ID:

dsi_16091

 Coordinate:

3r:17395166-17395353 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-5.7 -5.6 -5.6

Flybase annnotation

CDS [3r_17395356_17395889_-]; three_prime_UTR [3r_17395280_17395355_-]; exon [3r_17395280_17395889_-]

No Repeatable elements found

Sense Strand Reads

############################################################################################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------
AAAGTGGTCACCGCTGGCTGGGATGGCCAGATAAAATACTGGGACTAAAGGTCCGCACAAAATAACCTAGATAGATGTAAGCCAAACTGATGTGTAAATTGATTGATTATATTGCATACCCATTATGTTCGAATTGAGCTCATATAATTCATGTGGGATATATTGAATTCTTAAGTTATTTATCCGTCCGGTTCCATAATATTCCCTGGACAAGCCTGTGCCTTTTATTTACCTTCAGTTGTGATAAGAGTCCGCATGCGCAGTGCATGTGAAATGGCAAACAACTCG
************************************************************************************......((((....((((((((.((((.((......)).)))).)).))))))...))))************************************************************************************************************************************************ 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 M053
female body
 SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 M024
male body		 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
..........................................................................................................................................................................................................................................TCAGTTGTGATAAGAGTC.................................... 18 0 1 2.00 2 2 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................GACCGCATGCGCAGTGGA..................... 18 2 4 1.75 7 0 0 0 5 0 2 0
........................................................................................................................CATTATGTTCGAATTGAGCTCATA................................................................................................................................................ 24 0 1 1.00 1 0 1 0 0 0 0 0
....................................................................................AACTGATGTGTAAATTGATTGATTATA................................................................................................................................................................................. 27 0 1 1.00 1 0 0 1 0 0 0 0
.............................................................................................................................................................................................................................................GTTGGGATAAGACTCCGCATT.............................. 21 3 1 1.00 1 0 0 0 0 1 0 0
........................................................................AGATGTAAGCCAAACTGATGT................................................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0
..............................................................................................................................................................................................................................................................CATGCGTAGTGCATGTG................. 17 1 3 0.33 1 0 0 0 0 0 1 0
...................................................................................................................ATACCCATTATGTTCGAAAAAA....................................................................................................................................................... 22 3 3 0.33 1 0 0 1 0 0 0 0
...................................................................................................................ATACCCATTATGTTCGAAAAA........................................................................................................................................................ 21 3 5 0.20 1 0 0 1 0 0 0 0
................................................AGGTCCGAACAAACTTACC............................................................................................................................................................................................................................. 19 3 6 0.17 1 1 0 0 0 0 0 0
................................................................................GCAAAACTGATCCGTAAATT............................................................................................................................................................................................ 20 3 11 0.09 1 0 0 1 0 0 0 0
.....................................................................................................................ACCCATTATGTTCGAAAA......................................................................................................................................................... 18 2 16 0.06 1 0 0 0 0 0 0 1
....................................TACGGGGAATAAAGGTTCG......................................................................................................................................................................................................................................... 19 3 16 0.06 1 0 1 0 0 0 0 0
.....................................ACCGGTACTAATGGTCCG......................................................................................................................................................................................................................................... 18 3 19 0.05 1 0 0 0 0 0 1 0
...............................................................................................AAATTGATTTATTATAT................................................................................................................................................................................ 17 1 20 0.05 1 0 0 0 1 0 0 0

Anti-sense strand reads

TTTCACCAGTGGCGACCGACCCTACCGGTCTATTTTATGACCCTGATTTCCAGGCGTGTTTTATTGGATCTATCTACATTCGGTTTGACTACACATTTAACTAACTAATATAACGTATGGGTAATACAAGCTTAACTCGAGTATATTAAGTACACCCTATATAACTTAAGAATTCAATAAATAGGCAGGCCAAGGTATTATAAGGGACCTGTTCGGACACGGAAAATAAATGGAAGTCAACACTATTCTCAGGCGTACGCGTCACGTACACTTTACCGTTTGTTGAGC
************************************************************************************************************************************************......((((....((((((((.((((.((......)).)))).)).))))))...))))************************************************************************************ 		Read size # Mismatch Hit Count Total Norm Total M023
head
 SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
......................................................................................................................................................................................GGGCAGGCCAAGGTATTA........................................................................................ 18 1 1 1.00 1 1 0 0 0 0
.....................................................................................................................TGGGTAATACAAGCTTAACTCGAGTATA............................................................................................................................................... 28 0 1 1.00 1 0 0 1 0 0
....................................................................................................................................................................................................................................................................GTCACGTACACTTTACCGTTT....... 21 0 1 1.00 1 1 0 0 0 0
........................................CCCTGATTTCCAAGC......................................................................................................................................................................................................................................... 15 1 2 1.00 2 0 2 0 0 0
...............................................................................................................................................................................................................................................ACACTGTTCTCAGGTGTAC.............................. 19 2 1 1.00 1 1 0 0 0 0
.............................................................................AGTCGGTTTGACTAGACA................................................................................................................................................................................................. 18 2 3 0.33 1 0 0 0 1 0
.............................................................................................................................ACAAGATCAACTCGAGTAGA............................................................................................................................................... 20 3 8 0.25 2 0 1 0 0 1
.......................................TCCCTGATTTCCAAGC......................................................................................................................................................................................................................................... 16 2 20 0.15 3 0 3 0 0 0
.............................................................................................................................ACAAGAGTAACTCGAGTAGA............................................................................................................................................... 20 3 14 0.07 1 0 0 1 0 0
.................................................................................................................................................................TAGCTTAAGAATTCAAT.............................................................................................................. 17 1 20 0.05 1 0 0 0 0 1
...............................................................................................................................AAGAGTAACTCGAGTAT................................................................................................................................................ 17 2 20 0.05 1 0 0 0 0 1

Generated: 04/23/2015 at 07:02 PM