ID:

dsi_1613

 Coordinate:

3r:10595824-10595882 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-5.3 -5.3 -4.9

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

GTTCCTCCAAGGAGGGCCACAGTGCCTCCTCCACCAACGGTGCTATGACGGTAAGTCCCAATTGGTCCTGATCAAAACGATTACTAATTTTTTCCTCTTGATCACACAGGTGGCCATAGCAGCGAATCGACTGAGCTGCGCGGAATCGGACGATGAGCT
**************************************************..................(((((((...((............))...))))))).....************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 M053
female body
 M023
head
 SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
...............................................................................................................................CGACTGAGCTGCGCGGAATC............ 20 0 1 4.00 4 3 1 0 0 0 0
.......CAAGGAGGGCCACAGTGCCTCCTCCACC............................................................................................................................ 28 0 1 1.00 1 0 1 0 0 0 0
........................................................................................TTTTTCCTCTTGATCACACAG.................................................. 21 0 1 1.00 1 0 0 1 0 0 0
............................................................................................................GGTGGCCATAGCAGCGAAT................................ 19 0 1 1.00 1 0 1 0 0 0 0
...............................................................................................TCTTGATCATTCAGGTGG.............................................. 18 2 1 1.00 1 0 0 0 0 1 0
.......................................................................................................................................CTGCGCGGAATCGGACGATGAGC. 23 0 1 1.00 1 0 0 0 1 0 0
........................................................................................................................................TGCGCGGAATCGGACGATGAGCT 23 0 1 1.00 1 1 0 0 0 0 0
.....................GTGCCTCCTCCACCAACGGTGCT................................................................................................................... 23 0 1 1.00 1 0 1 0 0 0 0
............................................................................................................................................CGGAGTCAGACGATGAGC. 18 2 6 0.17 1 1 0 0 0 0 0
...............................CACCAACGGTGCTGTA................................................................................................................ 16 2 20 0.05 1 0 0 0 0 0 1

Anti-sense strand reads

CAAGGAGGTTCCTCCCGGTGTCACGGAGGAGGTGGTTGCCACGATACTGCCATTCAGGGTTAACCAGGACTAGTTTTGCTAATGATTAAAAAAGGAGAACTAGTGTGTCCACCGGTATCGTCGCTTAGCTGACTCGACGCGCCTTAGCCTGCTACTCGA
**************************************************..................(((((((...((............))...))))))).....************************************************** 		Read size # Mismatch Hit Count Total Norm Total O002
Head
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR902008
ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR902009
testis
 M053
female body
 SRR553488
RT_0-2 hours eggs
 GSM343915
embryo
 M023
head
 SRR553487
NRT_0-2 hours eggs
 M024
male body
....................................................................................ATTAGTAATGGAGAACTAG........................................................ 19 3 20 3.95 79 63 3 0 0 0 0 12 0 0 0 0 1
.......................................................................................TAATAAGGAGAACTAGTGTGT................................................... 21 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
...........................................................................................AAGGAGAACTAGTGTGTCCAG............................................... 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
....................................................................................AATATAAAAGGAGAACTAGTGTGT................................................... 24 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
......................................................................................TAATAAAGGAGAACTAGTGTGT................................................... 22 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
.......................................................................................TAAAAAGGAGAACTAGTGTGT................................................... 21 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
.......................................................................................TAATAAGGAGAACTAGTGTGG................................................... 21 3 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0
........................................ACTATTCTGCCATTCAGG..................................................................................................... 18 2 3 0.33 1 0 0 0 0 0 0 0 1 0 0 0 0
.............................................................................................GGAGAACTAGTGTGT................................................... 15 0 9 0.33 3 0 3 0 0 0 0 0 0 0 0 0 0
.....................................................................................TTAATAATGGAGAACTAG........................................................ 18 2 4 0.25 1 0 0 0 0 0 0 1 0 0 0 0 0
............................................................................................AGGAGAACTAGTGTGT................................................... 16 0 9 0.22 2 0 1 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................TCGAGGCGCCTTAGCTTG........ 18 2 6 0.17 1 0 0 0 0 0 0 0 0 1 0 0 0
.................................................................................................................GGTATTGTCGCTTAG............................... 15 1 7 0.14 1 0 0 0 0 0 0 0 1 0 0 0 0
................................................................CAGGCCTAGTTTTGCT............................................................................... 16 1 7 0.14 1 0 0 0 0 0 0 0 0 0 0 1 0
.....................................................................................TAAAAAAAGGAGAACTAGTGTGT................................................... 23 1 9 0.11 1 0 0 0 1 0 0 0 0 0 0 0 0
.........................................................................................AAAAGGAGAACTAGTGTGT................................................... 19 0 9 0.11 1 0 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................CCGGAATCGTCAATTAGCT............................. 19 3 10 0.10 1 0 0 0 0 0 0 0 0 0 1 0 0
...........................................................................TCGCTAATGCTTAAGAAAG................................................................. 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0

Generated: 04/24/2015 at 10:45 AM