGGAACTATCGAATTGGCAA....................................................................................................................................................................... 25 1 1 3.00 3 0 1 2 0 0 0 0 0 0
..........................................................................................................................................................................................................TACATAGTTAGCAATATGTCTATTCGGGA................... 29 0 1 3.00 3 2 0 0 0 0 1 0 0 0
..........................................................TTGCGTGGAACTATCGAATTGGCAAT...................................................................................................................................................................... 26 1 1 3.00 3 0 2 1 0 0 0 0 0 0
.............................................................................TGGCGATTATCGATAAGCACAGCTGGC.................................................................................................................................................. 27 0 1 3.00 3 2 0 0 0 0 0 0 1 0
....................................................................................TATCGATAAGCACAGCTGGCTGGC.............................................................................................................................................. 24 1 1 2.00 2 0 0 2 0 0 0 0 0 0
...........................................................................................................................................................TTTATTTGAGAATTCTGTTTTTAACCATT.................................................................. 29 0 1 2.00 2 1 0 0 0 0 1 0 0 0
...........................................................TGCGTGGAACTATCGAATTGGCAATA..................................................................................................................................................................... 26 2 1 2.00 2 0 1 1 0 0 0 0 0 0
...................................................................................................................TGTTTCGGGGTGAATGGTTAGCAACACG........................................................................................................... 28 0 1 2.00 2 1 0 0 0 0 1 0 0 0
..................................................................................ATTATCGATAAGCACAGCTGGCTGGT.............................................................................................................................................. 26 0 1 2.00 2 2 0 0 0 0 0 0 0 0
....................................................................................................TGGCTGGCTATCGTTTGTTTCGGGG............................................................................................................................. 25 1 1 2.00 2 0 0 0 0 2 0 0 0 0
............................................................................................................................................................TTATTTGAGAATTCTGTTTTTAACCATT.................................................................. 28 0 1 2.00 2 2 0 0 0 0 0 0 0 0
...........................................................TGCGTGGAACTATCGAATTGGCAA....................................................................................................................................................................... 24 1 1 2.00 2 0 0 2 0 0 0 0 0 0
...................................................................................TTATCGATAAGCACAGCTGGCTGGT.............................................................................................................................................. 25 0 1 2.00 2 2 0 0 0 0 0 0 0 0
.........................................................TTTGCGTGGAACTATCGAATTGGCAAT...................................................................................................................................................................... 27 1 1 2.00 2 0 0 2 0 0 0 0 0 0
................................................................................................................GTTTGTTTCGGGGTGA.......................................................................................................................... 16 0 1 2.00 2 0 0 0 2 0 0 0 0 0
.........................................................TTTGCGTGGAACTATCGAATTGGCAA....................................................................................................................................................................... 26 1 1 2.00 2 0 2 0 0 0 0 0 0 0
..............TTGAATGATAATAGATAGATTAATTTGAT............................................................................................................................................................................................................... 29 0 1 1.00 1 1 0 0 0 0 0 0 0 0
....................................................................................TATCGATAAGCACAGCTGGCTGGCTAT........................................................................................................................................... 27 1 1 1.00 1 0 1 0 0 0 0 0 0 0
..........................................................TTGCGTGGAACTATCGAATTGGC......................................................................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0
............................................................................TTGGCGATTATCGATAAGCACAGCTGGC.................................................................................................................................................. 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...............................................................................................................................AATGGTTAGCAACACG........................................................................................................... 16 0 1 1.00 1 0 0 0 1 0 0 0 0 0
...................................................................................TTATCGATAAGCACAGCTGGCTGGTTAT........................................................................................................................................... 28 0 1 1.00 1 0 0 0 1 0 0 0 0 0
........................................................................................................TGGCTATCGTTTGTTTCGGGGTGAATG....................................................................................................................... 27 1 1 1.00 1 1 0 0 0 0 0 0 0 0
...............................................................TGGAACTATCGAATTGGCGATT..................................................................................................................................................................... 22 0 1 1.00 1 0 0 0 1 0 0 0 0 0
...................................................................................................................TGTTTCGGGGTGAATGGTTAGCAACACGTG......................................................................................................... 30 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...........................................................................................................................................CACGTGCGCGCAATATTTTATTTGA...................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...........................................................TGCGTGGAACTATCGAATTGGCAAA...................................................................................................................................................................... 25 2 1 1.00 1 0 0 1 0 0 0 0 0 0
.......................................................CATTTGCGTGGAACTATCGAATTGGCGA....................................................................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................ATATGTCTATTCGGGAGAAGCTGCGC......... 26 2 1 1.00 1 0 0 0 1 0 0 0 0 0
......GTCCCATTTTGAATGATAATAGATAGAT........................................................................................................................................................................................................................ 28 1 1 1.00 1 1 0 0 0 0 0 0 0 0
............TTTTGAATGATAATAGATAGATTAAT.................................................................................................................................................................................................................... 26 0 1 1.00 1 0 0 0 1 0 0 0 0 0
.............................................................................................................................TGAATGGTTAGCAAC.............................................................................................................. 15 0 1 1.00 1 0 0 0 1 0 0 0 0 0
......................................................................................................................TTCGGGGTGAATGGTTAGCAACACG........................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................TCTATTCGGGAAAAGCTGCTGATGAA.... 26 1 1 1.00 1 0 0 1 0 0 0 0 0 0
..........................................................................................................................................................................................................................TGTCTATTCGGGAGAAGCTGCTGA........ 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...............................................................TAGAACTATCGAATTGGCGATTATCGA................................................................................................................................................................ 27 1 1 1.00 1 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................TTTGAGAATTCTGTTTTTAACCATT.................................................................. 25 0 1 1.00 1 0 0 0 0 1 0 0 0 0
.............................................................................TGGCAATTATCGATAAGCACAGCTGGCA................................................................................................................................................. 28 2 1 1.00 1 0 1 0 0 0 0 0 0 0
.................................................................................................................................................................................................TAAAAAGCATACATACTTAGCAATA................................ 25 1 1 1.00 1 0 1 0 0 0 0 0 0 0
................................................................................CAATTATCGATAAGCACAGCTGGCTGGC.............................................................................................................................................. 28 2 1 1.00 1 1 0 0 0 0 0 0 0 0
.......................................................................................................................TCGGGGTGAATGGTTAGCAACACGTGC........................................................................................................ 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0
..............................................................................................................TCGTTTGTTTCGGGGTGAATGGTTAGC................................................................................................................. 27 0 1 1.00 1 0 0 0 0 1 0 0 0 0
..........................................................TTGCGTGGAACTATCGAATTGGCAATA..................................................................................................................................................................... 27 2 1 1.00 1 0 1 0 0 0 0 0 0 0
...........................................................................................................................................................TTTATTTGAGAATTCTGTTTTTAACCA.................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...................................................................................................................TGTTTCGGGGTGAATGGT..................................................................................................................... 18 0 1 1.00 1 0 0 0 1 0 0 0 0 0
...................................................................TCTATCGAATTGGCGATTATCGATA.............................................................................................................................................................. 25 1 1 1.00 1 0 0 0 1 0 0 0 0 0
...............................................................TGGAACTATCGAATTGGCAATTATC.................................................................................................................................................................. 25 1 1 1.00 1 0 1 0 0 0 0 0 0 0
...........................................................GGCGTGGAACTATCGAATTGGCGAT...................................................................................................................................................................... 25 1 1 1.00 1 1 0 0 0 0 0 0 0 0
...........................................................................ATTGGCAATTATCGGTAAGCACAGCTGGC.................................................................................................................................................. 29 2 1 1.00 1 1 0 0 0 0 0 0 0 0
...........................................................TGCGTGGAACTATCGAATTGGCAATTA.................................................................................................................................................................... 27 1 1 1.00 1 0 0 1 0 0 0 0 0 0
...........................................................................................................TTATCGTTTGTTTCGGGGT............................................................................................................................ 19 0 1 1.00 1 0 0 0 1 0 0 0 0 0
...........................................................................ATTGGCGATTATCGATAAGCACAGCTGGC.................................................................................................................................................. 29 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................TAGTTAGCAATATGTCTATTCGGGAGA................. 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0
........................................................TTTTGCGTGGAACTATCGAATTGGCGA....................................................................................................................................................................... 27 1 1 1.00 1 0 0 0 0 1 0 0 0 0
..........................................................................................................................................................................................................................TGTCTATTCGGGAAAAGCTGCTG......... 23 1 1 1.00 1 0 0 1 0 0 0 0 0 0
......................................................................................TCGATAAGCACAGCTGGCTGGCT............................................................................................................................................. 23 1 1 1.00 1 0 0 0 0 1 0 0 0 0
.........................................................TTTGCGTGGAACTATCGAATTGGCAAA...................................................................................................................................................................... 27 2 1 1.00 1 0 0 1 0 0 0 0 0 0
........................................................................................................TGGTTATCGTTTGTTTCGGGGTGAA......................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................TACTTAGCAATATGTCTATTCGGGAGA................. 27 1 1 1.00 1 0 0 0 0 0 0 1 0 0
....................................................................................................TGGCTGGTTATCGTTTGTTTCGGGG............................................................................................................................. 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0
.............................................................................................................................................................................................................ATTCTTAGCAATATGTCTATTCGGGAGA................. 28 2 1 1.00 1 0 0 0 0 1 0 0 0 0
.............TTTGAATGATAATAGATAGATTAATT................................................................................................................................................................................................................... 26 0 1 1.00 1 0 0 0 0 0 1 0 0 0
...........................................................TGCGTGGAACTATCGAATTGGCAATTAA................................................................................................................................................................... 28 2 1 1.00 1 0 1 0 0 0 0 0 0 0
.........................................................TTTGCGTGGAACTATCGAATTGGCGA....................................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..................................................................AACTATCGAATTGGC......................................................................................................................................................................... 15 0 1 1.00 1 1 0 0 0 0 0 0 0 0
......TTCCCATTTTGAATGATAATAGA............................................................................................................................................................................................................................. 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................TATGTCTATTCGGGAGAAGCTGCTGA........ 26 0 1 1.00 1 0 0 0 0 1 0 0 0 0
...........................................................TGCGTGGAACTATCGAATTGGCAATAA.................................................................................................................................................................... 27 2 1 1.00 1 0 1 0 0 0 0 0 0 0
.............................................................................TGGCAATTATCGATAAGCACAGCTGGC.................................................................................................................................................. 27 1 1 1.00 1 1 0 0 0 0 0 0 0 0
..........................................................TTGCGTGGAACTATCGAATTGGCGA....................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.....................................................................................................................TTTCGGGGTGAATGGTTAGCAACACG........................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0
........................................................TTTTGCGTGGAACTATCGAATTGGGGA....................................................................................................................................................................... 27 2 1 1.00 1 0 0 0 0 1 0 0 0 0
............................................................................................................TATCGTTTGTTTCGGGGTGAATGGTTA................................................................................................................... 27 0 1 1.00 1 0 0 0 1 0 0 0 0 0
.................................................................................................................................TGGTTAGCAACACGTGCGCGCAATA................................................................................................ 25 0 1 1.00 1 0 0 0 0 0 0 0 1 0
.................................................................................................................TTTGTTTCGGGGTGAATGGTTAGCAACACG........................................................................................................... 30 0 1 1.00 1 1 0 0 0 0 0 0 0 0
............................................................................................................TATCGTTTGTTTCGGGGTGAATGGT..................................................................................................................... 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0
.................................................................................................................................................................................................................................TCGGGAGAAGCTGCTGATGAAGAAG 25 0 1 1.00 1 0 0 0 0 1 0 0 0 0
...............................................................................................................................................TGCGCGCAATATTTTATTTGAGAATT................................................................................. 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0
........................................................................................................TGGTTATCGTTTGTTTCGGGGTGAAA........................................................................................................................ 26 1 1 1.00 1 1 0 0 0 0 0 0 0 0
..............................................................GTGGAACTATCGAATTGGCGATTATCG................................................................................................................................................................. 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0
........................................................................................................TGGTTATCGTTTGTTTCGGGGTGA.......................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...........................................................TGCGTGGAACTATCGAATTGGCAATT..................................................................................................................................................................... 26 1 1 1.00 1 1 0 0 0 0 0 0 0 0
.................................TTAATTTGATTCTCTTATCCACCATT............................................................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.........................................................................................................................................................ATATTATTTGAGTATTCTTTTTTT......................................................................... 24 3 6 0.50 3 0 3 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................CTTCGGGCGAAGCTGCTG......... 18 2 12 0.33 4 0 0 0 0 1 0 3 0 0
............................................................................ATTGCGATTATCGATAAGC........................................................................................................................................................... 19 2 3 0.33 1 0 0 0 0 0 0 0 0 1
..............................................................GTGGAACTATAGAAT............................................................................................................................................................................. 15 1 4 0.25 1 0 0 0 0 0 0 1 0 0
......................................................................................................GCTGGTTATCGTTCG..................................................................................................................................... 15 1 7 0.14 1 0 0 0 0 0 0 1 0 0
.............................................................CGTGGAATTCTCGACTTGGC......................................................................................................................................................................... 20 3 17 0.12 2 0 0 0 0 0 0 0 0 2
..................................................................................................................................................................GAGAATTCTGTTTTTT........................................................................ 16 1 17 0.06 1 0 0 0 1 0 0 0 0 0
.................................................................................................................TGTGTTTAGGGGTGAA......................................................................................................................... 16 2 20 0.05 1 0 0 0 0 0 1 0 0 0
...............................................................................................................................ACTGGTAAGTAACACGTG......................................................................................................... 18 3 20 0.05 1 0 0 0 0 0 0 0 1 0

Anti-sense strand reads

TACACTAAGGGTAAAACTTACTATTATCTATCTAATTAAACTAAGAGAATAGGTGGTAAACGCACCTTGATAGCTTAACCGCTAATAGCTATTCGTGTCGACCGACCAATAGCAAACAAAGCCCCACTTACCAATCGTTGTGCACGCGCGTTATAAAATAAACTCTTAAGACAAAAATTGGTAATTTCACATAATTTTTCGTATGTATCAATCGTTATACAGATAAGCCCTCTTCGACGACTACTTCTTC
**************************************************************************.....(((((.....((((..(((.((.......((((.(((((((..(((((...........)))))..))))))).....))))...........)).)))..))))..)))))*********************************************************** 		Read size # Mismatch Hit Count Total Norm Total GSM343915
embryo
 M024
male body		 SRR553487
NRT_0-2 hours eggs
 SRR902009
testis
.......................................................................................GCTATTCGTTTCGACCGACCAG............................................................................................................................................. 22 2 1 1.00 1 1 0 0 0
.....................................................................................................................................................................TCAGGACAAAAATTGGTTATT................................................................ 21 3 4 0.25 1 0 1 0 0
.......................................................................AGCTTCACAGCTACTAGCTA............................................................................................................................................................... 20 3 8 0.13 1 0 0 1 0
...............................................................................................................................................................AAATTCTTCAGACAAAAA......................................................................... 18 2 20 0.05 1 0 0 0 1
......................................................................................................................................................................CAGGACAAAAATTGGTTAT................................................................. 19 3 20 0.05 1 0 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3r:17398527-17398776 + dsi_16252 ATGTGATTCCCATTTTGAATGATAATAGATAGATTAAT-------------------TT--------------------------GATTCTCTTATC-------------------------------------------------------------CACC-ATTTGC-GTG-GA--ACTATCGAATTG-------GCGATTATCGAT--AAGC--A----CAGCTGGCTGG-------TTAT-CGTTTGT--TTCGGGGTGAATGG-----------TTAGCAACACGTGCGCGCAATATTTTATTTGAGA-AT--TCTGTTTT---TAAC----CATTAAAGT--GTATTAAAAAGCATA-------------CATAGT--------TA-GCAATATGTCTATTCGGGAGAAGCTGCTGATGAAGAAG
droSec2 scaffold_0:18231163-18231412 + ATGTGATTCCCATTTTGAATGATAATAGATAGATTAAT-------------------TT--------------------------GATTCTCTTATC-------------------------------------------------------------CACC-TTTTGC-GTG-GA--ACTATCGAATTG-------GCGATTATCGAT--AAGC--A----CAGCTGGCTGG-------CTAT-CGTTTGT--TTCGGGGTGAATGG-----------TTAGCAACACGTGCGCGCAATATTTTATTTGAGA-AT--TCTGTTTT---TAAC----CATTAAAGT--GTATTAAAAAGCATA-------------CATAGT--------TA-GCAATATGTCTATTCGGGAGAAGCTGCTGATGAAGAAG
dm3 chr3R:17861392-17861589 + C--------------------------------------------------------------------------------------------------------------------------------------------------------------ACC-TTTTGC-ATT-GA--ACTATCGAATTG-------GCAATTATCGAT--AGGC--A----CAGCTGGCTGA-------ATAT-CGTTTGC--TTCGGGGTGAATGG-----------TTAGCAACACGTGCGCGCAATATTTTATTTGAGA-AT--TCTGTTTT---TAAC----CATTAAACT--CTATTAAAAAGCATA-------------CATAGT--------TA-GCAATATGTCTATTCGGGAGAAGCTGCTGATGAAGAAG
droEre2 scaffold_4820:10217568-10217767 - C--------------------------------------------------------------------------------------------------------------------------------------------------------------ACCATTTTGCCGGG-AA--ACTATCGAGTCT-------GCAAATATCGAT--AGGC--A----CAGCTGGTGGT-------CTAT-CGTTTGC--TTCGGGGTGAATGA-----------ATAGCAACACGTGCGCGCAATATTTTATTTGGGA-AT--TCTGTTTT---TAGC----CAATAAAGT--GTATTAGAAAGTCAA-------------CTTAAT--------TA-GCACTATGTCTATCCGGGAGAAGCTGCTGATGAAGAAG
droYak3 3R:18698853-18699045 + T--------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGC-GTA-AA--ACTATCGAATCC-------GCATATATCGAT--AAGC--G----CGGCTGGCAGC-------CTAT-CGTTTGC--TTCGGGGTGAATGA-----------ATAGCAACACGTGCGCGCAATATTTTATTTGGGA-AA--TCTGTTTT---TAAC----CATTAAAGT--GTATTAGAAAGCCAA-------------CTTAAG--------TA-GCACCATGTCTATCCGAGAGAAGCTGCTGATGAAGAAG
droEug1 scf7180000409490:1195120-1195292 + ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATCGAT--AGGC--A----CAGCTGTCCGG-------TAAT-CGTTTGC--TTCGGGGTGAATGTCAATTTTTTGGCCTGCAACACGTGCGCGCTTTATTTTATTTGGAA-AT--TCTGTTTT---TAAC----CACTAAAGT--GTATTATAAAG-CAA-------------TTT-----------AA-TCATTATGTCGATCCGAGAAAAGTTGCTGATGAAAAAG
droBia1 scf7180000302402:5897200-5897340 - T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTAGGTGAATGGCATT--TCTGGGCTGCAACACGTGCGCGCTTTATTTTATTCGAGA-AT--TCTGTTTT---TAAC----CATTAGAGT--TTACTAAGTAGCCAA-------------CTAACA--------CA-GCATTATGTCCATCCGGGAGAAGCTGCTGATGAAGAAG
droTak1 scf7180000415711:1226124-1226268 - ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GC--TTCGGTGTGAATGTCATT-TCGTGGACTGCAACACGTGCGCGGTTTATTTTATTCGACGATT--TCTGTTTT---TAAC----CATTAAAGT--GTATTAAAAGGCCAA-------------CTAACT--------TA-GCATTATGTCCATCCGGGAGAAGCTGCTGATGAAGAAG
droEle1 scf7180000491212:2339191-2339312 + ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAACACGTGCGC--CTTATTTTATTCTGAA-AT--TCTGTTTT---TAAC----CATTAAAGT--GTATTAAATAATTAA----AAACACAAACTAATC--------CA-GCAGAATGTCGATTCGTGAGAAGCTGCTGATGAAGAAG
droRho1 scf7180000780293:172482-172813 - ATGTGATTTCCCT-CGAAATTTTATTAGAATGATAAATGTCAAGCCTCACAAAATTATC--------------------------AATTTTCTTATC---------------AAGCAAAACCGGTTTATTAAATTCCAAAAATAGTGGTTTAAAAATACACC-ATTTGA-AAA-AA--AATATCGCTT-G-----CCCCAACTATCGAT--GAAA--C----CAGCTGTAAG--------TTAT-CGCGTTC--TTCGGGGTGAATGGCAATTTAGC-GACTGCAACACGTGCGCGCTTAGTTTTATTCGGAA-AT--TCAGTTTT---TAAC----CATTAAAGT--GTATTAAGTAACTGA----AAA-ACAGACCAGTC--------CA-GCAGAATGTCGATCCGGGAGAAGCTGCTGATGAAAAAG
droFic1 scf7180000454106:1010921-1011189 + ATGAATTATTCATATTAAATTGTTAAATATATATGAAT-------------------TTAAAATATTT-AATTGTTTTCAAAT----------------------------------------------------------------------------TCC-TTTTTT-TTGGAAACGAT---ATCCCC-------GCAACTATCGAT--AAAC--A----CAGCTGTGCGA-------ATAT-CGTTTGC--TTCGGGGTGAATGGCAAATTC--AGGCTGCAACACGTGCGCGCTGTATTATATTCTGAA-AT--TCTGTTTT---TAAC----CAGTAAAGT--ATATTAAGAAGGCAA-------------TTTTTA--------CT-GCATTATGTCGATTCGGGAGAAGCTGCTGATGAAGAAG
droKik1 scf7180000302461:2241020-2241199 - G------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A--ACTATCGCCTTC-------GCAACTATCGAT--AGAT--A----CTGTCATATGTTTAATCGTTAT-CGC---------T----------------AGT-TGCTGCAACACGTGCGCGCT-TCTTTTATAAGGAA-ATCTTTTGTTTT---TAAC----CATTAAAAT--ATATTAAAAACGTAA-------------CCCACT--------AA-GCACCATGTCCATCCGGGAGAAGCTGCTAATGAAGAAG
droAna3 scaffold_13340:8868330-8868446 + ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAACACGTGCGCGCT-TGTTTTAGTCCGGA-AT--CTTGTTTTTCTTTAC----CATTTAAAT--CAATTAAAATATTTA-------------AGAACT--------CT-CCAAAATGTCGATTCGGGAGAAGCTGCTGATGAAGAAG
droBip1 scf7180000396712:22616-22730 + ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAACACGTGCGCGCT-TGTTTAGTTC-GGA-AT--CTTGTTTTTCTTTAC----CATTAAA-T--CTATTAAAACATCTA-------------AAAA-C--------TAGCAAAAATGTCGATTCGGGAGAAGCTGCTGATGAAGAAG
dp5 2:16457053-16457175 - T--------------------------------------------------------------------------------------------------------------------------------------------------------------GC------------------------------------------------------------------------------------------------T----------------------AGGCAACACGTGCGCGCT-TGTTTTGCACG-AA-AT--TTTGTTTT---AAGC---ACATCTTAGTACATATTAA-TAGATAATTTA---------ATA--A--------CC-GCAACATGTCGATCAGGGAGAAACTGCTGATGAAGAAG
droPer2 scaffold_0:3939651-3939773 + T--------------------------------------------------------------------------------------------------------------------------------------------------------------GC------------------------------------------------------------------------------------------------T----------------------AGGCAACACGTGCGCGCT-TGTTTTGCACG-AA-AT--TTTGTTTT---AAGC---ACATCTTAGTACATATTAA-TAGATAATTTA---------ATA--A--------CC-GCAACATGTCGATCAGGGAGAAACTGCTGATGAAGAAG
droWil2 scf2_1100000004943:11966199-11966303 + ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAACACGTGCGCGCTGTTTTTTCGTTTAAG-AT--TTTATTTT---AAAC----TAATATA-T--AAATTAAATA------------------------------TTAC-TAATCATGTCGATACGGGAGAAGCTGCTGATGAAGAAA
droVir3 scaffold_13047:8627750-8628051 - GCTTTATTTCTGCGTTAAATGGTAC-GTTTATATTTAA---------------A---TTAAATCATTTAAATTGAATACAAATTAAATTTTCAAAACAGCAATTTTTGTGTCATA--------------------------------------------------------CGGAAATGTTATCGAATATTCATATGCGATCTATCGAT--AAACACATACACAGCTGTTTAG-------CAATTTGTCTACTTTTTAATGTGAATGGCAAAATCGTGGACTGCAACACGTGCGCGTT-TGTTTTATTCCAAG-TTT-TTTG----------ATATACAT----CT--GTTTTAAA-------------------------ACCGCAATTCC-TTAAAATGTCGATTAGAGAAAAGCTTCTTATGAAAAAA
droMoj3 scaffold_6540:27513318-27513493 + T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCGAGTAT-------ATGTATATCGATTTAACT--ACGCCCAGCTGTTTGT-------GGAT-TTTTAGCTATTACATGTGAATGGCAATATCGTGGCCCTCAACACGTGCGCGTT-TGTTTTATTCC-AA-GT--TGTGTTTT---CAT-------------------------------------------------ACCGCAATTCC-TTAAAATGTCGATCCGGGAAAAACTCCTAATGAAAAAA
droGri2 scaffold_15074:995262-995449 + G----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATAT-------GTGAATATTTGC--ACGC--A----CAGCTGTTTTG-------CATT-TGTCGCCTTTTCGATGTGAATGGCAATATCGTGGACTTCAACACGTGCGAGCT-TCTTTTACTATACA-TT--TTTGTACATTTTTGTT-----TTATA-T--CTGTTTAAG---G--------------------AGTGCAATAGC-TTAAAATGTCAATACGCGAGAAATTGCTGATGAAGAAA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
ATGTGATTCCCATTTTGAATGATAATAGATAGATTAAT-------------------TT--------------------------GATTCTCTTATC-------------------------------------------------------------CACC-ATTTGC-GTG-GA--ACTATCGAATTG-------GCGATTATCGAT--AAGC--A----CAGCTGGCTGG-------TTAT-CGTTTGT--TTCGGGGTGAATGG-----------TTAGCAACACGTGCGCGCAATATTTTATTTGAGA-AT--TCTGTTTT---TAAC----CATTAAAGT--GTATTAAAAAGCATA-------------CATAGT--------TA-GCAATATGTCTATTCGGGAGAAGCTGCTGATGAAGAAGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
......................................................................................................................................................................TGC-GTG-GA--ACTATCGAATTG-------GCGAT.....................................................................................................................................................................................................................................25120.0020000000182000000000
....................................................................................................................................................................TTTGC-GTG-GA--ACTATCGAATTG-------GCGAT.....................................................................................................................................................................................................................................2716.00600000060000000000
.....................................................................................................................................................................TTGC-GTG-GA--ACTATCGAATTG-------GCGAT.....................................................................................................................................................................................................................................2616.00601000050000000000
...........................................................................................................................................................................................................................................................................................................TATTTTATTTGAGA-AT--TCTGTTTT---......................................................................................................2414.00400000020011000000
....................................................................................................................................................................................................................................................................................................................TGAGA-AT--TCTGTTTT---TAAC----CATTAAAG......................................................................................2713.00300000030000000000
..........................................................................................................................................................................................................TATCGAT--AAGC--A----CAGCTGGCTGG-------T..............................................................................................................................................................................................2413.00300000010002000000
..............................................................................................................................................................................................................................................................TTCGGGGTGAATGG-----------TTAGCAACACGTG...........................................................................................................................................2713.00300000012000000000
.........................................................................................................................................................................................................................................................................................................................................................................TA-------------CATAGT--------TA-GCAATATGTCTATTCGGGA...................2913.00300000020100000000
............................................................................................................................................................................................TG-------GCGATTATCGAT--AAGC--A----CAGCTGGC.........................................................................................................................................................................................................2713.00300010020000000000
..........................................................................................................................................................................................................TATCGAT--AAGC--A----CAGCTGGCTGG-------C..............................................................................................................................................................................................2412.00200000000000020000
..............................................................................................................................................................................................................................................................................................................TTTATTTGAGA-AT--TCTGTTTT---TAAC----CATT..........................................................................................2912.00200000010100000000
.........................................................................................................................................................................................................................................................TGT--TTCGGGGTGAATGG-----------TTAGCAACACG.............................................................................................................................................2812.00200000010100000000
........................................................................................................................................................................................................ATTATCGAT--AAGC--A----CAGCTGGCTGG-------T..............................................................................................................................................................................................2612.00200000020000000000
...............................................................................................................................................................................................................................................................................................................TTATTTGAGA-AT--TCTGTTTT---TAAC----CATT..........................................................................................2812.00200000020000000000
.........................................................................................................................................................................................................TTATCGAT--AAGC--A----CAGCTGGCTGG-------T..............................................................................................................................................................................................2512.00200000020000000000
......................................................................................................................................................................................................................................................GTTTGT--TTCGGGGTGA.......................................................................................................................................................................1612.00200000000002000000
..............TTGAATGATAATAGATAGATTAAT-------------------TT--------------------------GAT.......................................................................................................................................................................................................................................................................................................................................................2911.00100000010000000000
.....................................................................................................................................................................TTGC-GTG-GA--ACTATCGAATTG-------GC........................................................................................................................................................................................................................................2311.00100000010000000000
...........................................................................................................................................................................................TTG-------GCGATTATCGAT--AAGC--A----CAGCTGGC.........................................................................................................................................................................................................2811.00100000010000000000
.......................................................................................................................................................................................................................................................................AATGG-----------TTAGCAACACG.............................................................................................................................................1611.00100000000001000000
.........................................................................................................................................................................................................TTATCGAT--AAGC--A----CAGCTGGCTGG-------TTAT-..........................................................................................................................................................................................2811.00100000000001000000
...........................................................................................................................................................................TG-GA--ACTATCGAATTG-------GCGATT....................................................................................................................................................................................................................................2211.00100000000001000000
.........................................................................................................................................................................................................................................................TGT--TTCGGGGTGAATGG-----------TTAGCAACACGTG...........................................................................................................................................3011.00100000010000000000
..............................................................................................................................................................................................................................................................................................CACGTGCGCGCAATATTTTATTTGA........................................................................................................................2511.00100000010000000000
.................................................................................................................................................................C-ATTTGC-GTG-GA--ACTATCGAATTG-------GCGA......................................................................................................................................................................................................................................2811.00100000010000000000
............................................................................................................................................................................................................................................................................................................................................................................................................ATATGTCTATTCGGGAGAAGCTGCGC.........2611.00100000000001000000
............TTTTGAATGATAATAGATAGATTAAT-------------------......................................................................................................................................................................................................................................................................................................................................................................................2611.00100000000001000000
.....................................................................................................................................................................................................................................................................TGAATGG-----------TTAGCAAC................................................................................................................................................1511.00100000000001000000
..............................................................................................................................................................................................................................................................TTCGGGGTGAATGG-----------TTAGCAACACG.............................................................................................................................................2511.00100000010000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................TGTCTATTCGGGAGAAGCTGCTGA........2411.00100000010000000000
..................................................................................................................................................................................................................................................................................................................TTTGAGA-AT--TCTGTTTT---TAAC----CATT..........................................................................................2511.00100000001000000000
...............................................................................................................................................................................................................................................................TCGGGGTGAATGG-----------TTAGCAACACGTGC..........................................................................................................................................2711.00100000000000001000
...................................................................................................................................................................................................................................................T-CGTTTGT--TTCGGGGTGAATGG-----------TTAGC...................................................................................................................................................2711.00100000001000000000
..............................................................................................................................................................................................................................................................................................................TTTATTTGAGA-AT--TCTGTTTT---TAAC----CA............................................................................................2711.00100000010000000000
.........................................................................................................................................................................................................................................................TGT--TTCGGGGTGAATGG-----------T.......................................................................................................................................................1811.00100000000001000000
................................................................................................................................................................................................................................................TTAT-CGTTTGT--TTCGGGGT.........................................................................................................................................................................1911.00100000000001000000
..........................................................................................................................................................................................ATTG-------GCGATTATCGAT--AAGC--A----CAGCTGGC.........................................................................................................................................................................................................2911.00100000010000000000
..........................................................................................................................................................................................................................................................................................................................................................................................TAGT--------TA-GCAATATGTCTATTCGGGAGA.................2711.00100000010000000000
......................................................................................................................................................................................................................................TGG-------TTAT-CGTTTGT--TTCGGGGTGAA......................................................................................................................................................................2511.00100000010000000000
..................................................................................................................................................................................................................................TGGCTGG-------TTAT-CGTTTGT--TTCGGGG..........................................................................................................................................................................2511.00100000000001000000
.............TTTGAATGATAATAGATAGATTAAT-------------------T.....................................................................................................................................................................................................................................................................................................................................................................................2611.00100000000100000000
....................................................................................................................................................................TTTGC-GTG-GA--ACTATCGAATTG-------GCGA......................................................................................................................................................................................................................................2611.00100000010000000000
...............................................................................................................................................................................A--ACTATCGAATTG-------GC........................................................................................................................................................................................................................................1511.00100000010000000000
......TTCCCATTTTGAATGATAATAGA..................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000010000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................TATGTCTATTCGGGAGAAGCTGCTGA........2611.00100000001000000000
.....................................................................................................................................................................TTGC-GTG-GA--ACTATCGAATTG-------GCGA......................................................................................................................................................................................................................................2511.00100000010000000000
...........................................................................................................................................................................................................................................................T--TTCGGGGTGAATGG-----------TTAGCAACACG.............................................................................................................................................2611.00100000010000000000
.................................................................................................................................................................................................................................................TAT-CGTTTGT--TTCGGGGTGAATGG-----------TTA.....................................................................................................................................................2711.00100000000001000000
.........................................................................................................................................................................................................................................................................TGG-----------TTAGCAACACGTGCGCGCAATA..................................................................................................................................2511.00100010000000000000
.......................................................................................................................................................................................................................................................TTTGT--TTCGGGGTGAATGG-----------TTAGCAACACG.............................................................................................................................................3011.00100000010000000000
.................................................................................................................................................................................................................................................TAT-CGTTTGT--TTCGGGGTGAATGG-----------T.......................................................................................................................................................2511.00100000000001000000
......................................................................................................................................................................................................................................................................................................................................................................................................................TCGGGAGAAGCTGCTGATGAAGAAG2511.00100000001000000000
..................................................................................................................................................................................................................................................................................................TGCGCGCAATATTTTATTTGAGA-AT--T................................................................................................................2611.00100000010000000000
......................................................................................................................................................................................................................................TGG-------TTAT-CGTTTGT--TTCGGGGTGAAA.....................................................................................................................................................................2611.00100000010000000000
..........................................................................................................................................................................GTG-GA--ACTATCGAATTG-------GCGATTATCG................................................................................................................................................................................................................................2711.00100000010000000000
......................................................................................................................................................................................................................................TGG-------TTAT-CGTTTGT--TTCGGGGTGA.......................................................................................................................................................................2411.00100000010000000000
.................................TTAAT-------------------TT--------------------------GATTCTCTTATC-------------------------------------------------------------CACC-ATT.........................................................................................................................................................................................................................................................................2611.00100000010000000000
.....................................................................................................................................................................................................................................................................................................................GAGA-AT--TCTGTTTT---TT....................................................................................................16170.06100000000001000000
droSec2
ATGTGATTCCCATTTTGAATGATAATAGATAGATTAAT-------------------TT--------------------------GATTCTCTTATC-------------------------------------------------------------CACC-TTTTGC-GTG-GA--ACTATCGAATTG-------GCGATTATCGAT--AAGC--A----CAGCTGGCTGG-------CTAT-CGTTTGT--TTCGGGGTGAATGG-----------TTAGCAACACGTGCGCGCAATATTTTATTTGAGA-AT--TCTGTTTT---TAAC----CATTAAAGT--GTATTAAAAAGCATA-------------CATAGT--------TA-GCAATATGTCTATTCGGGAGAAGCTGCTGATGAAGAAGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..........................................................................................................................................................................................................................................................GT--TTCGGGGTGAATGG-----------TT......................................................................................................................................................1811.0010010
.................................................................................................................................................................................................................................................................................................................ATTTGAGA-AT--TCTGTTTT---TAA...................................................................................................2111.0011000
.........................................................................................................................................................................................................................................................TGT--TTCGGGGTGAATGG-----------TTAGCAACACG.............................................................................................................................................2811.0011000
...........................................................................................................................................................................................................................................................................................................................................................................................................................AGAAGCTGCTGATGAAGAA.1911.0010010
.....................................................................................................................................................................................................................................................................TGAATGG-----------TTAGCAACACC.............................................................................................................................................1811.0010001
..................................................................................................................................................................................................................................................................................................................................................................................................................CTATTCGGGAGAAGCTGCT..........1911.0010010
..........................................................................................................................................................................................................................................................................................................................AT--TCTGTTTT---TAAC----CATTAAAGT--...................................................................................2311.0010010
.................................................................................................................................................................C-TTTTGC-GTG-GA--ACTATCGAATTG-------GC........................................................................................................................................................................................................................................2611.0010100
.............................................................................................................................................................................................................................................................................................................................................................................................................TATGTCTATTCGGGAGAAGCTGCT..........2411.0010010
dm3
C--------------------------------------------------------------------------------------------------------------------------------------------------------------ACC-TTTTGC-ATT-GA--ACTATCGAATTG-------GCAATTATCGAT--AGGC--A----CAGCTGGCTGA-------ATAT-CGTTTGC--TTCGGGGTGAATGG-----------TTAGCAACACGTGCGCGCAATATTTTATTTGAGA-AT--TCTGTTTT---TAAC----CATTAAACT--CTATTAAAAAGCATA-------------CATAGT--------TA-GCAATATGTCTATTCGGGAGAAGCTGCTGATGAAGAAGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.......................................................................................................................................................................................................................................................................AATGG-----------TTAGCAACACGTG...........................................................................................................................................18114.00140000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000100020000000001003100000000000010000001000000000000000000000100000000000000002000
.......................................................................................................................................................................................................................................................................AATGG-----------TTAGCAACACGTGCG.........................................................................................................................................2017.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000001000100000000000002020
.................................................................................................................................................................................................................................................TAT-CGTTTGC--TTCGGGGTGAATGG-----------........................................................................................................................................................2415.0050000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................TTAGCAACACGTGCGCGCAAT...................................................................................................................................2114.0040000000000000000000000000000000000000000000000000000000002020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................GC--TTCGGGGTGAATGG-----------TTAGC...................................................................................................................................................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................CGGGGTGAATGG-----------TTAGCAACAC..............................................................................................................................................2213.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................AATGG-----------TTAGCAACACGTGCGCG.......................................................................................................................................2213.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000010000000000000100
...................................................................................................................................................................................................................................................................................................................................................................................................................TATTCGGGAGAAGCTGCTGATGAAGAAG2813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................AT-CGTTTGC--TTCGGGGTGAATGG-----------T.......................................................................................................................................................2413.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101000000000000000001000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................ATTCGGGAGAAGCTGCTGATGAAGAAG2713.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................AT-CGTTTGC--TTCGGGGTGAA......................................................................................................................................................................2013.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000100000
..........................................................................................................................................................................................................................................................GC--TTCGGGGTGAATGG-----------TTA.....................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................GTGAATGG-----------TTAGCAACACG.............................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................GTTTGC--TTCGGGGTGAATGG-----------........................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................CTATTCGGGAGAAGCTGC...........1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000100000000000000
..............................................................................................................................................................................................................................................................TTCGGGGTGAATGG-----------TTAGCAACA...............................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................TGC-ATT-GA--ACTATCGAATT..................................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................ACC-TTTTGC-ATT-GA--ACTATCGAA....................................................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................GC--TTCGGGGTGAATGG-----------TTAG....................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................GAATGG-----------TTAGCAACACGTGTA.........................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................AT-CGTTTGC--TTCGGGGTGAATG....................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000
.................................................................................................................................................................................................................................................TAT-CGTTTGC--TTCGGGGTGAATGG-----------T.......................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
..........................................................................................................................................................................ATT-GA--ACTATCGAATTG-------GCAAT.....................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................AGAAGCTGCTGATGAAGAAG2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................T-CGTTTGC--TTCGGGGTGAATGG-----------TTAGC...................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000
..............................................................................................................................................................................................................................................................................................................................................................................................................ATGTCTATTCGGGAGAAGCTGC...........2211.0010000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................ATGG-----------TTAGCAACACGTGCG.........................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
.......................................................................................................................................................................................................................................................................................................................................................................................................................CGGGAGAAGCTGCTGATGAAGA..2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................CGAATTG-------GCAATTATCGAT--AGG.........................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................TTGC--TTCGGGGTGAATGG-----------TTAGC...................................................................................................................................................2311.0010000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................TGC-ATT-GA--ACTATCGAAT...................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................T--------TA-GCAATATGTCTATTCGGGAGA.................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
......................................................................................................................................................................................................................................................GTTTGC--TTCGGGGTGAATG....................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.........................................................................................................................................................................................................................................................................................................AATATTTTATTTGAGA-AT--.................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................C--TTCGGGGTGAATGG-----------TTAG....................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................GTCTATTCGGGAGAAGCTGC...........2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................CACGTGCGCGCAATATTTTATTTGAGA-.....................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................GGGGTGAATGG-----------TTAGCAACA...............................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................CGGGGTGAATGG-----------TTAGCAAC................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................ATCGAT--AGGC--A----CAGCTGGCTGA-------T..............................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................G-------GCAATTATCGAT--AGGC--A----CAGCTGG..........................................................................................................................................................................................................2511.0010000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................GC--TTCGGGGTGAATGG-----------TT......................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................ATGTCTATTCGGGAGAAGCTG............2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................CGGGGTGAATGG-----------TTAGCAACACGTGC..........................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................CTGA-------ATAT-CGTTTGC--TTCGGG...........................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................AATATTTTATTTGAGA-AT--TCTGTT...........................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................AAACT--CTATTAAAAAGCATA-------------C......................................................2111.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................AT-CGTTTGC--TTCGGGGTG........................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................CGGGGTGAATGG-----------TTAGCAACACG.............................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000
.......................................................................................................................................................................................................................................................................AATGG-----------TTAGCAACACGTGCGCGCAA....................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
.........................................................................................................................................................................................................................................................................TGG-----------TTAGCAACACGTGCG.........................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................TGTTTT---TAAC----CATTAAACT--CTATTAAAAA.........................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................TAGCAACACGTGCGCGCAATATTTTT.............................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................GG-----------TTAGCAACACGTGCGC........................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................ATTATCGAT--AGGC--A----CAGCTGGCTGA-------...............................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................GAATGG-----------TTAGCAACACGTG...........................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................TAAACT--CTATTAAAAAGCATA-------------CATAG..................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................TGC--TTCGGGGTGAATGG-----------TTAGCAA.................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................A-GCAATATGTCTATTCGGGAGAAA...............2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000
.......................................................................................................................................................................................................AATTATCGAT--AGGC--A----CAGC.............................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................TTCGGGGTGAATGG-----------TTAGCT..................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................TATTCGGGAGAAGCTGCTGATGA.....2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................GGTGAATGG-----------TTAGCAACACGTG...........................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................GCAATATGTCTATTCGGGAGA.................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................AGAAGCTGCTGATGAAGA..1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................ATGG-----------TTAGCAACACGTGCGCGT......................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
..............................................................................................................................................................................................................................................................TTCGGGGTGAATGG-----------TTAGC...................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
......................................................................................................................................................................................................................................................GTTTGC--TTCGGGGTGAATGG-----------T.......................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000
.......................................................................................................................................................................................................................................................................AATGG-----------TTAGCAACACGTC...........................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................GGGTGAATGG-----------TTAGCAAC................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
..........................................................................................................................................................................................................................................................GC--TTCGGGGTGAATGG-----------TTAGCAA.................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................TTGC--TTCGGGGTGAATGG-----------........................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................C--TTCGGGGTGAATGG-----------TTAGC...................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................TCTATTCGGGAGAAGCTGCTGATGAAGAAG3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................AATTATCGAT--AGGC--A----CAGCTG...........................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................TTAGCAACACGTGCGCGCAATA..................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................GAT--AGGC--A----CAGCTGGCTGA-------T..............................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................ATCGAT--AGGC--A----CAGCTGGCTGA-------...............................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................GAATGG-----------TTAGCAACACGT............................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................TGAATGG-----------TTAGCAACACGTGCGCG.......................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................TGC--TTCGGGGTGAATGG-----------TTAGCA..................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................TCTATTCGGGAGAAGCTGC...........1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................TTAGCAACACGTGCGCGCAA....................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................C--TTCGGGGTGAATGG-----------TTAGCAACACG.............................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
.....................................................................................................................................................................................................................................................................TGAATGG-----------TTAGCAACACGTGCGCGC......................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
......................................................................................................................................................................TGC-ATT-GA--ACTATCGAATTG-------GCAATTA...................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................ATGG-----------TTAGCAACACGTGC..........................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................TAGT--------TA-GCAATATGTCTATTCGGGA...................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................TGTCTATTCGGGAGAAGCTGCT..........2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................TATCGAT--AGGC--A----CAGCTGGCTGA-------A..............................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................CTATTCGGGAGAAGCTGCTGATGA.....2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................GAGAAGCTGCTGATGAAGAAG2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................GC--TTCGGGGTGAATGG-----------TTAGCA..................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................ACC-TTTTGC-ATT-GA--ACTATCGAATTG-------G.........................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................GGGTGAATGG-----------TTAGCAACACG.............................................................................................................................................2111.0010000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................TCGGGAGAAGCTGCTGATGA.....2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................GTTTGC--TTCGGGGTGAATGG-----------TTAGC...................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
droEre2
C--------------------------------------------------------------------------------------------------------------------------------------------------------------ACCATTTTGCCGGG-AA--ACTATCGAGTCT-------GCAAATATCGAT--AGGC--A----CAGCTGGTGGT-------CTAT-CGTTTGC--TTCGGGGTGAATGA-----------ATAGCAACACGTGCGCGCAATATTTTATTTGGGA-AT--TCTGTTTT---TAGC----CAATAAAGT--GTATTAGAAAGTCAA-------------CTTAAT--------TA-GCACTATGTCTATCCGGGAGAAGCTGCTGATGAAGAAGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
............................................................................................................................................................................................................................................................................................................................................................................................................................GAAGCTGCTGATGAAGAAG1911.0010001000
........................................................................................................................................................................................................................................................TTGC--TTCGGGGTGAATGA-----------ATAGCA..................................................................................................................................................2411.0010001000
...............................................................................................................................................................................................................................................................................................ACGTGCGCGCAATATTTTATTTGGGA-.....................................................................................................................2611.0010001000
......................................................................................................................................................................................................................................................................GAATGA-----------ATAGCAACACGTGCGCGC......................................................................................................................................2411.0010100000
.......................................................................................................................................................................................................................................................................AATGA-----------ATAGCAACACGTG...........................................................................................................................................1811.0010000010
droYak3
T--------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGC-GTA-AA--ACTATCGAATCC-------GCATATATCGAT--AAGC--G----CGGCTGGCAGC-------CTAT-CGTTTGC--TTCGGGGTGAATGA-----------ATAGCAACACGTGCGCGCAATATTTTATTTGGGA-AA--TCTGTTTT---TAAC----CATTAAAGT--GTATTAGAAAGCCAA-------------CTTAAG--------TA-GCACCATGTCTATCCGAGAGAAGCTGCTGATGAAGAAGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
........................................................................................................................................................................................................................................................TTGC--TTCGGGGTGAATGA-----------ATAGC...................................................................................................................................................2312.00200200000000
.........................................................................................................................................................................................................................................................................................................AATATTTTATTTGGGA-AA--TCT..............................................................................................................2111.00100000010000
....................................................................................................................................................................................................................................................................................................................................................................................................................ATCCGAGAGAAGCTGCTG.........1811.00100100000000
........................................................................................................................................................................................................................................................................................................................................................GT--GTATTAGAAAGCCAA-------------CT.....................................................1911.00101000000000
droEug1
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATCGAT--AGGC--A----CAGCTGTCCGG-------TAAT-CGTTTGC--TTCGGGGTGAATGTCAATTTTTTGGCCTGCAACACGTGCGCGCTTTATTTTATTTGGAA-AT--TCTGTTTT---TAAC----CACTAAAGT--GTATTATAAAG-CAA-------------TTT-----------AA-TCATTATGTCGATCCGAGAAAAGTTGCTGATGAAAAAGSizeHit CountTotal NormTotal
No Reads
droBia1
T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTAGGTGAATGGCATT--TCTGGGCTGCAACACGTGCGCGCTTTATTTTATTCGAGA-AT--TCTGTTTT---TAAC----CATTAGAGT--TTACTAAGTAGCCAA-------------CTAACA--------CA-GCATTATGTCCATCCGGGAGAAGCTGCTGATGAAGAAGSizeHit CountTotal NormTotal
No Reads
droTak1
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GC--TTCGGTGTGAATGTCATT-TCGTGGACTGCAACACGTGCGCGGTTTATTTTATTCGACGATT--TCTGTTTT---TAAC----CATTAAAGT--GTATTAAAAGGCCAA-------------CTAACT--------TA-GCATTATGTCCATCCGGGAGAAGCTGCTGATGAAGAAGSizeHit CountTotal NormTotal
No Reads
droEle1
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAACACGTGCGC--CTTATTTTATTCTGAA-AT--TCTGTTTT---TAAC----CATTAAAGT--GTATTAAATAATTAA----AAACACAAACTAATC--------CA-GCAGAATGTCGATTCGTGAGAAGCTGCTGATGAAGAAGSizeHit CountTotal NormTotal
No Reads
droRho1
ATGTGATTTCCCT-CGAAATTTTATTAGAATGATAAATGTCAAGCCTCACAAAATTATC--------------------------AATTTTCTTATC---------------AAGCAAAACCGGTTTATTAAATTCCAAAAATAGTGGTTTAAAAATACACC-ATTTGA-AAA-AA--AATATCGCTT-G-----CCCCAACTATCGAT--GAAA--C----CAGCTGTAAG--------TTAT-CGCGTTC--TTCGGGGTGAATGGCAATTTAGC-GACTGCAACACGTGCGCGCTTAGTTTTATTCGGAA-AT--TCAGTTTT---TAAC----CATTAAAGT--GTATTAAGTAACTGA----AAA-ACAGACCAGTC--------CA-GCAGAATGTCGATCCGGGAGAAGCTGCTGATGAAAAAGSizeHit CountTotal NormTotal
No Reads
droFic1
ATGAATTATTCATATTAAATTGTTAAATATATATGAAT-------------------TTAAAATATTT-AATTGTTTTCAAAT----------------------------------------------------------------------------TCC-TTTTTT-TTGGAAACGAT---ATCCCC-------GCAACTATCGAT--AAAC--A----CAGCTGTGCGA-------ATAT-CGTTTGC--TTCGGGGTGAATGGCAAATTC--AGGCTGCAACACGTGCGCGCTGTATTATATTCTGAA-AT--TCTGTTTT---TAAC----CAGTAAAGT--ATATTAAGAAGGCAA-------------TTTTTA--------CT-GCATTATGTCGATTCGGGAGAAGCTGCTGATGAAGAAGSizeHit CountTotal NormTotal
No Reads
droKik1
G------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A--ACTATCGCCTTC-------GCAACTATCGAT--AGAT--A----CTGTCATATGTTTAATCGTTAT-CGC---------T----------------AGT-TGCTGCAACACGTGCGCGCT-TCTTTTATAAGGAA-ATCTTTTGTTTT---TAAC----CATTAAAAT--ATATTAAAAACGTAA-------------CCCACT--------AA-GCACCATGTCCATCCGGGAGAAGCTGCTAATGAAGAAGSizeHit CountTotal NormTotal
No Reads
droAna3
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAACACGTGCGCGCT-TGTTTTAGTCCGGA-AT--CTTGTTTTTCTTTAC----CATTTAAAT--CAATTAAAATATTTA-------------AGAACT--------CT-CCAAAATGTCGATTCGGGAGAAGCTGCTGATGAAGAAGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
............................................................................................................................................................................................................................................................................................................GTTTTAGTCCGGA-AT--CTTGTTT..........................................................................................................2211.001010000
..............................................................................................................................................................................................................................................................................................................TTTAGTCCGGA-AT--CTTGTTTTTCT......................................................................................................2411.001000001
.......................................................................................................................................................................................................................................................................................................................................................................................................T-CCAAAATGTCGATTCGG.....................1811.001010000
droBip1
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAACACGTGCGCGCT-TGTTTAGTTC-GGA-AT--CTTGTTTTTCTTTAC----CATTAAA-T--CTATTAAAACATCTA-------------AAAA-C--------TAGCAAAAATGTCGATTCGGGAGAAGCTGCTGATGAAGAAGSizeHit CountTotal NormTotal
No Reads
dp5
T--------------------------------------------------------------------------------------------------------------------------------------------------------------GC------------------------------------------------------------------------------------------------T----------------------AGGCAACACGTGCGCGCT-TGTTTTGCACG-AA-AT--TTTGTTTT---AAGC---ACATCTTAGTACATATTAA-TAGATAATTTA---------ATA--A--------CC-GCAACATGTCGATCAGGGAGAAACTGCTGATGAAGAAGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
....................................................................................................................................................................................................................................................................................................................................TT---AAGC---ACATCTTAGTACATATTA.............................................................................2411.0010000100000
...................................................................................................................................................................................................................................................................................................................................................................................................................GATCAGGGAGAAACTGCTG.........1911.0010100000000
.......................................................................................................................................................................................................................................................................................................................................................................................................C-GCAACATGTCGATCAGG.....................1811.0010100000000
droPer2
T--------------------------------------------------------------------------------------------------------------------------------------------------------------GC------------------------------------------------------------------------------------------------T----------------------AGGCAACACGTGCGCGCT-TGTTTTGCACG-AA-AT--TTTGTTTT---AAGC---ACATCTTAGTACATATTAA-TAGATAATTTA---------ATA--A--------CC-GCAACATGTCGATCAGGGAGAAACTGCTGATGAAGAAGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...........................................................................................................................................................................................................................................................................................................................................................................................................AACATGTCGATCAGGGAG..................1811.001100000
..........................................................................................................................................................................................................................................................................................................................................................................................A--A--------CC-GCAACATGTCGATCAGGGA...................2311.001100000
...............................................................................................................................................................................................................................................................................................................................................................................................................TGTCGATCAGGGAGAAACTGCTGA........2411.001100000
droWil2
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAACACGTGCGCGCTGTTTTTTCGTTTAAG-AT--TTTATTTT---AAAC----TAATATA-T--AAATTAAATA------------------------------TTAC-TAATCATGTCGATACGGGAGAAGCTGCTGATGAAGAAASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.................................................................................................................................................................................................................................................................................................GTGCGCGCTGTTTTTTCGT...........................................................................................................................1912.00200020
.....................................................................................................................................................................................................................................................................................................................................................................................................TAC-TAATCATGTCGATACGGGAGAAGC..............2711.00101000
...............................................................................................................................................................................................................................................................................................ACGTGCGCGCTGTTTTTTCGTTTAA.......................................................................................................................2511.00100010
...........................................................................................................................................................................................................................................................................................................................................................................................................ATCATGTCGATACGGGAGAAGCT.............2311.00100100
............................................................................................................................................................................................................................................................................................................................................................................................................TCATGTCGATACGGGAGAAGCTGCT..........2511.00101000
................................................................................................................................................................................................................................................................................................CGTGCGCGCTGTTTTTTCGTTTAA.......................................................................................................................2411.00100010
..............................................................................................................................................................................................................................................................................................................................................................................................................ATGTCGATACGGGAGAAGC..............1911.00100100
..........................................................................................................................................................................................................................................................................................................................................................................................................AATCATGTCGATACGGGAGAAGC..............2311.00100010
..........................................................................................................................................................................................................................................................................................................................................................................................................AATCATGTCGATACGGGAGAAGCTGC...........2611.00101000
................................................................................................................................................................................................................................................................................................................................................................................................................GTCGATACGGGAGAAGCTGCTGA........2311.00101000
droVir3
GCTTTATTTCTGCGTTAAATGGTAC-GTTTATATTTAA---------------A---TTAAATCATTTAAATTGAATACAAATTAAATTTTCAAAACAGCAATTTTTGTGTCATA--------------------------------------------------------CGGAAATGTTATCGAATATTCATATGCGATCTATCGAT--AAACACATACACAGCTGTTTAG-------CAATTTGTCTACTTTTTAATGTGAATGGCAAAATCGTGGACTGCAACACGTGCGCGTT-TGTTTTATTCCAAG-TTT-TTTG----------ATATACAT----CT--GTTTTAAA-------------------------ACCGCAATTCC-TTAAAATGTCGATTAGAGAAAAGCTTCTTATGAAAAAASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.................................................................................................................................................................................................................................................................AATGTGAATGGCAAAATCGTGGACT.....................................................................................................................................................2511.001000010000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................CAAAATCGTGGACTGCAACACG.............................................................................................................................................2211.001000000000000000000000000000000000000000000000000000000000000100
................................................................................................................................................................................................................................................................................................CGTGCGCGTT-TGTTTTATTCCAA.......................................................................................................................2311.001000000000000000000000000000000000000000000000000000000000001000
droMoj3
T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCGAGTAT-------ATGTATATCGATTTAACT--ACGCCCAGCTGTTTGT-------GGAT-TTTTAGCTATTACATGTGAATGGCAATATCGTGGCCCTCAACACGTGCGCGTT-TGTTTTATTCC-AA-GT--TGTGTTTT---CAT-------------------------------------------------ACCGCAATTCC-TTAAAATGTCGATCCGGGAAAAACTCCTAATGAAAAAASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...................................................................................................................................................................................................................................................................................GTGGCCCTCAACACGTGCGCGT......................................................................................................................................2211.001100000
...............................................................................................................................................................................................................................................................................................ACGTGCGCGTT-TGTTTTATTCC-AA-GT--.................................................................................................................2611.001100000
droGri2
G----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATAT-------GTGAATATTTGC--ACGC--A----CAGCTGTTTTG-------CATT-TGTCGCCTTTTCGATGTGAATGGCAATATCGTGGACTTCAACACGTGCGAGCT-TCTTTTACTATACA-TT--TTTGTACATTTTTGTT-----TTATA-T--CTGTTTAAG---G--------------------AGTGCAATAGC-TTAAAATGTCAATACGCGAGAAATTGCTGATGAAGAAASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 12:38 PM