ID:

dsi_16187

 Coordinate:

3r:10139126-10139275 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-11.3 -11.1

Flybase annnotation

CDS [3r_10139276_10139533_-]; exon [3r_10139276_10139686_-]; intron [3r_10138867_10139275_-]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
AGAAGCGCAGCGAGCTGGTCAAGCGCATCCCCAACTTCTGGGTGACCTCGGTGAGTACTTCGATCCGCGGCCATGTTTGTCCCTTCCGCGTGTTCGTCTGCTGGGTTCTAGTAGAGCCGCCTAGTTCTTTCGAAGCCCTGAAATGATGGTAATCGCTGCACACATGTACAAGAAATTTTCTCTATTCGAGGCATTTTTTCTTGTTCATCTTTGGGCTGCAATGCCGACACCACCGGCTCCCCGCGCATTT
*****************************************************************************..........(((.((...((((((((...)))))))))))))......**************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 M025
embryo
 O001
Testis
 M023
head
 SRR902008
ovaries
 SRR902009
testis
 GSM343915
embryo
 SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
..............................................................................................................................CTTTCGAGGCCCTGTAAT.......................................................................................................... 18 2 6 45.67 274 200 69 0 0 0 0 0 0 0 5 0
.............................................................................................................................TCTTTCGAGGCCCTGTAAT.......................................................................................................... 19 2 2 8.00 16 14 2 0 0 0 0 0 0 0 0 0
.....CGCAGCGGGCTGGTCAAGCGC................................................................................................................................................................................................................................ 21 1 1 2.00 2 0 0 0 2 0 0 0 0 0 0 0
.............................................................................................................................TCTTTCGAGGCCCTGTAATT......................................................................................................... 20 3 7 2.00 14 9 5 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................CACCGGCTCCCCGCGCAT.. 18 0 1 2.00 2 0 0 0 0 2 0 0 0 0 0 0
......................................................GTGCTTCGATCCGCGGCCATG............................................................................................................................................................................... 21 1 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0
.............................................................................TGTCCCTTCCGCGTGTTCGTC........................................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................TTCTAGTAGAGCCGCCTAGTT............................................................................................................................ 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
....................................................GAGTACTTCGATCCGCGGCC.................................................................................................................................................................................. 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
AGAAGCGCAGCGAGCTGGTCAAGCGCA............................................................................................................................................................................................................................... 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.................................................GGTTAGTACTTCGCTCCGCGAC................................................................................................................................................................................... 22 3 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0
.....................................................AGTACTTCGATCCGCGGC................................................................................................................................................................................... 18 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
........AGCGAGCTGGTCAAGCGCATCC............................................................................................................................................................................................................................ 22 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0
...........................................................................................................................................................................................GAGGCATTTTTTCTTGTTCAT.......................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.............................................................................TGTCCCTTCGGCGCGGTCGTC........................................................................................................................................................ 21 3 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................CTTTCGACGCCCTGTAAT.......................................................................................................... 18 2 4 0.25 1 0 1 0 0 0 0 0 0 0 0 0
................................................CGGTTAGTACTTCGA........................................................................................................................................................................................... 15 1 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................CGAAGCTCTGAACTGA........................................................................................................ 16 2 20 0.15 3 0 0 2 0 0 0 0 0 0 1 0
...............................................................................................................................TTTCGAGGCCCTGTAAT.......................................................................................................... 17 2 20 0.10 2 1 1 0 0 0 0 0 0 0 0 0
...........................................................................................GTACGTGTGCTGGGTTC.............................................................................................................................................. 17 2 15 0.07 1 0 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................ATCGGGCCATTTTTTCTTGT.............................................. 20 3 16 0.06 1 0 0 0 0 0 0 0 0 0 0 1
.............................................................................................................................................................................................................CATCTTTGGGCTGAA.............................. 15 1 18 0.06 1 0 1 0 0 0 0 0 0 0 0 0
.......................................GGGTGACTTCGGTGAGCA................................................................................................................................................................................................. 18 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1
......................................................................................................................................................................................GATTCGAGACATGTTTTCT................................................. 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1
........................................................................................................................................................................................................TTGGTCATCTTTAGGCT................................. 17 2 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0
..............................................CTCGGTGAGGCCTTCG............................................................................................................................................................................................ 16 2 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

TCTTCGCGTCGCTCGACCAGTTCGCGTAGGGGTTGAAGACCCACTGGAGCCACTCATGAAGCTAGGCGCCGGTACAAACAGGGAAGGCGCACAAGCAGACGACCCAAGATCATCTCGGCGGATCAAGAAAGCTTCGGGACTTTACTACCATTAGCGACGTGTGTACATGTTCTTTAAAAGAGATAAGCTCCGTAAAAAAGAACAAGTAGAAACCCGACGTTACGGCTGTGGTGGCCGAGGGGCGCGTAAA
****************************************************************************************************************************..........(((.((...((((((((...)))))))))))))......***************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 M023
head
 SRR553485
Chicharo_3 day-old ovaries
 M024
male body		 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
...............................................................................................................ATCTCGGCGGATCAAGAAAGC...................................................................................................................... 21 0 1 3.00 3 3 0 0 0 0 0 0 0
............................................................................................................ATCATCTCGGCGGATCAAGAA......................................................................................................................... 21 0 1 2.00 2 2 0 0 0 0 0 0 0
..............................................GAGCCACTCATGAAGCTAGGC....................................................................................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0
...............................................................................................................................................................................................GTAAAAAAGAACAAGTAG......................................... 18 0 1 1.00 1 0 1 0 0 0 0 0 0
.................................................CCACTCATGGAGCTAGGCGCC.................................................................................................................................................................................... 21 1 1 1.00 1 0 1 0 0 0 0 0 0
......................................................................................................................................CGGGACTTTACTACCATTAGCGACG........................................................................................... 25 0 1 1.00 1 0 0 0 1 0 0 0 0
...............................................................AGGCGCCGGTACAAACAGGGA...................................................................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0
....................................................................................................................................................................................................................CCCGACGTTACGGCTGTGGTGGC............... 23 0 1 1.00 1 0 1 0 0 0 0 0 0
......................................................CATGAAGCTAGGCGCCGGTACA.............................................................................................................................................................................. 22 0 1 1.00 1 0 0 0 0 1 0 0 0
......................................................................................................CCCAAGATCATCTCGGCG.................................................................................................................................. 18 0 1 1.00 1 0 1 0 0 0 0 0 0
............................................................................................AAGCAGACGACCCAAGATCAT......................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0
..................................GAAGACCCACTAGACCCACTCC.................................................................................................................................................................................................. 22 3 2 0.50 1 0 0 0 0 0 1 0 0
....................................................................................................................GGCGGTTCAAGCAAGATTCG.................................................................................................................. 20 3 8 0.25 2 0 0 0 0 0 0 2 0
..................................................................................................................................................................................................................................TGTGGTGTCCGAGGG......... 15 1 6 0.17 1 0 0 0 0 0 1 0 0
............................................................................................................................AAGAAAGCTTCTGGTCTT............................................................................................................ 18 2 7 0.14 1 0 0 0 0 0 0 1 0
.............................................................................ACAGGGAAGACGCACAG............................................................................................................................................................ 17 2 11 0.09 1 0 0 0 0 0 0 0 1
..............................................................................................................................GAAAGCTTCTGGTCTTT........................................................................................................... 17 2 20 0.05 1 0 0 0 0 0 0 0 1

Generated: 04/24/2015 at 10:30 AM