ID:

dsi_16000

Coordinate:

3r:17393746-17393802 -

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

Flybase annnotation

exon [3r_17393468_17393745_-]; CDS [3r_17393468_17393745_-]; CDS [3r_17393803_17393902_-]; exon [3r_17393803_17393902_-]; intron [3r_17393746_17393802_-]

No Repeatable elements found

Sense Strand Reads

##################################################---------------------------------------------------------################################################## TGAGCAGCGATGGTTGTCGGTACTCCTGCCCCTGCTCCTTTTGTACGACAGTAGGTGTTTCATCCGGATTAATTGGAGTATATAGACTAATGATCTTCTATGCACAGATCCCTTCTTCCCGCTGATATTCCTGATGAACTCCTGGATGCCTGGAATG ************************************************....((((.......((((((.((((..........)))))))))).....))))..************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M025 embryo	SRR553485 Chicharo_3 day-old ovaries	M023 head	M024 male body	SRR553487 NRT_0-2 hours eggs	SRR553488 RT_0-2 hours eggs	SRR553486 Makindu_3 day-old ovaries
.................................................................................................................................CCTGATGAACTCCTGGATGCCTGGA...	25	0	1	1.00	1	1	0	0	0	0	0	0
.................................................................................................................................CCTGATGAACTCCTGGATG.........	19	0	1	1.00	1	0	0	0	1	0	0	0
................TCGGTACTCCTGCCCCTGCTCC.......................................................................................................................	22	0	1	1.00	1	0	1	0	0	0	0	0
.......................................................................................................................CGCTGATATTCCTGATGAACT.................	21	0	1	1.00	1	0	0	1	0	0	0	0
.................................................................................................................................CCTGATGAACTCCTGGATGCCTGGG...	25	1	1	1.00	1	1	0	0	0	0	0	0
..........................................GTACGAAAGTAGGTCTT..................................................................................................	17	2	8	0.63	5	0	0	0	0	3	2	0
............................................................CATGCGGATTAATTCGA................................................................................	17	2	17	0.18	3	0	1	0	0	1	0	1

Anti-sense strand reads

ACTCGTCGCTACCAACAGCCATGAGGACGGGGACGAGGAAAACATGCTGTCATCCACAAAGTAGGCCTAATTAACCTCATATATCTGATTACTAGAAGATACGTGTCTAGGGAAGAAGGGCGACTATAAGGACTACTTGAGGACCTACGGACCTTAC ************************************************....((((.......((((((.((((..........)))))))))).....))))..************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M024 male body	SRR553487 NRT_0-2 hours eggs	M053 female body	SRR618934 dsim w501 ovaries
.....................................................CCACAAGCTAGGCGTAATTAAC..................................................................................	22	3	2	0.50	1	1	0	0	0
........................................................................................................GTCTCGGGAAGAAGGGCA...................................	18	2	6	0.33	2	1	0	1	0
...............................................................................................................GAAGAAGGGCGCCTA...............................	15	1	5	0.20	1	0	1	0	0
.......................................................ACAAAGTAGGCCTGAAT.....................................................................................	17	2	12	0.08	1	0	0	0	1

Generated: 04/23/2015 at 06:54 PM