dsi_15979

CDS [3l_8575160_8575233_+]; exon [3l_8575160_8575761_+]; intron [3l_8574246_8575159_+]

Name	Class	Family	Strand
AT_rich	Low_complexity	Low_complexity	+

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## CATGGAAAAACTTACTCTTAAAAGCCTTGAAAGTTTTATATATACATTCGATTTGCATGCAATTCAAAGGATATTCAAAAATTCAGGCAACTAACCTGCATGCCCTTTAGACCTAACATTGCATGACTGCCAATGCCTAACTAAATACATATATACTATACTTTTGAAGTCTCTGTTATAATATTTAATATATTTTGCAGTACGTCGCACGCTGAAAAACGGTCTTACCGAGGAGGAGAAACAGCACGTG ************************************************.....((((((((....(((..........((.((((.......)))).))..........)))...)))))))).((((.((........((((((..((((.((...((((...))))....)))))).)))))).......))))))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M024 male body	M025 embryo	O001 Testis	M023 head	SRR618934 dsim w501 ovaries	SRR553486 Makindu_3 day-old ovaries	SRR553488 RT_0-2 hours eggs
.ATGGAAAAACTTACTCTTAAAAGCCT...............................................................................................................................................................................................................................	26	0	1	2.00	2	0	2	0	0	0	0	0
.....................................................................................................................................................................................................CATTACGTCGCACGCTGAAAAAC..............................	23	1	1	2.00	2	0	2	0	0	0	0	0
.....................................................................................................................................................................................................CATTACGTCGCACGCTGAAAAACG.............................	24	1	1	1.00	1	1	0	0	0	0	0	0
...........................................................................................................................................................................................................................CGGTCTTACCGAGGAGGA.............	18	0	1	1.00	1	0	0	1	0	0	0	0
........................................................................................................................................................................................................TACGTCGCACGCTGAAAAACGGTCT.........................	25	0	1	1.00	1	1	0	0	0	0	0	0
......................................................................................................................................................................................................TGTACGTCGCACGCTGAAA.................................	19	1	1	1.00	1	0	0	0	1	0	0	0
..........................................................................................................................................................................................................................ACGGTCTTACCGAGGAGGA.............	19	0	1	1.00	1	0	0	0	0	1	0	0
.....................................................................................................................................................................................................CATTACGTCGCACGCTGAAAAACGGTCC.........................	28	2	1	1.00	1	1	0	0	0	0	0	0
..................................................................................................................................................................................................TTTTTGTACGTCGCACGCTGAAA.................................	23	3	1	1.00	1	1	0	0	0	0	0	0
.....................................................................................................................................................................................................................GAAAAACGGTCTTACCGAG..................	19	0	1	1.00	1	0	0	1	0	0	0	0
..............................................................................................................................................................................................................................TCTTACCCAGGAGGA.............	15	1	7	0.14	1	0	0	0	0	0	0	1
.............................................................................................................................................................................................................CGCACGCTGAAAGAC..............................	15	1	9	0.11	1	0	0	0	0	0	1	0
...................................................................................................................TCATTGCATGACTCCCGAT....................................................................................................................	19	3	15	0.07	1	0	0	0	0	0	1	0

GTACCTTTTTGAATGAGAATTTTCGGAACTTTCAAAATATATATGTAAGCTAAACGTACGTTAAGTTTCCTATAAGTTTTTAAGTCCGTTGATTGGACGTACGGGAAATCTGGATTGTAACGTACTGACGGTTACGGATTGATTTATGTATATATGATATGAAAACTTCAGAGACAATATTATAAATTATATAAAACGTCATGCAGCGTGCGACTTTTTGCCAGAATGGCTCCTCCTCTTTGTCGTGCAC ************************************************.....((((((((....(((..........((.((((.......)))).))..........)))...)))))))).((((.((........((((((..((((.((...((((...))))....)))))).)))))).......))))))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M053 female body	SRR553488 RT_0-2 hours eggs	O001 Testis	SRR553485 Chicharo_3 day-old ovaries
..............GAGAATCTTCAGAACTTTCAA.......................................................................................................................................................................................................................	21	2	1	1.00	1	1	0	0	0
...............................................................................................................................................................................AATATTATAAACTATATAAA.......................................................	20	1	14	0.14	2	0	0	2	0
...................................................................................................................................................................................TTATAAATTATATTAATCGCCAT................................................	23	3	9	0.11	1	0	1	0	0
....................................................................................................................................TACGGATTGATATAT.......................................................................................................	15	1	20	0.10	2	0	1	0	1
...............................TCAATATAGATATGTAAGGTAAA....................................................................................................................................................................................................	23	3	14	0.07	1	0	0	0	1

Species	Coordinate	ID	Alignment
droSim2	3l:8574960-8575209 +	dsi_15979	CATGGA-----------------------------AAAAC------------------TTACTCTTA--AAAGCCTTGA---------AAGTTTTATATATAC----A-TTCGATTTGCATGCAATTCAAAGGATATTC-------------------------------------------AAAAA-TTCAG-----GCAACTAA-----CCTGCATGCCCTTTAGACCTAACAT-TGCATGACTGCCAATGCCTAACTAAATACA--------------------------------------------TATATACTA--------------------------------------------------------T-------------ACTT-TTGAAGT----------CTCTGTTATAA--------------------T-----AT-TT--------------AATA------T-ATTTTGCAGTACGTCGCACGCTGAAAAACGGTCTTACCGAGGAGGAGAAACAGCACGTG
droSec2	scaffold_0:1062520-1062769 +		CATGGA-----------------------------AAAAC------------------TTACTCTTA--AAAGCCTTGA---------AAGTTTTTTATATAC----A-TTCGGTTTGCATGCAATTCAAAGGATATTC-------------------------------------------AAAAA-TTCAG-----GCAACTAA-----CCTGCATGCCCTTTAGACCTAACAT-TGCATGACTGCCTATGCCTAACTAAATACA--------------------------------------------TATATACTA--------------------------------------------------------T-------------ACTT-TTGAAGT----------CTCTGTTATAA--------------------T-----AT-TT--------------AATA------T-ATTTTGCAGTACGTCGCACGCTGAAAAACGGTCTTACCGAGGAGGAGAAACAGCACGTG
dm3	chr3L:8791042-8791270 +		CATGGA-----------------------------AAAAC------------------TTACTC--------------------------------TATATAT----A-TTCAATTTGCATGCAATTCAAAGGATATTC-------------------------------------------AAAAC-TTGAG-----GCAACTAA-----CCTGCATGCCCTTTAGACCTAACAT-TGCATGACTGCCTATGCCTAACTAAATACA--------------------------------------------TATATACTA--------------------------------------------------------T-------------ACTT-TTGAAGA----------CTCTGTTATAA--------------------T-----AT-TT--------------AATA------T-ATTTTGCAGTACGTCGCACGCTGAAAAACGGTCTGACCGAGGAGGAGAAACAGCACGTG
droEre2	scaffold_4784:5254185-5254428 -		CATGGT-----------------------------AAAAC------------------CCAAACTTG--AAAGCCCTGA---------AAGTTTTATATATAA----T-ATACATTTGCATGTGGTTCAACGTATATTC-------------------------------------------CAAAA-TTCAG-----GCAACTAA-----CCAGCATGCCCTACAGAGTTAACAT-TGAATGATAGCCTATGCC-AACTAATTAAA--------------------------------------------GA--TCGTA--------------------------------------------------------T-------------ACCT-CTA---T----------CTCTGTTATAA--------------------T-----AT-TC--------------AATG------T-ATTTTGCAGTACGTCGCACGCTGAAAAACGGTCTGACCGAGGAGGAGAAACAGCACGTG
droYak3	3L:3123762-3123999 -		CATGGG-----------------------------AAAAC------------------TTAATCTAA--AAAGCCTGGA---------AAGTTTTGTATATAA----A-ACACATTTGCATG----------GATATTC-------------------------------------------CAAAA-TTCAG-----GCAACTAA-----CCAGCATGCCCTTTAGAGCTAACAT-TGAATGCAAGCCGATGCCCAACTAAATACA--------------------------------------------TATTT--TA--------------------------------------------------------T-------------ACCT-TTTAAGT----------ATTTATTATAA--------------------T-----AT-TT--------------AATG------T-GTTTTGCAGTACGTCGCACGCTGAAAAACGGTCTGACCGAGGAGGAGAAACAGCACGTG
droBia1	scf7180000300910:2420568-2420805 -		CGC-------------------------------------------------------CCCG-----GC----------CTGATAACCAATTTGTAAATATGA----A-ATGCATTTGCATGTGGCTTAACGGATTTTC-------------------------------------------AAAAA-CACAG-----GCCACTAA-----CCAGCATGACATATAGAC-TAACCC-AGCATGACAGCCGTCGCATAACTAAAACATAAAATAA---------------------------------------------A--------------------------------------------------------ATTT-------------ATTCT---T----------TTGTTTTTTAA--------------------TGG---CTT-G----------TATA--AA------T-ATTTTACAGTACGTCGCACGCTGAAAAACGGTCTGACCGAGGAGGAGAAACAGCACGTG
droTak1	scf7180000415356:431889-432119 -		CATGGA-----------------------------TAAA--------------------------------------------------ATTTGTAAATATAA----T-TTGCATTTGCATGTGGCCTAACGGATTTTC-------------------------------------------AAAAA-TACAG-----GCAACTAA-----CCAGCATGACCTATAGACCTAACAT-TGAATGACTGCCTACGCCTAACTAAATCCTTATA-AG---------------------------------------------T--------------------------------------------------------ATTAT-------------CTT-------------------AAATTAT--------------------TAT---AAA-T----------CATTAATATATCCCT-GTTTTACAGTACGTCGCACGCTGAAAAACGGTCTGACCGAGGAGGAGAAACAGCATGTG
droEle1	scf7180000490564:11089-11330 +		CATGGA-----------------------------AAAA--------TGGGTCGGC--TTTT-----GC----------CTACACACCTATTTGTATATATAA----A-TTGCATTTGCATGTGGCCTAACGGATTTTC-------------------------------------------AAAAA-TAAAT-----G-------------CTGCATGACCTAAAGACTTAACAT-AGAATGACAGCC------TAACTAAATCATTGTT-GT---------------------------------------------A--------------------------------------------------------AGTCT-----------TTTTGA---T----------TTTTATTACAA--------------------CAC---ATT-T----------GATT--CA------T-GTTTTGCAGTGCGTCGCACGCTGAAGAACGGTTTGACCGAAGAGGAAAAACAGCACGTG
droRho1	scf7180000766314:18960-19192 +		CATGGG-----------------------------TAAA-------ATGGGT-----------C-------------AA---------AATTTGTAAATATAT----T-TTGCATTTGCATGTGGCTTAACGGATTTTC-------------------------------------------TAAAA-TACAA-----GCAACTAA-----TCAGCATGACCTAAACATTTAACAT-AGAATGACAGCC------TAACTAAATACTTACT-AT---------------------------------------------A--------------------------------------------------------ATTC-------------TTTGA---T----------TTGTTTTGTAA--------------------TAT---ATT-T----------GATT--CA------T-GTCTTACAGTGCGGCGCACGCTGAAGAATGGTTTGACCGAAGAGGAAAAACAGCACGTG
droFic1	scf7180000452451:93702-93954 -		CATGGGTCTA-------------------------TAAAC------------------TTTATT-----ATGGCC---A---------AAGTTGTAAATATAA----A-TGGCATTTGCATGTGGCTTAACGGATTTTC-------------------------------------------TGAAAATACAG-----GCAACTAA-----TCAGCATGACCTAAACACCTAACAT-AGAATGACCTAATATGCCTAA----AAACTTGTT-AT---------------------------------------------A--------------------------------------------------------ATCTTATTT----------AAA---A-AATAT----ATATATTTTAA--------------------TAT---ATT-T----------AATT--AA------T-GTTTTACAGTACGTCGGACTTTAAAGAACGGTCTGACCGAGGAGGAGAAACAGCACGTG
droKik1	scf7180000302474:170420-170678 -		CATGGG-----------------------------AAAA-------ATGGAT-----------CTAAAC----------CTA-ATACCGATTTGTAAATATATATAAA-CTTTTGTAGCACGTTT-CTAACGGATTTTC-------------------------------------------AAAAA-TATCT-----GCCACTAATTTGACCTGCATGACCCAAACATCTAACAC-GGCATGTTGGCCACA----TACTAAATTA-------------------------TA------------------TTTGTCATA--------------------------------------------------------T-------------CCTT-TTA---TAAA-------TTTTAAAATAA--------------------TAT---TAT-A----------CATT--CA------T-ATTTTACAGTGCGTCGCACGCTGAAAAACGGTCTGACCGACGAGGAGAAACAGCACGTG
droAna3	scaffold_13337:7856467-7856708 -		A-TGGC-----------------------------TTCAT------------------TTT---------------------TCCATCTTTTTGTAAATATAT----T-TCCGGATGGCATGTAAAATAATATATCTTC-------------------------------------------TAAAA-A--TG-----GCAACTAA-----ATGGCATGTTTCATACACTTAACCC-AGCATGGCAGACTCCGCCTAACAAAACAATTAAT-AA---------------------------------------------T--------------------------------------------------------ATTTT-------------ATTA---TATA-------CATATAATTAA--------------------TAT---AAT-T----------TATTTGTA------T-ATTTTACAGTGCGTCGCACGCTGAAGAACGGTCTGACCGACGAGGAGAAACAGCATGTG
droBip1	scf7180000396541:11098-11335 -		CTTTAT-----------------------------TTT--------------------------------------------TCCACCATTTTGTAAATATAT----TTTCCGTAAAGCATGAATTATAACATATTTTC-------------------------------------------TAAAA-AAAAG-----GCAACTAA-----ACGGCATGCCTCATACATTTAACAC-TGCATGGCAGACTCCGCCTAACCATCCAATTACC-AA---------------------------------------------T--------------------------------------------------------GTTT-------------TTAAA---A----------CTTAAAATTAA--------------------TAT---AAA-T----------AATTAAAA------T-ATTTTACAGTGCGTCGCACGCTGAAGAACGGTCTGACCGACGAGGAGAAACAGCATGTG
dp5	XR_group8:8791776-8792030 -		CATGCG-----------------------------AATA----AAAATGGATCC--CA-------TA--AATGC------------------------TATAA----A-TTTCCTGGGCATGATT-GTAACAGA----C-------------------------------------------AGATA-TTCAG-----GCCTATAA-----AACGCATGTCTCGTACACCTAACATCTGCATGAAAGCCTC-----AACTTAAAATA------------------------TATGAGA--------AGAATTGTTTACTT--------------------------------------------------------T-------------AC----TGAATT------TTGT-ACTGAAATAA--------------------T-----AT-TCTAATAATTTA-TTG--TA------TAATTTTTCAGTGCGTCGCACGCTGAAGAACGGTCTGACCGATGAGGAGAAACAACATGTG
droPer2	scaffold_50:414390-414644 +		CATGCG-----------------------------AATA----AGAATGGATCC--CA-------TA--AATGC------------------------TATAA----A-TTTCCTGGGCATGATT-GTAACAGA----C-------------------------------------------AGATA-TTCAG-----GCCTATAA-----AACGCATGTCTCGTACACCTAACATCTGCATGAAAGCCTC-----AACTTAATATA------------------------TATGAGA--------AAAAATGTTTACTT--------------------------------------------------------T-------------AT----TGAATT------TTGT-ACTGAAATAA--------------------T-----AT-TCTAATAATTTA-TTG--TA------TAATTTTTCAGTGCGTCGCACGCTTAAGAACGGTCTGACCGATGAGGAGAAACAACATGTG
droWil2	scf2_1100000004511:8046176-8046482 -		CATACA-----------------------------CAAA-------ACGT----------A-TA-----TATGTATATAC--------AATTTTTGT--TTTC----G-TTTCAATTGCATGTTC-TTAACCGATTTTT-------------------------------------------CAAAA-TCAAAACTGCGCCACTAA-----AACGCATGACACCGACACACA-CAC-ACACACACAGA------------------------------------------------GACAGAGACTAATAACGCTTGCTTTTTGCCCCCGCAATCCAATCTAATCATTGAACTTGTATAGTTAAACATT---------CCTATTTATAAAGAAT-ATGGACT----------GATCATAATCA--------------------T-----AT-TT-----------ATA--TA------TATTTTTTTAGTGCGACGCACGCTGAAGAATGGTCTGACCGATGAGGAGAAACAGCATGTG
droVir3	scaffold_13049:6464618-6464679 +		TGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTTTGCAGTGCGTCGAACGCTGAAGAACGGTCTCACCGATGAGGAGAAGCAGCATGTG
droMoj3	scaffold_6680:4778619-4778853 +		CGAGGA-----------------------------GATGTTGGCAAATGGCT----------------------CTGGCC--------AAGTTTTGTTTATGC----G-C-----------CTGGCTGAA-----ATCCCAGTCGATT----------------------------------TTATT-TATAA-----GCATTTAC-----TAAGCATGCGCCTAACTCT---GAT-TGCATGAGAGAGAA-----ATCTGAAGATT---------------------------------------------------------------------------------TAATCATTTTACCTAAACAATTTCATTAATTT-------------TTGC--------------------------------------------------------------------TTT--TG------TGTTTTTGCAGTGCGCCGCACGCTGAAGAACGGCCTCAGCGAGGAGGAGAAACAGCACGTG
droGri2	scaffold_15110:6292529-6292832 -		CCGAGTTCCATTTGATTTCGTCTAATTCTGAACTGGATGTCTACAAATGGAGCT--CA-------C-----------------ACA--CAGTTTTGTT--TGC----G-C----CTCGCTCGATACCCAGTTGATCTTT---------TTAAATGCAAAGCATGCTCCTAACTCAAGTTTTCCAAAA-CA--C-----GTCACTAA--------------------------------------------------------ATACGCATG-ATAATCGCACATAAAATTATTTCAG--------------------------------------------------------------------------------TCT------------TT-AAA---CAAG-------TTTTTGAATAACTTGAAATCACAAAATTTGATGGTTGTTT-T----------GATT--TG------TGTGTTTGCAGTGCGTCGAACGCTGAAGAACGGTCTCACCGATGAGGAGAAACAGCACGTG

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

CATGGA-----------------------------AAAAC------------------TTACTCTTA--AAAGCCTTGA---------AAGTTTTATATATAC----A-TTCGATTTGCATGCAATTCAAAGGATATTC-------------------------------------------AAAAA-TTCAG-----GCAACTAA-----CCTGCATGCCCTTTAGACCTAACAT-TGCATGACTGCCAATGCCTAACTAAATACA--------------------------------------------TATATACTA--------------------------------------------------------T-------------ACTT-TTGAAGT----------CTCTGTTATAA--------------------T-----AT-TT--------------AATA------T-ATTTTGCAGTACGTCGCACGCTGAAAAACGGTCTTACCGAGGAGGAGAAACAGCACGTG	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
.ATGGA-----------------------------AAAAC------------------TTACTCTTA--AAAGCCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGTCTTACCGAGGAGGA.............	18	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGTCGCACGCTGAAAAACGGTCT.........................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGGTCTTACCGAGGAGGA.............	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAACGGTCTTACCGAG..................	19	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

CATGGA-----------------------------AAAAC------------------TTACTCTTA--AAAGCCTTGA---------AAGTTTTTTATATAC----A-TTCGGTTTGCATGCAATTCAAAGGATATTC-------------------------------------------AAAAA-TTCAG-----GCAACTAA-----CCTGCATGCCCTTTAGACCTAACAT-TGCATGACTGCCTATGCCTAACTAAATACA--------------------------------------------TATATACTA--------------------------------------------------------T-------------ACTT-TTGAAGT----------CTCTGTTATAA--------------------T-----AT-TT--------------AATA------T-ATTTTGCAGTACGTCGCACGCTGAAAAACGGTCTTACCGAGGAGGAGAAACAGCACGTG	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGGTCTTACCGAGGAGGAGAAA.........	23	1	2.00	2	0	2	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCTTACCGAGGAGGAGA...........	19	1	1.00	1	0	1	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTACCGAGGAGGAGAAACA.......	20	1	1.00	1	0	1	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGGTCTTACCGAGGAGGAGA...........	23	1	1.00	1	0	0	1	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGGTCTTACCGAGGAGGAGAA..........	22	1	1.00	1	0	1	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAACGGTCTTACCGAGGAGGAGAAA.........	27	1	1.00	1	1	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGGTCTTACCGAGGAGGAGA...........	21	1	1.00	1	1	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGGTCTTACCGAGGAGGAGAAAC........	25	1	1.00	1	0	1	0	0

dm3

CATGGA-----------------------------AAAAC------------------TTACTC--------------------------------TATATAT----A-TTCAATTTGCATGCAATTCAAAGGATATTC-------------------------------------------AAAAC-TTGAG-----GCAACTAA-----CCTGCATGCCCTTTAGACCTAACAT-TGCATGACTGCCTATGCCTAACTAAATACA--------------------------------------------TATATACTA--------------------------------------------------------T-------------ACTT-TTGAAGA----------CTCTGTTATAA--------------------T-----AT-TT--------------AATA------T-ATTTTGCAGTACGTCGCACGCTGAAAAACGGTCTGACCGAGGAGGAGAAACAGCACGTG	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGGTCTGACCGAGGAGGAGAAACA.......	25	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGTCTGACCGAGGAGGAG............	19	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTGACCGAGGAGGAGA...........	18	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCTGAAAAACGGTCTGACCATC..................	23	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGTCTGACCGAGGAGGAGAAA.........	22	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGGTCTGACCGAGGAGGAGAAACA.......	26	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCTGACCGAGGAGGAGAAACA.......	23	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCTGACCGAGGAGGAGA...........	19	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCTGAAAAACGGTCTGACC.....................	20	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACCGAGGAGGAGAAAC........	18	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTGACCGAGGAGGAGAAAC........	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................CATGCAATTCAAAGGATATTC-------------------------------------------AAAAC-T..............................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGGTCTGACCGAGGAGGAG............	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGGTCTGACCGAGGAGGAGACC.........	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGTCTGACCGAGGAGGATC...........	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGTCTGACCGAGGAGGAGAA..........	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAACGGTCTGACCGAGGAGGAGAA..........	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAACGGTCTGACCGAGGAGGAG............	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGTCTGACCGAGGAGGAGATC.........	22	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCTGACCGAGGAGGAT............	18	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGGTCTGACCGAGGAGGAGATC.........	23	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

CATGGT-----------------------------AAAAC------------------CCAAACTTG--AAAGCCCTGA---------AAGTTTTATATATAA----T-ATACATTTGCATGTGGTTCAACGTATATTC-------------------------------------------CAAAA-TTCAG-----GCAACTAA-----CCAGCATGCCCTACAGAGTTAACAT-TGAATGATAGCCTATGCC-AACTAATTAAA--------------------------------------------GA--TCGTA--------------------------------------------------------T-------------ACCT-CTA---T----------CTCTGTTATAA--------------------T-----AT-TC--------------AATG------T-ATTTTGCAGTACGTCGCACGCTGAAAAACGGTCTGACCGAGGAGGAGAAACAGCACGTG	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGGTCTGACCGAGGAGGAGAAACA.......	27	1	1.00	1	0	0	0	0	1	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAACGGTCTGACCGAGGAGGAGAAACA.......	28	1	1.00	1	0	0	0	0	1	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGGTCTGACCGAGGAGGAG............	21	1	1.00	1	0	0	0	0	1	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGAAAAACGGTCTGACCGAGGA................	24	1	1.00	1	1	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGGTCTGACCGAGGAGGAGA...........	22	1	1.00	1	0	0	0	0	1	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACCGAGGAGGAGAAAC........	18	1	1.00	1	0	0	0	0	0	1	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAACGGTCTGACCGAGGAGGAG............	25	1	1.00	1	0	0	0	0	1	0	0

droYak3

CATGGG-----------------------------AAAAC------------------TTAATCTAA--AAAGCCTGGA---------AAGTTTTGTATATAA----A-ACACATTTGCATG----------GATATTC-------------------------------------------CAAAA-TTCAG-----GCAACTAA-----CCAGCATGCCCTTTAGAGCTAACAT-TGAATGCAAGCCGATGCCCAACTAAATACA--------------------------------------------TATTT--TA--------------------------------------------------------T-------------ACCT-TTTAAGT----------ATTTATTATAA--------------------T-----AT-TT--------------AATG------T-GTTTTGCAGTACGTCGCACGCTGAAAAACGGTCTGACCGAGGAGGAGAAACAGCACGTG	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGTCGCACGCTGAAAAACGGTCT.........................	24	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGTCTGACCGAGGAGGAGAAAC........	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGGTCTGACCGAGGAGGAGA...........	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACCGAGGAGGAGAAACA.......	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACGCTGAAAAACGGTCTGACCGAGGA................	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCTGACCGAGGAGGAGAA..........	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGGTCTGACCGAGGAGGAGAAAC........	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0

droBia1

CGC-------------------------------------------------------CCCG-----GC----------CTGATAACCAATTTGTAAATATGA----A-ATGCATTTGCATGTGGCTTAACGGATTTTC-------------------------------------------AAAAA-CACAG-----GCCACTAA-----CCAGCATGACATATAGAC-TAACCC-AGCATGACAGCCGTCGCATAACTAAAACATAAAATAA---------------------------------------------A--------------------------------------------------------ATTT-------------ATTCT---T----------TTGTTTTTTAA--------------------TGG---CTT-G----------TATA--AA------T-ATTTTACAGTACGTCGCACGCTGAAAAACGGTCTGACCGAGGAGGAGAAACAGCACGTG	Size	Hit Count	Total Norm	Total
No Reads

droTak1

CATGGA-----------------------------TAAA--------------------------------------------------ATTTGTAAATATAA----T-TTGCATTTGCATGTGGCCTAACGGATTTTC-------------------------------------------AAAAA-TACAG-----GCAACTAA-----CCAGCATGACCTATAGACCTAACAT-TGAATGACTGCCTACGCCTAACTAAATCCTTATA-AG---------------------------------------------T--------------------------------------------------------ATTAT-------------CTT-------------------AAATTAT--------------------TAT---AAA-T----------CATTAATATATCCCT-GTTTTACAGTACGTCGCACGCTGAAAAACGGTCTGACCGAGGAGGAGAAACAGCATGTG	Size	Hit Count	Total Norm	Total
No Reads

droEle1

CATGGA-----------------------------AAAA--------TGGGTCGGC--TTTT-----GC----------CTACACACCTATTTGTATATATAA----A-TTGCATTTGCATGTGGCCTAACGGATTTTC-------------------------------------------AAAAA-TAAAT-----G-------------CTGCATGACCTAAAGACTTAACAT-AGAATGACAGCC------TAACTAAATCATTGTT-GT---------------------------------------------A--------------------------------------------------------AGTCT-----------TTTTGA---T----------TTTTATTACAA--------------------CAC---ATT-T----------GATT--CA------T-GTTTTGCAGTGCGTCGCACGCTGAAGAACGGTTTGACCGAAGAGGAAAAACAGCACGTG	Size	Hit Count	Total Norm	Total
No Reads

droRho1

CATGGG-----------------------------TAAA-------ATGGGT-----------C-------------AA---------AATTTGTAAATATAT----T-TTGCATTTGCATGTGGCTTAACGGATTTTC-------------------------------------------TAAAA-TACAA-----GCAACTAA-----TCAGCATGACCTAAACATTTAACAT-AGAATGACAGCC------TAACTAAATACTTACT-AT---------------------------------------------A--------------------------------------------------------ATTC-------------TTTGA---T----------TTGTTTTGTAA--------------------TAT---ATT-T----------GATT--CA------T-GTCTTACAGTGCGGCGCACGCTGAAGAATGGTTTGACCGAAGAGGAAAAACAGCACGTG	Size	Hit Count	Total Norm	Total
No Reads

droFic1

CATGGGTCTA-------------------------TAAAC------------------TTTATT-----ATGGCC---A---------AAGTTGTAAATATAA----A-TGGCATTTGCATGTGGCTTAACGGATTTTC-------------------------------------------TGAAAATACAG-----GCAACTAA-----TCAGCATGACCTAAACACCTAACAT-AGAATGACCTAATATGCCTAA----AAACTTGTT-AT---------------------------------------------A--------------------------------------------------------ATCTTATTT----------AAA---A-AATAT----ATATATTTTAA--------------------TAT---ATT-T----------AATT--AA------T-GTTTTACAGTACGTCGGACTTTAAAGAACGGTCTGACCGAGGAGGAGAAACAGCACGTG	Size	Hit Count	Total Norm	Total
No Reads

droKik1

CATGGG-----------------------------AAAA-------ATGGAT-----------CTAAAC----------CTA-ATACCGATTTGTAAATATATATAAA-CTTTTGTAGCACGTTT-CTAACGGATTTTC-------------------------------------------AAAAA-TATCT-----GCCACTAATTTGACCTGCATGACCCAAACATCTAACAC-GGCATGTTGGCCACA----TACTAAATTA-------------------------TA------------------TTTGTCATA--------------------------------------------------------T-------------CCTT-TTA---TAAA-------TTTTAAAATAA--------------------TAT---TAT-A----------CATT--CA------T-ATTTTACAGTGCGTCGCACGCTGAAAAACGGTCTGACCGACGAGGAGAAACAGCACGTG	Size	Hit Count	Total Norm	Total
No Reads

droAna3

A-TGGC-----------------------------TTCAT------------------TTT---------------------TCCATCTTTTTGTAAATATAT----T-TCCGGATGGCATGTAAAATAATATATCTTC-------------------------------------------TAAAA-A--TG-----GCAACTAA-----ATGGCATGTTTCATACACTTAACCC-AGCATGGCAGACTCCGCCTAACAAAACAATTAAT-AA---------------------------------------------T--------------------------------------------------------ATTTT-------------ATTA---TATA-------CATATAATTAA--------------------TAT---AAT-T----------TATTTGTA------T-ATTTTACAGTGCGTCGCACGCTGAAGAACGGTCTGACCGACGAGGAGAAACAGCATGTG	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCTGACCGACGAGGAGAAAC........	22	1	1.00	1	1	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGGTCTGACCGACGAGGAGAAACAGCA....	28	1	1.00	1	1	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACGGTCTGACCGACGAGGA.............	21	1	1.00	1	1	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGGTCTGACCGACGAGGAGAA..........	22	1	1.00	1	1	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCTGACCGACGAGGAGA...........	19	1	1.00	1	1	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCTGACCGACGAGGAGAA..........	20	1	1.00	1	0	0	0	0	1	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAACGGTCTGACCGACGAGGA.............	23	1	1.00	1	0	0	0	0	1	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACGGTCTGACCGACGAGGAGAA..........	24	1	1.00	1	1	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCTGACCGACGAGGAG............	18	1	1.00	1	0	0	0	0	0	1
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGGTCTGACCGACGAGGAGAAAC........	25	1	1.00	1	0	0	0	0	0	1
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCACGCTGAAGAACGGTCTGACC.....................	24	1	1.00	1	1	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCACGCTGAAGAACGGTC..........................	19	1	1.00	1	0	0	0	0	1	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGGTCTGACCGACGAGGAGAAA.........	23	1	1.00	1	1	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGAAGAACGGTCTGACCG....................	20	1	1.00	1	1	0	0	0	0	0

droBip1

CTTTAT-----------------------------TTT--------------------------------------------TCCACCATTTTGTAAATATAT----TTTCCGTAAAGCATGAATTATAACATATTTTC-------------------------------------------TAAAA-AAAAG-----GCAACTAA-----ACGGCATGCCTCATACATTTAACAC-TGCATGGCAGACTCCGCCTAACCATCCAATTACC-AA---------------------------------------------T--------------------------------------------------------GTTT-------------TTAAA---A----------CTTAAAATTAA--------------------TAT---AAA-T----------AATTAAAA------T-ATTTTACAGTGCGTCGCACGCTGAAGAACGGTCTGACCGACGAGGAGAAACAGCATGTG	Size	Hit Count	Total Norm	Total
No Reads

dp5

CATGCG-----------------------------AATA----AAAATGGATCC--CA-------TA--AATGC------------------------TATAA----A-TTTCCTGGGCATGATT-GTAACAGA----C-------------------------------------------AGATA-TTCAG-----GCCTATAA-----AACGCATGTCTCGTACACCTAACATCTGCATGAAAGCCTC-----AACTTAAAATA------------------------TATGAGA--------AGAATTGTTTACTT--------------------------------------------------------T-------------AC----TGAATT------TTGT-ACTGAAATAA--------------------T-----AT-TCTAATAATTTA-TTG--TA------TAATTTTTCAGTGCGTCGCACGCTGAAGAACGGTCTGACCGATGAGGAGAAACAACATGTG	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCTGAAGAACGGTCTGACC.....................	20	1	2.00	2	0	0	0	0	0	0	0	0	2	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAACGGTCTGACCGATGAGGAG............	24	1	2.00	2	0	1	0	0	0	0	0	0	1	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGGTCTGACCGATGAGGAGA...........	22	1	1.00	1	0	0	0	0	0	0	0	0	1	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGCACGCTGAAGAACGGTCTGACC.....................	25	1	1.00	1	0	0	0	0	0	0	0	0	1	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACGGTCTGACCGATGAG...............	20	1	1.00	1	0	0	0	0	0	1	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACGGTCTGACCGATGAG...............	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCTGAAGAACGGTCTGACCGATGA................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGTCTGACCGATGAGGAG............	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACGGTCTGACCGATGAGGAGA...........	23	1	1.00	1	0	0	0	0	0	0	0	0	1	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGGTCTGACCGATGAGGAGAA..........	23	1	1.00	1	0	0	0	1	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACGGTCTGACCGATGAGGAGAAACA.......	27	1	1.00	1	0	0	0	0	0	1	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCTGAAGAACGGTCTGACCGATGAG...............	26	1	1.00	1	0	0	0	0	0	0	0	0	1	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGTCTGACCGATGAGGAGAAACAAC.....	26	1	1.00	1	0	0	0	1	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAGAACGGTCTGACCGATGAGGAG............	26	1	1.00	1	0	0	0	0	0	0	0	0	1	0

droPer2

CATGCG-----------------------------AATA----AGAATGGATCC--CA-------TA--AATGC------------------------TATAA----A-TTTCCTGGGCATGATT-GTAACAGA----C-------------------------------------------AGATA-TTCAG-----GCCTATAA-----AACGCATGTCTCGTACACCTAACATCTGCATGAAAGCCTC-----AACTTAATATA------------------------TATGAGA--------AAAAATGTTTACTT--------------------------------------------------------T-------------AT----TGAATT------TTGT-ACTGAAATAA--------------------T-----AT-TCTAATAATTTA-TTG--TA------TAATTTTTCAGTGCGTCGCACGCTTAAGAACGGTCTGACCGATGAGGAGAAACAACATGTG	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAGAACGGTCTGACCGATGAGGAG............	25	1	1.00	1	0	1	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACCGATGAGGAGAAACAAC.....	21	1	1.00	1	0	0	0	0	0	1
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAGAACGGTCTGACCGATGAGGAGA...........	26	1	1.00	1	0	0	0	0	0	1
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGGTCTGACCGATGAGGAGAAACA.......	26	1	1.00	1	0	1	0	0	0	0
...........................................................................................................A-TTTCCTGGGCATGATT-GTAACAGA----C-------------------------------------------AG...................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCTGACCGATGAGGAGA...........	19	1	1.00	1	0	0	0	0	0	1
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGTCTGACCGATGAGGA.............	18	1	1.00	1	0	1	0	0	0	0

droWil2

CATACA-----------------------------CAAA-------ACGT----------A-TA-----TATGTATATAC--------AATTTTTGT--TTTC----G-TTTCAATTGCATGTTC-TTAACCGATTTTT-------------------------------------------CAAAA-TCAAAACTGCGCCACTAA-----AACGCATGACACCGACACACA-CAC-ACACACACAGA------------------------------------------------GACAGAGACTAATAACGCTTGCTTTTTGCCCCCGCAATCCAATCTAATCATTGAACTTGTATAGTTAAACATT---------CCTATTTATAAAGAAT-ATGGACT----------GATCATAATCA--------------------T-----AT-TT-----------ATA--TA------TATTTTTTTAGTGCGACGCACGCTGAAGAATGGTCTGACCGATGAGGAGAAACAGCATGTG	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCTGAAGAATGGTCTGACC.....................	20	1	7.00	7	6	0	1	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGTCTGACCGATGAGGAGAAAC........	25	1	4.00	4	4	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCTGACCGATGAGGAGA...........	19	1	2.00	2	2	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACGCTGAAGAATGGTCTGACC.....................	23	1	2.00	2	2	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGTCTGACCGATGAGGAGAAACA.......	26	1	1.00	1	1	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAATGGTCTGACCGATGAGGAGA...........	26	1	1.00	1	1	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGGTCTGACCGATGAGGAGAAAC........	26	1	1.00	1	1	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGTCTGACCGATGAGGA.............	20	1	1.00	1	0	0	1	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGCACGCTGAAGAATGGTCTGACC.....................	26	1	1.00	1	1	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAGAATGGTCTGACCGATGAGGA.............	25	1	1.00	1	0	0	0	1	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCTGACCGATGAGGAGAAAC........	22	1	1.00	1	0	0	1	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGTCTGACCGATGAGGAGA...........	21	1	1.00	1	0	0	1	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCACGCTGAAGAATGGTCT.........................	20	1	1.00	1	0	0	1	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGCACGCTGAAGAATGGTCTGACCGA...................	27	1	1.00	1	0	0	1	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACGCTGAAGAATGGTCT.........................	19	1	1.00	1	0	1	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGTCTGACCGATGAGGAGAAACA.......	25	1	1.00	1	1	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGCACGCTGAAGAATGG............................	19	1	1.00	1	0	0	1	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCGATGAGGAGAAACAGCA....	21	1	1.00	1	0	0	1	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGTCTGACCGATGAGGAGAAACAGCA....	28	1	1.00	1	1	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGCACGCTGAAGAATGGTC..........................	21	1	1.00	1	1	0	0	0	0

droVir3

TGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTTTGCAGTGCGTCGAACGCTGAAGAACGGTCTCACCGATGAGGAGAAGCAGCATGTG	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACGGTCTCACCGATGAG...............	19	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCTCACCGATGAGGAGAAGC........	22	1	2.00	2	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAACGCTGAAGAACGGTCT.........................	20	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTCACCGATGAGGAGAAGC........	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAAGAACGGTCTCACC.....................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCGTCGAACGCTGAAGAACG.............................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACGGTCTCACCGATGAGGAGAAGC........	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGGTCTCACCGATGAGGAGAAGCA.......	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGGTCTCACCGATGAGGAGAAGC........	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACGGTCTCACCGATGAGGA.............	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGAACGCTGAAGAACGGT...........................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAACGGTCTCACCGATGAG...............	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGCTGAAGAACGGTCTCA.......................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGAAGAACGGTCTCACCG....................	20	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGGTCTCACCGATGAGGAGAAG.........	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTCACCGATGAGGAGAA..........	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGCTGAAGAACGGTCTCA.......................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTCACCGATGAGGAGAAGCAG......	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTCACCGATGAGGAGAAGCA.......	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGTCTCACCGATGAGGAGAAGCA.......	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAACGGTCTCACCGATGAG...............	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCACCGATGAGGAGAAGC........	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCGATGAGGAGAAGCAGC.....	20	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

CGAGGA-----------------------------GATGTTGGCAAATGGCT----------------------CTGGCC--------AAGTTTTGTTTATGC----G-C-----------CTGGCTGAA-----ATCCCAGTCGATT----------------------------------TTATT-TATAA-----GCATTTAC-----TAAGCATGCGCCTAACTCT---GAT-TGCATGAGAGAGAA-----ATCTGAAGATT---------------------------------------------------------------------------------TAATCATTTTACCTAAACAATTTCATTAATTT-------------TTGC--------------------------------------------------------------------TTT--TG------TGTTTTTGCAGTGCGCCGCACGCTGAAGAACGGCCTCAGCGAGGAGGAGAAACAGCACGTG	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGGCCTCAGCGAGGAGGAGAAAC........	25	1	1.00	1	1	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGCACGCTGAAGAACGGCCTC........................	22	1	1.00	1	1	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCTCAGCGAGGAGGAGA...........	19	1	1.00	1	1	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACGGCCTCAGCGAGGAG...............	19	1	1.00	1	1	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGCCGCACGCTGAAGAAC..............................	19	1	1.00	1	1	0	0	0	0	0

droGri2

CCGAGTTCCATTTGATTTCGTCTAATTCTGAACTGGATGTCTACAAATGGAGCT--CA-------C-----------------ACA--CAGTTTTGTT--TGC----G-C----CTCGCTCGATACCCAGTTGATCTTT---------TTAAATGCAAAGCATGCTCCTAACTCAAGTTTTCCAAAA-CA--C-----GTCACTAA--------------------------------------------------------ATACGCATG-ATAATCGCACATAAAATTATTTCAG--------------------------------------------------------------------------------TCT------------TT-AAA---CAAG-------TTTTTGAATAACTTGAAATCACAAAATTTGATGGTTGTTT-T----------GATT--TG------TGTGTTTGCAGTGCGTCGAACGCTGAAGAACGGTCTCACCGATGAGGAGAAACAGCACGTG	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

dsi_15979

3l:8575010-8575159 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads