dsi_16146

CGCGGTTTGCTTAGGCTTCAAAGTTTTGTTGACTTAGTTAGTTAAACGTTCCCAATATTTTTCACCATGAAGCTGCTGATTCTTCTTTTTGCGTTCATCGCTCTTGCAAGCAATTCTTTGGCTCTGAAAAATGGCAAGCTCAAATTACCTTGTTTCATAGTTGATCGCCCCATTTCAACTATTTAATGTTTTATTTGTAGAAATCTGTGGATTACCCCCTGCCGCTAATGGCCTTTGCTTGGCATATTTC ************************************************.....((((((((((((.(((..((((.............(((.....))).......)))).)))..)))...))))))))).......(((((.....((((..((((((((..........))))))))..))))....)))))...************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553487 NRT_0-2 hours eggs	M025 embryo	SRR902009 testis	SRR618934 dsim w501 ovaries	SRR553488 RT_0-2 hours eggs
.................................................................................................................................AATGGCAAGCTCAAATTACCT....................................................................................................	21	0	1	1.00	1	0	1	0	0	0
...................................................................................................................................................CCTTGTTACTTAGTTGAACG...................................................................................	20	3	5	0.60	3	3	0	0	0	0
..........................................................................................................................................................................................TGTTTTAATTGTAGAAATCTGC..........................................	22	2	2	0.50	1	1	0	0	0	0
...........................................................................................................AAGCAATTCTTTGGCTCTGAAAAATGAAA..................................................................................................................	29	2	2	0.50	1	0	0	1	0	0
............................................................................................................................TTAAAAATGGCTAGCTCA............................................................................................................	18	2	8	0.25	2	0	0	0	2	0
...................................................................................................................................................................................TATTTAAAGTTTTATTTGTTGGA................................................	23	3	4	0.25	1	1	0	0	0	0
..............................................................CACCATGAACCTGCGGA...........................................................................................................................................................................	17	2	8	0.13	1	0	0	0	1	0
.............................................................................GATTCTTCTTTTTTCATT...........................................................................................................................................................	18	2	20	0.10	2	2	0	0	0	0
.....................................................................................................................TTGGCTATTAAAAATGACAAG................................................................................................................	21	3	10	0.10	1	0	0	0	0	1
............................................................................TGATTCTTCTTATTGGGT............................................................................................................................................................	18	2	12	0.08	1	0	0	0	0	1

GCGCCAAACGAATCCGAAGTTTCAAAACAACTGAATCAATCAATTTGCAAGGGTTATAAAAAGTGGTACTTCGACGACTAAGAAGAAAAACGCAAGTAGCGAGAACGTTCGTTAAGAAACCGAGACTTTTTACCGTTCGAGTTTAATGGAACAAAGTATCAACTAGCGGGGTAAAGTTGATAAATTACAAAATAAACATCTTTAGACACCTAATGGGGGACGGCGATTACCGGAAACGAACCGTATAAAG ************************************************.....((((((((((((.(((..((((.............(((.....))).......)))).)))..)))...))))))))).......(((((.....((((..((((((((..........))))))))..))))....)))))...************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553488 RT_0-2 hours eggs	M024 male body	SRR618934 dsim w501 ovaries	SRR902009 testis	M053 female body	SRR553486 Makindu_3 day-old ovaries	SRR902008 ovaries
.................................................AGGGTTGTAAAACGTCGTACTTC..................................................................................................................................................................................	23	3	1	1.00	1	1	0	0	0	0	0	0
.....AAACGAATCAGCAGTTGCAAAA...............................................................................................................................................................................................................................	22	3	4	0.25	1	0	1	0	0	0	0	0
....................................................................................AAAAAAAGCAAGTAGCGAGA..................................................................................................................................................	20	2	4	0.25	1	0	0	0	1	0	0	0
.............CGGAAGTTTCAGAACAAC...........................................................................................................................................................................................................................	18	2	5	0.20	1	0	1	0	0	0	0	0
.....................................................................................................................................................................................AAATTACCAAAAAAACATCT.................................................	20	2	7	0.14	1	0	0	0	0	1	0	0
...............................................................................................................TTAAGAAACCGACACT...........................................................................................................................	16	1	7	0.14	1	0	0	1	0	0	0	0
......................................................................................................................................................................GGGGGTACAGTGGATAAATT................................................................	20	3	8	0.13	1	0	0	1	0	0	0	0
................................................AAGGGTGATAAAGAGTGGT.......................................................................................................................................................................................	19	2	9	0.11	1	0	0	0	0	0	1	0
................................................................................................................................ATTACCGTTCGAGTT...........................................................................................................	15	1	17	0.06	1	0	0	1	0	0	0	0
...........................................................................................................................................................................................AAAAAAAAACATCTTGAGACA..........................................	21	3	20	0.05	1	0	0	0	1	0	0	0
......................................................................................................................................GTTCGAGTTTTACGGAA...................................................................................................	17	2	20	0.05	1	0	0	1	0	0	0	0
..........................................................................................................................................................................................AAAAAAAAAACATCTTGAGACA..........................................	22	3	20	0.05	1	0	0	0	0	0	0	1
........TGAATCGGAAGTTTCAAGA...............................................................................................................................................................................................................................	19	3	20	0.05	1	1	0	0	0	0	0	0

Species	Coordinate	ID	Alignment
droSim2	2l:3546934-3547183 -	dsi_16146	CGCGGTTTGCTTAGGCTTCAAAGTTTTGTTGACTTAGT-------TAGTTAAACGTTCCCA---------ATAT------------------------------------------TTTTCACCATGAAGCTGCTGATTCTTCTTTTTGCGTTCATCGCTCTTGCAAGCAATTCTTTGGCTCTGAAAAATGGCAAGCTC-----AAATTAC--------------------CTTGTTTCATAGTTG--------------ATC-----------GCCC-CA------------------TTTCAAC----TAT-TTAAT--------GT--TTTATTTGTAGAAATCTGTGGATTACCCCCTGCCGCTAATGG---------------------CCTTTGCTTGGC-ATATTTC
droSec2	scaffold_5:1789262-1789517 -		CGCGGTTTGCTTAGGCTTTAAAGTTTTGTTGACTTAGT-------TAGTTAAAGGTTCCCA---------ATAT------------------------------------------TTTTCACCATGAAGCTGCTGT--CTTCTTTTCGTTTTCGTCGCTCTTGCAAGCAATTCTTTGGCTCTGAAAAATGGCAAGCTC-----AAATTAC--------------------CTTGTTTCATAGTTG--------------ATC-----------GCCC-CA------------------TTTCAAC----TAT-TTAATGTTTTATTGT--TTTATTTGTAGAAATCTGTGGATTACCCCCTGCCGCTAATGG---------------------CCTTTGCTTGGC-ACGTTTC
dm3	chr2L:3693675-3693926 -		CGCGGTTCGCTTAGGCTTCAAAGTTTTGTTGACTAAGT-------CAGTTAAAGGTTCCCA---------ATAT------------------------------------------CTTTCGCCATGAAGCTGCTGATTCTTCTTTTTGTTTTCATCGCTCTTGCAAGCAATTCTTTGGCTCTGAAAAATGGTAAACTT-----AAATTAC--------------------CTTGTTTCATAGTTG--------------ATC-----------GTCC-CA------------------ATTTAAC----TAT-TTAAT--------GTTTTATGTTTGTAGAAATCTGTGGATTACCCGCTGCCGCTAATGGTAAT---------------------TGCTTGGC-ATTGTTT
droEre2	scaffold_4929:3730601-3730852 -		TGGGCTTCGCTTTGGTTTCAGAATTGTTTTGCCTTAGT-------CAGATAAAGGTACCTA---------ATAG------------------------------------------TTTTCGCCATGAAGCTGTTGATTCTTCTTTTTGTGTTCACCGCTCTTGCAACCAATTCTTTGGCTCTGAAAAATGGTATGCCTC-----TATTAC--------------------TTTATTTGATAGTTG--------------ATT-----------TCTC-CA------------------TTTACAC----TTA-TTAAT--------GTTCTATGTTTGTAGAAATTTGTGGATTACCCCCTGCCGAGGAAGG---------------------CTTTTGCAGGGC-ATATTTC
droYak3	2L:3689979-3690232 -		CGGGATTCGTTTTGGTTTCAGAACTTTTTTTCCTTAGT-------AAGTTAAAGGTTCCTA---------ATAT------------------------------------------TTTTCGCCATGAAGCTGCTGATTTTTCTTTTTGTGTTCATCGCTCTGGCATCCAGTTCTTTGGCTCTGAAAAATGGTATGGCATGCACAATTTAC--------------------TTCG-------------------------ATCGTCCTTTGCTT----A---------------AAT-------------------T-T--------ATTCAAAATACACAGAAATCTGTGGTCTTTCCGAGACTCGTGATCCTAAT---------CGTACAGTCATCTGCTTTAT-AAAATTT
droEug1	scf7180000409554:2384565-2384822 +		CAACCGCCGAATAAACTTGAGTTTGTTTTCCTCTGCCC-------CAGCTGAAAGTTCTAA---------ATAT-------------------------------------------TTTCACTATGAAGCTGCTGATCCTCGTTTTTGTGTTCGTCGCCTCTGTGGCCTGTGTTATGGCTCTGAGAAATGGTAAATGACTT--AAATTTCTGTCTTCTTCC---------------------------------------------TCAAGTT----G---------------AA-------------------TATT--------ATTAAATCTTCTCAGAAATCTGTGGTCTACCTCATTCACTTGATGGAGACTTAGAA---TGTAGAATTTCCTGCGAGGC-TTACTTC
droBia1	scf7180000302261:2072618-2072879 -		CGCT-TTTGTTTTAGATTCAGTTTG-TTTCTTCAAAGT-------CAGCTGAGAGCTCTAA---------ATAT------------------------------------------TTTTCACCATGAAGCTCTTGGTACTTTTTCTTATGTTCATCGTCTTTGTGGCCAGTGCGCTGGCTCTAAAAAGTGGTAAGCTA-----AAATATTTGTATTATGAT---------------------TTG--------------A----------TTT----G---------------ATCA-TTTAAAT----------TCA--------ATGACAATTACTCAGAAATATGTGGTCTGCCCCATTCCATTGATGGTGATGTCGAA---CGCAAAATCTCCTGCGAGGC-CTACTTC
droTak1	scf7180000415256:280694-280936 +		CTCGTGTTGTTTTAGCTC-AGGTTTTTCTTGTCTAAAC-------TAGCTAACACTTCTAC---------ATTT------------------------------------------TTTTCACCATGAAGCTA---ATCTTCTTGGTTGTGCTTGTCGCCTATGTGGTCAATTCATGGGCTCTGAAAAATGGTACTTTATG------TTAA--------------------TTTGGT---------TA--T-------ACATA-------G-TTATAT-C--------------------------------------A--------ATCTAATTATTATAGAAATCTGTGGTCAAGTTCCGTTTAAAAATGACGTT---------AATGGGTTAACCTGTCACGC-TTATACG
droEle1	scf7180000490728:420510-420818 -		CCCAGTTCGTTTCAGCTTCAGTTTGATTTGATCAACGC-------CATCTGAAGGTTCTAA---------ATATTTTACTACTATATACACAAATATTTATTACAAAATATTATATACTTTACTATGAAGCTGCTAGTCCTTATCGTTGTGTTCGTCGCCTTTGTGGCCAATTCGTTGGCTCTGAAAAATGGTATTTAT-----AAATCTC--------------------AT--TTTCTTAGTTC--------------ATT-----------CTCA-AT------------------TAATTAC----TAC-CAAATTTTCT---ACCAAATTTATATAGAAGTGTGTGGTCTACCCCATTCCCGTAATGGTGAT---------GGTAGAATGTCCTGCGAGGC-TTATTTC
droRho1	scf7180000779523:417658-417913 -		TTCTCGTCGTTTTAGCCTCAGTTTACTTTTATCAACAC-------CAGGTGCAGGTTCTAAA--------GCAA------------------------------------------TTTCCATTATGAAGCTGCTGATCTTCGTTCTCGTTTTTGCCGCTTTTGTGGCCAGTGCTTTGGCATTGCGAAATGGTATGTAATAC-----T-A-----------------------------------------TATCTCCA-ATCTTCCTTAACTA----A---------------ATCG-T---------------ATTC--------ATAAAATTGATATAGAAATCTGTGGTCTACCCCATTCCCGCAATGGTAAT---------GGCCCAATCTCCTGCGAGGC-TTATATC
droFic1	scf7180000453924:1679787-1680046 -		CTCTGTGCGTCTCAGTTTCAGTTTAC-----TTTGAGC-------TAGCTTGGGGCCCTCAA--------ATAT------------------------------------------TTTTAATCATGAAGCTGCTGATCTTGGTTTTTGTGCTTGCCGCCTTAATGGCAATTTCTACCGCTCTAAAAAATGGTATTTAT-----A--CAAA--------------------CATGTT---------TA---CTTCTAAT-ACCTTTGACAGCTT----G---------------GCCA-C--------------TTTGT--------TTGAAAACTACTTAGAGTTCTGTGGTCTTCCCCACTCCCGAAATGGCGAT---------GGGAGAATCTCCTGCGAGGC-TTACATC
droKik1	scf7180000302270:915752-916015 -		AGTGCCTTGTTTTGGCTTTAGTTTTGATTTTACTTTGC-------TTGCTAAAGGTTCTAAAAATAATATATAT------------------------------------------TCTTTAGAATGAAGTTTCTAATTTTCCTGGCAGTTTTTATTGCTTTTGTGGCCTCGTCCTGGGCCTTGAAAAATGGTGTGTTCTCT-----ACAGAA------TCC----------TTGAC---------TA--A-------AGATA-----------GTT--AA-------ATT-AAA-----------------------T--------AAATAAATATTTTAGAAATCTGTGGTCAAACACATTCCCTAAATGGTAAT---------GGTATAATCGCCTGTGAAGC-CCTTTTC
droAna3	scaffold_12916:5754271-5754528 -		CCCAGGTGGGCTAGGT-TTAGTTTAC------CTTAGTAATTTGACGGCTGAAG-TTTAGA---------ATAA----------------------------------------TTTTTGCACCATGAAGCTGTTGATCTTTCTCGTAGTACTGGCTGCTTTTGCGACTATCTCTGTAGCTGCGAAAAATGGTTTGTTTTCT-----TCACAA------GTT-------------------------TCG-GTTTATT---------------------TA-------ACT-CAAT--AA------GTAT----TTATT-------TCT-CTGAATTCATAGCTATTTGTGGTCTGCCCCACTCCAAAAATGGTGAA------------AGGATGGCCTGTACTGC-CTACATC
droBip1	scf7180000396568:1091928-1092182 +		CGGCTTT------AACTTTAGTTTA-TATATTTTTAGC-------TAGCTGAAAGAACATAA--------ATAT----------------------------------------TAATTTTATTATGAAGGTGTTGATCTTTTTGGCTGCAATTATTGCTCTTCTGGGTACTTCTTTGGCCCTTAAAAATGGTCAGTTATT-------TAT--------------------CCTACTTGAAACTTG--------------ACA-----------AAAA-TATTAATAAATTTA-T--------------------T--T--------ATTTAAAATCAATAGAAATCTGCGGGTTACCCCATTCCCGAAACGGTGAC------------TTAATCTCCTGTGAAGC-CTACATT
dp5	4_group3:5034399-5034589 +		A-------------------------------------------------------------------------------------------------------------------------TTATGAAGTTCTTTCTGCTGCTGGCTGTGCTCGCTGTCTTGGTGGCCAATTCTTTGGCTCTGAAAAATGGTGGGTGATCA-----GCAGAG------ATC-------------------------T--------CT---------------------AG-------ACT-CAAA--AA------CTTA--T-TCATT--------CTTTGATTTCCACAGAAGTTTGTGGCCTTGAGCATTCCCGAAATGGGGAC---------GGACGCATTTCCTGTGAGGC-TTACATC
droPer2	scaffold_1:6525808-6525998 +		A-------------------------------------------------------------------------------------------------------------------------TTATGAAGTTCTTTCTGCTGCTGGCTGTGCTCGCTGTCTTGGTGGCCAATTCTTTGGCTCTGAAAAATGGTCGGTACTCA-----GCAGAG------TTC-------------------------T--------CT---------------------AG-------ACT-CAAA--AA------CTCA--T-TCATT--------CTTTGATTTCCACAGAAGTCTGTGGCCTTGAGCATTCCCGCAATGGGGAC---------GGACGCATTTCCTGTGAGGC-TTACATC
droWil2	scf2_1100000004521:9170980-9170994 -		TGCT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGC-TTCTTTT
droVir3	scaffold_12963:15035076-15035289 -	dvi_11990	T---------------------------------------------AGCTACAAGTTCTCA---------A---------------------------------------------ATCTTAGAATGAAGCTGATTTTATATTTTTTGGTTCTCGCTGCATACGTGGGCAGTTCCTTAGCCCTTAAAAATGGTTAGTAATAG-----ACACTGGAACAAACTTCAAGTTAACT----------------------------------------C----A---------------GCT--T----------TTA-TCATA--------ATATTATCAACATAGAGGTGTGCGGATTGCCACATAATTCAGAAAGTAAC---------GG------CGGGTGCCTGGC-TCACTTC
droMoj3	scaffold_6500:17994648-17994901 -		TTCAGC----TTTAAGTTGAGTT------------AGTTAAT---CAACAGAAGCTCTACG---------AAAA------------------------------------------TATACAAAATGAAACTTGTAGCAGTACTTTGCGTATTCATCGCTGTCTTCGGCGCTTCCATCGCTCTCAAGAATCGTAAGTCT-----AAATACC----------------------TGAT---------TCTA-AATGTCT---------------------CA-------TTT-CTGC--AAGC-AAC----TATCTCTTT--------GTGCTCTGTGCTCAGACATTTGCGGTCTACCGCCAGCCGGTGATGGCATC---------GGCTTGATGAGGTGCTTTGCTATACTTC
droGri2	scaffold_15126:4365570-4365765 -		A----------------------------------------------------------------------------------------------------------------------------TGAAGTCGTTTTTCATTTTTATAGTAGTCATGGCAATTGTTATCAGATCTGTTGCACAGAAAAATCGTGAGTATTAT-----TTGTTGC-----------------AATACTCTTAAAATG--------------AAT-----------TCAC-AA------------------A---------------------------TTATTTATTATAAAGCGAAATGCCGTTTGCCACATTCGAAGAATGGAATTTTAAATGGCCCAAATAACCAATGCTTGGA-TAACATT

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

CGCGGTTTGCTTAGGCTTCAAAGTTTTGTTGACTTAGT-------TAGTTAAACGTTCCCA---------ATAT------------------------------------------TTTTCACCATGAAGCTGCTGATTCTTCTTTTTGCGTTCATCGCTCTTGCAAGCAATTCTTTGGCTCTGAAAAATGGCAAGCTC-----AAATTAC--------------------CTTGTTTCATAGTTG--------------ATC-----------GCCC-CA------------------TTTCAAC----TAT-TTAAT--------GT--TTTATTTGTAGAAATCTGTGGATTACCCCCTGCCGCTAATGG---------------------CCTTTGCTTGGC-ATATTTC	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
...........................................................................................................................................................................................AATGGCAAGCTC-----AAATTAC--------------------CT.....................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

CGCGGTTTGCTTAGGCTTTAAAGTTTTGTTGACTTAGT-------TAGTTAAAGGTTCCCA---------ATAT------------------------------------------TTTTCACCATGAAGCTGCTGT--CTTCTTTTCGTTTTCGTCGCTCTTGCAAGCAATTCTTTGGCTCTGAAAAATGGCAAGCTC-----AAATTAC--------------------CTTGTTTCATAGTTG--------------ATC-----------GCCC-CA------------------TTTCAAC----TAT-TTAATGTTTTATTGT--TTTATTTGTAGAAATCTGTGGATTACCCCCTGCCGCTAATGG---------------------CCTTTGCTTGGC-ACGTTTC	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
.........................................................................................................................ACCATGAAGCTGCTGT--CTT................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1
................................CTTAGT-------TAGTTAAAGGTTCCC..................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0
.....................................T-------TAGTTAAAGGTTCCCA---------ATAT------------------------------------------TTTTCA....................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0

dm3

CGCGGTTCGCTTAGGCTTCAAAGTTTTGTTGACTAAGT-------CAGTTAAAGGTTCCCA---------ATAT------------------------------------------CTTTCGCCATGAAGCTGCTGATTCTTCTTTTTGTTTTCATCGCTCTTGCAAGCAATTCTTTGGCTCTGAAAAATGGTAAACTT-----AAATTAC--------------------CTTGTTTCATAGTTG--------------ATC-----------GTCC-CA------------------ATTTAAC----TAT-TTAAT--------GTTTTATGTTTGTAGAAATCTGTGGATTACCCGCTGCCGCTAATGGTAAT---------------------TGCTTGGC-ATTGTTT	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.....................AGTTTTGTTGACTAAGT-------CAGTTAA..........................................................................................................................................................................................................................................................................................................................................................................	24	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................CTTTGGCTCTGAAAAATG...............................................................................................................................................................................................................................	18	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................TGTTGACTAAGT-------CAGTTAAAGGTT.....................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................GTTCCCA---------ATAT------------------------------------------CTTTCGCC..................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................CTAAGT-------CAGTTAAAGGTTCC...................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

TGGGCTTCGCTTTGGTTTCAGAATTGTTTTGCCTTAGT-------CAGATAAAGGTACCTA---------ATAG------------------------------------------TTTTCGCCATGAAGCTGTTGATTCTTCTTTTTGTGTTCACCGCTCTTGCAACCAATTCTTTGGCTCTGAAAAATGGTATGCCTC-----TATTAC--------------------TTTATTTGATAGTTG--------------ATT-----------TCTC-CA------------------TTTACAC----TTA-TTAAT--------GTTCTATGTTTGTAGAAATTTGTGGATTACCCCCTGCCGAGGAAGG---------------------CTTTTGCAGGGC-ATATTTC	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
No Reads

droYak3

CGGGATTCGTTTTGGTTTCAGAACTTTTTTTCCTTAGT-------AAGTTAAAGGTTCCTA---------ATAT------------------------------------------TTTTCGCCATGAAGCTGCTGATTTTTCTTTTTGTGTTCATCGCTCTGGCATCCAGTTCTTTGGCTCTGAAAAATGGTATGGCATGCACAATTTAC--------------------TTCG-------------------------ATCGTCCTTTGCTT----A---------------AAT-------------------T-T--------ATTCAAAATACACAGAAATCTGTGGTCTTTCCGAGACTCGTGATCCTAAT---------CGTACAGTCATCTGCTTTAT-AAAATTT	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
.......................................................................................................................................................................................................................................................................................................................................................................................AT---------CGTACAGTCATCTGCTT...........	19	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0

droEug1

CAACCGCCGAATAAACTTGAGTTTGTTTTCCTCTGCCC-------CAGCTGAAAGTTCTAA---------ATAT-------------------------------------------TTTCACTATGAAGCTGCTGATCCTCGTTTTTGTGTTCGTCGCCTCTGTGGCCTGTGTTATGGCTCTGAGAAATGGTAAATGACTT--AAATTTCTGTCTTCTTCC---------------------------------------------TCAAGTT----G---------------AA-------------------TATT--------ATTAAATCTTCTCAGAAATCTGTGGTCTACCTCATTCACTTGATGGAGACTTAGAA---TGTAGAATTTCCTGCGAGGC-TTACTTC	Size	Hit Count	Total Norm	Total
No Reads

droBia1

CGCT-TTTGTTTTAGATTCAGTTTG-TTTCTTCAAAGT-------CAGCTGAGAGCTCTAA---------ATAT------------------------------------------TTTTCACCATGAAGCTCTTGGTACTTTTTCTTATGTTCATCGTCTTTGTGGCCAGTGCGCTGGCTCTAAAAAGTGGTAAGCTA-----AAATATTTGTATTATGAT---------------------TTG--------------A----------TTT----G---------------ATCA-TTTAAAT----------TCA--------ATGACAATTACTCAGAAATATGTGGTCTGCCCCATTCCATTGATGGTGATGTCGAA---CGCAAAATCTCCTGCGAGGC-CTACTTC	Size	Hit Count	Total Norm	Total
No Reads

droTak1

CTCGTGTTGTTTTAGCTC-AGGTTTTTCTTGTCTAAAC-------TAGCTAACACTTCTAC---------ATTT------------------------------------------TTTTCACCATGAAGCTA---ATCTTCTTGGTTGTGCTTGTCGCCTATGTGGTCAATTCATGGGCTCTGAAAAATGGTACTTTATG------TTAA--------------------TTTGGT---------TA--T-------ACATA-------G-TTATAT-C--------------------------------------A--------ATCTAATTATTATAGAAATCTGTGGTCAAGTTCCGTTTAAAAATGACGTT---------AATGGGTTAACCTGTCACGC-TTATACG	Size	Hit Count	Total Norm	Total
No Reads

droEle1

CCCAGTTCGTTTCAGCTTCAGTTTGATTTGATCAACGC-------CATCTGAAGGTTCTAA---------ATATTTTACTACTATATACACAAATATTTATTACAAAATATTATATACTTTACTATGAAGCTGCTAGTCCTTATCGTTGTGTTCGTCGCCTTTGTGGCCAATTCGTTGGCTCTGAAAAATGGTATTTAT-----AAATCTC--------------------AT--TTTCTTAGTTC--------------ATT-----------CTCA-AT------------------TAATTAC----TAC-CAAATTTTCT---ACCAAATTTATATAGAAGTGTGTGGTCTACCCCATTCCCGTAATGGTGAT---------GGTAGAATGTCCTGCGAGGC-TTATTTC	Size	Hit Count	Total Norm	Total
No Reads

droRho1

TTCTCGTCGTTTTAGCCTCAGTTTACTTTTATCAACAC-------CAGGTGCAGGTTCTAAA--------GCAA------------------------------------------TTTCCATTATGAAGCTGCTGATCTTCGTTCTCGTTTTTGCCGCTTTTGTGGCCAGTGCTTTGGCATTGCGAAATGGTATGTAATAC-----T-A-----------------------------------------TATCTCCA-ATCTTCCTTAACTA----A---------------ATCG-T---------------ATTC--------ATAAAATTGATATAGAAATCTGTGGTCTACCCCATTCCCGCAATGGTAAT---------GGCCCAATCTCCTGCGAGGC-TTATATC	Size	Hit Count	Total Norm	Total
No Reads

droFic1

CTCTGTGCGTCTCAGTTTCAGTTTAC-----TTTGAGC-------TAGCTTGGGGCCCTCAA--------ATAT------------------------------------------TTTTAATCATGAAGCTGCTGATCTTGGTTTTTGTGCTTGCCGCCTTAATGGCAATTTCTACCGCTCTAAAAAATGGTATTTAT-----A--CAAA--------------------CATGTT---------TA---CTTCTAAT-ACCTTTGACAGCTT----G---------------GCCA-C--------------TTTGT--------TTGAAAACTACTTAGAGTTCTGTGGTCTTCCCCACTCCCGAAATGGCGAT---------GGGAGAATCTCCTGCGAGGC-TTACATC	Size	Hit Count	Total Norm	Total
No Reads

droKik1

AGTGCCTTGTTTTGGCTTTAGTTTTGATTTTACTTTGC-------TTGCTAAAGGTTCTAAAAATAATATATAT------------------------------------------TCTTTAGAATGAAGTTTCTAATTTTCCTGGCAGTTTTTATTGCTTTTGTGGCCTCGTCCTGGGCCTTGAAAAATGGTGTGTTCTCT-----ACAGAA------TCC----------TTGAC---------TA--A-------AGATA-----------GTT--AA-------ATT-AAA-----------------------T--------AAATAAATATTTTAGAAATCTGTGGTCAAACACATTCCCTAAATGGTAAT---------GGTATAATCGCCTGTGAAGC-CCTTTTC	Size	Hit Count	Total Norm	Total
No Reads

droAna3

CCCAGGTGGGCTAGGT-TTAGTTTAC------CTTAGTAATTTGACGGCTGAAG-TTTAGA---------ATAA----------------------------------------TTTTTGCACCATGAAGCTGTTGATCTTTCTCGTAGTACTGGCTGCTTTTGCGACTATCTCTGTAGCTGCGAAAAATGGTTTGTTTTCT-----TCACAA------GTT-------------------------TCG-GTTTATT---------------------TA-------ACT-CAAT--AA------GTAT----TTATT-------TCT-CTGAATTCATAGCTATTTGTGGTCTGCCCCACTCCAAAAATGGTGAA------------AGGATGGCCTGTACTGC-CTACATC	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
.............................................................................................................................................................................................................................................................................................................................................................................AAAAATGGTGAA------------AGGATGGCCTGTAC...........	26	1	1.00	1	0	0	0	0	1	0
....................................................................................................................................................................CGACTATCTCTGTAGCTGCGAAAAATG...............................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
....................................GTAATTTGACGGCTGAAG-T......................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	1	0

droBip1

CGGCTTT------AACTTTAGTTTA-TATATTTTTAGC-------TAGCTGAAAGAACATAA--------ATAT----------------------------------------TAATTTTATTATGAAGGTGTTGATCTTTTTGGCTGCAATTATTGCTCTTCTGGGTACTTCTTTGGCCCTTAAAAATGGTCAGTTATT-------TAT--------------------CCTACTTGAAACTTG--------------ACA-----------AAAA-TATTAATAAATTTA-T--------------------T--T--------ATTTAAAATCAATAGAAATCTGCGGGTTACCCCATTCCCGAAACGGTGAC------------TTAATCTCCTGTGAAGC-CTACATT	Size	Hit Count	Total Norm	Total
No Reads

dp5

A-------------------------------------------------------------------------------------------------------------------------TTATGAAGTTCTTTCTGCTGCTGGCTGTGCTCGCTGTCTTGGTGGCCAATTCTTTGGCTCTGAAAAATGGTGGGTGATCA-----GCAGAG------ATC-------------------------T--------CT---------------------AG-------ACT-CAAA--AA------CTTA--T-TCATT--------CTTTGATTTCCACAGAAGTTTGTGGCCTTGAGCATTCCCGAAATGGGGAC---------GGACGCATTTCCTGTGAGGC-TTACATC	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
............................................................................................................................................................................................................................................................................................................................................................................CCGAAATGGGGAC---------GGACGC......................	19	1	2.00	2	0	0	0	0	0	0	0	0	0	2
....................................................................................................................................................GTGCTCGCTGTCTTGGTG........................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................CCAATTCTTTGGCTCTGAAA...................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................AATGGTGGGTGATCA-----GCAGAG------T..................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................GTGGGTGATCA-----GCAGAG------ATC-------------------------.......................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................CCCGAAATGGGGAC---------GGACGCATTTCCTG..............	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0

droPer2

A-------------------------------------------------------------------------------------------------------------------------TTATGAAGTTCTTTCTGCTGCTGGCTGTGCTCGCTGTCTTGGTGGCCAATTCTTTGGCTCTGAAAAATGGTCGGTACTCA-----GCAGAG------TTC-------------------------T--------CT---------------------AG-------ACT-CAAA--AA------CTCA--T-TCATT--------CTTTGATTTCCACAGAAGTCTGTGGCCTTGAGCATTCCCGCAATGGGGAC---------GGACGCATTTCCTGTGAGGC-TTACATC	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
.................................................................................................................................GTTCTTTCTGCTGCTGGCTGT........................................................................................................................................................................................................................................................................	21	1	4.00	4	4	0	0	0	0	0
.................................................................................................................................GTTCTTTCTGCTGCTGGCTGG........................................................................................................................................................................................................................................................................	21	1	2.00	2	2	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................GAAGTCTGTGGCCTTGAGCATTCCCG...............................................	26	1	1.00	1	1	0	0	0	0	0
......................................................................................................................................TTCTGCTGCTGGCTGTGCT.....................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
............................................................................................................................ATGAAGTTCTTTCTGCTGCTGGCTGG........................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
............................................................................................................................ATGAAGTTCTTTCTGCTGCTGGCTGC........................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
....................................................................................................................................CTTTCTGCTGCTGGCTGTGCT.....................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
...............................................................................................................................AAGTTCTTTCTGCTGCTGGCTGG........................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
...............................................................................................................................AAGTTCTTTCTGCTGCTGGCTGT........................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0

droWil2

TGCT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGC-TTCTTTT	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
No Reads

droVir3

T---------------------------------------------AGCTACAAGTTCTCA---------A---------------------------------------------ATCTTAGAATGAAGCTGATTTTATATTTTTTGGTTCTCGCTGCATACGTGGGCAGTTCCTTAGCCCTTAAAAATGGTTAGTAATAG-----ACACTGGAACAAACTTCAAGTTAACT----------------------------------------C----A---------------GCT--T----------TTA-TCATA--------ATATTATCAACATAGAGGTGTGCGGATTGCCACATAATTCAGAAAGTAAC---------GG------CGGGTGCCTGGC-TCACTTC	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
.......................................................................................................................................................CTCGCTGCATACGTGGGCA....................................................................................................................................................................................................................................................	19	2	3.50	7	0	0	0	0	0	1	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................TTTTGGTTCTCGCTGCATACGTGGGCA....................................................................................................................................................................................................................................................	27	2	3.00	6	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................GTTCCTTAGCCCTTAAAAATGA..............................................................................................................................................................................................................................	22	2	1.50	3	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................AGAATGAAGCTGATTTTATAT................................................................................................................................................................................................................................................................................	21	3	1.33	4	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................CTCGCTGCATACGTGGGC.....................................................................................................................................................................................................................................................	18	2	1.00	2	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................ATAATTCAGAAAGTAAC---------GG------CG..................	21	2	1.00	2	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................CCTTAGCCCTTAAAAATGAG.............................................................................................................................................................................................................................	20	3	1.00	3	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................CTTAGAATGAAGCTGATTTT....................................................................................................................................................................................................................................................................................	20	3	1.00	3	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................GTGGGCAGTTCCTTAGCC.........................................................................................................................................................................................................................................	18	2	1.00	2	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................GTTCCTTAGCCCTTAAAAATG...............................................................................................................................................................................................................................	21	2	1.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................GAGGTGTGCGGATTGCCA.......................................................	18	3	1.00	3	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................TCAGAAAGTAAC---------GG------CGGGTGC.............	21	2	1.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................TGCCACATAATTCAGAAAGTAAC---------GG------CG..................	27	2	1.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................TTCTCGCTGCATACGTGGGCA....................................................................................................................................................................................................................................................	21	2	1.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................TCTCA---------A---------------------------------------------ATCTTAGAATGAAGCT..........................................................................................................................................................................................................................................................................................	22	4	0.75	3	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................GATTTTATATTTTTTGGTT.......................................................................................................................................................................................................................................................................	19	3	0.67	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................CAGAAAGTAAC---------GG------CGGGG...............	18	3	0.67	2	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................CTTAGAATGAAGCTGATTTTATAT................................................................................................................................................................................................................................................................................	24	3	0.67	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................ATGAAGCTGATTTTATATTTTTTG..........................................................................................................................................................................................................................................................................	24	3	0.67	2	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................CTTAGAATGAAGCTGATT......................................................................................................................................................................................................................................................................................	18	3	0.67	2	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................ATATTTTTTGGTTCTCGCT.................................................................................................................................................................................................................................................................	19	2	0.50	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................ATACGTGGGCAGTTCCTTAGC..........................................................................................................................................................................................................................................	21	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................TGCATACGTGGGCAGTTCCTT.............................................................................................................................................................................................................................................	21	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................AAC---------GG------CGGGTGCCTGGC-T......	18	2	0.50	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................ATACGTGGGCAGTTCCTTA............................................................................................................................................................................................................................................	19	2	0.50	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................TGAAGCTGATTTTATATTTTTTGGTT.......................................................................................................................................................................................................................................................................	26	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................TCCTTAGCCCTTAAAAATG...............................................................................................................................................................................................................................	19	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................TTTATATTTTTTGGTTCTCGCT.................................................................................................................................................................................................................................................................	22	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................TGCCACATAATTCAGAAAGT........................................	20	2	0.50	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................CGCTGCATACGTGGGCAGT..................................................................................................................................................................................................................................................	19	2	0.50	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................GTTCCTTAGCCCTTAAAAAT................................................................................................................................................................................................................................	20	2	0.50	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................AATGGTTAGTAATAG-----ACACTG.........................................................................................................................................................................................................	21	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................CTCGCTGCATACGTGGGCAGT..................................................................................................................................................................................................................................................	21	2	0.50	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................GTTCTCGCTGCATACGTGGGCA....................................................................................................................................................................................................................................................	22	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................CGCTGCATACGTGGGCAGTTC................................................................................................................................................................................................................................................	21	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................ATACGTGGGCAGTTCCTTAGCC.........................................................................................................................................................................................................................................	22	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................ATAATTCAGAAAGTAAC---------GG------CGGG................	23	2	0.50	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................GCGGATTGCCACATAATTCAGAAAGT........................................	26	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................ATTCAGAAAGTAAC---------GG------CGGGTGC.............	23	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................GGTTCTCGCTGCATACGTGGGCA....................................................................................................................................................................................................................................................	23	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................ACATAATTCAGAAAGTAAC---------GG------....................	21	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................ACGTGGGCAGTTCCTTAGC..........................................................................................................................................................................................................................................	19	2	0.50	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................TCTCA---------A---------------------------------------------ATCTTAGAATGAAGC...........................................................................................................................................................................................................................................................................................	21	4	0.50	2	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................ATTTTATATTTTTTGGTTCTCG...................................................................................................................................................................................................................................................................	22	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................ATAATTCAGAAAGTAAC---------GG------....................	19	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................CAGTTCCTTAGCCCTTAAAAAT................................................................................................................................................................................................................................	22	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................TCCTTAGCCCTTAAAAAT................................................................................................................................................................................................................................	18	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................CATAATTCAGAAAGTAAC---------GG------CGGGG...............	25	2	0.50	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................GCTGCATACGTGGGCAGTT.................................................................................................................................................................................................................................................	19	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................CTCA---------A---------------------------------------------ATCTTAGAATGAAGC...........................................................................................................................................................................................................................................................................................	20	4	0.50	2	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................CACATAATTCAGAAAGTAAC---------GG------....................	22	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................CAGTTCCTTAGCCCTTAA....................................................................................................................................................................................................................................	18	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................TTCCTTAGCCCTTAAAAATGAG.............................................................................................................................................................................................................................	22	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................TTGGTTCTCGCTGCATACGTGGGCA....................................................................................................................................................................................................................................................	25	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................ATATTTTTTGGTTCTCGCTGC...............................................................................................................................................................................................................................................................	21	2	0.50	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................TTTGGTTCTCGCTGCATACGTG........................................................................................................................................................................................................................................................	22	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................ATGAAGCTGATTTTATAT................................................................................................................................................................................................................................................................................	18	3	0.33	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................ATGAAGCTGATTTTATATT...............................................................................................................................................................................................................................................................................	19	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................TATTTTTTGGTTCTCGCTGC...............................................................................................................................................................................................................................................................	20	3	0.33	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................ATCTTAGAATGAAGCTGAT.......................................................................................................................................................................................................................................................................................	19	3	0.33	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................TTCTCA---------A---------------------------------------------ATCTTAGAATGAAGCTGAT.......................................................................................................................................................................................................................................................................................	26	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................A---------------------------------------------ATCTTAGAATGAAGCTGATT......................................................................................................................................................................................................................................................................................	21	3	0.33	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................TTTTGGTTCTCGCTGCATA............................................................................................................................................................................................................................................................	19	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................CTTAGAATGAAGCTGATTTTA...................................................................................................................................................................................................................................................................................	21	3	0.33	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................TCTCA---------A---------------------------------------------ATCTTAGAATGAAGCTG.........................................................................................................................................................................................................................................................................................	23	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................TTTTTGGTTCTCGCTGCATACGT.........................................................................................................................................................................................................................................................	23	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................GAATGAAGCTGATTTTAT..................................................................................................................................................................................................................................................................................	18	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................TGAAGCTGATTTTATATTTTT............................................................................................................................................................................................................................................................................	21	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................ATGAAGCTGATTTTATATTTTT............................................................................................................................................................................................................................................................................	22	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
T---------------------------------------------AGCTACAAGTTCTCA---------A---------------------------------------------AT........................................................................................................................................................................................................................................................................................................	19	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................A---------------------------------------------ATCTTAGAATGAAGCTGAT.......................................................................................................................................................................................................................................................................................	20	3	0.33	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................AATGAAGCTGATTTTATATTT..............................................................................................................................................................................................................................................................................	21	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................TCA---------A---------------------------------------------ATCTTAGAATGAAGCTGAT.......................................................................................................................................................................................................................................................................................	23	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................AGAATGAAGCTGATTTTATATT...............................................................................................................................................................................................................................................................................	22	3	0.33	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................CA---------A---------------------------------------------ATCTTAGAATGAAGCTGAT.......................................................................................................................................................................................................................................................................................	22	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................TTATCAACATAGAGGTGTGCG...............................................................	21	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................TTTTGGTTCTCGCTGCATACG..........................................................................................................................................................................................................................................................	21	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................ATCTTAGAATGAAGCTGATTTT....................................................................................................................................................................................................................................................................................	22	3	0.33	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................A---------A---------------------------------------------ATCTTAGAATGAAGCT..........................................................................................................................................................................................................................................................................................	18	4	0.25	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................TCTCA---------A---------------------------------------------ATCTTAGAATGAA.............................................................................................................................................................................................................................................................................................	19	4	0.25	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................CAAGTTCTCA---------A---------------------------------------------ATCTTAGAATGAAGC...........................................................................................................................................................................................................................................................................................	26	4	0.25	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................TCA---------A---------------------------------------------ATCTTAGAATGAAGC...........................................................................................................................................................................................................................................................................................	19	4	0.25	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................CTCA---------A---------------------------------------------ATCTTAGAATGAAGCT..........................................................................................................................................................................................................................................................................................	21	4	0.25	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................ACAAGTTCTCA---------A---------------------------------------------ATCTTAGA..................................................................................................................................................................................................................................................................................................	20	4	0.25	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................TCTCA---------A---------------------------------------------ATCTTAGAATGA..............................................................................................................................................................................................................................................................................................	18	4	0.25	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................AGTTCTCA---------A---------------------------------------------ATCTTAGAATGAAGCT..........................................................................................................................................................................................................................................................................................	25	4	0.25	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................CTTAGCCCTTAAAAATGAG.............................................................................................................................................................................................................................	19	6	0.17	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

TTCAGC----TTTAAGTTGAGTT------------AGTTAAT---CAACAGAAGCTCTACG---------AAAA------------------------------------------TATACAAAATGAAACTTGTAGCAGTACTTTGCGTATTCATCGCTGTCTTCGGCGCTTCCATCGCTCTCAAGAATCGTAAGTCT-----AAATACC----------------------TGAT---------TCTA-AATGTCT---------------------CA-------TTT-CTGC--AAGC-AAC----TATCTCTTT--------GTGCTCTGTGCTCAGACATTTGCGGTCTACCGCCAGCCGGTGATGGCATC---------GGCTTGATGAGGTGCTTTGCTATACTTC	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
..................................................................................................................................................................CTTCGGCGCTTCCATCGCTCTCAA....................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................GGCATC---------GGCTTGATGAGGTG..............	20	1	1.00	1	1	0	0	0	0	0

droGri2

A----------------------------------------------------------------------------------------------------------------------------TGAAGTCGTTTTTCATTTTTATAGTAGTCATGGCAATTGTTATCAGATCTGTTGCACAGAAAAATCGTGAGTATTAT-----TTGTTGC-----------------AATACTCTTAAAATG--------------AAT-----------TCAC-AA------------------A---------------------------TTATTTATTATAAAGCGAAATGCCGTTTGCCACATTCGAAGAATGGAATTTTAAATGGCCCAAATAACCAATGCTTGGA-TAACATT	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

dsi_16146

2l:3546984-3547133 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-24.5	-24.5	-24.4