dsi_16028

Name	Class	Family	Strand
GA-rich	Low_complexity	Low_complexity	+

AACAACTGCCAGCGGAACGGAAAGAAGAGGAGCTCTGTCAGAAGCAAGGGGTAAAGGATAAGAATAGTAAGAAGAAGAAGAAGCTAGCAGGCGAGGAGGATACGAAGAAAAAGCAAGAGGAAAGGGAAAATAGCAAGAAGAAGCAGCAGCTTCAGCAGCAGCAAAGGGCAAATAACAAGAAGAAGCAGCGACATCAGCCTCCCCGTGTACAGAGGAAAAAAAACCTTGTCTTATTTTTAGATTATTTACGCCAGTTTTGTGCCGTCGAAAGCGAAATTGTCGCTGTCGAA ************************************************...((((((((((.((((..............))))(((((.((((..(((.((...................................(((((....))))).((....)).....((...............))..))..)))..)))).)).)))...((((........)))).))))))))))..************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M023 head	SRR618934 dsim w501 ovaries	O002 Head	SRR553486 Makindu_3 day-old ovaries	GSM343915 embryo	M024 male body
.....................AAGAAGAGGAGCTCTGTCAAG........................................................................................................................................................................................................................................................	21	2	1	1.00	1	1	0	0	0	0	0
......................................................................................................................................................................................................................................................TACGCCAGTTTTGTGCCGTCGAAAGCGA................	28	0	1	1.00	1	0	0	0	1	0	0
.........................AGAGGAGCTCTGTCAGAAGCAAGGGG...............................................................................................................................................................................................................................................	26	0	1	1.00	1	1	0	0	0	0	0
..........AGCGGAACGGAAAGAAGA......................................................................................................................................................................................................................................................................	18	0	1	1.00	1	0	0	1	0	0	0
.................................................................................................................................................................................AGAAGAAGCAGCGACA.................................................................................................	16	0	1	1.00	1	0	1	0	0	0	0
..............................................................................................................................................................................................................................................................................GTGAAATTGTCGCTGACG..	18	2	7	0.14	1	0	0	0	0	0	1
........................................................................................................................................................................................................................AAAGAGACCTTGTCTTACTT......................................................	20	3	7	0.14	1	0	0	0	0	1	0
........................................................................................................................................................................................................GCCCGTGTACAGAGAAAA........................................................................	18	2	8	0.13	1	0	0	0	0	1	0
.............................................................................................................................................................................................................................................................GTTGTGTACCGTCTAAAGC..................	19	3	15	0.07	1	0	0	0	0	0	1
....................................................................................................................................................................................................................................................TTTACGCCTGTTTTG...............................	15	1	20	0.05	1	0	1	0	0	0	0

TTGTTGACGGTCGCCTTGCCTTTCTTCTCCTCGAGACAGTCTTCGTTCCCCATTTCCTATTCTTATCATTCTTCTTCTTCTTCGATCGTCCGCTCCTCCTATGCTTCTTTTTCGTTCTCCTTTCCCTTTTATCGTTCTTCTTCGTCGTCGAAGTCGTCGTCGTTTCCCGTTTATTGTTCTTCTTCGTCGCTGTAGTCGGAGGGGCACATGTCTCCTTTTTTTTGGAACAGAATAAAAATCTAATAAATGCGGTCAAAACACGGCAGCTTTCGCTTTAACAGCGACAGCTT ************************************************...((((((((((.((((..............))))(((((.((((..(((.((...................................(((((....))))).((....)).....((...............))..))..)))..)))).)).)))...((((........)))).))))))))))..************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553487 NRT_0-2 hours eggs	M024 male body	SRR618934 dsim w501 ovaries
...............................................................................................................................................GTCGTCAAAGTCTTCGTCGTT..............................................................................................................................	21	2	8	0.13	1	1	0	0
................................................................................................................................................................................................................AGTCTCCTTTATTTTCGAAC..............................................................	20	3	13	0.08	1	0	1	0
............................................................................................................................................................................................................................TTTCGAACAGAATAA.......................................................	15	1	20	0.05	1	0	0	1

Species	Coordinate	ID	Alignment
droSim2	3l:20052799-20053088 +	dsi_16028	AACAA---C-TGCCAGCGGAACGGAAAGAA--GAGG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCTCTGTCAGAAGCAAGGGGTAAAGGATAAGAATAGTAAGAAGAAGAAGAAGCTA-GCAGGCGAGGAG---GATACGAAGAA-----AA---AG---CAAGAGGAAAGGGAAAATAGCAAGAAGA---AGCAGCAGCTTCAGCAG-CAGCAA---AG---GGCAAATAACAA--GAAGAAGCAGCGACATCAGCCTCCCCG------------------------------------------------------------TGTACAGAGGAAAAA---AAACCTTGTCTTATTTTTAGATTATTTACGCCAGTTTTGTGCCGTCGAAAGCGAAATTGTCGCTGTCGAA---------------------------------------------------
droSec2	scaffold_11:381594-381883 +		AACAA---C-TGCAGGCGGAACGGAGAGAA--GAGG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCTCTGTCAGAAGCAAGGGGTAAAGGATAAGAATAGTAAGAAGAAGAAGAAGCTA-GCAGGCGAGGAG---GATACGAAGAA-----AA---AG---CAAGAGGAAAGGGAAAATAGCAAGAAGA---AGCAGCAGCTTCAGCAG-CAGCAA---AG---GGCAAATAACAA--GAAGAAGCAGCGACATCAGCCTCCCCG------------------------------------------------------------TGTACAGAGGAAAAA---AAACCTCGTCTTATTTTTAGATTATTTACGCCAGTTTGGTGCCGTCGAAAGCGAAATTGTCGCTGTCGAA---------------------------------------------------
dm3	chr3L:20490917-20491206 +		AACAA---C-TGCACGCGGAACGGAAAGAG--GAGG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCTCTGTCACAAGCAAGGGGTAAAGGATAAGAGTAGTAAGAAGAAGGAGAATCTA-GCAGGCGAGGAG---GATAAGAAGAA-----AA---AG---CAAGAGGAAAGGGAACATAGCAAGAAGA---AGCAGCAGCTTCAGCAG-AAGCAA---AG---GGCAAATAACAA--GAAGAAGAAGCGGCATCAGCCTCCCCG------------------------------------------------------------TGTACAGAGGAAAAA---AAACCTCGTCTTATTTTTAGATTATTTACGCCAGTTTGGTGCCGTCGAAAGCGAAATTGTCGCTGTTGAA---------------------------------------------------
droEre2	scaffold_4784:20184141-20184430 +		AACAA---C-TGCAGGCGGAAAGGGAAGAA--GAGG----AG----------------------------------------------------------------------------------------------------------------------------------------------------------AACAA---------GAAGCTCTGTCAAAAGCAAGGGGTAAAGGATAAGAAGAGTAAGAAGAA---GAAGCTA-CCAAACGAGGAG---GATAAGATTAA-----AA---AA---CAAAAGGAAAGGAAACAGAGTAAGGAGA---AGAAGC------AGCAG-CAGCAA---AG---GGCAAATAATAA--AAAAAAGAAGCGGCATCAGCATCCCCG------------------------------------------------------------TGTACAGAGGAAAAA---AAACCTTGCGTTATTTTTAGATTATTTACGGCAGCTTAGTGCCGCCGAAATCGAAATTGTCGCTGTCGAA---------------------------------------------------
droYak3	3L:20067791-20068080 -		AACAA---C-TGCAGGCGGAAAAGGAAGAA--GAGA----CG----------------------------------------------------------------------------------------------------------------------------------------------------------AACAA---------GAAGCTCTATGAAAAGCAAGGGGTAAAGGATAAGAAGAGTAAGAAGAA------GCCA-CCAGAAAAGGAG---GATAAAACGAA-----AA---AG---CAAGAGGAAAGGGAATATAACAAGAAGA---AGAAGCAGATT---CAG-CAGCAA---AG---GGCAAATAATAA--GAAGAAGCAGCGGCATCAGCATCCCCG------------------------------------------------------------TGTACATAGGAAAAA---AAACCTTGTCTTATTTTTAGATTATTTACGCCAGCTTATTGCCGTCGAAATCGAAATTGTCGCTGTCGAA---------------------------------------------------
droEug1	scf7180000409711:5499881-5500188 -		AGGAA---G-------CAGGACGAAAAGGA--GAGG--------------------------------------------------------------------------------------------------AAAAGGTGAA------AGAG------------CCGCAACAAC---A---AGAAAAAAAGAATAGCAA---------GAAGCTCTGTCAAAAGCAAGGGGTAAAGGATAAGAAGA---------AGAATCAGCAG-CGAGGGGAGAAC---GATAAGAAGAA-----GC---AG---CAACAGAAAAGGTCAAATAATAAGAAGA---AGAAG---CCACAGCAA-CAGCAA---AG---GGCCAATAATAA--GAC---------GCAGCAGCATCCCGT------------------------------------------------------------TGTACACAGCAAAAA---AAGCCTTATACTATTTTTAGATTATTTACGGCAGTGCTGTCCCGCCGAAATCGAAATTGTCGCCGTCAAA---------------------------------------------------
droBia1	scf7180000302193:5573065-5573357 -		AACAA---A-ACGGTGAAGAAGAAGAGGGG--GGAG----AA------------------------------------GAGGAG-------------------------------------------------CAAAAGGAAGA------AGAG---CAGCGACAGCCACTACAACAACA---AGTAAAAGAG---AATAA---------GAAGCTCTGCGAAAAGCAAGAGGTAAAGGATAAGAGGA---------A---GAAGCAG-CGAGGTGAGAAG---GATAA-----------------------------------------------GA---AGAAGCAGC---GGCAG-CAGCAA---AG---GGCAAATAAGAA--GA---AGAAGCAGCAGCAGCCTCCCCC------------------------------------------------------------TGTACACAGCAAAAA---AAGCCTTGTCTTATTTTTAGATCATTCTCGTGAGTGTCCCGCCAGC------GAAATTGTCGCCGCCGCC---------------------------------------------------
droTak1	scf7180000415254:176082-176353 -		AAGAG---C-AGCCAGAACAACAACAAGAA--AAAC----TG----------------------------------------------------------------------------------------------------------------------------------------------------------ATTGA---------GAAGCTCTGTCAAAGGCGAGAGGTAAAGGATAACAAGAAGAAGCAGA-------------AAGGTGAGAAG---GATAAGAGGAA-----GC---AGGACCAGCAGCAAAGGGAAAATCACAAGAAGA---AGAAGCAA---GAGCAG-CAGCAA---AG---GGCAAATAAGAA--GAA---------GCAGCAGCCTCCCCG------------------------------------------------------------TGTACACGGCAAAAA---AAGCCTTGTCTTATTTTTAGATTATTCACGCCAGTGTCCCGCCATC------GAAATTGTCACCGTCGCC---------------------------------------------------
droEle1	scf7180000491193:4826969-4827224 +		GAGAA---A-CAAAAGGACAAGAAGA--------GA--------------------------------------------------------------------------------------------------AAAAAGAAGACGGGGAGA------------------AAAAACAACAACAACG---------------AGAGCAAAATAAGCTCAGTCAAAAAGAGAGGATAAAGAAGAA------------------------------------------------------------------------ACAAAGGGCAAATAAGAAAAAGA---AGAAGCA--TT----GCAC-ACTA---AG---GGCAAATAAG--------AAGAAGCACCATCAGCATCCCCT------------------------------------------------------------CATACACAGCAAAAA-ACAAGCCGTGTCTTATTTTTAGATTATTTACGCCTGTGTACCGCCATC------GAAATTGTCGCCGTCTCC---------------------------------------------------
droRho1	scf7180000770443:3427-3688 +		AGCAA---A-GGGACAAGTAGTGGA--------------------------------------------------------------------------------------------------------------AAAACGAGAAG---AACAG---CAGAGAGTGCAACAAAAACAACATCAACG---------------AGAGCA---GGAGGTCTGTCAAAAAGAGAGAGTAAAGAAGAA-------------------------------------------------GCA-----CC---AG---C------AAAGGGCGAATAA------GA---AGAAGCA--TC----GCCC-AATA---AG---CGCAAAC--------AAGAAGAAGCACCATCAGCATCTTCT------------------------------------------------------------CATACACAGCGAAAAAACAAGCCCTGTCCTATTTTTAGATTATTTACGCCAGTGTACCGCCGTC------GAAATTGTCGCTGTCTCC---------------------------------------------------
droFic1	scf7180000454113:1839041-1839308 -		AAGAG---A-AGGAGAAAA--------------------------------------------------------------------------------------------------------------------AAAGGAAGAAG------GGCCACAGAGAGTGCCGCAAAAACAACAAAATCA------AGTTAA---AGAGCATAAAAAGCACTGTCGAAAAGAGAGGTTAAAAAA----------------------------------------------------ATA-----TC---AG---CAAGGAAAGAAGGATACAAATCGGAAAGGGGAGAAGGA---T---AAG-AAGCAA---AG---AAAAAATAATAA--GAAGAAGA---------AGGTTCCCCG------------------------------------------------------------TGTGCACAGCAAAAA---AAGCCTTGTCTTATTTTTAGACTATACACGTC---GTCCCGCCATC------GAAATTGTCGCCGTTGTC---------------------------------------------------
droKik1	scf7180000302441:3210477-3210716 +		AACAA---C-AACTGCAGCAGCACTCGAAG--GAGG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AG---------------------------------------------A------TAA-AAGGCAAAGAGGAACAAGAGAAGCT-----CG---GG---C------CAAGAGAGAATAA------GA---AGAAGC---------GCCC-AAAG---AG---GGG------CAA--GAAAAAGCAGCAGCAGCAGCATCCCCT-CGTCA--ATACCAATACCGATAC------------------AAATAAGTTACGTTACAGTGTGCGCAGCA---A---GAGCCTTGCCGTATTTTTAGATTATTTGCGACAGTGTCCCGCCATC------GAAATCGTCGCTG--------------------------------------------------------
droAna3	scaffold_13337:10848916-10849200 +		GGCGAAAATCATCTGGTGGGGCGAAAAGCGCGAGGCAGCAGG------------------------------AACTGTCAGCTGTGACGCCAGCAGCGCCAGCGACCGAGGAAGGAAAAGGTCAAGAAAACAAC------------------------------------AAAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAAC------AACAG-CAGCAG---AA---GCAAGAG-----------AAGAAGCAGAAACAGCATCA------------TACTAACACTAATACAATTACAAATACAAATACAAATAAATTAAGATACTGTGTGCGGAGCA---A---GAGCCTTGCCTTATTTTTAGATTACCTGCGACAGTGTCCCGCCATC------GAAATAGTCGCCGCCTGT---GACGA-------------------------------------------
droBip1	scf7180000396569:530191-530421 -		AGCGA---C-CGAGGAAGGAAAAGG------------------------------------------------------------------------------------------------TCAAGAAAGCAAC------------------------------------AACACCAACA---------------------------------------------GCACCAAGAG------------------------------------------------------------------------------------------TGCAGGAAGAAGA---AGAGGCA---TCAACAG-CAGC--------------------------------AGCAGCAGCATCATACCAC------------------------------------------------------------TACAACCAAGAGCAA---GAGCCTTGCCTTATTTTTAGATTACCTACGCCAGTGTCCCGCCATC------GAAATTGTCGCCGCCTGT---GACGACAGCACCGACCACGCCTACAACGGTCCGACACCTCCTCCTGCA
dp5	XR_group8:7900384-7900567 +		AGAAA---T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAG-AAGCAA---AG---GTCAAGTCAA--------CAGCAGCGGCAGCATCATCCCCATCGGCAGCATACCAATACTAATACATGCACC---------ACCAATAAATTACGGTACAGCGTACGGAGCA---A---AAGCCTTGCCTTATTTTTAGACTATCTGCGCGAGTGTCCCTCTATT------CAAATTGTCGCTGCCGGCAGTGACG--------------------------------------------
droPer2	scaffold_40:90124-90298 +		AGAAA---T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAG-AAGCAA---AG---GTCAAGTCAA--------CAGCAGCGGCAGCATCATCCCCATCGGCAGCATACCAATACTAATACATGCACC---------ACCAATAAATTACGGTACAGCGTACGGAGCA---A---GAGCCTTGCCTTATTTTTAGACTATCTGCGCGAGTGTCCCTCTATT------CAAATTGTCGCTGCCG-----------------------------------------------------
droWil2	scf2_1100000004511:10529596-10529684 -		AACAA---C-AACTACAGGAACATCAAGGA--G-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAC------CGA-AGCAAAAGGAGGAGAAAGAAAAGGA-----AA---AG---GAGAAGGAGAGAGAAAGAAA------GG---AGGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droVir3	scaffold_12963:14952731-14952944 -		AACAG---C-TGCAACAACAACAACAACTG--AGGC----AGCTCCAATTGCAAGCAAAGTAAATTTTAATCAATTGACAGCAG-------------------------------------------------CAACAGCAACAGC---AGCAG---CAAC---------------------------------------------------------------------------------------------------------CAT---AGCAACAAG---AGTAACAACAACAACAGCAGCAA---CAACAACAT--------CAGCAACAGGA---AACAACAGCAACAGCAA-CAACAACAGCA---GC--AACAACAACAAGAGCAGCAACAACAACAACATC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3	scaffold_6540:6398104-6398283 +		AACAA---C-AGAAGCAGCAGCAGTAACAC--CAGC----AA----------------------------------------------------------------------------------------------------------------------------------------------------------AACC------------------AGCAGCAGCAATAGGAGCAGCAGCAGCAGCAGCAGCAGCA---GCA-------------GCAG---CAACAGGAGCA-----GC---AG---CAAGAAGAGAAGCAACA------GAAGC---AACAGCAGCATCAGTAG-CAGCAA---CA---GGAGCAACATTA--GCAACAGCAGCAACAACAGCATC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2	scaffold_15203:5087251-5087427 +		AACAA---C-TGCAAGAGCAGCTGGCAAAG--CGGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCAAAATCAAAAGCAGGTGGTGCAACAGCAGCAGCAGCAGCAGCA---ACA---A-CAACA------------------ACA-----ACAGCAACAACAACAACAACGACAACA------ACAGC---AGCAGCAGCAGCAGCAG-CAGCAA---CTTCAGTCACAGCAG-----GAGCAGCAGCAACAACAGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

AACAA---C-TGCCAGCGGAACGGAAAGAA--GAGG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCTCTGTCAGAAGCAAGGGGTAAAGGATAAGAATAGTAAGAAGAAGAAGAAGCTA-GCAGGCGAGGAG---GATACGAAGAA-----AA---AG---CAAGAGGAAAGGGAAAATAGCAAGAAGA---AGCAGCAGCTTCAGCAG-CAGCAA---AG---GGCAAATAACAA--GAAGAAGCAGCGACATCAGCCTCCCCG------------------------------------------------------------TGTACAGAGGAAAAA---AAACCTTGTCTTATTTTTAGATTATTTACGCCAGTTTTGTGCCGTCGAAAGCGAAATTGTCGCTGTCGAA---------------------------------------------------	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
.........................AAGAA--GAGG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCTCTGTCAAG.....................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGCCAGTTTTGTGCCGTCGAAAGCGA...................................................................	28	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.............................A--GAGG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCTCTGTCAGAAGCAAGGGG............................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............AGCGGAACGGAAAGAA--GA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................A--GAAGAAGCAGCGACA...................................................................................................................................................................................................................	16	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0

droSec2

AACAA---C-TGCAGGCGGAACGGAGAGAA--GAGG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCTCTGTCAGAAGCAAGGGGTAAAGGATAAGAATAGTAAGAAGAAGAAGAAGCTA-GCAGGCGAGGAG---GATACGAAGAA-----AA---AG---CAAGAGGAAAGGGAAAATAGCAAGAAGA---AGCAGCAGCTTCAGCAG-CAGCAA---AG---GGCAAATAACAA--GAAGAAGCAGCGACATCAGCCTCCCCG------------------------------------------------------------TGTACAGAGGAAAAA---AAACCTCGTCTTATTTTTAGATTATTTACGCCAGTTTGGTGCCGTCGAAAGCGAAATTGTCGCTGTCGAA---------------------------------------------------	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
..........TGCAGGCGGAACGGAGAGAA--GAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0

dm3

AACAA---C-TGCACGCGGAACGGAAAGAG--GAGG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCTCTGTCACAAGCAAGGGGTAAAGGATAAGAGTAGTAAGAAGAAGGAGAATCTA-GCAGGCGAGGAG---GATAAGAAGAA-----AA---AG---CAAGAGGAAAGGGAACATAGCAAGAAGA---AGCAGCAGCTTCAGCAG-AAGCAA---AG---GGCAAATAACAA--GAAGAAGAAGCGGCATCAGCCTCCCCG------------------------------------------------------------TGTACAGAGGAAAAA---AAACCTCGTCTTATTTTTAGATTATTTACGCCAGTTTGGTGCCGTCGAAAGCGAAATTGTCGCTGTTGAA---------------------------------------------------	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.............................G--GAGG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCTCTGTCACAAGCAAG...............................................................................................................................................................................................................................................................................................................................................................................................	23	1	22.00	22	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	4	16	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................AGG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCTCTGTCACAAGCAAG...............................................................................................................................................................................................................................................................................................................................................................................................	21	1	14.00	14	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	13	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................AAGGAGAATCTA-GCAGGCGA................................................................................................................................................................................................................................................................................................................................................	20	1	13.00	13	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	6	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................AGG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCTCTGTCACAAGCAAGG..............................................................................................................................................................................................................................................................................................................................................................................................	22	1	11.00	11	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................AGAAGAAGGAGAATCTA-GCAGGCGA................................................................................................................................................................................................................................................................................................................................................	25	1	11.00	11	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	11	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................AAGAAGGAGAATCTA-GCAGGCGA................................................................................................................................................................................................................................................................................................................................................	23	1	11.00	11	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................G--GAGG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCTCTGTCACAAGCAAGGG.............................................................................................................................................................................................................................................................................................................................................................................................	25	1	8.00	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................AGGAGAATCTA-GCAGGCGAG...............................................................................................................................................................................................................................................................................................................................................	20	1	8.00	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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................................................................................................................................................................................................................................................................................................................................................................................................................CATCAGCCTCCCCG------------------------------------------------------------TGTACAGAGGAAA..............................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................ACGGAAAGAG--GAGG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCTCTGTCA.......................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................AGG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCTCTGTCACAAGCAAGGGGTA..........................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................GAAAGAG--GAGG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCTCTGTCACA.....................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................AGCTCTGTCACAAGCAAGGGGTA..........................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................AG--GAGG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCTCTGTCACAAGCAAGGG.............................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................AAGGGGTAAAGGATAAGA................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................CATCAGCCTCCCCG------------------------------------------------------------TGTACAGAG..................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................AGAAGAAGGAGAATCTA-GCG.....................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

AACAA---C-TGCAGGCGGAAAGGGAAGAA--GAGG----AG----------------------------------------------------------------------------------------------------------------------------------------------------------AACAA---------GAAGCTCTGTCAAAAGCAAGGGGTAAAGGATAAGAAGAGTAAGAAGAA---GAAGCTA-CCAAACGAGGAG---GATAAGATTAA-----AA---AA---CAAAAGGAAAGGAAACAGAGTAAGGAGA---AGAAGC------AGCAG-CAGCAA---AG---GGCAAATAATAA--AAAAAAGAAGCGGCATCAGCATCCCCG------------------------------------------------------------TGTACAGAGGAAAAA---AAACCTTGCGTTATTTTTAGATTATTTACGGCAGCTTAGTGCCGCCGAAATCGAAATTGTCGCTGTCGAA---------------------------------------------------	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
..............GGCGGAAAGGGAAGAA--GAGG----AG----------------------------------------------------------------------------------------------------------------------------------------------------------AACA.............................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGAAATCGAAATTGTCGCT.........................................................	21	1	1.00	1	0	0	0	1	0	0	0

droYak3

AACAA---C-TGCAGGCGGAAAAGGAAGAA--GAGA----CG----------------------------------------------------------------------------------------------------------------------------------------------------------AACAA---------GAAGCTCTATGAAAAGCAAGGGGTAAAGGATAAGAAGAGTAAGAAGAA------GCCA-CCAGAAAAGGAG---GATAAAACGAA-----AA---AG---CAAGAGGAAAGGGAATATAACAAGAAGA---AGAAGCAGATT---CAG-CAGCAA---AG---GGCAAATAATAA--GAAGAAGCAGCGGCATCAGCATCCCCG------------------------------------------------------------TGTACATAGGAAAAA---AAACCTTGTCTTATTTTTAGATTATTTACGCCAGCTTATTGCCGTCGAAATCGAAATTGTCGCTGTCGAA---------------------------------------------------	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
....A---C-TGCAGGCGGAAAAGGAAGAA--G....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	5.00	5	0	0	0	0	0	0	0	0	0	0	5
.....................................................................................................................................................................................................................................................................................................................................TATAACAAGAAGA---AGAAGCAGATT---CAG-C.............................................................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
....A---C-TGCAGGCGGAAAAGGAAGAA--GA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................ATAAAACGAA-----AA---AG---CAAGAGGAAAGGG..................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0

droEug1

AGGAA---G-------CAGGACGAAAAGGA--GAGG--------------------------------------------------------------------------------------------------AAAAGGTGAA------AGAG------------CCGCAACAAC---A---AGAAAAAAAGAATAGCAA---------GAAGCTCTGTCAAAAGCAAGGGGTAAAGGATAAGAAGA---------AGAATCAGCAG-CGAGGGGAGAAC---GATAAGAAGAA-----GC---AG---CAACAGAAAAGGTCAAATAATAAGAAGA---AGAAG---CCACAGCAA-CAGCAA---AG---GGCCAATAATAA--GAC---------GCAGCAGCATCCCGT------------------------------------------------------------TGTACACAGCAAAAA---AAGCCTTATACTATTTTTAGATTATTTACGGCAGTGCTGTCCCGCCGAAATCGAAATTGTCGCCGTCAAA---------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droBia1

AACAA---A-ACGGTGAAGAAGAAGAGGGG--GGAG----AA------------------------------------GAGGAG-------------------------------------------------CAAAAGGAAGA------AGAG---CAGCGACAGCCACTACAACAACA---AGTAAAAGAG---AATAA---------GAAGCTCTGCGAAAAGCAAGAGGTAAAGGATAAGAGGA---------A---GAAGCAG-CGAGGTGAGAAG---GATAA-----------------------------------------------GA---AGAAGCAGC---GGCAG-CAGCAA---AG---GGCAAATAAGAA--GA---AGAAGCAGCAGCAGCCTCCCCC------------------------------------------------------------TGTACACAGCAAAAA---AAGCCTTGTCTTATTTTTAGATCATTCTCGTGAGTGTCCCGCCAGC------GAAATTGTCGCCGCCGCC---------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droTak1

AAGAG---C-AGCCAGAACAACAACAAGAA--AAAC----TG----------------------------------------------------------------------------------------------------------------------------------------------------------ATTGA---------GAAGCTCTGTCAAAGGCGAGAGGTAAAGGATAACAAGAAGAAGCAGA-------------AAGGTGAGAAG---GATAAGAGGAA-----GC---AGGACCAGCAGCAAAGGGAAAATCACAAGAAGA---AGAAGCAA---GAGCAG-CAGCAA---AG---GGCAAATAAGAA--GAA---------GCAGCAGCCTCCCCG------------------------------------------------------------TGTACACGGCAAAAA---AAGCCTTGTCTTATTTTTAGATTATTCACGCCAGTGTCCCGCCATC------GAAATTGTCACCGTCGCC---------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEle1

GAGAA---A-CAAAAGGACAAGAAGA--------GA--------------------------------------------------------------------------------------------------AAAAAGAAGACGGGGAGA------------------AAAAACAACAACAACG---------------AGAGCAAAATAAGCTCAGTCAAAAAGAGAGGATAAAGAAGAA------------------------------------------------------------------------ACAAAGGGCAAATAAGAAAAAGA---AGAAGCA--TT----GCAC-ACTA---AG---GGCAAATAAG--------AAGAAGCACCATCAGCATCCCCT------------------------------------------------------------CATACACAGCAAAAA-ACAAGCCGTGTCTTATTTTTAGATTATTTACGCCTGTGTACCGCCATC------GAAATTGTCGCCGTCTCC---------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droRho1

AGCAA---A-GGGACAAGTAGTGGA--------------------------------------------------------------------------------------------------------------AAAACGAGAAG---AACAG---CAGAGAGTGCAACAAAAACAACATCAACG---------------AGAGCA---GGAGGTCTGTCAAAAAGAGAGAGTAAAGAAGAA-------------------------------------------------GCA-----CC---AG---C------AAAGGGCGAATAA------GA---AGAAGCA--TC----GCCC-AATA---AG---CGCAAAC--------AAGAAGAAGCACCATCAGCATCTTCT------------------------------------------------------------CATACACAGCGAAAAAACAAGCCCTGTCCTATTTTTAGATTATTTACGCCAGTGTACCGCCGTC------GAAATTGTCGCTGTCTCC---------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droFic1

AAGAG---A-AGGAGAAAA--------------------------------------------------------------------------------------------------------------------AAAGGAAGAAG------GGCCACAGAGAGTGCCGCAAAAACAACAAAATCA------AGTTAA---AGAGCATAAAAAGCACTGTCGAAAAGAGAGGTTAAAAAA----------------------------------------------------ATA-----TC---AG---CAAGGAAAGAAGGATACAAATCGGAAAGGGGAGAAGGA---T---AAG-AAGCAA---AG---AAAAAATAATAA--GAAGAAGA---------AGGTTCCCCG------------------------------------------------------------TGTGCACAGCAAAAA---AAGCCTTGTCTTATTTTTAGACTATACACGTC---GTCCCGCCATC------GAAATTGTCGCCGTTGTC---------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droKik1

AACAA---C-AACTGCAGCAGCACTCGAAG--GAGG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AG---------------------------------------------A------TAA-AAGGCAAAGAGGAACAAGAGAAGCT-----CG---GG---C------CAAGAGAGAATAA------GA---AGAAGC---------GCCC-AAAG---AG---GGG------CAA--GAAAAAGCAGCAGCAGCAGCATCCCCT-CGTCA--ATACCAATACCGATAC------------------AAATAAGTTACGTTACAGTGTGCGCAGCA---A---GAGCCTTGCCGTATTTTTAGATTATTTGCGACAGTGTCCCGCCATC------GAAATCGTCGCTG--------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droAna3

GGCGAAAATCATCTGGTGGGGCGAAAAGCGCGAGGCAGCAGG------------------------------AACTGTCAGCTGTGACGCCAGCAGCGCCAGCGACCGAGGAAGGAAAAGGTCAAGAAAACAAC------------------------------------AAAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAAC------AACAG-CAGCAG---AA---GCAAGAG-----------AAGAAGCAGAAACAGCATCA------------TACTAACACTAATACAATTACAAATACAAATACAAATAAATTAAGATACTGTGTGCGGAGCA---A---GAGCCTTGCCTTATTTTTAGATTACCTGCGACAGTGTCCCGCCATC------GAAATAGTCGCCGCCTGT---GACGA-------------------------------------------	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACCTGCGACAGTGTCCC.................................................................................	19	1	1.00	1	0	1	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGTGCGGAGCA---A---GAGCCTT..................................................................................................................	21	1	1.00	1	0	0	0	0	1	0
................................................................................................CGCCAGCGACCGAGGAAGGAAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1

droBip1

AGCGA---C-CGAGGAAGGAAAAGG------------------------------------------------------------------------------------------------TCAAGAAAGCAAC------------------------------------AACACCAACA---------------------------------------------GCACCAAGAG------------------------------------------------------------------------------------------TGCAGGAAGAAGA---AGAGGCA---TCAACAG-CAGC--------------------------------AGCAGCAGCATCATACCAC------------------------------------------------------------TACAACCAAGAGCAA---GAGCCTTGCCTTATTTTTAGATTACCTACGCCAGTGTCCCGCCATC------GAAATTGTCGCCGCCTGT---GACGACAGCACCGACCACGCCTACAACGGTCCGACACCTCCTCCTGCA	Size	Hit Count	Total Norm	Total
No Reads

dp5

AGAAA---T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAG-AAGCAA---AG---GTCAAGTCAA--------CAGCAGCGGCAGCATCATCCCCATCGGCAGCATACCAATACTAATACATGCACC---------ACCAATAAATTACGGTACAGCGTACGGAGCA---A---AAGCCTTGCCTTATTTTTAGACTATCTGCGCGAGTGTCCCTCTATT------CAAATTGTCGCTGCCGGCAGTGACG--------------------------------------------	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACTATCTGCGCGAGTGTCC..................................................................................	21	1	1.00	1	0	0	0	0	0	1	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................AGCATCATCCCCATCGGCAGCATACC..........................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................AG-AAGCAA---AG---GTCAAGTCAA--------CAGCAGC.......................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................AA--------CAGCAGCGGCAGCATCATCC..........................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1	0	0	0	0

droPer2

AGAAA---T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAG-AAGCAA---AG---GTCAAGTCAA--------CAGCAGCGGCAGCATCATCCCCATCGGCAGCATACCAATACTAATACATGCACC---------ACCAATAAATTACGGTACAGCGTACGGAGCA---A---GAGCCTTGCCTTATTTTTAGACTATCTGCGCGAGTGTCCCTCTATT------CAAATTGTCGCTGCCG-----------------------------------------------------	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATT------CAAATTGTCGCTGCC......................................................	18	1	5.00	5	5	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................ATCATCCCCATCGGCAGCATACCAATAC.....................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0
...AA---T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAG-AAGCAA---AG---GTCAAGTC........................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................GTCAA--------CAGCAGCGGCAGCA................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1

droWil2

AACAA---C-AACTACAGGAACATCAAGGA--G-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAC------CGA-AGCAAAAGGAGGAGAAAGAAAAGGA-----AA---AG---GAGAAGGAGAGAGAAAGAAA------GG---AGGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
..........................................................................................................................................................................................................................................................................................AGAAAGAAAAGGA-----AA---AG---GA.............................................................................................................................................................................................................................................................................................................	19	4	0.25	1	0	0	0	1	0

droVir3

AACAG---C-TGCAACAACAACAACAACTG--AGGC----AGCTCCAATTGCAAGCAAAGTAAATTTTAATCAATTGACAGCAG-------------------------------------------------CAACAGCAACAGC---AGCAG---CAAC---------------------------------------------------------------------------------------------------------CAT---AGCAACAAG---AGTAACAACAACAACAGCAGCAA---CAACAACAT--------CAGCAACAGGA---AACAACAGCAACAGCAA-CAACAACAGCA---GC--AACAACAACAAGAGCAGCAACAACAACAACATC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
.......................ACAACTG--AGGC----AGCTCCAATTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................AACAACAAGAGCAGCAACAACAACA................................................................................................................................................................................................................	25	4	0.25	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................AACAACAACAGCAGCAA---CAACAACAT--------C.............................................................................................................................................................................................................................................................................................	27	4	0.25	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................AACAACAGCA---GC--AACAACAACAAGA...............................................................................................................................................................................................................................	25	7	0.14	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................GCAACAGCAA-CAACAACAGC....................................................................................................................................................................................................................................................	20	20	0.10	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................A---AACAACAGCAACAGCAA-C.............................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................CAGCAA-CAACAACAGCA---GC--AA..........................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
........................................................................................................................................................................................................................................................................................................AACAGCAGCAA---CAACAACA.......................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................ACAGCAG-------------------------------------------------CAACAGCAACAGC---AGCAG---C.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................CAACAGCAA-CAACAACAGC....................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................AGCAA-CAACAACAGCA---GC--AAC.........................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................CAACAACAGCAGCAA---CAACA..........................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

AACAA---C-AGAAGCAGCAGCAGTAACAC--CAGC----AA----------------------------------------------------------------------------------------------------------------------------------------------------------AACC------------------AGCAGCAGCAATAGGAGCAGCAGCAGCAGCAGCAGCAGCA---GCA-------------GCAG---CAACAGGAGCA-----GC---AG---CAAGAAGAGAAGCAACA------GAAGC---AACAGCAGCATCAGTAG-CAGCAA---CA---GGAGCAACATTA--GCAACAGCAGCAACAACAGCATC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
...........................................................................................................................................................................................................................................................AGCAGCA---GCA-------------GCAG---CAACAGGAGC...............................................................................................................................................................................................................................................................................................................................	24	9	0.11	1	1	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................CAACAGCAGCAACAACAGC..............................................................................................................................................................................................................	19	20	0.10	2	0	0	0	0	2	0
...............................................................................................................................................................................................................................................................GCA---GCA-------------GCAG---CAACAGGAGC...............................................................................................................................................................................................................................................................................................................................	20	18	0.06	1	1	0	0	0	0	0
.......................................................................................................................................................................................................................................GGAGCAGCAGCAGCAGCAGCA.........................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	1	0
.......................................................................................................................................................................................................................................................................A-------------GCAG---CAACAGGAGCA-----GC---....................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	1	0	0	0	0	0
............................................................................................................................................................................................................................................................GCAGCA---GCA-------------GCAG---CAACAGGA.................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	1	0	0	0	0	0

droGri2

AACAA---C-TGCAAGAGCAGCTGGCAAAG--CGGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCAAAATCAAAAGCAGGTGGTGCAACAGCAGCAGCAGCAGCAGCA---ACA---A-CAACA------------------ACA-----ACAGCAACAACAACAACAACGACAACA------ACAGC---AGCAGCAGCAGCAGCAG-CAGCAA---CTTCAGTCACAGCAG-----GAGCAGCAGCAACAACAGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
............................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAG-CAGCAA---CTTCAGTC.............................................................................................................................................................................................................................................	24	1	1.00	1	1	0
........................................................................................................................................................................................................................................................................................................................................................................................ACAGCAG-----GAGCAGCAGCAACA...................................................................................................................................................................................................................	21	7	0.29	2	1	1
.................................................................................................................................................................................................................................................................................................................................ACAACA------ACAGC---AGCAGCAGCA......................................................................................................................................................................................................................................................................	21	20	0.20	4	2	2
...........................................................................................................................................................................................................................................................................A-CAACA------------------ACA-----ACAGCAACAACAACA..........................................................................................................................................................................................................................................................................................................	24	20	0.05	1	1	0
........................................................................................................................................................................................................................................................................................................................................................................................ACAGCAG-----GAGCAGCAGCA......................................................................................................................................................................................................................	18	20	0.05	1	1	0
.............................................................................................................................................................................................................................................ACAGCAGCAGCAGCAGCAGCA---ACA---A-C.......................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	1	0
.................................................................................................................................................................................................................................................CAGCAGCAGCAGCAGCA---ACA---A-CAACA------------------.................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	1	0
................................................................................................................................................................................................................................................GCAGCAGCAGCAGCAGCA---ACA---A-CAACA------------------.................................................................................................................................................................................................................................................................................................................................	27	20	0.05	1	1	0
.................................................................................................................................................................................................................................................................................................................................ACAACA------ACAGC---AGCAGCAGCAG.....................................................................................................................................................................................................................................................................	22	20	0.05	1	1	0
..............................................................................................................................................................................................................................................................................................................................................................................................G-----GAGCAGCAGCAACAACA................................................................................................................................................................................................................	18	20	0.05	1	1	0

dsi_16028

3l:20052849-20053038 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-27.2	-27.2	-27.1