ID:

dsi_16052

 Coordinate:

3r:4299249-4299398 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-19.2 -18.7 -18.7

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

CTTTACTTTACAGCGCGCGGCGGCGCATCAGCAACAGTTGGCTGTGCAAAGTAAGTACGAAATAGAGTTTGCAATTTATTCCAGAATACTTTTAGAACAGCAAGTACCAGGTAGAAAACATAGAAAATACCCATTTACAGACTTAATTTAAGCGTCCACAACAGCACGACTACAAAGTCAAATTAACCTTGACTTTGAAAACTGCGCAAAGCCGAAAAGAAACCGAAAACACAAAGCGAAAGCAAAAAAA
**************************************************......(((((((.(((((((...............(((((..........)))))...((((..............))))......))))))).))))...))).................(((((((((.......)))))))))...************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 M053
female body
 M025
embryo
 GSM343915
embryo
 SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 M023
head
................................AACAGTTGGCTGTGCAAAGTGCT................................................................................................................................................................................................... 23 3 1 4.00 4 3 1 0 0 0 0 0 0 0
........................GCATCAGCAACAGTTGGCTGT............................................................................................................................................................................................................. 21 0 1 2.00 2 0 1 1 0 0 0 0 0 0
............................................................................................TAGAACAGCAAGTAGCACGTCG........................................................................................................................................ 22 3 1 1.00 1 0 0 0 1 0 0 0 0 0
..................GGCGGCGCATCAGCAACAGTTGGCT............................................................................................................................................................................................................... 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0
...............................CAACAGTTGGCTGTGCAAAGTGCT................................................................................................................................................................................................... 24 3 1 1.00 1 1 0 0 0 0 0 0 0 0
.................................ACAGTTGGCTGTGCAAAGTGCT................................................................................................................................................................................................... 22 3 2 1.00 2 0 0 2 0 0 0 0 0 0
.......................................................................................................GTACCAGGTAGAAAACATAGAA............................................................................................................................. 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0
..........................ATCAGCAACAGTTGGCTGTGCA.......................................................................................................................................................................................................... 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.....................................................................................................TAGTACCAGGTAGAAAA.................................................................................................................................... 17 1 2 0.50 1 0 0 0 0 1 0 0 0 0
......................................................................................................................................................................................................AAACTTCGAAAAGCTGAAAAGA.............................. 22 3 4 0.25 1 0 0 0 0 0 1 0 0 0
................................................................................................................................................................................................................AAGGCGAAAAGAAGCCGAAA...................... 20 2 6 0.17 1 0 0 0 0 0 0 0 1 0
................................................................................................................................................................................................................AAGCCGAAAAGAACCC.......................... 16 1 7 0.14 1 0 0 0 0 0 0 1 0 0
...........................................................................................................CAAGTAGGAAACATAGACAA........................................................................................................................... 20 3 15 0.13 2 2 0 0 0 0 0 0 0 0
..................................................................GTCAGCAATTTATTCCAGCA.................................................................................................................................................................... 20 3 16 0.06 1 0 0 0 0 0 0 0 0 1
..........CGGCGCGCGGCGGCG................................................................................................................................................................................................................................. 15 1 17 0.06 1 0 0 0 0 0 0 1 0 0
............................................................................................................AGGTAGGAACCATAGAAAC........................................................................................................................... 19 3 20 0.05 1 1 0 0 0 0 0 0 0 0

Anti-sense strand reads

GAAATGAAATGTCGCGCGCCGCCGCGTAGTCGTTGTCAACCGACACGTTTCATTCATGCTTTATCTCAAACGTTAAATAAGGTCTTATGAAAATCTTGTCGTTCATGGTCCATCTTTTGTATCTTTTATGGGTAAATGTCTGAATTAAATTCGCAGGTGTTGTCGTGCTGATGTTTCAGTTTAATTGGAACTGAAACTTTTGACGCGTTTCGGCTTTTCTTTGGCTTTTGTGTTTCGCTTTCGTTTTTTT
**************************************************......(((((((.(((((((...............(((((..........)))))...((((..............))))......))))))).))))...))).................(((((((((.......)))))))))...************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 M024
male body		 M023
head
 SRR553487
NRT_0-2 hours eggs
 M025
embryo
 SRR553485
Chicharo_3 day-old ovaries
 SRR902009
testis
..................................................................................................................................................................................GTTGAATTGGTACTGAAAC..................................................... 19 2 2 0.50 1 0 1 0 0 0 0 0 0 0
........................................................................................................AAGGTCCATCTTCTGTAT................................................................................................................................ 18 2 3 0.33 1 1 0 0 0 0 0 0 0 0
.....................................................................................................................................AAATGTCTGAAATAAA..................................................................................................... 16 1 20 0.30 6 6 0 0 0 0 0 0 0 0
...............................................................................................................................................................................TCAGTCTAATGGGAACAG......................................................... 18 3 20 0.25 5 0 0 0 3 2 0 0 0 0
....................................................................................................................................................................................TGAATTGGTACTGAAAC..................................................... 17 2 20 0.25 5 0 5 0 0 0 0 0 0 0
...............................................................................................................................................................TTCTCGTGCTGATGT............................................................................ 15 1 6 0.17 1 1 0 0 0 0 0 0 0 0
.............................................................................TAAGGTCTTAGGAAAATGTAG........................................................................................................................................................ 21 3 6 0.17 1 0 0 1 0 0 0 0 0 0
.....................................................................................................................................AAATGTCTGAAATAA...................................................................................................... 15 1 20 0.10 2 2 0 0 0 0 0 0 0 0
...............................GTTGTCAACCGACTCGAT......................................................................................................................................................................................................... 18 2 10 0.10 1 0 1 0 0 0 0 0 0 0
.................................................................................................................................GCGTAAATGTCTGAATTT....................................................................................................... 18 2 11 0.09 1 0 1 0 0 0 0 0 0 0
.........................................................................................................AGGTCCATCTTCTGTAT................................................................................................................................ 17 2 12 0.08 1 1 0 0 0 0 0 0 0 0
.................................................................TTAAATGTTAATTAAGGTCT..................................................................................................................................................................... 20 3 20 0.05 1 0 0 0 0 0 1 0 0 0
............................................................................................................................................................................................AACTGAAGCTTTTGA............................................... 15 1 20 0.05 1 0 0 0 0 0 1 0 0 0
..................................................................................................................................................................TCGTGCGGATGTTTCAT....................................................................... 17 2 20 0.05 1 0 0 0 0 0 0 0 0 1
..................................................................................................................................GGCAAATGTCTGAATTTTA..................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 1 0 0
..................................................................................................................................GGTAAATTTCTGAAT......................................................................................................... 15 1 20 0.05 1 0 0 0 0 0 0 0 1 0

Generated: 04/24/2015 at 12:48 AM