ID:

dsi_16012

Coordinate:

3l:7894399-7894478 -

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

Flybase annnotation

CDS [3l_7894102_7894707_-]; Antisense to intron [3l_7875450_7896031_+]; exon [3l_7894102_7894882_-]

No Repeatable elements found

Sense Strand Reads

#################################################################################################################################################################################### GCTGAGGCACGTGTTCGAAAACGCCACGCCGCGGGATGAGCAGCAAGCGGGTTTGTTCGAGGAGTACAAGCCACCGCCGGATGCGGTGGAGCCCCTGGAGGAGGAGGCCTATCTTTGGAACTGCCTACAGGCTTGCTGCGAAAAGCCCCGGAATGGCAGCAGTGCCTGCAATGTGGTCCT ************************************************((...((((((((.......(((((((.....))))))).((((((.....))).)))...))))))))...))......************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M053 female body	O001 Testis	SRR553488 RT_0-2 hours eggs	SRR618934 dsim w501 ovaries	SRR553485 Chicharo_3 day-old ovaries	SRR553486 Makindu_3 day-old ovaries	M024 male body	SRR902009 testis	M023 head
..............................................................................................................................ACAGGCTTGCTGCGAAAAGCCCCGGA............................	26	0	1	1.00	1	1	0	0	0	0	0	0	0	0
..............................................................................................................................ACAGGCTTGCTGCGAAAAGCCCCG..............................	24	0	1	1.00	1	0	1	0	0	0	0	0	0	0
..............TCGAAAACGCCACGCCGCGGGATGA.............................................................................................................................................	25	0	1	1.00	1	1	0	0	0	0	0	0	0	0
......................................................................................................................................GCTGCGAAAAGCCTCGG.............................	17	1	2	0.50	1	0	0	1	0	0	0	0	0	0
....................................................TTGTTCGAGGAGGACA................................................................................................................	16	1	2	0.50	1	0	0	0	1	0	0	0	0	0
..........................................................................................................GCTTAACTTTGGAACTGC........................................................	18	2	9	0.33	3	0	0	0	0	2	1	0	0	0
.......................................................................................................................................CTGCGAAAAGCCGCGG.............................	16	1	4	0.25	1	0	0	1	0	0	0	0	0	0
...........................................CAAGCGGGTATGTTC..........................................................................................................................	15	1	7	0.14	1	0	0	0	1	0	0	0	0	0
...........................................................................................................................TCTACATGCATGCTGCGAAA.....................................	20	3	8	0.13	1	0	0	0	1	0	0	0	0	0
........................................................................................................AGGCGTAGCATTGGAACTG.........................................................	19	3	10	0.10	1	0	0	0	0	0	0	1	0	0
................................................................................................GGAGGAGGAGGGCTGTTTTT................................................................	20	3	16	0.06	1	0	0	0	0	0	0	0	1	0
......GCACGCGATCGAAACCGCC...........................................................................................................................................................	19	3	20	0.05	1	0	0	1	0	0	0	0	0	0
....................................................................................GCTCGAGCCCCGGGAGGA..............................................................................	18	3	20	0.05	1	0	0	0	0	0	0	0	0	1

Anti-sense strand reads

CGACTCCGTGCACAAGCTTTTGCGGTGCGGCGCCCTACTCGTCGTTCGCCCAAACAAGCTCCTCATGTTCGGTGGCGGCCTACGCCACCTCGGGGACCTCCTCCTCCGGATAGAAACCTTGACGGATGTCCGAACGACGCTTTTCGGGGCCTTACCGTCGTCACGGACGTTACACCAGGA ************************************************((...((((((((.......(((((((.....))))))).((((((.....))).)))...))))))))...))......************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553487 NRT_0-2 hours eggs	SRR618934 dsim w501 ovaries	SRR553488 RT_0-2 hours eggs	SRR553485 Chicharo_3 day-old ovaries
....................................................AAGAAGCTTCTCAGGTTCGGT...........................................................................................................	21	3	6	0.33	2	2	0	0	0
..............................................................................................................................TATCGAAACGACGCTTTTCGGG................................	22	3	3	0.33	1	0	1	0	0
................................................................GTGTTCGGTGGCGGCC....................................................................................................	16	1	5	0.20	1	1	0	0	0
....................TGCGCTGCGGAGCCCTA...............................................................................................................................................	17	2	7	0.14	1	1	0	0	0
......................CGCTGCGGAGCCCTATTCG...........................................................................................................................................	19	3	10	0.10	1	1	0	0	0
.......................................................AAGCTCCTCTTGTTCG.............................................................................................................	16	1	12	0.08	1	0	0	1	0
..................................................................GTTCGGTGACGGCCTAG.................................................................................................	17	2	18	0.06	1	1	0	0	0
..................................................................................................................AACTTCCACGGATGTCCGA...............................................	19	3	20	0.05	1	0	0	0	1

Generated: 04/24/2015 at 10:31 AM