ID:

dsi_16167

 Coordinate:

3l:16504088-16504237 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-12.8 -12.6 -12.5 -12.5

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

GGTGTGGAATATCTTAAATGAGTTTTATAGCCGGTCTTCGATCTCAAACTGACCCACTTTAGCGATGGCATGAAGAAAACTGCATTTTTCGTGACTTATCAAGGTGTTCTCGTCTAGAAGAAAGGGGCAGGTCAGAACTGAAGTCATTTAGCTGGGTACACTTTCCATTCGTGAACTAATCTGAACAAGAAATACAAAAGGTAGCGCTCGATCATGACCGACGTGGATGTACTCAGTTCGAGAATGAAGT
*******************************************************************....((.......((.(((((...(((((........((((((..(((...)))..))))))))))).....)))))))))****************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 O002
Head
 SRR553488
RT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
.................................................................................................................................GGTCAGAACTGAAGTCATT...................................................................................................... 19 0 1 1.00 1 0 0 1 0 0 0
...................................................................GCATGAAGAAAACTGC....................................................................................................................................................................... 16 0 1 1.00 1 0 1 0 0 0 0
.............................................................................................................TCGTTTAGAAGAAAGGGGCAGGTCAGA.................................................................................................................. 27 1 1 1.00 1 1 0 0 0 0 0
......................................................................................................................................................................ATTCGCGAACTACTCTGA.................................................................. 18 2 3 0.33 1 1 0 0 0 0 0
................................................................................................................................................CATTTAGTTGGGTACTCT........................................................................................ 18 2 7 0.14 1 0 0 0 1 0 0
...........................................................................................TGACTTATCTCGGTGTT.............................................................................................................................................. 17 2 15 0.13 2 0 0 0 0 2 0
.GTGTAGAATATCGTCAATGA..................................................................................................................................................................................................................................... 20 3 8 0.13 1 0 1 0 0 0 0
...............................................................................................................................................TCATTTAGTTGGGTACTCTA....................................................................................... 20 3 9 0.11 1 0 0 0 1 0 0
.................................................................................................................................GGTCAGAACTCAAGT.......................................................................................................... 15 1 11 0.09 1 0 0 0 0 0 1
.............................................................................................................................................................................................................................GGTGGCTGTACTCAGTTGG.......... 19 3 18 0.06 1 0 0 0 1 0 0
.............................................................GGTATGGCATGAAGAAA............................................................................................................................................................................ 17 2 20 0.05 1 0 1 0 0 0 0
...............................................................................................................................................TCATTTAGTTGGGTACT.......................................................................................... 17 2 20 0.05 1 0 0 0 1 0 0
...................................................................................................................................................................................................................................TGTCCTTAGTTCGAGA....... 16 2 20 0.05 1 0 0 0 0 1 0

Anti-sense strand reads

CCACACCTTATAGAATTTACTCAAAATATCGGCCAGAAGCTAGAGTTTGACTGGGTGAAATCGCTACCGTACTTCTTTTGACGTAAAAAGCACTGAATAGTTCCACAAGAGCAGATCTTCTTTCCCCGTCCAGTCTTGACTTCAGTAAATCGACCCATGTGAAAGGTAAGCACTTGATTAGACTTGTTCTTTATGTTTTCCATCGCGAGCTAGTACTGGCTGCACCTACATGAGTCAAGCTCTTACTTCA
******************************************************************************************************....((.......((.(((((...(((((........((((((..(((...)))..))))))))))).....)))))))))******************************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 M023
head
................................................................................................................AGATCTGCTATCCCCG.......................................................................................................................... 16 2 8 0.50 4 0 0 1 2 1 0
................................................................................................................AGATCTTCTATCCCAG.......................................................................................................................... 16 2 15 0.47 7 7 0 0 0 0 0
............................TCGGCCAGAAGGTAG............................................................................................................................................................................................................... 15 1 7 0.43 3 0 3 0 0 0 0
..............................................................................................................GGAGATCTGCTATCCCCG.......................................................................................................................... 18 3 19 0.37 7 1 0 3 3 0 0
................................................................................................................AGATCTTCTATCCCTG.......................................................................................................................... 16 2 20 0.15 3 2 0 1 0 0 0
...................................................................................TAAAAAGCACTGACTA....................................................................................................................................................... 16 1 8 0.13 1 0 1 0 0 0 0
..............................................................................................................GGAGATCTGCTTTCCCTG.......................................................................................................................... 18 3 20 0.10 2 0 0 1 1 0 0
................................................................................................................AGATCTGCTTTCCCTG.......................................................................................................................... 16 2 20 0.10 2 2 0 0 0 0 0
...................................GAAGCTAGAGATTGA........................................................................................................................................................................................................ 15 1 12 0.08 1 0 0 1 0 0 0
......................AAAATCTCGTCCAGAAGGTA................................................................................................................................................................................................................ 20 3 12 0.08 1 0 1 0 0 0 0
........................................................................................................................................................................................................CATCAGGAGCTAGTTCTGG............................... 19 3 19 0.05 1 0 0 0 0 0 1
................................................................................................................CGATCTGCTTTCCCCG.......................................................................................................................... 16 2 20 0.05 1 1 0 0 0 0 0
..............................................................................................................GCAGATCTGCTATCCCTG.......................................................................................................................... 18 3 20 0.05 1 0 0 0 0 1 0
.................................................................................................................................................................................TTAGTCTCGTTCTTTCTGTTT.................................................... 21 3 20 0.05 1 0 0 1 0 0 0

Generated: 04/24/2015 at 05:08 AM