ID:

dsi_1596

 Coordinate:

3r:21864481-21864755 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

ATTCCTGTGTGCCCTTCGGCACTCGAGAGCCTGGCATTTTTATATCGCACGTAAGTACAGACGGATAGATTAACTAACAATTACCTGCAGCAGCAGCTGGCAAAAAAGTTTTCGAATTAAAACACTCGAGTGGCCGCAACTTGCGAATGCAAATGAGCTGCTGCCGCTGCTGCTGCAAAACAATTGTTCAAAATCCAGTGGCTCGTAGGATGGCTTCATTATAAGCAGCCAACTAAGCCAGCTGCCTGCTCGAAAGTTTCAAGTCTTTTGGCCATTTATGAGTATAACAATTACCCCTGGGGTTTCTCCTCCTTAAATCGGACAGATTGTGCCCGGCGGGATTGCCTCCAAGTGCGGCAAGCTGCGCATGGGCGA
**************************************************.........((.(((.((((.....(((((((...((((((((((((.((((.........((((..........))))(((((..((..((((....)))).)).)))))))))))))))))))))....))))))).....(((((.(((((((((.(((((.........(((((.((.((.....)).)).)))))((((((........))))))))))))))))))............))))))))))).)))))..............************************************************** 		Read size # Mismatch Hit Count Total Norm Total M053
female body
 M025
embryo
 GSM343915
embryo
 M023
head
 M024
male body		 SRR902009
testis
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 SRR902008
ovaries
 SRR553486
Makindu_3 day-old ovaries
.........................................................................................................................................................................................................................................................................................................................................................CTCCAAGTGCGGCAAGCTGC.......... 20 0 1 2.00 2 0 0 0 1 1 0 0 0 0 0
......................................................................................................................................................................................................................................................................................................................................TTGTGCCCGGCGGGATTGCC............................. 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................................................................CATTGTGCCCGGCGGGATTG............................... 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.....................CTCGAGAGCCTGGCCTTTTTATATC......................................................................................................................................................................................................................................................................................................................................... 25 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................................................................................................TGCCTCCAAGTGCGGCAAGCTGCGC........ 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
..........GCCCTTCGGCACTCGAGAGCCTGGCAT.................................................................................................................................................................................................................................................................................................................................................. 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................................................................................ACATTGTGCCCGGCGGGATTGC.............................. 22 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................................................................................CGCACATTGTGCCCGGCGGGATT................................ 23 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0
...................CATACGAGAGGCTGGCATTTT............................................................................................................................................................................................................................................................................................................................................... 21 3 2 0.50 1 0 0 0 0 0 1 0 0 0 0
..................................................................................................................................................................................................CCAGGGGCTCGTAGG...................................................................................................................................................................... 15 1 7 0.14 1 0 0 0 0 0 0 1 0 0 0
.............................................................................................................................................................................................................TAGGATGGCTGCCGTATAA....................................................................................................................................................... 19 3 11 0.09 1 0 0 0 0 0 0 0 0 1 0
.................................................................................................................................................................................................................................................................TTCAAGTCTTTTGGG....................................................................................................... 15 1 18 0.06 1 0 0 0 0 0 0 0 1 0 0
................................................................................................................................................................................TAAACAATTGTTCAAAA...................................................................................................................................................................................... 17 1 19 0.05 1 0 0 0 0 0 0 1 0 0 0
.................................................................................................................................................AATGCAAATGATCTGAT..................................................................................................................................................................................................................... 17 2 20 0.05 1 0 0 0 0 0 0 0 0 0 1
.............................................................................................................................................TGCGAATGCATATGA........................................................................................................................................................................................................................... 15 1 20 0.05 1 0 0 0 0 0 0 0 1 0 0

Anti-sense strand reads

TAAGGACACACGGGAAGCCGTGAGCTCTCGGACCGTAAAAATATAGCGTGCATTCATGTCTGCCTATCTAATTGATTGTTAATGGACGTCGTCGTCGACCGTTTTTTCAAAAGCTTAATTTTGTGAGCTCACCGGCGTTGAACGCTTACGTTTACTCGACGACGGCGACGACGACGTTTTGTTAACAAGTTTTAGGTCACCGAGCATCCTACCGAAGTAATATTCGTCGGTTGATTCGGTCGACGGACGAGCTTTCAAAGTTCAGAAAACCGGTAAATACTCATATTGTTAATGGGGACCCCAAAGAGGAGGAATTTAGCCTGTCTAACACGGGCCGCCCTAACGGAGGTTCACGCCGTTCGACGCGTACCCGCT
**************************************************.........((.(((.((((.....(((((((...((((((((((((.((((.........((((..........))))(((((..((..((((....)))).)).)))))))))))))))))))))....))))))).....(((((.(((((((((.(((((.........(((((.((.((.....)).)).)))))((((((........))))))))))))))))))............))))))))))).)))))..............************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 GSM343915
embryo
................................................................................................................................................................................................................................................................................................................AGAGGAAGAATTTGGCCTGT................................................... 20 2 1 1.00 1 0 0 1 0 0
........................CTCTCGGGCCATAACAATA............................................................................................................................................................................................................................................................................................................................................ 19 3 9 0.67 6 6 0 0 0 0
..............................................................................................................AAGCTTAATTTTGTG.......................................................................................................................................................................................................................................................... 15 0 2 0.50 1 0 1 0 0 0
..............................................................................................................................................................................................................................................................TCAAAGTTCAGAAAAGAGTTAAA.................................................................................................. 23 3 3 0.33 1 0 1 0 0 0
...GGGCACACGGGAAGCAATGA................................................................................................................................................................................................................................................................................................................................................................ 20 3 4 0.25 1 1 0 0 0 0
............GGTAGCCGTGATCTCTCG......................................................................................................................................................................................................................................................................................................................................................... 18 2 4 0.25 1 0 1 0 0 0
........................CTCTCGGGCCATAACAAT............................................................................................................................................................................................................................................................................................................................................. 18 3 20 0.15 3 2 0 0 1 0
...............................................................................................................................................................................................................................................TCGACGGCCGAGCTTT........................................................................................................................ 16 1 8 0.13 1 1 0 0 0 0
..................................................................................................................................................................................................................................GCGGTTGATTCGGTGGAC................................................................................................................................... 18 2 8 0.13 1 0 0 0 0 1
..............................................................................................................AAGCTTAATTTTGTGC......................................................................................................................................................................................................................................................... 16 1 10 0.10 1 0 0 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3r:21864431-21864805 + dsi_1596 ATTCCTGTGTGCCCTTCGGCACTCGAGAGCCTGGCATTTTTATATCGCACGTAAGTACAGACGG----------------------------------------ATAGATTA----ACTA-----------------------------------------------ACAATTACCT---GCAGCA------------GCAGCT--------------------------------------------------------------------GGCAAAAAAGTTTTCGAATTAAAACACT-CGAGTGGCCG---CAACTTGCGAATGCAAATGAGCTGC---TGCC------------GCTGCTGCTGCAA---AACAAT-TGTTCAAAATCCAGTGGCTCGTAGGATG------------GCTTCATTATAA--GCAGCCA-ACTAAGCCAG----------------------------------------CTGCCTG--------CTCGAAAGTTTCAAGTCTTTT-GGCCA---TT-------------------------------TAT--GAGTATAACAATTACCCCTGGGG-TTTC--------------TCCTCCTTAAATCGGACAGATTGTGCCCGGCGGGATTGCCTCCAAGTGCGGCAAGCTGCGCATGGGCGA
droSec2 scaffold_13:1179605-1179979 + ATTCCTGTGTGCCCTTCGGCACTCGAGAGCCTGGCATTTTCATATCGCACGTAAGTACAGACGG----------------------------------------ATAGATTA----ACTA-----------------------------------------------ACAATTACCT---GCAGCA------------GCAGCT--------------------------------------------------------------------GGCAAAAAAGTTTTCGAATTAAAACACT-CGAGTGGCCG---CAACTTGCGAATGCAAATGAGCTGC---TGCC------------GCTGCTGCTGCAG---AACAAT-TGTTTAAAATCCAGTGGCTCGTAGGATG------------GCTTCATTATAA--GCAGCCA-ACTAAGCCAG----------------------------------------CTGCTTG--------CTCGAAAGTTTCAAGTCTTTT-GGCCA---TT-------------------------------TAT--GAGTATAACAATTACCCCTGGGG-TTTC--------------TCCTCCTTAAATCGGACAGATTGTGCCCGGCGGGATTGCCTCCAAGTGCGGCAAGCTGCGCATGGGAGA
dm3 chr3R:22404504-22404873 + ATTCCTGTGTGCCCTTCGGCACTCGAGAGCCTGGCATATTCATATCGCACGTAAGTACAGACGG----------------------------------------ATAGATTAACTAACTA-----------------------------------------------ACAATTACCT---GCAGCA------------GCAGCT--------------------------------------------------------------------GGCAAAAAAGTTTTCGAATTAAAACACT-CGAGTGGCCG---CAACTTGCGAATGCAAATGAGCTGC---TGC---------------------TGCAG---AACAAT-TGTTCAGAATCCAGTGGCTCGTAGGATG------------GCTTTATTATAA--GCAGCCA-ACTAAGCCAG----------------------------------------CTGCCTG--------CTCGAAAGTTTCAAGTCTTTT-GGCCA---TT-------------------------------TAT--GAGTATAACAATTACCCCTGGGG-TTTC--------------TCCTCCTTAAATCCGTCAGATTGTGCCCGGCGGGATTGCCTCCAAGTGCGGCAAGCTGCGCATGGGCGA
droEre2 scaffold_4820:5651062-5651448 - ATTCCTGTGTGCCCTTCGGCACTCGAGAGCCCGGCATTTTCATATCGCACGTAAGTACGGACGG----------------------------------------ATATATTA----ACTA-----------------------------------------------ACAATTACCT---GCAGCA------------GCAGCT--------------------------------------------------------------------GGCAAAAAAGTTTTCGAATTAAAACACT-CGAGTGGCCG---CAACTTGTGAATGCAAATGAGCTGC---TGCTGCTCCTGCTGCTGCTTCTGCTGCAG---AACAAT-TGTTCAGAATCCAGTGGCTCGGAGGATG------------GCTTCATTATAA--GCAGCCA-ACTAAGCCAG----------------------------------------CTGCCAG--------CTCGAAAGTTTCAAGTCTTTT-GGCCA---TT-------------------------------TAT--GAGTATAACAATTACCCATGGGG-TTTC--------------CCCTCCTTAAATCGGACAGATTGTGCCCGGCGGGATTGCCTCCAAGTGCGGCAAGCTGCGCATGGGCGA
droYak3 3R:24095853-24096261 - dya_1134 ATTCCTGTGTGCCCTTCGGCACTCGAGAGCCCGGCATTTTCATATCGCACGTAAGTACAGACGG--------------AT----------------------GGCTGTATTA----ACTA-----------------------------------------------ACAATTACCT---GCAGCAGCAGCAGCAGCAGCAGCT--------------------------------------------------------------------GGCAAAAAAGTTTTCGAATTAAAACACT-CGAGTGGCCG---CAACTTGCGAATGCAAATGAGCTGC---TGCTGCTTCT---------GCTGCTGCAG---AACAAT-TGTTCAGAATCCAGTGGCTCAGTGGC----TCAGTGGATGGCTTCATTATAA--GCAGCCA-ACTAAGCCAG----------------------------------------CTGCCAG--------CTCGAAAGTTTCAAGTCTTTT-GGCCA---TT-------------------------------TAT--GAGTATAACAATTACCCCTGGGG-TTTCCC-CCACC------CCCTTCTTAAATCGGACAGATTGTGCCCGGCGGGATTGCCTCCAAGTGCGGCAAGCTGCGCATGGGCGA
droEug1 scf7180000409682:189663-190031 - ATTCCTGTGTGCCCTTTGGCACTCGAGAGCCCGGCATTTTCATATCGCACGTAAGTATAA-GAG--------------A-----------------------GGGTGTATTA----ACTA-----------------------------------------------ACAATTACCT---GCTGCA------------GCAGCT--------------------------------------------------------------------GG--AAAAAGTTTTCGAATTAAAACACT-CGAGTGGCCG---CAACTTGCGAATGCAAATGAGCTGC---TGC------------------TGCTCGAGCGC---AAT-TGTTCAGAGTGCAGTGGCTCGGACGTTG------------GCTTCATTATAA--GCTGCCA-ACTAAGCCAG----------------------------------------CTGCCAG--------TTCGAAAGTTTCAAGTTTTTTCGGCCA---TT-------------------------------TAT--GAGTATAACAATTGCCCTTGGGG-TCTC---------------CCTTCTTGAATCCGACAGATTGTGCCCGGCGGGATTGCCTCCAAGTGCGGCAAGCTGCGCATGGGCGA
droBia1 scf7180000302113:2641126-2641527 + ATTCCTGTGTGCCCTTTGGCACTCGAGAGCCCGGCATTTTCATATCGCACGTAAGTCGAG-GGC--------------AT----------------------GGGTATATTA----ACTA-----------------------------------------------ACAATTACCT---TCCGCA------------GCAGTT--------------------------------------------------------------------GGGTGAAAAGTTTTCGAATTAAAACACT-CGAGTGGCCG---CAACTTGCGAATGCAAATGAGCTCAGGCTGCTGCTTCTGCTGCTCCTGCTGCTG---CAC---AAT-TGTTCGGAATCCAGTGGCTCGGACGATG------------GCTTCATAATAAGAGCAGCCA-ACTAAGCCAG--------------------------CTG-----------CTGGCAG--------CTCAAAAGTTTCAAGTTTTTTCGACCA---TTCAT-------------------------------------ATAACAATTGCCCTTGGGG-TTTCCC-CG-CTCTTTTATCCT-C-TGAATCCAACAGATTGTGCCCGGCGGGATTGCCTCCAAGTGCGGCAAGCTGCGCATGGGAGA
droTak1 scf7180000415286:411721-412092 + ATTCCTGTGTGCCCTTTGGCACTCGAGAGCCTGGAATTTTCATATCGCACGTAAGTAGAGGGGG-TAGAT--------A-----------------------GGGTATATTA----ACTA-----------------------------------------------ACAATTACCTTCTGCAGCA------------GCAGTT--------------------------------------------------------------------GGGTAAAAACTTTTCGAATTAAAACTCT-CGAGTGGCCGCTGCAAGTTGCGAATGCAAATGAGCTCGAGCTGCTGC--------------CTGCTG---CAC---AAT-TGTTCAAAATCCAGTGGCTCGGAGGATG------------G-----------------CCA-ACTTAGCCAG----------------------------------------CTGGCAG--CAGCAGCTCAAAAGTTTCAAGTTTTTTCGACCA---TTCAT-------------------------------------ATAACAATTGC-CTTGGGG-TTTCCC-A----------TTCTCC-----TCCAACAGATTGTGCCCGGCGGGATTGCCTCCAAGTGCGGCAAGCTGCGCATGGGCGA
droEle1 scf7180000491280:424043-424421 + ATTCCTGTGTGCCCTTCGGCACTCGAGAGCCCGGCATTTTCATATCGCATGTGAGTAT--------------------------------------------GGGTATATTA----ACTA-----------------------------------------------ACAGTCACCT---GCAGCA---------------GCT--------------------------------------------------------------------GG--TGAAACTTTTCGAATTAAAACACT-TGAGTGGCCGC-ACAACTTGCGAATGCAAATGAACTGC---TG---------------------------CAC---AAT-TGTTCAGAATGCAGTGGCTCGGTCGCTG------------GCTTCATTATAA--GCGGCCAAACTATGCCAG----------------------------------------CTGGCAGGCCAACCGCTTGAAACTTTCAAGTTTTTC-GACCA---TTCATA----------TTTTCTGCCA--GCAGCTAT--AAGTATAACAATTACCCTTGGGGGTTTC--------------C---CCTCAAATCCGACAGATTGTGCCCGGCGGGATTGCCTCCAAGTGCGGCAAGCTGCGCATGGGAGA
droRho1 scf7180000778271:67900-68282 + ATTCCTGTGTGCCTTTCGGCACTCGAGAGCCAGGCATTTTCATATCGCATGTAAGTAT--------------------------------------------GGGTATATTA----ACTA-----------------------------------------------ACAATTACCT---GCGGCA---------------GCTGCCCCAAAA----------------------------------------------------------AGGGGGAAAACTTTTCGAATTAAAACACT-CGAGTGGCCG---CAACTTGCGAATGCAAATGAGCTGC---TG---------------------------CAC---AAT-TGTTCAGATTGCAGTGGCTCGGACGATG------------GCTTCATTATAA--GCAGCCAAACTAAGCCAG----------------------------------------CTGCCAG--------CTTGAAACTTTCAAGTTTTTC-GACCA---TACATA----------TTTCCTGCCATTCCTGCCAT--AAGTATAACAATTGCCCTTGGGGGTTTC-----------------TCCTTAAATCCGACAGATTGTGCCCGGCGGGATTGCCTCCAAGTGCGGCAAGCTGCGCATGGGCGA
droFic1 scf7180000454055:2295850-2296241 + ATTCCTGTGTGCCCTTCGGCACTCGAGAGCCGGGCATTTTCATATCGCATGTAAGTAC--------------------------------------------GGCTATATTA----ACTA-----------------------------------------------ACAATCACCT---GCAGCA---------------GCTGCCACAAAAAATAAAAAATA-AA--AAAAGAG-----------------G-------------AAGGGAGGTGAAAACTTTTCGAATTAAAACACT-CGAGTGGCCG---CAACTTGCGAATGCAAATGAGCTGA-GCTGC---------------------TG---CAC---AAT-TGTTCGGAACGCAGTC------------------------GCTTCATTATGA--GCAGGCA-ACTAAGCCAG----------------------------------------CTG------------CTGGAAACTTTCAAGTTTTTC-GGCCA---TTCATA----------TTCCCTGCGA-----GCTATAAGTGTATAACAATTGCCCCCGGGC-ATTA-----------------TCCTTAAATCCGACAGATTGTGCCCGGCGGGATTGCCTCGAAGTGCGGCAAACTGCGCATGGGAGA
droKik1 scf7180000302253:299258-299563 - ATTCCTGCGTGCCCTTTGGCAGTCGAGAGCCTGGCATTTTCATATCGCATGTAAGTAGGG------------------------------------------------------------------------------------------------------------------------------------------GTAGCT--------------------------------------------------------------------G--TAAAAACTTTTTGAATTAAAACACT-CGAGTGGCCG-------------ATGCAAATGAGCTGC---TG---------------------------CAC---AAT-TGTGCAGAATCTAGTGGCTCGGACGGTG------------GCT------------------------GCCGG----------------------------------------CTGCCAA--------CTTGAAAGTTTCAAGTTTTTT-GGCCAGCCTTCAT---------------------------CTAC--AAGTATAACAATTACCCTTGGGG-GTTGCTTC----------TACCCTTTTATTCTGGCAGATTGTGCCCGGCGGGATTGCCTCGAAGTGCGGCAAGCTGCGCATGGGAGA
droAna3 scaffold_13340:16937778-16938151 - ATTCCTGTGTGCCCTTCGGCACCCGAGAGCCCGGAATATTCATCTCGCATGTAAGTAGAT--G-----------------------------------------AAGGATGA----ACTA-----------------------------------------------ACAATTACCC---TCAGCT---------------GCTGGCA------------------------------------------------------------------GCAAAAACTTTTCGAATTAAAACACT-CGAGCGACGG---AAACTTGCGAATGCAAATGAGTTGC---AGC------------------TCCTG---CAG---AAT-TGTTCAAAATGCAGGGGCCCAGGC--------CGGCGATGGCTCCATTATGA--GCGGTTA-ACTAAGCCAG----------------------------------------CTGCTGG--------GTCGAAACTTTTAAGTTTTCC-GGGTA---TTCATA----------ATCTCCCCA---------AT--GAGCTAATCCATGACCCTTGGGG-C------------------ACTCCTTTAATCCCCCAGATTGTTCCTGGCGGAATTGCTTCGAAGTGCGGCAAGCTGCGCATGGGCGA
droBip1 scf7180000396424:451907-452258 - ATTCCTGTGTGCCCTTCGGCACTCGAGAGCCCGGAATATTCATCTCGCATGTAAGTAGA--CGG----------------------------------------A-GGATGA----ACTA-----------------------------------------------ACAATTACCC---TCAGCT---------------GCTGGCA-------------------------------------------------------------GCTCG--AAAAACTTTTCGAATTAAAACACT-CGAGTGGCGG---AAACTTGCGAATGCAAATGAGCTGCAGCTCC---------------TGC-------------------------------------CGGAC--TG------------GCTCTATTATGA--GCGGTTA-ACTAAGCCAG--------------------------CTGC-------CGGCT---------AC--TGTGAAACTTTCAAGTTCTAC-GGGTA---TTCATA----------ATCTCCCCA---------AT--GAGCTAATCCATGACCCTTGGGC-ACTTC-------------T---TC-TGCATCCCACAGATTGTTCCTGGCGGTATCGCCTCCAAGTGCGGCAAGCTGCGCATGGGCGA
dp5 2:10414387-10414443 + ATTCCTGTGTGCCGTTCGGCAATCGTGAGCCTGGCATCTTCATTTCACACGTAAGTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droPer2 scaffold_0:10067347-10067403 - ATTCCTGTGTGCCGTTCGGCAATCGTGAGCCCGGCATCTTCATTTCACACGTAAGTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droWil2 scf2_1100000004943:6798367-6798834 - ATTCCTGTGTGCCCTTTGGCACTCGTGAGCCTGGAATTTTCATTTCACATGTAAGTAGAA-TAC--------------AA----------------------AGTACAATTA----ACTAAATGCGGTTGCAAGAGTCAATGATAAACTAGACCAAACACAAATAGAAAAAAAA----------------------------AT-------------------GGGT--AGAAAAC-----------------T-------------AAGCAAAAAGAAAACTTTTCAAATTAAAACACT-TGAG---------CAACTTGCAAATGTAAATGAGCTGC---------------------------------ACAAAATT-TATACAAAATGCACTCGCTCGGACAACGACAATGACGATGGCTTCATTATAA--GCAATTA-ACTCAACCACAGCGTGTGGTGCGGGTGGTAGTTGAGTTGCGATGGGTGGGCT-------------TTTGAAACTTTCAAGTTTATA-AGCTT---TTCATTTAGTAATTCATTTTCCCCA-TT-----TC---TCGTTTTTTCTTGTTCTTTGTGT-T-------------------CTTC------TCCACAGATTGTGCCCGGCGGAATTGCTTCGAAATGCGGTAAATTGCGCATGGGAGA
droVir3 scaffold_12822:3541283-3541479 - ACTCCTGTGTGCCATTCGGCACACGCGAACCGGGCATTTTCATTTCACATGTAAGTAAAG-CGAACAGAAAATTGCTGAGATTGTGGTGCGGTACGGTGATGGGGGGGATGG----GCGA-----------------------------------------------GAG-------------------------------------------------------------ATGGCTTT----------T----------------AAAACTAGGGACAAACTTTTCAAACTAATGCAGTTCTCGCTGCCA---CAGCTTGCGGTTGCAAATGAGCTGC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3 scaffold_6540:16845094-16845333 - ACTCCTGTGTGCCATTTGGTACACGCGAACCGGGCATTTTTATTTCACATGTAAGTCAAA-CGA--------------AA----------------------AGCGGA----------------------------------------------AAGCGAAACCCGAAAAGCGAATT---GCAGCG------------C-------------------------GGTGGGGACGGC----------GTTTCTAT-------------AAACTGGGGACAAACTTTTCAAATTAGAGCAAT-TGACGTGCCA---CAACTTGCGGTTGCAAATGAACTGC---------------------------------AC---AATTAGTTCACAGCGC----------ATGCCG------------GCATCTTTACAA--GCAATTA-AATGAACC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2 scaffold_14906:1156660-1156856 - ACTCCTGTGTGCCATTCGGTACTCGCGAACCGGGCATTTTCATTTCACATGTAAGTTGAA-CCACCAACGAATTTCGAAA----------------------AGGGGC----------------------------------------------AAGG----GTGG--AG-------------------------------------------------------------ATGGATGTGGGTGTGGTGTGTACCACTGCGAGGCGAAAACTAGTAACAAA--CTGCAAATTAAAGCAAT-TGAGCTGCCG---CAACTTGTGGTTGCAAATGAGCTGC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
ATTCCTGTGTGCCCTTCGGCACTCGAGAGCCTGGCATTTTTATATCGCACGTAAGTACAGACGG----------------------------------------ATAGATTA----ACTA-----------------------------------------------ACAATTACCT---GCAGCA------------GCAGCT--------------------------------------------------------------------GGCAAAAAAGTTTTCGAATTAAAACACT-CGAGTGGCCG---CAACTTGCGAATGCAAATGAGCTGC---TGCC------------GCTGCTGCTGCAA---AACAAT-TGTTCAAAATCCAGTGGCTCGTAGGATG------------GCTTCATTATAA--GCAGCCA-ACTAAGCCAG----------------------------------------CTGCCTG--------CTCGAAAGTTTCAAGTCTTTT-GGCCA---TT-------------------------------TAT--GAGTATAACAATTACCCCTGGGG-TTTC--------------TCCTCCTTAAATCGGACAGATTGTGCCCGGCGGGATTGCCTCCAAGTGCGGCAAGCTGCGCATGGGCGASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCCAAGTGCGGCAAGCTGC..........2012.00211000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTGCCCGGCGGGATTGCC.............................2011.00100100000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCTCCAAGTGCGGCAAGCTGCGC........2511.00100000000000100000
..........GCCCTTCGGCACTCGAGAGCCTGGCAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100010000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCAAGTCTTTT-GGG..........................................................................................................................................................15180.06100000000010000000
droSec2
ATTCCTGTGTGCCCTTCGGCACTCGAGAGCCTGGCATTTTCATATCGCACGTAAGTACAGACGG----------------------------------------ATAGATTA----ACTA-----------------------------------------------ACAATTACCT---GCAGCA------------GCAGCT--------------------------------------------------------------------GGCAAAAAAGTTTTCGAATTAAAACACT-CGAGTGGCCG---CAACTTGCGAATGCAAATGAGCTGC---TGCC------------GCTGCTGCTGCAG---AACAAT-TGTTTAAAATCCAGTGGCTCGTAGGATG------------GCTTCATTATAA--GCAGCCA-ACTAAGCCAG----------------------------------------CTGCTTG--------CTCGAAAGTTTCAAGTCTTTT-GGCCA---TT-------------------------------TAT--GAGTATAACAATTACCCCTGGGG-TTTC--------------TCCTCCTTAAATCGGACAGATTGTGCCCGGCGGGATTGCCTCCAAGTGCGGCAAGCTGCGCATGGGAGASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCCCGGCGGGATTGCCTCCAAGTGC....................2712.0020020
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCTCCAAGTGCGGCAAGCTGCGCATGG....2911.0010010
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTGCCCGGCGGGATTGC..............................2011.0010010
.....TGTGTGCCCTTCGGCACTCGAGAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCCAAGTGCGGCAAGCTGCGCATGG....2611.0010010
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCCAAGTGCGGCAAGCTGCGC........2211.0010010
dm3
ATTCCTGTGTGCCCTTCGGCACTCGAGAGCCTGGCATATTCATATCGCACGTAAGTACAGACGG----------------------------------------ATAGATTAACTAACTA-----------------------------------------------ACAATTACCT---GCAGCA------------GCAGCT--------------------------------------------------------------------GGCAAAAAAGTTTTCGAATTAAAACACT-CGAGTGGCCG---CAACTTGCGAATGCAAATGAGCTGC---TGC---------------------TGCAG---AACAAT-TGTTCAGAATCCAGTGGCTCGTAGGATG------------GCTTTATTATAA--GCAGCCA-ACTAAGCCAG----------------------------------------CTGCCTG--------CTCGAAAGTTTCAAGTCTTTT-GGCCA---TT-------------------------------TAT--GAGTATAACAATTACCCCTGGGG-TTTC--------------TCCTCCTTAAATCCGTCAGATTGTGCCCGGCGGGATTGCCTCCAAGTGCGGCAAGCTGCGCATGGGCGASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCCAAGTGCGGCAAGCTGCGCATGG....2616.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTCCAAGTGCGGCAAGCTGCGCATG.....2715.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCTCCAAGTGCGGCAAGCTGCGC........2515.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000100000000000000000100100000000
....................ACTCGAGAGCCTGGCATATTCATATCGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2814.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000002000000000000
.......TGTGCCCTTCGGCACTCGAGAGCCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2514.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000
....................ACTCGAGAGCCTGGCATATTCATATC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2614.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTGCCCGGCGGGATTGCCT............................2213.0030000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
..TCCTGTGTGCCCTTCGGCACTCGAGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2613.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTGCCCGGCGGGATTG...............................1912.0020000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............CTTCGGCACTCGAGAGCCTGGCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000
.......................CGAGAGCCTGGCATATTCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C--------------TCCTCCTTAAATCCGTCAG..................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCCAAGTGCGGCAAGCTGCGCATG.....2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.......................CGAGAGCCTGGCATATTCATATCGCAC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000
...............TCGGCACTCGAGAGCCTGGCATATTCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTGCCCGGCGGGATTGCCT............................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000
.....................CTCGAGAGCCTGGCATATTCATATCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCCTCCAAGTGCGGC.................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGCCCGGCGGGATTGCCTC...........................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCGGCGGGATTGCCTCCAAGTGCGGT.................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
.......................CGAGAGCCTGGCATATTCATATCGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
........................................................ACAGACGG----------------------------------------ATAGATTAACTAACT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCCGGCGGGATTGCCTCCAAGTGC....................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
......................TCGAGAGCCTGGCATATTCATATCGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000
.......TGTGCCCTTCGGCACTCGAGAGCCTGGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
ATTCCTGTGTGCCCTTCGGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................GAGAGCCTGGCATATTCATATC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAAGTGCGGCAAGCTGCGC........2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
........................GAGAGCCTGGCATATTCAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....TGTGTGCCCTTCGGCACTCGAGAGCCTGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTCCAAGTGCGGCAAGCTGCGC........2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
...............TCGGCACTCGAGAGCCTGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTCCAAGTGCGGCAAG..............1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......GTGTGCCCTTCGGCACTCGAGAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........CCCTTCGGCACTCGAGAGCCTGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCCAAGTGCGGCAAGCTG...........1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
.................GGCACTCGAGAGCCTGGCATATTC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTGCCCGGCGGGATTGCCTCC..........................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................TGCGAATGCAAATGAGCTGC---TGC---------------------TGCAG---A........................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCCAAGTGCGGCAAGCTGCGC........2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTGCGGCAAGCTGCGCATGGGC..2411.0010000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTGCCCGGCGGGATT................................1711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........TGCCCTTCGGCACTCGAGAGCCTGGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................TATCGCACGTAAGTACAGACGG----------------------------------------ATAGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................AGTGGCTCGTAGGATG------------GCTT......................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................ACT-CGAGTGGCCG---CAACTTGCGAATG........................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAAGTGCGGCAAGCTGCG.........1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTGCCCGGCGGGATTGC..............................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAAGTGCGGCAAGCTGCG.........2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTCCAAGTGCGGCAAGCTGCGCATGGGC..3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGTGCGGCAAGCTGCGCATGGGC..2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
................CGGCACTCGAGAGCCTGGCATATT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCCTCCAAGTGCGGCAAGC.............2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCAAGTCTTTT-GGCCA---TT-------------------------------TAT--GA.............................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCGGCAAGCTGCGCATGGG...2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
......................TCGAGAGCCTGGCATATTCATATCGCAC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................GCTGC---TGC---------------------TGCAG---AACAAT-TGTTCAGA..........................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C--------------TCCTCCTTAAATCCGTCAT..................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTGCCCGGCGGGATTGCCTT...........................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
droEre2
ATTCCTGTGTGCCCTTCGGCACTCGAGAGCCCGGCATTTTCATATCGCACGTAAGTACGGACGG----------------------------------------ATATATTA----ACTA-----------------------------------------------ACAATTACCT---GCAGCA------------GCAGCT--------------------------------------------------------------------GGCAAAAAAGTTTTCGAATTAAAACACT-CGAGTGGCCG---CAACTTGTGAATGCAAATGAGCTGC---TGCTGCTCCTGCTGCTGCTTCTGCTGCAG---AACAAT-TGTTCAGAATCCAGTGGCTCGGAGGATG------------GCTTCATTATAA--GCAGCCA-ACTAAGCCAG----------------------------------------CTGCCAG--------CTCGAAAGTTTCAAGTCTTTT-GGCCA---TT-------------------------------TAT--GAGTATAACAATTACCCATGGGG-TTTC--------------CCCTCCTTAAATCGGACAGATTGTGCCCGGCGGGATTGCCTCCAAGTGCGGCAAGCTGCGCATGGGCGASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTCCAAGTGCGGCAAGCTGCG.........2311.0011000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCCAAGTGCGGCAAGCTGCGCATGGGC..2811.0010100000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCGGGATTGCCTCCAAGTGC....................2111.0010100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCTCCAAGTGCGGCAAGCTGCGC........2511.0010000100
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTCCAAGTGCGGCAAGCTGCGC........2411.0010000010
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAAGTGCGGCAAGCTGCGC........2111.0010000010
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGCTGCGCATGGGCG.1811.0010000010
....................ACTCGAGAGCCCGGCATTTTC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010001000
droYak3
ATTCCTGTGTGCCCTTCGGCACTCGAGAGCCCGGCATTTTCATATCGCACGTAAGTACAGACGG--------------AT----------------------GGCTGTATTA----ACTA-----------------------------------------------ACAATTACCT---GCAGCAGCAGCAGCAGCAGCAGCT--------------------------------------------------------------------GGCAAAAAAGTTTTCGAATTAAAACACT-CGAGTGGCCG---CAACTTGCGAATGCAAATGAGCTGC---TGCTGCTTCT---------GCTGCTGCAG---AACAAT-TGTTCAGAATCCAGTGGCTCAGTGGC----TCAGTGGATGGCTTCATTATAA--GCAGCCA-ACTAAGCCAG----------------------------------------CTGCCAG--------CTCGAAAGTTTCAAGTCTTTT-GGCCA---TT-------------------------------TAT--GAGTATAACAATTACCCCTGGGG-TTTCCC-CCACC------CCCTTCTTAAATCGGACAGATTGTGCCCGGCGGGATTGCCTCCAAGTGCGGCAAGCTGCGCATGGGCGASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................CCA-ACTAAGCCAG----------------------------------------CTGCCAG--------CTCGAAAGT..........................................................................................................................................................................29110.0010000000000010
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTCCAAGTGCGGCAAGCTGCG.........2312.00201100000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCCAAGTGCGGCAAGCTGCG.........2112.00200000110000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCGGCAAGCTGCGCATGGGC..2111.00100100000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCGGCAAGCTGCGCATGGGCG.2211.00100000100000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCGGGATTGCCTCCAAGTGCG...................2211.00101000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCC-CCACC------CCCTTCTTAAATCGGAC....................................................2611.00110000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCGGGATTGCCTCCAAGTGCGGC.................2411.00101000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCTCCAAGTGCGGCAAGCTGCGC........2511.00101000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTCCAAGTGCGGCAAGCTGCG.........2211.00100000010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGGCAAGCTGCGCATGGGCG.2111.00100000010000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCCAAGTGCGGCAAGCTGCGC........2211.00100000010000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTCCAAGTGCGGCAAGCTGCGC........2311.00100100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAAGCTGCGCATGGGC..1811.00101000000000
..........GCCCTTCGGCACTCGAGAGCCC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100100000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTCCAAGTGCGGCAAGCTGCGC........2411.00100010000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTCCAAGTGCGGCAAGCTGCGCATGGG...2911.00100000010000
....................................................................................................................................................................................GCAGCAGCAGCAGCAGCAGCAGCT--------------------------------------------------------------------...............................................................................................................................................................................................................................................................................................................................................................................................................................24180.06100100000000
droEug1
ATTCCTGTGTGCCCTTTGGCACTCGAGAGCCCGGCATTTTCATATCGCACGTAAGTATAA-GAG--------------A-----------------------GGGTGTATTA----ACTA-----------------------------------------------ACAATTACCT---GCTGCA------------GCAGCT--------------------------------------------------------------------GG--AAAAAGTTTTCGAATTAAAACACT-CGAGTGGCCG---CAACTTGCGAATGCAAATGAGCTGC---TGC------------------TGCTCGAGCGC---AAT-TGTTCAGAGTGCAGTGGCTCGGACGTTG------------GCTTCATTATAA--GCTGCCA-ACTAAGCCAG----------------------------------------CTGCCAG--------TTCGAAAGTTTCAAGTTTTTTCGGCCA---TT-------------------------------TAT--GAGTATAACAATTGCCCTTGGGG-TCTC---------------CCTTCTTGAATCCGACAGATTGTGCCCGGCGGGATTGCCTCCAAGTGCGGCAAGCTGCGCATGGGCGASizeHit CountTotal NormTotal
No Reads
droBia1
ATTCCTGTGTGCCCTTTGGCACTCGAGAGCCCGGCATTTTCATATCGCACGTAAGTCGAG-GGC--------------AT----------------------GGGTATATTA----ACTA-----------------------------------------------ACAATTACCT---TCCGCA------------GCAGTT--------------------------------------------------------------------GGGTGAAAAGTTTTCGAATTAAAACACT-CGAGTGGCCG---CAACTTGCGAATGCAAATGAGCTCAGGCTGCTGCTTCTGCTGCTCCTGCTGCTG---CAC---AAT-TGTTCGGAATCCAGTGGCTCGGACGATG------------GCTTCATAATAAGAGCAGCCA-ACTAAGCCAG--------------------------CTG-----------CTGGCAG--------CTCAAAAGTTTCAAGTTTTTTCGACCA---TTCAT-------------------------------------ATAACAATTGCCCTTGGGG-TTTCCC-CG-CTCTTTTATCCT-C-TGAATCCAACAGATTGTGCCCGGCGGGATTGCCTCCAAGTGCGGCAAGCTGCGCATGGGAGASizeHit CountTotal NormTotal
No Reads
droTak1
ATTCCTGTGTGCCCTTTGGCACTCGAGAGCCTGGAATTTTCATATCGCACGTAAGTAGAGGGGG-TAGAT--------A-----------------------GGGTATATTA----ACTA-----------------------------------------------ACAATTACCTTCTGCAGCA------------GCAGTT--------------------------------------------------------------------GGGTAAAAACTTTTCGAATTAAAACTCT-CGAGTGGCCGCTGCAAGTTGCGAATGCAAATGAGCTCGAGCTGCTGC--------------CTGCTG---CAC---AAT-TGTTCAAAATCCAGTGGCTCGGAGGATG------------G-----------------CCA-ACTTAGCCAG----------------------------------------CTGGCAG--CAGCAGCTCAAAAGTTTCAAGTTTTTTCGACCA---TTCAT-------------------------------------ATAACAATTGC-CTTGGGG-TTTCCC-A----------TTCTCC-----TCCAACAGATTGTGCCCGGCGGGATTGCCTCCAAGTGCGGCAAGCTGCGCATGGGCGASizeHit CountTotal NormTotal
No Reads
droEle1
ATTCCTGTGTGCCCTTCGGCACTCGAGAGCCCGGCATTTTCATATCGCATGTGAGTAT--------------------------------------------GGGTATATTA----ACTA-----------------------------------------------ACAGTCACCT---GCAGCA---------------GCT--------------------------------------------------------------------GG--TGAAACTTTTCGAATTAAAACACT-TGAGTGGCCGC-ACAACTTGCGAATGCAAATGAACTGC---TG---------------------------CAC---AAT-TGTTCAGAATGCAGTGGCTCGGTCGCTG------------GCTTCATTATAA--GCGGCCAAACTATGCCAG----------------------------------------CTGGCAGGCCAACCGCTTGAAACTTTCAAGTTTTTC-GACCA---TTCATA----------TTTTCTGCCA--GCAGCTAT--AAGTATAACAATTACCCTTGGGGGTTTC--------------C---CCTCAAATCCGACAGATTGTGCCCGGCGGGATTGCCTCCAAGTGCGGCAAGCTGCGCATGGGAGASizeHit CountTotal NormTotal
No Reads
droRho1
ATTCCTGTGTGCCTTTCGGCACTCGAGAGCCAGGCATTTTCATATCGCATGTAAGTAT--------------------------------------------GGGTATATTA----ACTA-----------------------------------------------ACAATTACCT---GCGGCA---------------GCTGCCCCAAAA----------------------------------------------------------AGGGGGAAAACTTTTCGAATTAAAACACT-CGAGTGGCCG---CAACTTGCGAATGCAAATGAGCTGC---TG---------------------------CAC---AAT-TGTTCAGATTGCAGTGGCTCGGACGATG------------GCTTCATTATAA--GCAGCCAAACTAAGCCAG----------------------------------------CTGCCAG--------CTTGAAACTTTCAAGTTTTTC-GACCA---TACATA----------TTTCCTGCCATTCCTGCCAT--AAGTATAACAATTGCCCTTGGGGGTTTC-----------------TCCTTAAATCCGACAGATTGTGCCCGGCGGGATTGCCTCCAAGTGCGGCAAGCTGCGCATGGGCGASizeHit CountTotal NormTotal
No Reads
droFic1
ATTCCTGTGTGCCCTTCGGCACTCGAGAGCCGGGCATTTTCATATCGCATGTAAGTAC--------------------------------------------GGCTATATTA----ACTA-----------------------------------------------ACAATCACCT---GCAGCA---------------GCTGCCACAAAAAATAAAAAATA-AA--AAAAGAG-----------------G-------------AAGGGAGGTGAAAACTTTTCGAATTAAAACACT-CGAGTGGCCG---CAACTTGCGAATGCAAATGAGCTGA-GCTGC---------------------TG---CAC---AAT-TGTTCGGAACGCAGTC------------------------GCTTCATTATGA--GCAGGCA-ACTAAGCCAG----------------------------------------CTG------------CTGGAAACTTTCAAGTTTTTC-GGCCA---TTCATA----------TTCCCTGCGA-----GCTATAAGTGTATAACAATTGCCCCCGGGC-ATTA-----------------TCCTTAAATCCGACAGATTGTGCCCGGCGGGATTGCCTCGAAGTGCGGCAAACTGCGCATGGGAGASizeHit CountTotal NormTotal
No Reads
droKik1
ATTCCTGCGTGCCCTTTGGCAGTCGAGAGCCTGGCATTTTCATATCGCATGTAAGTAGGG------------------------------------------------------------------------------------------------------------------------------------------GTAGCT--------------------------------------------------------------------G--TAAAAACTTTTTGAATTAAAACACT-CGAGTGGCCG-------------ATGCAAATGAGCTGC---TG---------------------------CAC---AAT-TGTGCAGAATCTAGTGGCTCGGACGGTG------------GCT------------------------GCCGG----------------------------------------CTGCCAA--------CTTGAAAGTTTCAAGTTTTTT-GGCCAGCCTTCAT---------------------------CTAC--AAGTATAACAATTACCCTTGGGG-GTTGCTTC----------TACCCTTTTATTCTGGCAGATTGTGCCCGGCGGGATTGCCTCGAAGTGCGGCAAGCTGCGCATGGGAGASizeHit CountTotal NormTotal
No Reads
droAna3
ATTCCTGTGTGCCCTTCGGCACCCGAGAGCCCGGAATATTCATCTCGCATGTAAGTAGAT--G-----------------------------------------AAGGATGA----ACTA-----------------------------------------------ACAATTACCC---TCAGCT---------------GCTGGCA------------------------------------------------------------------GCAAAAACTTTTCGAATTAAAACACT-CGAGCGACGG---AAACTTGCGAATGCAAATGAGTTGC---AGC------------------TCCTG---CAG---AAT-TGTTCAAAATGCAGGGGCCCAGGC--------CGGCGATGGCTCCATTATGA--GCGGTTA-ACTAAGCCAG----------------------------------------CTGCTGG--------GTCGAAACTTTTAAGTTTTCC-GGGTA---TTCATA----------ATCTCCCCA---------AT--GAGCTAATCCATGACCCTTGGGG-C------------------ACTCCTTTAATCCCCCAGATTGTTCCTGGCGGAATTGCTTCGAAGTGCGGCAAGCTGCGCATGGGCGASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAAGCTGCGCATGGGC..1812.002020000
ATTCCTGTGTGCCCTTCGGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAATTGCTTCGAAGTGCGGCAAG..............2411.001000010
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCTTCGAAGTGCGGCAAGC.............2211.001010000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTTCGAAGTGCGGCAAG..............1911.001100000
..................................................GTAAGTAGAT--G-----------------------------------------AAGGATGA----ACTA-----------------------------------------------ACAAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001010000
............................................................................................................................................................................................................................................................................................................................................................................................................GGCCCAGGC--------CGGCGATGC.........................................................................................................................................................................................................................................................................1820.501010000
droBip1
ATTCCTGTGTGCCCTTCGGCACTCGAGAGCCCGGAATATTCATCTCGCATGTAAGTAGA--CGG----------------------------------------A-GGATGA----ACTA-----------------------------------------------ACAATTACCC---TCAGCT---------------GCTGGCA-------------------------------------------------------------GCTCG--AAAAACTTTTCGAATTAAAACACT-CGAGTGGCGG---AAACTTGCGAATGCAAATGAGCTGCAGCTCC---------------TGC-------------------------------------CGGAC--TG------------GCTCTATTATGA--GCGGTTA-ACTAAGCCAG--------------------------CTGC-------CGGCT---------AC--TGTGAAACTTTCAAGTTCTAC-GGGTA---TTCATA----------ATCTCCCCA---------AT--GAGCTAATCCATGACCCTTGGGC-ACTTC-------------T---TC-TGCATCCCACAGATTGTTCCTGGCGGTATCGCCTCCAAGTGCGGCAAGCTGCGCATGGGCGASizeHit CountTotal NormTotal
No Reads
dp5
ATTCCTGTGTGCCGTTCGGCAATCGTGAGCCTGGCATCTTCATTTCACACGTAAGTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.............GTTCGGCAATCGTGAGCCTGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2113.0030300000000
.......TGTGCCGTTCGGCAATCGTGAGCCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010100000000
............CGTTCGGCAATCGTGAGCCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
............CGTTCGGCAATCGTGAGCCTGGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000001000
............CGTTCGGCAATCGTGAGCCTGGCATCTT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010100000000
droPer2
ATTCCTGTGTGCCGTTCGGCAATCGTGAGCCCGGCATCTTCATTTCACACGTAAGTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.....................ATCGTGAGCCCGGCATCTT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001010000
............CGTTCGGCAATCGTGAGCCC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001010000
....................AATCGTGAGCCCGGCATCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001010000
droWil2
ATTCCTGTGTGCCCTTTGGCACTCGTGAGCCTGGAATTTTCATTTCACATGTAAGTAGAA-TAC--------------AA----------------------AGTACAATTA----ACTAAATGCGGTTGCAAGAGTCAATGATAAACTAGACCAAACACAAATAGAAAAAAAA----------------------------AT-------------------GGGT--AGAAAAC-----------------T-------------AAGCAAAAAGAAAACTTTTCAAATTAAAACACT-TGAG---------CAACTTGCAAATGTAAATGAGCTGC---------------------------------ACAAAATT-TATACAAAATGCACTCGCTCGGACAACGACAATGACGATGGCTTCATTATAA--GCAATTA-ACTCAACCACAGCGTGTGGTGCGGGTGGTAGTTGAGTTGCGATGGGTGGGCT-------------TTTGAAACTTTCAAGTTTATA-AGCTT---TTCATTTAGTAATTCATTTTCCCCA-TT-----TC---TCGTTTTTTCTTGTTCTTTGTGT-T-------------------CTTC------TCCACAGATTGTGCCCGGCGGAATTGCTTCGAAATGCGGTAAATTGCGCATGGGAGASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCGAAATGCGGTAAATTGCG.........2315.00501400
.......................CGTGAGCCTGGAATTTTCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.00220000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTGCCCGGCGGAATTGCTT............................2211.00100100
.....................CTCGTGAGCCTGGAATTTT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00101000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCGAAATGCGGTAAATTGCGCA.......2511.00100010
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTA-ACTCAACCACAGCGTGT...................................................................................................................................................................................................................................2211.00100100
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCGGGTGGTAGTTGAGTTGCGATG........................................................................................................................................................................................................2611.00100001
.....................CTCGTGAGCCTGGAATTTTCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00110000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCGGCGGAATTGCTTCGAAAT......................2311.00100100
......................................................................................................................................................................................................................................................................................................................................................................................................TGCACTCGCTCGGACAACGAC....................................................................................................................................................................................................................................................................................2111.00110000
droVir3
ACTCCTGTGTGCCATTCGGCACACGCGAACCGGGCATTTTCATTTCACATGTAAGTAAAG-CGAACAGAAAATTGCTGAGATTGTGGTGCGGTACGGTGATGGGGGGGATGG----GCGA-----------------------------------------------GAG-------------------------------------------------------------ATGGCTTT----------T----------------AAAACTAGGGACAAACTTTTCAAACTAATGCAGTTCTCGCTGCCA---CAGCTTGCGGTTGCAAATGAGCTGC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
............CATTCGGCACACGCGAACCGGGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2318.008002100000000000000000000000000000100200000000000000000000002000
............CATTCGGCACACGCGAACCGGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.002002000000000000000000000000000000000000000000000000000000000000
...........CCATTCGGCACACGCGAACCGGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001001000000000000000000000000000000000000000000000000000000000000
............CATTCGGCACACGCGAACCGGGCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001001000000000000000000000000000000000000000000000000000000000000
............CATTCGGCACACGCGAACCGGGCATT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001100000000000000000000000000000000000000000000000000000000000000
droMoj3
ACTCCTGTGTGCCATTTGGTACACGCGAACCGGGCATTTTTATTTCACATGTAAGTCAAA-CGA--------------AA----------------------AGCGGA----------------------------------------------AAGCGAAACCCGAAAAGCGAATT---GCAGCG------------C-------------------------GGTGGGGACGGC----------GTTTCTAT-------------AAACTGGGGACAAACTTTTCAAATTAGAGCAAT-TGACGTGCCA---CAACTTGCGGTTGCAAATGAACTGC---------------------------------AC---AATTAGTTCACAGCGC----------ATGCCG------------GCATCTTTACAA--GCAATTA-AATGAACC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
ACTCCTGTGTGCCATTCGGTACTCGCGAACCGGGCATTTTCATTTCACATGTAAGTTGAA-CCACCAACGAATTTCGAAA----------------------AGGGGC----------------------------------------------AAGG----GTGG--AG-------------------------------------------------------------ATGGATGTGGGTGTGGTGTGTACCACTGCGAGGCGAAAACTAGTAACAAA--CTGCAAATTAAAGCAAT-TGAGCTGCCG---CAACTTGTGGTTGCAAATGAGCTGC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
...............TCGGTACTCGCGAACCGGGCATTTT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00110

Generated: 05/18/2015 at 09:11 AM