ID:

dsi_1600

 Coordinate:

2l:10213374-10213523 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-22.1 -22.1 -22.1

Flybase annnotation

five_prime_UTR [2l_10213274_10213389_+]; CDS [2l_10213390_10213602_+]; exon [2l_10213274_10213602_+]

No Repeatable elements found

Sense Strand Reads

##########################################################################################################################################################################################################################################################
ATATATCTATTGTATAATATTAGTACGAGTATAACCGCTGAGCTTAGTCGTAAAATCGCTGAAATAATGTCGGCGAAATTGCTAATTGCGGCGCTTAGTTTGTGCCTACTGCAGTCGGGGCTAGTACAGGGTATATCATTATCACTCGGAGATATAACCCTTTTCAATGTTAACTTCAAAACACCAACCTTTTTGGGAAGATCCGTGGCGGTGGACAGCAATGTGCGGCTGGAGAACGATGTGGATCCCA
*************************************************************......(((.(((...(((((.......(((((.......)))))....)))))....)))...)))(((((((((.............))))).))))****************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 M025
embryo
 M024
male body		 M053
female body
 O002
Head
 O001
Testis
 SRR1275483
Male prepupae		 SRR618934
dsim w501 ovaries
 SRR902009
testis
 GSM343915
embryo
 SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
.............................................................AAATAATGTCGGCGAAATTGC........................................................................................................................................................................ 21 0 1 5.00 5 3 0 2 0 0 0 0 0 0 0 0 0 0
...................TTAGTACGAGTATAACCGCTGAGCTT............................................................................................................................................................................................................. 26 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0 0
.......................TACGAGTATAACCGCTGAGCT.............................................................................................................................................................................................................. 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0
........................ACGAGTATAACCGCTGAGCTT............................................................................................................................................................................................................. 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................ATGTCGGCGAAATTGCTAATTGCGG............................................................................................................................................................... 25 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0
...............AATATTAGTACGAGTATAACCGCTGAGC............................................................................................................................................................................................................... 28 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................CGGCTGGAGAACGATGTGGAT.... 21 0 1 2.00 2 1 0 1 0 0 0 0 0 0 0 0 0 0
...............................................................ATAATGTCGGCGAAATTGC........................................................................................................................................................................ 19 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0
......................................................ATCGCTGAAATAATGTCGGC................................................................................................................................................................................ 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................TGCGGCTGGAGAACGATGTGG...... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.........................CGAGTATAACCGCTGAGCTTA............................................................................................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..........................GAGTATAACCGCTGAGCTTAGTC......................................................................................................................................................................................................... 23 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
..............................................................AATAATGTCGGCGAAATTGCTAAT.................................................................................................................................................................... 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................CATTATCACTCGGAGATATAACCC.......................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
................................AACCGCTGAGCTTAGTCGT....................................................................................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................GGAGAACGATGTGGATCCCA 20 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
......................................................ATCGCTGAAATAATGTCGG................................................................................................................................................................................. 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
....................TAGTACGAGTATAACCGCTGAGCT.............................................................................................................................................................................................................. 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................TATCATTATCACTCGGAGATA................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................ATCACTCGGAGATATAACCC.......................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................ATCATTATCACTCGGAGATAT............................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................CGGCTGGAGAACGATGTGGATC... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..........................GAGTATAACCGCTGAGCTTAG........................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................GAAGATCCGTGGCGGTGGA................................... 19 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................GTGCGGCTGGAGAACGATGTG....... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
....................TAGTACGAGTATAACCGCTGAGCC.............................................................................................................................................................................................................. 24 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................AATCGCTGAAATAATGTCGGC................................................................................................................................................................................ 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................AATAATGTCGGCGAAATTGC........................................................................................................................................................................ 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.........................................................................CGAAATTGCTAATTGCGGCGC............................................................................................................................................................ 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................ATGTGCGGCTGGAGAACG............ 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................GTTTGTGCCTACTGCAGTCG..................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
......................GTACGAGTATAACCGCTGAGCTT............................................................................................................................................................................................................. 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................AATGTGCGGCTGGAGAACGATGTGGA..... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................AACCTTTTTGGGAAGATCCGT............................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.........................CGGGTATAACCGCTGAGCT.............................................................................................................................................................................................................. 19 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...................TTAGTACGAGTATAACCGCTGAGCT.............................................................................................................................................................................................................. 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................................GAAATTGCTAATTGCGGCG............................................................................................................................................................. 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................TACGAGTATAACCGCTGAGC............................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
..............................................................................................................GCAGTCGGGGCTAGTACA.......................................................................................................................... 18 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0
..................ATTAGTACGAGTATAACCGCTGAGCTT............................................................................................................................................................................................................. 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................TTTGTGCCTACTGCAGTCGGG................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0
...................................................................................................................................................................................................GGAAGATCCGTGGCGGTGGAC.................................. 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0
...............................................................................................................CAGTCGGGGCTAGTACAGGGT...................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................GCGGCTGGAGAATGATGTG....... 19 1 2 0.50 1 0 0 0 0 0 0 0 0 0 1 0 0 0
...........................................................................................................................................................................................................CGTGGCGGTTGACGGCA.............................. 17 2 14 0.43 6 0 0 0 0 0 0 0 0 0 0 4 0 2
...........................................................................................................................................................................................................CGTGGCGGCGGACGGCA.............................. 17 2 20 0.30 6 0 0 0 0 0 0 0 0 0 0 6 0 0
..............................................................AAAAAAGTCGGCGAAAGTGCT....................................................................................................................................................................... 21 3 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 1 0
...................................................................................................................................................................................AAAACCAACCTTTTTGAGATG.................................................. 21 3 6 0.17 1 0 0 0 0 0 0 0 0 0 1 0 0 0
................................................................TGATCTCGGCGAAATTGC........................................................................................................................................................................ 18 2 12 0.08 1 0 0 0 0 0 0 0 0 0 0 0 1 0
..................................................................................................................................................................TGCATTGTTAACTTGAAAACA................................................................... 21 3 14 0.07 1 0 0 0 0 0 0 0 0 0 0 0 0 1
..........................................................................................................................................................................................................ACGTGGCGGTTGACGGCAA............................. 19 3 15 0.07 1 0 0 0 0 0 0 0 0 0 0 0 1 0
..................................................................................................TTTGTGCCGACTGAACTCG..................................................................................................................................... 19 3 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

TATATAGATAACATATTATAATCATGCTCATATTGGCGACTCGAATCAGCATTTTAGCGACTTTATTACAGCCGCTTTAACGATTAACGCCGCGAATCAAACACGGATGACGTCAGCCCCGATCATGTCCCATATAGTAATAGTGAGCCTCTATATTGGGAAAAGTTACAATTGAAGTTTTGTGGTTGGAAAAACCCTTCTAGGCACCGCCACCTGTCGTTACACGCCGACCTCTTGCTACACCTAGGGT
******************************************************************************************......(((.(((...(((((.......(((((.......)))))....)))))....)))...)))(((((((((.............))))).))))************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M023
head
 M024
male body		 O002
Head
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
.................................TGGCGACTCGAATCAGCATTT.................................................................................................................................................................................................... 21 0 1 5.00 5 4 1 0 0 0 0 0 0
................................TTGGCGACTCGAATCAGCATT..................................................................................................................................................................................................... 21 0 1 2.00 2 0 2 0 0 0 0 0 0
.........................................CGAATCAGCATTTTAGCGACT............................................................................................................................................................................................ 21 0 1 2.00 2 1 1 0 0 0 0 0 0
.............................................TCAGCATTTTAGCGACTTTAT........................................................................................................................................................................................ 21 0 1 2.00 2 1 1 0 0 0 0 0 0
.................................................................................................................................................................ACTGTTACAGTTGAAGTTTTGT................................................................... 22 3 2 1.00 2 0 0 0 2 0 0 0 0
.....................................................................................................................CCCGATCATGTCCCATATAGT................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0
........................................TCGAATCAGCATTTTAGCGAC............................................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0
...............................................................................................................................TCCCATATAGTAATAGTGAGC...................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0
..........................................................................................................................................................................................................GGCACCGCCACCTGTCGTTAC........................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................GCCGACCTCTTGCTACACCTA.... 21 0 1 1.00 1 1 0 0 0 0 0 0 0
....................ATCATGCTCATATTGGCGACT................................................................................................................................................................................................................. 21 0 1 1.00 1 0 0 1 0 0 0 0 0
.................................CGGCGACTCGAATCAGCATTT.................................................................................................................................................................................................... 21 1 1 1.00 1 0 1 0 0 0 0 0 0
...................................................................................................................................................................................................CCTTCTAGGCACCGCCACCTGT................................. 22 0 1 1.00 1 0 0 1 0 0 0 0 0
...............................ATTGGCGACTCGAATCAGCAT...................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0
.........................................................................................................................................................TATTGGGAAAAGTTACAATTG............................................................................ 21 0 1 1.00 1 0 0 1 0 0 0 0 0
......................................................................................................................................................CTATATTGGGAAAAGTTACAAT.............................................................................. 22 0 1 1.00 1 0 0 1 0 0 0 0 0
.................................TGGCGACTCGAATCAGCATT..................................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0
.............................................TCAGCATTTTAGCGACTTTATT....................................................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0
..........................................................................................................................................................................................GGGAAAAACCCTTCTAGGCA............................................ 20 1 1 1.00 1 0 1 0 0 0 0 0 0
.......................................................................................................................................................................................................................GTCGTTACACGCCGACCTCTT.............. 21 0 1 1.00 1 1 0 0 0 0 0 0 0
...............................................................................................AACAACCACGGATGAC........................................................................................................................................... 16 2 20 0.25 5 0 0 0 2 2 0 0 1
.................................TGGCGACTCGATTCCGC........................................................................................................................................................................................................ 17 2 5 0.20 1 0 0 0 0 1 0 0 0
.....................................................................................................CACGGATGTCGTGCGCCCC.................................................................................................................................. 19 3 7 0.14 1 0 0 0 0 1 0 0 0
.......................................................................................................................................................................GCAATTGAAGTTTTG.................................................................... 15 1 13 0.08 1 0 0 0 0 0 1 0 0
.............................................................................................GAATCGAACTCGGATG............................................................................................................................................. 16 2 20 0.05 1 0 0 0 0 1 0 0 0
..............................................................................................................................................................................................AAAACCCTTCGCGGCAC........................................... 17 2 20 0.05 1 0 0 0 0 1 0 0 0
..............................................................................................................................................................GGAAAAGTTACATTT............................................................................. 15 1 20 0.05 1 0 0 0 0 0 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2l:10213324-10213573 + dsi_1600 ATAT--------------------------ATCTATTG---------TATAAT----A-----------TTAGTACGAGTATA---------AC--CG--CT----GAGCTTAGTCGTAAAATCGCTGAAATAATG---------------TCGGCGAAATTGCTAATTGCGGCGCTTAGTTTGTGCCTACTGCAGTCGGGGCTAGTACAGGGTATATCATTATCACTCGGAGATATAACCCTTTTCAATGTTAACTTCAAAACACCAACCTTTTTGGGAAGATCCGTGGCGGTGGACAGCAATGTGCGGCTGGAGAACGATGTGGATCCCA
droSec2 scaffold_3:5956324-5956573 + ATAT--------------------------ATCTATTG---------TACGAT----A-----------TTAGTACGAGTATA---------AG--CG--CT----GAGTTTAGTCGTAAAATCGCTGAAATAATG---------------TCGGCGAAATTGCTAATTGCGGCGCTTAGTTTGTGCCAACTGCAGTCGGGGCTAGTACAGGGTATATCATTATCGCTCGGAGATATAACCCTTTTCAATGTTAACTTCAAAACGCCAACTTTTTTGGGAAGATCCGTGGCGGTGGACAGCAATGTGCGGCTGGAGAACGATGTGGATCCTG
dm3 chr2L:10529468-10529720 + ATAT--------------------------ATCTATTG---------TATTAT----A--------ATAGTAGTACGAGTGTA---------AC--CG--CT----GAGATTAGTCGTAAAATCGGTGAAATAATG---------------TCGGTGAAATTGCTAATTGTAGCGCTTAGTTTGTGCCTCCTGCAGTCGGGCATCGTCGAGGGTATATCATTATCACTCGGAGATATAACCCTCTTTAATGTTAACTTCAAAACACCAACTTTTTTGGGAAGATCCGTGGCGGTGGATAGCAATGTGCGGTTGGAGAACGATGTGGATCCCA
droEre2 scaffold_4929:14897299-14897539 - ATAG--------------------------ATCTATTG---------TATAAT----A--------ATA------------TA---------CC--CG--CT----GAGCTCGGTCGTAAAACTGCTGAAATAATG---------------TCGGCAAAATTGCTAATTGTGGCCCTTAGTCTCTGCCTACTGCAGTCGGGCATCGTCGTGGCCATATCATTATCACTCGGAGACGTAACTCTGTTCAACGTTAACTTCAAAACACCGACCTTTTTGGGAAGAACTGTAGTGTTGGACAGCAATGTGCGGCTGGAGACCGATGTGGATCCCA
droYak3 2L:6937805-6938044 + TA-T--------------------------ATCTATTG---------TATAAT----A--------ATA------------TA---------CA--CG--CT----GAGCTCAGTCGTAAAACTGCTGGAATAATG---------------TCGGCAAAATTGCTAATTGTGGCCCTTAGTCTGTGCCTACTGCAGTCGGGCATCGTCGAGGGTATATCATTGTCACTCGGAGACATAACCCTCTTCAACGTTAACTTCAAGACACCGACCTTTTTGGGAAGATCGGTGGCGGTGGACAGCAATGTGCGGCTGGAGAACGACGTGGATCCCA
droEug1 scf7180000409554:4381949-4382182 - TA-T--------------------------ATCTATC----------TATATT----C-----------ATAGTA------TA---------AA--TA--T---------TAAGTCGTAAAACTAGTGAA---ATG---------------TCAGCAAAATTGCTAATAGTTGCCCTAACTCTGTGCCTCATGCACTCCGGAATCGTCGATGGTCTATCACTGACGCTTGGAAATATCACCCTCTTCAACGTTAACTTCAAAACGCCGACCTTTCTGGGCCGATCCGTGGCGGTGGACAGTAATTTGCGGATAGAAAACGATGTGGATCCCA
droBia1 scf7180000302422:8463862-8464104 + ATAC--------------------------CTATAT-ATATTCATTGTGTA---------------TTA------------TA---------CA--CA--TT----AGGCGGAGCCGTAAAACTGGTGAA---ATG---------------TCGGCACATTTGCTAATATTGGCCCTAGGTCTGTGCCTACTGCAATCGGCAGTCGTCGCGGGTTTATCTCTCACGTTCGGCAACCTCACCCTGTTCAACGTCAACTTCAAGACGCCCACCATCTTGGGTCGATCCGTGGCCCTGGACAGCAATCTGCGGATCGAGAACGATGTGGATCCCA
droTak1 scf7180000415160:172114-172338 + ATAT--------------------------CTATCC-AAATTCATTGTGTA-------------------------------------------------TT----TAGTTGAGCCGTAAA------------ATG---------------TCGGCAAAATTGCTAATCGTTACCCTGAGTCTGTGCCTAATGCAGTCGGTAATTGTTGAGGGGATATCTTTGACGTTCGGAAACCTCACGCTCTTCAACGTGAACTTCAAGACGCCGACCTTTTTGGGTCGGTCAGTAGCAGTAGACAGCAACCTGAGGATCGAGACCGATGTGGATCCCA
droEle1 scf7180000491186:3668413-3668651 + TGA---------------------------ATTTATTA---------TACAAT----A--------ATA------------------TATA-CT--TA--TT----TAGTTAGGCAGTAAAATTGGTGAA---ATG---------------ACCGCAAAAATACTAGTAACGACCCTAACTCTGGCCCTACTGCAGTCGGGAATCGTTGAGGGTCTATCTTTGTCATTTGGAAACGTAACCCTCTTTAATGTTATGTTCAAATCGCCCAGTTTTCTGGGTCGCTCAGTGGCGGTGGACAGCAATTTGCGGATTGAAAACGATGTGGATCCCA
droRho1 scf7180000778841:15944-16188 + TA-T--------------------------ACTCATTA---------TACAAT----ATATATAAATTA------------TA---------CC--CA--TT----GGACTTAGCCGTAAAATTGGTGAA---ATG---------------ACTGCAAATTTGCTTGTGGCGACCCTAAGTCTGTGCCTACTGCAGTCGGGAATCGCAGAGGGTTTATCTCTGTCGTTTGGAAACATCACCCTCTTTAATGTGAACTTCAAGTCGCCCAGCTTCTTGGGTCGCTCAGTGGCGGTGGACAGCAATCTGCGGATCGAAAACGACGTGGATCCCA
droFic1 scf7180000453838:792715-792953 + CTAT--------------------------AATCATTA---------TACACAA---A--------ATA------------TT---------TA--CA--TA----CTGTTAAACAGTAAAATGGGTGAA---ATG---------------TCAGCAAGTTTGCTAATAGTTTTGCTAAGTGTGTGTCTACTGCAATCGGGAATCGCCGAGGGACTAACGTTAACGCTGGGAAACATCACCCTCTTCAATGTGAACTTTAAAACACCCACGTTTCTGGGTCGCTCAATTGCAGTGGACAGCAATTTGCGGATTGAACACGACGAGGATCCCA
droKik1 scf7180000302472:2796894-2797125 - GGAC--------------------------T-CTAATA---------TATA------------------------------TACACATTGTGCC--AA--A---------CCGGAGCTAAAATGAGGGAA---ATG---------------TCAGTGAATCTGTTCATCTCTGGCCTGTGTCTGTGCCTGCTGCAGACA---TCCGTCTCGGGACTTACCTTCTCCCTGGGAAACCTTACTTTGTTCAACGTAAACTTCAAGACACCCACGCTTCTGGGTCGATCCGTGGCCGTGGACAGCAATGTGCGGATCGAGAACGATGTGGATCCCA
droAna3 scaffold_12916:14375398-14375611 + TAAA--------------------------AATAA-G-------------------------------------------------------------------------ATAATTATAAAATGAGAGAA---ATG---------------TCTGGAACTATACTAACAATCGGTGTGTGCCTGTGCCTGCTACAACCCGAAATCGCCGCGAGTTTGTCATTTTCATGGGGCAACCTCTCCCTCTTTAATGTCAACTTCAAGACCCCCACAATCCTGGGGCGCTCCATTGCCATGGACAGTAATCTGCGGGTGGAAACCGAGGTGGATCCCA
droBip1 scf7180000396572:2594042-2594257 - AAAA--------------------------AATTA-TA---------TATAAT----T----------------------------------------------------------AAACAATGAGAGAA---ATG---------------TCGGGGAATATACTATTAGCCGTAGTGTGCCTGTGCCTTATACAAACCAGAATCGCAGCGAGTTTGTCATTTTCGTGGGACAACCTCTCCCTCTTCAATGTCAACTTCAAGACCCCCACCATCCTGGGGCGCTCCATTGCCATGGACAGCAATCTGAGGGTGGAGAACGAGGTGGATCCCA
dp5 4_group4:2736138-2736401 + AACCCCCCCACGAGAGGGAGAACACACACTATATAGTA---------TATAG-----A------G--TA------------------TATA-CAG----AGACAGA-----------------TACAGAG---ATGTCATTATCA---TCGTCGGCGAGTCTGCTCATCGGCGCCCTATGCCTGTGCCTGGTCCAGCCGGAGATCAGCGCCGGTCTGGCAATGGTGCTGGGCAATGTCACCCTCTTCAACGTCCAATTCAAGTCCCCCAGCTGGCTGGGGCGCTCCATAGTCGCGGACAGTAACCTGCGGATAGAGAGCGATGTGGATCCCA
droPer2 scaffold_10:1744401-1744664 + AACCCCCCAACGAGAGGGAGAACACACACTATATAGTA---------TATAG-----A------G--TA------------------TAGA-CAG----AGACAGA-----------------TACAGAG---ATGTCATTATCA---TCGTCGGCGAGTCTGCTCATCGGCGCCCTATGCCTGTGCCTGGTCCAGCCGGAGATCAGCGCCGGTTTGGCAATGGTGCTGGGCAATGTCACCCTCTTCAACGTCCAATTCAAGTCCCCCAGCTGGCTGGGGCGCTCCATAGTCGCGGACAGTAACCTGCGGATAGAGAGCGATGTGGATCCCA
droWil2 scf2_1100000004521:10835463-10835670 - ATGT--------------------------CTTTACCA---------T---------------------------------------------------------------------------CATCGACATCA--------------TCGTCGAGTCGTCTGGTCTTTGGCTTGCTTTGCCTTGGCCTATTAACAAACGAGATTGGGGCAAATTTAACATTCATGTTTTCAAATCTAACATTATTCAATGTGGAATTCAAATCGCCCAGTTGGCTGGGCAGATCCATAGCCGTTAATAGCAATCTGAGGATTGAAAACGATGTCGATCCAA
droVir3 scaffold_12963:10493144-10493395 - ATAT--------------------------ATATAT-A---------TATATA----T--------ATA------------------TATA-TATAAATAT-------------TTATATACATATAGGAAAAATGTCATTAGCGTTGGGTCTGAAGCAGCTGCTGCTTTTTGCACTGTGCCTTTGTCTGGTTCCACGCTCGAGCAATGCGGATTTATCATTTCTGTTCGGCAATATTACGCTTTTCAATGTGAACTTTAAGACCCCAGCTTTGCTGGGCCGTTCGATATCGGTGAAGAGCAATGTGAATATTGATAATAGTGTGGATCCCA
droMoj3 scaffold_6500:19199492-19199723 - TAAT--------------------------ATATATTA---------GCTAT-----A------C--TT------------------CCTA-TAT----ATTTATA-----------------TACAGAAAAAATGTTATTA------------AAGCCGTTTGTGCTATTTGTCGTGTGCCTGTGTCTGGCTCCTCCGGAGAGCCAAGCGGATTTATCATTTATCTTTGGAAATATTTCGCTATTCAATTTGAACTTCAAGACGCCAAAACTGCTGGGGCGCTCCATAACTGTAAACAGTAATGTGAAAATTGATAGCGATGTGGACCCCA
droGri2 scaffold_15252:8549207-8549440 - CTCC--------------------------CAGTACTA---------TATAACCTATA-----------CTAGT-------------------------------------------------ACT---AAAAATGTCATTAAATTTGCGCTTGAGGCAGCTACTGCTTTTTACTCTATGCCTTTGTCTTGTTCCACTGGAGAGCAATGCGGATTTATCATTTCTGCTTGGAAATATTACGCTTTTCAATGTGAACTTCAAGTCTCCCAAGTGGCTTGGTCGCTCCATATCTGTGCAGAGCAATTTGCGTATTGACACTGAAGTCGATCCCA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
ATAT--------------------------ATCTATTG---------TATAAT----A-----------TTAGTACGAGTATA---------AC--CG--CT----GAGCTTAGTCGTAAAATCGCTGAAATAATG---------------TCGGCGAAATTGCTAATTGCGGCGCTTAGTTTGTGCCTACTGCAGTCGGGGCTAGTACAGGGTATATCATTATCACTCGGAGATATAACCCTTTTCAATGTTAACTTCAAAACACCAACCTTTTTGGGAAGATCCGTGGCGGTGGACAGCAATGTGCGGCTGGAGAACGATGTGGATCCCASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
................................................................................................................................AAATAATG---------------TCGGCGAAATTGC........................................................................................................................................................................2115.00532000000000000000
.....................................................................TTAGTACGAGTATA---------AC--CG--CT----GAGCTT............................................................................................................................................................................................................................2612.00202000000000000000
.........................................................................TACGAGTATA---------AC--CG--CT----GAGCT.............................................................................................................................................................................................................................2112.00220000000000000000
..........................................................................ACGAGTATA---------AC--CG--CT----GAGCTT............................................................................................................................................................................................................................2112.00220000000000000000
.....................................................................................................................................ATG---------------TCGGCGAAATTGCTAATTGCGG...............................................................................................................................................................2512.00200200000000000000
..................................................AAT----A-----------TTAGTACGAGTATA---------AC--CG--CT----GAGC..............................................................................................................................................................................................................................2812.00200200000000000000
...................................................................................................................................................................................................................................................................................................................CGGCTGGAGAACGATGTGGAT....2112.00211000000000000000
..................................................................................................................................ATAATG---------------TCGGCGAAATTGC........................................................................................................................................................................1912.00200200000000000000
.........................................................................................................................ATCGCTGAAATAATG---------------TCGGC................................................................................................................................................................................2011.00110000000000000000
.................................................................................................................................................................................................................................................................................................................TGCGGCTGGAGAACGATGTGG......2111.00110000000000000000
...........................................................................CGAGTATA---------AC--CG--CT----GAGCTTA...........................................................................................................................................................................................................................2111.00110000000000000000
............................................................................GAGTATA---------AC--CG--CT----GAGCTTAGTC........................................................................................................................................................................................................................2311.00101000000000000000
.................................................................................................................................AATAATG---------------TCGGCGAAATTGCTAAT....................................................................................................................................................................2411.00101000000000000000
..........................................................................................................................................................................................................................CATTATCACTCGGAGATATAACCC..........................................................................................2411.00110000000000000000
..................................................................................A---------AC--CG--CT----GAGCTTAGTCGT......................................................................................................................................................................................................................1911.00110000000000000000
........................................................................................................................................................................................................................................................................................................................GGAGAACGATGTGGATCCCA2011.00100000100000000000
.........................................................................................................................ATCGCTGAAATAATG---------------TCGG.................................................................................................................................................................................1911.00101000000000000000
......................................................................TAGTACGAGTATA---------AC--CG--CT----GAGCT.............................................................................................................................................................................................................................2411.00110000000000000000
.......................................................................................................................................................................................................................TATCATTATCACTCGGAGATA................................................................................................2111.00110000000000000000
..............................................................................................................................................................................................................................ATCACTCGGAGATATAACCC..........................................................................................2011.00110000000000000000
........................................................................................................................................................................................................................ATCATTATCACTCGGAGATAT...............................................................................................2111.00100010000000000000
...................................................................................................................................................................................................................................................................................................................CGGCTGGAGAACGATGTGGATC...2211.00110000000000000000
............................................................................GAGTATA---------AC--CG--CT----GAGCTTAG..........................................................................................................................................................................................................................2111.00101000000000000000
......................................................................................................................................................................................................................................................................................GAAGATCCGTGGCGGTGGA...................................1911.00100010000000000000
................................................................................................................................................................................................................................................................................................................GTGCGGCTGGAGAACGATGTG.......2111.00100100000000000000
......................................................................TAGTACGAGTATA---------AC--CG--CT----GAGCC.............................................................................................................................................................................................................................2411.00110000000000000000
........................................................................................................................AATCGCTGAAATAATG---------------TCGGC................................................................................................................................................................................2111.00100100000000000000
.................................................................................................................................AATAATG---------------TCGGCGAAATTGC........................................................................................................................................................................2011.00101000000000000000
...........................................................................................................................................................CGAAATTGCTAATTGCGGCGC............................................................................................................................................................2111.00100010000000000000
..............................................................................................................................................................................................................................................................................................................ATGTGCGGCTGGAGAACG............1811.00100100000000000000
...................................................................................................................................................................................GTTTGTGCCTACTGCAGTCG.....................................................................................................................................2011.00100001000000000000
........................................................................GTACGAGTATA---------AC--CG--CT----GAGCTT............................................................................................................................................................................................................................2311.00100100000000000000
.............................................................................................................................................................................................................................................................................................................AATGTGCGGCTGGAGAACGATGTGGA.....2611.00110000000000000000
...........................................................................................................................................................................................................................................................................AACCTTTTTGGGAAGATCCGT............................................2111.00110000000000000000
.....................................................................TTAGTACGAGTATA---------AC--CG--CT----GAGCT.............................................................................................................................................................................................................................2511.00100100000000000000
............................................................................................................................................................GAAATTGCTAATTGCGGCG.............................................................................................................................................................1911.00110000000000000000
.........................................................................TACGAGTATA---------AC--CG--CT----GAGC..............................................................................................................................................................................................................................2011.00100000100000000000
................................................................................................................................................................................................GCAGTCGGGGCTAGTACA..........................................................................................................................1811.00100000000001000000
.........................................................A-----------TTAGTACGAGTATA---------AC--CG--CT----GAGCTT............................................................................................................................................................................................................................2711.00100100000000000000
....................................................................................................................................................................................TTTGTGCCTACTGCAGTCGGG...................................................................................................................................2111.00100000000000001000
.....................................................................................................................................................................................................................................................................................GGAAGATCCGTGGCGGTGGAC..................................2111.00100000000000000001
.................................................................................................................................................................................................CAGTCGGGGCTAGTACAGGGT......................................................................................................................2111.00101000000000000000
droSec2
ATAT--------------------------ATCTATTG---------TACGAT----A-----------TTAGTACGAGTATA---------AG--CG--CT----GAGTTTAGTCGTAAAATCGCTGAAATAATG---------------TCGGCGAAATTGCTAATTGCGGCGCTTAGTTTGTGCCAACTGCAGTCGGGGCTAGTACAGGGTATATCATTATCGCTCGGAGATATAACCCTTTTCAATGTTAACTTCAAAACGCCAACTTTTTTGGGAAGATCCGTGGCGGTGGACAGCAATGTGCGGCTGGAGAACGATGTGGATCCTGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
................................................................................................................................................................................................................................................................................TTTTGGGAAGATCCGTGGCGG.......................................2112.0020200
................................................................................................................................................................................TTAGTTTGTGCCAACTGCAGT.......................................................................................................................................2111.0011000
..................................................................................................................................................................................AGTTTGTGCCAACTGCAGTCGGGGCT................................................................................................................................2611.0010100
............................................................................GAGTATA---------AG--CG--CT----GAGTTTAG..........................................................................................................................................................................................................................2111.0010100
...............................................................................................................................................................................................................................................................................................................TGTGCGGCTGGAGAACGATGTGGAT....2511.0010001
........................................................................................................................................................................................TGCCAACTGCAGTCGGGGCT................................................................................................................................2011.0010010
.......................................................................................................................................................................................GTGCCAACTGCAGTCGGGGCT................................................................................................................................2111.0010100
.....................................................................................................................................................................................................................................................................................................TGGACAGCAATGTGCGGCTGG..................2111.0011000
.....................................................................................................................................................................................................................................................................AACGCCAACTTTTTTGGGAAG..................................................2111.0011000
.................................................................................................................................................................................................CAGTCGGGGCTAGTACAGGGTT.....................................................................................................................2211.0011000
.................................................................................................................................................................................................................................................CTTTTCAATGTTAACTTCAAAACGCCAAC..............................................................2911.0011000
.........................................................A-----------TTAGTACGAGTATA---------AG--CG--CT----..................................................................................................................................................................................................................................2111.0010100
dm3
ATAT--------------------------ATCTATTG---------TATTAT----A--------ATAGTAGTACGAGTGTA---------AC--CG--CT----GAGATTAGTCGTAAAATCGGTGAAATAATG---------------TCGGTGAAATTGCTAATTGTAGCGCTTAGTTTGTGCCTCCTGCAGTCGGGCATCGTCGAGGGTATATCATTATCACTCGGAGATATAACCCTCTTTAATGTTAACTTCAAAACACCAACTTTTTTGGGAAGATCCGTGGCGGTGGATAGCAATGTGCGGTTGGAGAACGATGTGGATCCCASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
....................................................................................................................................................................................................................................................TTTAATGTTAACTTCAAAAC....................................................................2014.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................GTAGTACGAGTGTA---------AC--CG--........................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000
............................................................................GAGTGTA---------AC--CG--CT----GAGATT............................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................ATAGTAGTACGAGTGTA---------AC--CA--........................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................TGGCGGTGGATAGCAATGTGC........................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
...............................................................................................................................GAAATAATG---------------TCGGTGAAAT...........................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................AGTCGGGCATCGTCGAGGG.......................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................TGCGGTTGGAGAACGATGTGG......2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
.........................................................A--------ATAGTAGTACGAGTGTA---------................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000
.....................................................................................................................................................................AATTGTAGCGCTTAGTTTG....................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................TTTGGGAAGATCCGTGGCGGTGGATA.................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................CT----GAGATTAGTCGTAAAAT.................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
.....................................................................................................................................................................................................................................................................................................TGGATAGCAATGTGCGGTTGGAGA...............2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
...................................................................TAGTAGTACGAGTGTA---------AC--CG--C.......................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................GTCGGGCATCGTCGAGGGTA.....................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................GATAGCAATGTGCGGTTG...................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................TAACCCTCTTTAATGTTAAC............................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................ACCAACTTTTTTGGGAAGAT................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................TGAAATTGCTAATTGTAGCGC............................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................TCGGTGAAATAATG---------------TCGGTGA..............................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000
................................................................................................................................AAATAATG---------------TCGGTGAAATTGC........................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
.............................................................................................................................................................................................................................................................................................................AATGTGCGGTTGGAGAACG............1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
.................................................................................................................................................................................................................................................................................................................TGCGGTTGGAGAACGATGTGGAT....2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
...........................................................................................................................................................................................................................................................................AACTTTTTTGGGAAGATCCGTGGCG........................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................ATATCATTATCACTCGGAGA..................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................GAAGATCCGTGGCGGTGGATA.................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................TTTTTGGGAAGATCCGTGGC.........................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
...............................................................................................................................................................................................................CGAGGGTATATCATTATCACT........................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................ATGTGCGGTTGGAGAACGAT..........2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................AAGATCCGTGGCGGTGGATA.................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
...................................................................................................................................................................................................GTCGGGCATCGTCGAGGGTAT....................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................GGTGGATAGCAATGTGCGGTTG...................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
..............................................................................................................................................................................................................................................................................................................ATGTGCGGTTGGAGAACGATGTGGA.....2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................ATCCGTGGCGGTGGATAGCATC............................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................AACTTTTTTGGGAAGATCCGTGGC.........................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................T----GAGATTAGTCGTAAAATCGG..............................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
................................................................................................................................................................................................................................................................................TTTTGGGAAGATCCGTGGCGGT......................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
..............................ATCTATTG---------TATTAT----A--------ATAGTA....................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................CGGTGGATAGCAATGTGCGGTT....................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
...................................................................................................................................................................................................................................................................................................................CGGTTGGAGAACGATGTG.......1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................TTGGGAAGATCCGTGGCGGTGGAT..................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................GCAATGTGCGGTTGGAGAACGATGTG.......2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................AATGTGCGGTTGGAGAACGATGTG.......2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................TGGATAGCAATGTGCGGTTG...................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
.............................................................................................................................................................................................................................................................................................................AATGTGCGGTTGGAGAACGAT..........2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................AT----A--------ATAGTAGTACGAGTG...........................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
............................................................................................................................................................................................................................................TAACCCTCTTTAATGTTAACT...........................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................TGGATAGCAATGTGCGGTTGG..................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
..............................................................................................................................................................................................................................................................................................................ATGTGCGGTTGGAGAACGATGT........2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
...........................................................................................................................................................................................................................................................................................................GCAATGTGCGGTTGGAGAACGATG.........2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................AGCAATGTGCGGTTGGAGA...............1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................AGTACGAGTGTA---------AC--CG--CT----GAG...............................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................TGCGGTTGGAGAACGATGTG.......2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................TTTTTGGGAAGATCCGTGG..........................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................TAGTAGTACGAGTGTA---------AC--C...........................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................ATGTGCGGTTGGAGAACGATG.........2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................ATGTGCGGTTGGAGAACGA...........1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................CGGGCATCGTCGAGGGTA.....................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................CTTCAAAACACCAACTTT...........................................................1811.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................AGTACGAGTGTA---------AC--CG--CT----..................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................AATTGTAGCGCTTAGTTTGTG..................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
............................................................................................................................................................................................................................................................................ACTTTTTTGGGAAGATCCGTGGC.........................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................TGTGCGGTTGGAGAACGATGTG.......2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................GTGGATAGCAATGTGCGGTTG...................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
.......................................................................................................................................................................................................................................................................................................GATAGCAATGTGCGGTTGGAGA...............2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................TGTGCGGTTGGAGAACGA...........1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
................................................................................................................................AAATAATG---------------TCGGTGAAAGA..........................................................................................................................................................................1950.2010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
droEre2
ATAG--------------------------ATCTATTG---------TATAAT----A--------ATA------------TA---------CC--CG--CT----GAGCTCGGTCGTAAAACTGCTGAAATAATG---------------TCGGCAAAATTGCTAATTGTGGCCCTTAGTCTCTGCCTACTGCAGTCGGGCATCGTCGTGGCCATATCATTATCACTCGGAGACGTAACTCTGTTCAACGTTAACTTCAAAACACCGACCTTTTTGGGAAGAACTGTAGTGTTGGACAGCAATGTGCGGCTGGAGACCGATGTGGATCCCASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
....................................................................................................................................................................................................................................................................................................................GGCTGGAGACCGATGTGGAT....2011.0011000000
.....................................................................................................................................................................................CTCTGCCTACTGCAGTCGGG...................................................................................................................................2011.0011000000
.....................................................................................................................................................................................................................CATATCATTATCACTCGGA....................................................................................................1911.0010000100
...........................................................................................................AGCTCGGTCGTAAAACTGCT.............................................................................................................................................................................................................2011.0011000000
.....................................................................................................................................................................................CTCTGCCTACTGCAGTCGGGC..................................................................................................................................2111.0011000000
...................................................AT----A--------ATA------------TA---------CC--CG--CT----GAGCTCGG..........................................................................................................................................................................................................................2211.0010000100
................................................ATAAT----A--------ATA------------TA---------CC--CG--CT----GAGC..............................................................................................................................................................................................................................2111.0011000000
...............................................TATAAT----A--------ATA------------TA---------CC--CG--CT----GAG...............................................................................................................................................................................................................................2111.0010000100
droYak3
TA-T--------------------------ATCTATTG---------TATAAT----A--------ATA------------TA---------CA--CG--CT----GAGCTCAGTCGTAAAACTGCTGGAATAATG---------------TCGGCAAAATTGCTAATTGTGGCCCTTAGTCTGTGCCTACTGCAGTCGGGCATCGTCGAGGGTATATCATTGTCACTCGGAGACATAACCCTCTTCAACGTTAACTTCAAGACACCGACCTTTTTGGGAAGATCGGTGGCGGTGGACAGCAATGTGCGGCTGGAGAACGACGTGGATCCCASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..............................................................................................................................................................................................................................................................................................................ATGTGCGGCTGGAGAACGACGTGG......2417.00700000000007
.............................................................................................................................................................................................................................................................................CCTTTTTGGGAAGATCGGTGGCGG.......................................2415.00500000000005
....................................................................A------------TA---------CA--CG--CT----GAGCTCAGTC........................................................................................................................................................................................................................1911.00101000000000
...........................................................................................................................................................................................................................................................................GACCTTTTTGGGAAGATCGGT............................................2111.00101000000000
..........................................................................................................................................................................................................................................................GTTAACTTCAAGACACCGACCC............................................................2211.00100100000000
...............................................................................................................................GGAATAATG---------------TCGGCAAAA............................................................................................................................................................................1811.00110000000000
.......................................................................................................................AAACTGCTGGAATAATG---------------TCGG.................................................................................................................................................................................2111.00100000010000
................................................ATAAT----A--------ATA------------TA---------CA--CG--CT----GAGC..............................................................................................................................................................................................................................2111.00100010000000
................................................................................................................................................................................................................................................................................TTTTGGGAAGATCGGTGGCGGTG.....................................2311.00100000010000
..................................................AAT----A--------ATA------------TA---------CA--CG--CT----GAGCTC............................................................................................................................................................................................................................2111.00100000010000
........................................................................................................................AACTGCTGGAATAATG---------------TCGGCA...............................................................................................................................................................................2211.00100100000000
...................................................................................................................CGTAAAACTGCTGGAATAATG---------------TCGGC................................................................................................................................................................................2611.00100100000000
droEug1
TA-T--------------------------ATCTATC----------TATATT----C-----------ATAGTA------TA---------AA--TA--T---------TAAGTCGTAAAACTAGTGAA---ATG---------------TCAGCAAAATTGCTAATAGTTGCCCTAACTCTGTGCCTCATGCACTCCGGAATCGTCGATGGTCTATCACTGACGCTTGGAAATATCACCCTCTTCAACGTTAACTTCAAAACGCCGACCTTTCTGGGCCGATCCGTGGCGGTGGACAGTAATTTGCGGATAGAAAACGATGTGGATCCCASizeHit CountTotal NormTotal
No Reads
droBia1
ATAC--------------------------CTATAT-ATATTCATTGTGTA---------------TTA------------TA---------CA--CA--TT----AGGCGGAGCCGTAAAACTGGTGAA---ATG---------------TCGGCACATTTGCTAATATTGGCCCTAGGTCTGTGCCTACTGCAATCGGCAGTCGTCGCGGGTTTATCTCTCACGTTCGGCAACCTCACCCTGTTCAACGTCAACTTCAAGACGCCCACCATCTTGGGTCGATCCGTGGCCCTGGACAGCAATCTGCGGATCGAGAACGATGTGGATCCCASizeHit CountTotal NormTotal
No Reads
droTak1
ATAT--------------------------CTATCC-AAATTCATTGTGTA-------------------------------------------------TT----TAGTTGAGCCGTAAA------------ATG---------------TCGGCAAAATTGCTAATCGTTACCCTGAGTCTGTGCCTAATGCAGTCGGTAATTGTTGAGGGGATATCTTTGACGTTCGGAAACCTCACGCTCTTCAACGTGAACTTCAAGACGCCGACCTTTTTGGGTCGGTCAGTAGCAGTAGACAGCAACCTGAGGATCGAGACCGATGTGGATCCCASizeHit CountTotal NormTotal
No Reads
droEle1
TGA---------------------------ATTTATTA---------TACAAT----A--------ATA------------------TATA-CT--TA--TT----TAGTTAGGCAGTAAAATTGGTGAA---ATG---------------ACCGCAAAAATACTAGTAACGACCCTAACTCTGGCCCTACTGCAGTCGGGAATCGTTGAGGGTCTATCTTTGTCATTTGGAAACGTAACCCTCTTTAATGTTATGTTCAAATCGCCCAGTTTTCTGGGTCGCTCAGTGGCGGTGGACAGCAATTTGCGGATTGAAAACGATGTGGATCCCASizeHit CountTotal NormTotal
No Reads
droRho1
TA-T--------------------------ACTCATTA---------TACAAT----ATATATAAATTA------------TA---------CC--CA--TT----GGACTTAGCCGTAAAATTGGTGAA---ATG---------------ACTGCAAATTTGCTTGTGGCGACCCTAAGTCTGTGCCTACTGCAGTCGGGAATCGCAGAGGGTTTATCTCTGTCGTTTGGAAACATCACCCTCTTTAATGTGAACTTCAAGTCGCCCAGCTTCTTGGGTCGCTCAGTGGCGGTGGACAGCAATCTGCGGATCGAAAACGACGTGGATCCCASizeHit CountTotal NormTotal
No Reads
droFic1
CTAT--------------------------AATCATTA---------TACACAA---A--------ATA------------TT---------TA--CA--TA----CTGTTAAACAGTAAAATGGGTGAA---ATG---------------TCAGCAAGTTTGCTAATAGTTTTGCTAAGTGTGTGTCTACTGCAATCGGGAATCGCCGAGGGACTAACGTTAACGCTGGGAAACATCACCCTCTTCAATGTGAACTTTAAAACACCCACGTTTCTGGGTCGCTCAATTGCAGTGGACAGCAATTTGCGGATTGAACACGACGAGGATCCCASizeHit CountTotal NormTotal
No Reads
droKik1
GGAC--------------------------T-CTAATA---------TATA------------------------------TACACATTGTGCC--AA--A---------CCGGAGCTAAAATGAGGGAA---ATG---------------TCAGTGAATCTGTTCATCTCTGGCCTGTGTCTGTGCCTGCTGCAGACA---TCCGTCTCGGGACTTACCTTCTCCCTGGGAAACCTTACTTTGTTCAACGTAAACTTCAAGACACCCACGCTTCTGGGTCGATCCGTGGCCGTGGACAGCAATGTGCGGATCGAGAACGATGTGGATCCCASizeHit CountTotal NormTotal
No Reads
droAna3
TAAA--------------------------AATAA-G-------------------------------------------------------------------------ATAATTATAAAATGAGAGAA---ATG---------------TCTGGAACTATACTAACAATCGGTGTGTGCCTGTGCCTGCTACAACCCGAAATCGCCGCGAGTTTGTCATTTTCATGGGGCAACCTCTCCCTCTTTAATGTCAACTTCAAGACCCCCACAATCCTGGGGCGCTCCATTGCCATGGACAGTAATCTGCGGGTGGAAACCGAGGTGGATCCCASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.............................................................................................................................................................................................GCTACAACCCGAAATCGCCGCG.........................................................................................................................2212.002000002
....................................................................................................................ATAAAATGAGAGAA---ATG---------------TCTGGAA..............................................................................................................................................................................2411.001100000
..................................................................................................................................................................................................................................................................CAAGACCCCCACAATCCTGG......................................................2011.001010000
.......................................................................................................................................................................................................GAAATCGCCGCGAGTTTGTCATTTTCAT.........................................................................................................2811.001100000
..................................................................................................................................................................................................................GAGTTTGTCATTTTCATGG.......................................................................................................1911.001000001
...........................................................................................................................................................GAACTATACTAACAATCGGTGT...........................................................................................................................................................2211.001000001
............................................................................................................................................................................................................................................................CAACTTCAAGACCCCCACAATCCTG.......................................................2511.001100000
droBip1
AAAA--------------------------AATTA-TA---------TATAAT----T----------------------------------------------------------AAACAATGAGAGAA---ATG---------------TCGGGGAATATACTATTAGCCGTAGTGTGCCTGTGCCTTATACAAACCAGAATCGCAGCGAGTTTGTCATTTTCGTGGGACAACCTCTCCCTCTTCAATGTCAACTTCAAGACCCCCACCATCCTGGGGCGCTCCATTGCCATGGACAGCAATCTGAGGGTGGAGAACGAGGTGGATCCCASizeHit CountTotal NormTotal
No Reads
dp5
AACCCCCCCACGAGAGGGAGAACACACACTATATAGTA---------TATAG-----A------G--TA------------------TATA-CAG----AGACAGA-----------------TACAGAG---ATGTCATTATCA---TCGTCGGCGAGTCTGCTCATCGGCGCCCTATGCCTGTGCCTGGTCCAGCCGGAGATCAGCGCCGGTCTGGCAATGGTGCTGGGCAATGTCACCCTCTTCAACGTCCAATTCAAGTCCCCCAGCTGGCTGGGGCGCTCCATAGTCGCGGACAGTAACCTGCGGATAGAGAGCGATGTGGATCCCASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
......................................................................................................................................................................................................................................................................................................GGACAGTAACCTGCGGATAGAGA...............2312.0020200000000
.......................................................................................................................................................................................................................................................................................................................TAGAGAGCGATGTGGATCCC.2012.0020200000000
.........ACGAGAGGGAGAACACACACTATA...........................................................................................................................................................................................................................................................................................................2411.0010000100000
.........................................................................................................................................................................................................................GCAATGGTGCTGGGCAATGTCACC...........................................................................................2411.0010010000000
.....................................................................................................................................................................................................................................................................................................................GATAGAGAGCGATGTGGATCCC.2211.0010100000000
....................................................................................................................................................TCGTCGGCGAGTCTGCTCATCGGCGCCC............................................................................................................................................................2811.0010001000000
.....................................A---------TATAG-----A------G--TA------------------TATA-CAG----AGACAGA-----------------TACA.............................................................................................................................................................................................................2811.0010010000000
......................................................................................................................................................................................................................................................................................................GGACAGTAACCTGCGGATAGAGAGC.............2511.0010100000000
............................................................................................................................................TATCA---TCGTCGGCGAGTCTGCT.......................................................................................................................................................................2211.0010100000000
.....................................................................................................................................................................................CTGTGCCTGGTCCAGCCGGA...................................................................................................................................2011.0010100000000
........................................................................................................................................................................................................................................................................................................................AGAGAGCGATGTGGATCCCA2011.0010100000000
...............................................TATAG-----A------G--TA------------------TATA-CAG----AGACAGA-----------------TA...............................................................................................................................................................................................................2511.0010100000000
.................................................................................................................................G---ATGTCATTATCA---TCGTCGGCGAGT............................................................................................................................................................................2511.0010100000000
.....................................................................................................................................................................................................................................................................GTCCCCCAGCTGGCTGGGGCGCTCC..............................................2511.0010001000000
...................................................................................................................................................................................GCCTGTGCCTGGTCCAGCCG.....................................................................................................................................2011.0010100000000
...............................................................................................................................................................................................................................................................ATTCAAGTCCCCCAGCTGGCTGG......................................................2311.0010000100000
............................................................................................CAG----AGACAGA-----------------TACAGAG---AT.....................................................................................................................................................................................................1911.0011000000000
..CCCCCCCACGAGAGGGAGAACACA..................................................................................................................................................................................................................................................................................................................2411.0010100000000
.........................................................................................................................................................................................................GATCAGCGCCGGTCTGGC.................................................................................................................1811.0010100000000
........................................................................................ATA-CAG----AGACAGA-----------------TACAGA...........................................................................................................................................................................................................1980.1310100000000
droPer2
AACCCCCCAACGAGAGGGAGAACACACACTATATAGTA---------TATAG-----A------G--TA------------------TAGA-CAG----AGACAGA-----------------TACAGAG---ATGTCATTATCA---TCGTCGGCGAGTCTGCTCATCGGCGCCCTATGCCTGTGCCTGGTCCAGCCGGAGATCAGCGCCGGTTTGGCAATGGTGCTGGGCAATGTCACCCTCTTCAACGTCCAATTCAAGTCCCCCAGCTGGCTGGGGCGCTCCATAGTCGCGGACAGTAACCTGCGGATAGAGAGCGATGTGGATCCCASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..................................................AG-----A------G--TA------------------TAGA-CAG----AGACAGA-----------------.................................................................................................................................................................................................................2011.001000001
...........................................................................................................................................................................................................................................................................................................GTAACCTGCGGATAGAGAGC.............2011.001000001
...............................................................................................................................................................................................................................................................ATTCAAGTCCCCCAGCTGGCT........................................................2111.001010000
.....................................................................................................................................................................................................................................GGCAATGTCACCCTCTTCAAC..................................................................................2111.001010000
..................................................................................................................................................................................................................................................................................................................GCGGATAGAGAGCGATGTGGATCCCA2611.001010000
....................................................................................................................................................................................................................GTTTGGCAATGGTGCTGGGCAATGT...............................................................................................2511.001000001
.........................................................................................................................................CATTATCA---TCGTCGGCGAGTCTGCTC......................................................................................................................................................................2611.001010000
...................................................................................................................................................................................................................GGTTTGGCAATGGTGCTGGGC....................................................................................................2111.001010000
.........ACGAGAGGGAGAACACACAC...............................................................................................................................................................................................................................................................................................................2011.001010000
..............................................................................................................................................................................................................................................................................................ATAGTCGCGGACAGTAACCTGC........................2211.001010000
............................................................................................................................................................GAGTCTGCTCATCGGCGCCCT...........................................................................................................................................................2111.001010000
.............................................................................................................................................................................................................................................................................................................AACCTGCGGATAGAGAGCGATGTGGA.....2611.001010000
................................................................................................................................................A---TCGTCGGCGAGTCTGCTCATCGG.................................................................................................................................................................2411.001001000
..............................................................................................................................................................GTCTGCTCATCGGCGCCCTATGCC......................................................................................................................................................2411.001010000
...................................................................................................................................................................................................................................................CTTCAACGTCCAATTCAAGTCCCCC................................................................2511.001010000
..........CGAGAGGGAGAACACACA................................................................................................................................................................................................................................................................................................................1811.001010000
.....CCCAACGAGAGGGAGAACACA..................................................................................................................................................................................................................................................................................................................2111.001010000
.........................................................................................GA-CAG----AGACAGA-----------------TACAGA...........................................................................................................................................................................................................18130.081000001
droWil2
ATGT--------------------------CTTTACCA---------T---------------------------------------------------------------------------CATCGACATCA--------------TCGTCGAGTCGTCTGGTCTTTGGCTTGCTTTGCCTTGGCCTATTAACAAACGAGATTGGGGCAAATTTAACATTCATGTTTTCAAATCTAACATTATTCAATGTGGAATTCAAATCGCCCAGTTGGCTGGGCAGATCCATAGCCGTTAATAGCAATCTGAGGATTGAAAACGATGTCGATCCAASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
......................................................................................................................................................................................................................................................................................GCAGATCCATAGCCGTTAAT..................................2012.00200002
.....................................................................................................................................................................................................................................................................................................TTAATAGCAATCTGAGGAT....................1911.00110000
.................................................................................................................................................................................................................................................................................................................TGAGGATTGAAAACGATGTCGATCC..2511.00100010
..........................................................................................................................................................AGTCGTCTGGTCTTTGGC................................................................................................................................................................1811.00100001
....................................................................................................................................................................................................AACGAGATTGGGGCAAATTTAAC.................................................................................................................2311.00100001
............................................................................................................................................................................................................................................................................AGTTGGCTGGGCAGATCT..............................................1811.00100010
..........................................................................................................................................................................................................................................TCTAACATTATTCAATGTGGA.............................................................................2111.00110000
.............................................................................................................................................................................................ATTAACAAACGAGATTGGGGC..........................................................................................................................2111.00101000
droVir3
ATAT--------------------------ATATAT-A---------TATATA----T--------ATA------------------TATA-TATAAATAT-------------TTATATACATATAGGAAAAATGTCATTAGCGTTGGGTCTGAAGCAGCTGCTGCTTTTTGCACTGTGCCTTTGTCTGGTTCCACGCTCGAGCAATGCGGATTTATCATTTCTGTTCGGCAATATTACGCTTTTCAATGTGAACTTTAAGACCCCAGCTTTGCTGGGCCGTTCGATATCGGTGAAGAGCAATGTGAATATTGATAATAGTGTGGATCCCASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.........................................................................................................................................................................................................................................................................................GTTCGATATCGGTGAAGA.................................1813.003000000002100000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................CAATGTGAACTTTAAGACCCCA................................................................2212.002000000000000000000000000000002000000000000000000000000000000000
..........................................................................................................................................ATTAGCGTTGGGTCTGAAGC..............................................................................................................................................................................2012.002000000000000000000002000000000000000000000000000000000000000000
...............................................................................................................................................................................CTGTGCCTTTGTCTGGTTCCA........................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000001000
..............................................................................................................................................................................................................ATGCGGATTTATCATTTCT...........................................................................................................1911.001000000000000000000000000001000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................ACCCCAGCTTTGCTGGGCCGTTCGATATCGGTGAAGAGC...............................3911.001000000000000000000000000000000000000000000000000000000000010000
.............................................................................................................................................AGCGTTGGGTCTGAAGCAG............................................................................................................................................................................1911.001000000001000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................GTGAATATTGATAATAGTGTGGAT....2411.001000000000000000000001000000000000000000000000000000000000000000
.......................................................................................................................TACATATAGGAAAAATGTC..................................................................................................................................................................................................1911.001000000000000000000000000000000000000000000000000000000000000100
.....................................................................................................................................................................................................................................................................................GGCCGTTCGATATCGGTGAAGAGC...............................2411.001000000000000000000000000000000000000000000000000000000000010000
...............................................................................................................................................................................................................................................................CTTTAAGACCCCAGCTTTGCTGGGCCGTTCGATATCGGT......................................3911.001000000000000000000000000000000000000000000000000000000000010000
......................................................................................................................................................................................................................................................................................................................ATTGATAATAGTGTGGAT....1811.001000000000000010000000000000000000000000000000000000000000000000
......................................................................................................................................................................................TTTGTCTGGTTCCACGCTCGA.................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000001000
.............................................................................................................................................................................................................AATGCGGATTTATCATTT.............................................................................................................1811.001000000000000000000000000000000000000000000000000000000000001000
.........................................................................................................................................................................................GTCTGGTTCCACGCTCGAGCAATGCGGAT......................................................................................................................2911.001000100000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................AGCGTTGGGTCTGAAGCAGCTGCTGC.....................................................................................................................................................................2611.001000100000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................CTTTAAGACCCCAGCTTTGCTGG......................................................2311.001000000001000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................GGCCGTTCGATATCGGTG.....................................1811.001100000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................TTTTCAATGTGAACTTTAAGACCC..................................................................2411.001000000000000000000000000000001000000000000000000000000000000000
........................................................................................................................................................................................TGTCTGGTTCCACGCTCGA.................................................................................................................................1911.001000000000000000100000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................ATCGGTGAAGAGCAATGTGAATATTGAT................2811.001000000000000000000000000000000000000000000000000000000000010000
.............................................................................................................................................................................................................................................................................................GATATCGGTGAAGAGCAATGTGAAT......................2511.001000000000000000100000000000000000000000000000000000000000000000
..................................................................ATA------------------TATA-TATAAATAT-------------TTATA.....................................................................................................................................................................................................................21150.071000000000000000001000000000000000000000000000000000000000000000
.........................................................T--------ATA------------------TATA-TATAAATAT-------------TTAT......................................................................................................................................................................................................................21200.051000000000000000000100000000000000000000000000000000000000000000
droMoj3
TAAT--------------------------ATATATTA---------GCTAT-----A------C--TT------------------CCTA-TAT----ATTTATA-----------------TACAGAAAAAATGTTATTA------------AAGCCGTTTGTGCTATTTGTCGTGTGCCTGTGTCTGGCTCCTCCGGAGAGCCAAGCGGATTTATCATTTATCTTTGGAAATATTTCGCTATTCAATTTGAACTTCAAGACGCCAAAACTGCTGGGGCGCTCCATAACTGTAAACAGTAATGTGAAAATTGATAGCGATGTGGACCCCASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.......................................................................................................................................................................................................................................................................................................AACAGTAATGTGAAAATTGATAGC.............2411.001000010
droGri2
CTCC--------------------------CAGTACTA---------TATAACCTATA-----------CTAGT-------------------------------------------------ACT---AAAAATGTCATTAAATTTGCGCTTGAGGCAGCTACTGCTTTTTACTCTATGCCTTTGTCTTGTTCCACTGGAGAGCAATGCGGATTTATCATTTCTGCTTGGAAATATTACGCTTTTCAATGTGAACTTCAAGTCTCCCAAGTGGCTTGGTCGCTCCATATCTGTGCAGAGCAATTTGCGTATTGACACTGAAGTCGATCCCASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
.....................................................................................................................................................................................................................TTTATCATTTCTGCTTGGAA...................................................................................................2011.00110
.................................................................................................................................................................................................................................................................................................................TGCGTATTGACACTGAAGTC.......2011.00101

Generated: 05/18/2015 at 07:52 PM