ID:

dsi_16015

 Coordinate:

3l:15658507-15658656 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-6.2 -5.5 -5.5 -5.4

Flybase annnotation

exon [3l_15658657_15659021_-]; five_prime_UTR [3l_15658657_15659021_-]; intron [3l_15652339_15658656_-]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
TTTTCCAGTGCAAACTTGAGTTTTTCAAGAAAAAGAGAAAAGCCGTCAAGGTGAGCCCCAGTTTCATAGTGTATAGTATTTTGTGTACCCCAACCGAAAAATAACCCCAAATTAACGAAAACGTGTCGTCAGAAGGCAGAGGCAAAAGCTGAAATATATTTTGTTTGCTTTGCCTGTATCTTCACTCGCGCACACACACACACTATATCAGTAAAAAAAACCACACAGGCGCAAACGAGAATACGAGTGC
***************************************************************************((...((.(((........(((............................))).......))).))))*********************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
 M025
embryo
 SRR553487
NRT_0-2 hours eggs
 M023
head
 O001
Testis
 O002
Head
 SRR553488
RT_0-2 hours eggs
 SRR902009
testis
 GSM343915
embryo
 M053
female body
 M024
male body
...TCCAGTGCAAACTTGAGTTTTTCAAGA............................................................................................................................................................................................................................ 27 0 1 11.00 11 7 0 3 0 0 0 0 0 1 0 0 0 0
......................................................................................................................AAACGTGTCGTCAGAAGGCAGAGGC........................................................................................................... 25 0 1 2.00 2 0 0 0 2 0 0 0 0 0 0 0 0 0
...........................................................................GTATTTTGTGTACCCCAACCG.......................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0
.....................................................................................................................AAAACGTGTCGTCAGAAGGCA................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
....CCAGTGCAAACTTGAGTTTTTCAAGA............................................................................................................................................................................................................................ 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................TCAGAAGGCAGAGGCAAAAGCTGT.................................................................................................. 24 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0
................TGAGTTTTTCAAGAAAAAGAGA.................................................................................................................................................................................................................... 22 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
.....................................................................................................................................TGGCGGAGGCAAAAGCGGAAATA.............................................................................................. 23 3 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
....................................................................................................................................................CTGAAATATATTTTGTTTGCTTTGCCG........................................................................... 27 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
........TGCAAGCTTGACTTTTCCAAGA............................................................................................................................................................................................................................ 22 3 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
.................................................................................................................................................................TGTTTGCTTTGCCTGTGGCTT.................................................................... 21 2 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0
...........................................................................................................................................................................................................................ACCACACAGGCGCAAACGAGAATACG..... 26 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0
.................................................................................................................AACGAAAACGTGTCGTCAGAA.................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
........................TCAAGAAAAAGAGAAAAGCCGTCAAGTT...................................................................................................................................................................................................... 28 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................AAAAACCACCCTGGCGCAAA............... 20 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..............................AATAGAGAAAAGCCGT............................................................................................................................................................................................................ 16 1 4 0.75 3 0 3 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................AAAAACCACCCTGGCGCA................. 18 2 3 0.67 2 0 2 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................AAAACCACCCTGGCGCAAA............... 19 2 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................AAAAACCACCCTGGCGC.................. 17 2 20 0.20 4 0 4 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................AGCGGCAAAAGCTCAAAT............................................................................................... 18 2 18 0.17 3 0 0 0 0 0 0 0 0 0 0 0 2 1
.......................................................................................................................................................................................................................AAAAACCACCCTGGCGCTA................ 19 3 11 0.09 1 0 1 0 0 0 0 0 0 0 0 0 0 0
........................................................CCCGGTTCCATAGTGTA................................................................................................................................................................................. 17 2 13 0.08 1 0 1 0 0 0 0 0 0 0 0 0 0 0
............ATCTTGAGTTTTTCA............................................................................................................................................................................................................................... 15 1 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................CAGAGGCAAATGCTGACTT............................................................................................... 19 3 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

AAAAGGTCACGTTTGAACTCAAAAAGTTCTTTTTCTCTTTTCGGCAGTTCCACTCGGGGTCAAAGTATCACATATCATAAAACACATGGGGTTGGCTTTTTATTGGGGTTTAATTGCTTTTGCACAGCAGTCTTCCGTCTCCGTTTTCGACTTTATATAAAACAAACGAAACGGACATAGAAGTGAGCGCGTGTGTGTGTGTGATATAGTCATTTTTTTTGGTGTGTCCGCGTTTGCTCTTATGCTCACG
***********************************************************************************************************((...((.(((........(((............................))).......))).))))*************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553488
RT_0-2 hours eggs
 SRR902008
ovaries
 SRR902009
testis
 M023
head
 SRR553486
Makindu_3 day-old ovaries
 O001
Testis
 O002
Head
 GSM343915
embryo
 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 M024
male body		 M053
female body
 SRR553485
Chicharo_3 day-old ovaries
...........................................................................CATAAAACACACGGGGTTGGCTTTT...................................................................................................................................................... 25 1 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................ACAGCAGTCTTCCGTCTCCGT.......................................................................................................... 21 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................CCGTCTCCGTTTTCGACTTTA............................................................................................... 21 0 1 2.00 2 0 0 0 2 0 0 0 0 0 0 0 0 0
......................................................CGGGGCCAAAGTATCAGA.................................................................................................................................................................................. 18 2 2 1.00 2 1 0 0 0 1 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................AAATATAGTCATTTTTTTTGGTGT......................... 24 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................CAGTCTTCCGTCTCCGTTTTCG..................................................................................................... 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.......................................TTCGGCAGTTCCACTCGGGGT.............................................................................................................................................................................................. 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.......................................TTCGGCAGTTCCACTCGGGGTCA............................................................................................................................................................................................ 23 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0
.........................................................................................................................GCACAGCAGTCTTCCGTC............................................................................................................... 18 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
................................................TCCACTCGGGGTCAAAGTATC..................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................GTGTGTGTGATATAGTCA...................................... 18 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0
......................................................CGGGGCCAAAGTATCA.................................................................................................................................................................................... 16 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................GGGGCCAAAGTATCA.................................................................................................................................................................................... 15 1 2 1.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................AGGCGTCCGTCTACGTTTTCGA.................................................................................................... 22 3 2 0.50 1 0 0 0 0 0 0 0 0 0 1 0 0 0
...................................................TCTCGGTGTCAAAGTATC..................................................................................................................................................................................... 18 2 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................TTTTTGGTGGGACCGCG.................. 17 2 20 0.35 7 0 0 0 0 0 0 0 0 7 0 0 0 0
....................................................................................CGAAGGGTTGGCTTTTTATTG................................................................................................................................................. 21 3 5 0.20 1 0 0 0 0 0 0 0 0 1 0 0 0 0
......................................................CGGGGCCAAAGTATCAGAG................................................................................................................................................................................. 19 3 8 0.13 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................GCGGGGCCAAAGTATCAGA.................................................................................................................................................................................. 19 3 9 0.11 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................GCGGGGCCAAAGTATCAG................................................................................................................................................................................... 18 3 20 0.10 2 1 0 0 0 0 0 0 0 0 0 0 0 1
......TCACGTGCGAACTCAAGAAG................................................................................................................................................................................................................................ 20 3 10 0.10 1 0 0 0 0 0 0 0 0 0 0 1 0 0
.................................TCTCTTTTCGGCAGC.......................................................................................................................................................................................................... 15 1 10 0.10 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................GAAATGGAAATAGAAGTG................................................................. 18 2 12 0.08 1 0 0 0 0 0 0 0 0 0 1 0 0 0
....................................................CGCGGTGTCAAAGTATC..................................................................................................................................................................................... 17 2 14 0.07 1 0 0 0 0 1 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................TCAATTTTTTTGGTGT......................... 16 1 15 0.07 1 0 0 0 0 1 0 0 0 0 0 0 0 0
...................................................ACTGGGGGTCTAAGTGTCA.................................................................................................................................................................................... 19 3 19 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................GGGGCCAAAGTATCAGAG................................................................................................................................................................................. 18 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................TGGTGTGGTCCCGTTTGCT............ 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1 0
....................AAAAAGTTCTGTTACTCT.................................................................................................................................................................................................................... 18 2 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................TCTTTTTGGTGGGACCGCG.................. 19 3 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0 0

Generated: 04/23/2015 at 04:31 PM