dsi_15957

------------------------######################################################################################################################################################################################################## GTTGCGAGCGGACCTCTGCACGGAGTGGAACAAAATCTGAAGAGCAAAGAGTACAGTCCGCGGAAAACGTTCAATTAATAGAAGCAAGAAGCCACATATATAATCTAATTATTCTCGTATATACCCCACATATATCTCGCCTGTGCATATACGAACCCCGTATATATGTATCAGTGAACAAAAAGTTGTTATACATAAAATAAATTGCGAAAGAAGAAACACCA ************************************************((((((...((((......(((........)))((.....))........................((((((.......)))))).))))))))))(((((((.....))))))).........************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M025 embryo	M024 male body	SRR902009 testis	O001 Testis	GSM343915 embryo	SRR553486 Makindu_3 day-old ovaries	SRR618934 dsim w501 ovaries	SRR553485 Chicharo_3 day-old ovaries	SRR902008 ovaries	M023 head
.............................ACAAAATCTGAAGAGCAAAGA..............................................................................................................................................................................	21	0	1	2.00	2	2	0	0	0	0	0	0	0	0	0
...............CTGCACGGAGTGGAACAAAAT............................................................................................................................................................................................	21	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0
.....................................TGAAGAGCAAAGAGTACAGTCCGCGGAA...............................................................................................................................................................	28	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0
..TGCGAGCGGACCTCTGCACGGAGTGGA...................................................................................................................................................................................................	27	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0
..................CACGGAGTGGAACAAAATCTG.........................................................................................................................................................................................	21	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................................ATCTGAAGAGCAAAGAGTA...........................................................................................................................................................................	19	0	1	1.00	1	0	0	0	1	0	0	0	0	0	0
.......................................................................................................................................................................GTATCAGTGAACAAAAAGTTGTTAT................................	25	0	1	1.00	1	0	0	0	0	1	0	0	0	0	0
..............................................AAGAGTACAGTCCGACGA................................................................................................................................................................	18	2	2	0.50	1	0	0	1	0	0	0	0	0	0	0
...........................GCACAAAGTCTGAAGAACAAA................................................................................................................................................................................	21	3	9	0.33	3	0	0	0	0	0	3	0	0	0	0
.............................................AAAGAGTACAGTCCGACGATA..............................................................................................................................................................	21	3	3	0.33	1	0	0	1	0	0	0	0	0	0	0
............................................................................AATAGAAGCAGGTAGCCA..................................................................................................................................	18	2	4	0.25	1	0	0	0	0	0	0	1	0	0	0
.........................................................................ATTAATAGAAGCAGG........................................................................................................................................	15	1	13	0.23	3	0	0	0	0	0	0	0	3	0	0
...............................................AGAGTACAGTCCGACGAAC..............................................................................................................................................................	19	3	5	0.20	1	0	0	1	0	0	0	0	0	0	0
..................GACGTAGTGGAACAAAA.............................................................................................................................................................................................	17	2	18	0.17	3	0	0	0	0	0	0	3	0	0	0
.........................................................................ATTAATAGAAGCAGGGGGC....................................................................................................................................	19	3	20	0.15	3	2	0	0	0	0	0	0	0	0	1
..............................................AAGAGTACAGTCCGACGATA..............................................................................................................................................................	20	3	8	0.13	1	0	0	0	0	0	0	0	0	1	0
.......................................................................CCATTAATAGAAGCAGG........................................................................................................................................	17	2	8	0.13	1	0	0	0	0	0	1	0	0	0	0
..................................................................................AGCAAGAAGCCACGTA..............................................................................................................................	16	1	8	0.13	1	0	0	0	0	0	0	0	1	0	0
..............................................................................................................................................................................TGAAGAGAAAGTTGTTATAAA.............................	21	3	12	0.08	1	0	0	0	0	0	1	0	0	0	0
...........................GCACAAAGTCTGAAGAACAA.................................................................................................................................................................................	20	3	13	0.08	1	0	0	0	0	0	1	0	0	0	0
...................................................................CGTGGGATTAATAGAAGCA..........................................................................................................................................	19	3	13	0.08	1	0	1	0	0	0	0	0	0	0	0
............................CACAAAGTCTGAAGAACAAA................................................................................................................................................................................	20	3	15	0.07	1	0	0	0	0	0	1	0	0	0	0
...................ACGTAGTGGAACAAA..............................................................................................................................................................................................	15	1	16	0.06	1	0	0	0	0	0	0	1	0	0	0
........................................................................GATTAATAGAAGCAGGA.......................................................................................................................................	17	2	20	0.05	1	0	0	0	0	0	1	0	0	0	0

CAACGCTCGCCTGGAGACGTGCCTCACCTTGTTTTAGACTTCTCGTTTCTCATGTCAGGCGCCTTTTGCAAGTTAATTATCTTCGTTCTTCGGTGTATATATTAGATTAATAAGAGCATATATGGGGTGTATATAGAGCGGACACGTATATGCTTGGGGCATATATACATAGTCACTTGTTTTTCAACAATATGTATTTTATTTAACGCTTTCTTCTTTGTGGT ************************************************((((((...((((......(((........)))((.....))........................((((((.......)))))).))))))))))(((((((.....))))))).........************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553485 Chicharo_3 day-old ovaries	SRR902009 testis	SRR553486 Makindu_3 day-old ovaries
.....................................................................................................................................................ATGCTTGGGGCATATATACATAGTCACTT..............................................	29	0	1	1.00	1	1	0	0
..............AGAAGTGCCCCACATTGT................................................................................................................................................................................................	18	3	20	0.55	11	11	0	0
..............AGAAGTGCCCCACATTGTT...............................................................................................................................................................................................	19	3	7	0.14	1	1	0	0
......................................................................................................................TATATGGGGTGTAGAGTGA.......................................................................................	19	3	20	0.10	2	0	2	0
...........................CGTGTTTCAGACTTCTTGT..................................................................................................................................................................................	19	3	20	0.05	1	0	0	1

Species	Coordinate	ID	Alignment
droSim2	2r:3492900-3493123 -	dsi_15957	GTTGCGAGCGGACCTCTGCACGGAGTGGAACAAAATCTGAAGAGC---AA--------------------------AGAGTACAGTCCGCGGAAAACGTTCAATTAATAGAA--GCAAGAAG-CCACAT--------------------------------------------ATATAATCTAATTATTCTCGTATA----T--------------ACCCCACATATATC--TCGCCTGTGCA---T--ATA----------CGAACCCC--GT----ATATATGTATC-AGTGAACAAAAAGTTGTTATACATAAAATAAATTGCG-AAAGA--AGAAACACCA
droSec2	scaffold_1:300472-300695 -		GTTGCGAGCGGACCTCTGCACGGAGTGGAACAAAATCTGAAGAGC---AA--------------------------AGAGTACAGTCCGCGGAAAACGTTCAATTAATAGAA--GCAAGAAG-CCACAT--------------------------------------------ATATAATCTAATTATTCTCGTATA----T--------------ACCCCACATATATC--TCGCCTGTGCA---T--ATA----------CGAACCCC--GT----ATATATGTATC-AGTGAACAAAAAGTTGTTATACATAAAATAAATTGCG-AAAGA--AGAAACACCA
dm3	chr2R:2627950-2628173 -		GTTGCGAGCGGACCTCTGCACGGAGTGGAACAAAATCTGAAGAGC---AA--------------------------AGAGTACAGTCCGCGGAAAACGTTCAATTAATAGAA--GCAAGAAA-CCACAT--------------------------------------------ATATAATCTAATTATTCTCGTATA----T--------------ACCCCACATATATC--TCGCCTGTGCA---T--ATA----------CGAACCCC--GT----ATATATGTATC-AGTGAACAAAAAGTTGTTATACATAAAATAAATTGCG-AAAGA--AGAAACACCA
droEre2	scaffold_4929:19917693-19917917 +		GTTGCGAGCGGACCTCTGCACGGAGTGGAACAAAATCTGAAGAGC---AA--------------------------AGAGTACAGTCCGCGGAAAACGTTCAATTAATAGAA--GCAAGAAG-CCACAT--------------------------------------------ATATAATCTAATTATTCTCGTATA----T--------------ACCCCACATATATT--TCGCCTGTGCA---T--ATA----------CGAACCCC--GTATACATATATGTACC-AGTGAACAAAAAGTTGTTATACATAAAATAAATTGCG-AAAG-----AAACACCA
droYak3	2L:15364504-15364731 -		GTTGCGAGCGGACCTCTGCACGGAGTGGAACAAAATCTGAAGAGC---AA--------------------------ACAGTACAGTCCGCGGAAAACGTTCAATTAATAGAA--GCAAGAAG-CCACAT--------------------------------------------ATATAATCTAATTATTCTCGTATA----T--------------ACCCCACATATATA--TCGCCTGAGCA---T--ATA----------CGAGCACC--GTATACATATATGTATC-AGTGAACAAAATGTTGTTATACATAAAATAAATTGCG-AAAGA--AGAAACACCA
droEug1	scf7180000409462:3498722-3498946 -		GTTGCGAGCGGACCTCTGCACGGAGTGGAACAAAATCTGAAAAGC---AA--------------------------AGAGTACAGTCCGCGGAAAACGTTCAATTAATAGAA--GCAAGAAG-CAATAT--------------------------------------------ATATAATCTAATTTTTCTCATATA----T--------------ACCCTACATTTATT--TCGGCTGTGTA---T--ATA----------CGAACACC--GT----ATATATGTATC-AGTGTACCAAAAGTTGTTATACATAAAATAAATTGCG-AAAGA-AAGAAATACCA
droBia1	scf7180000302292:3523705-3523910 +		GTTGCGAGCGGACCTCTGCACGGAGTGGAACAAAATCTGAAAGGC---AA--------------------------AGAGTACAGTCCGCGGAAAACGTACAATTAATAGAA--GCAAGAAG-CAATAT--------------------------------------------ATATAATCTAATTTTTCTCATATA----T--------------ACCCTACATATATT--TCGCCTGT----------------------------------------ATATGTATC-AGTGTACCAAAAGTTGTTATACATAAAATAAATTGCG-AAAGA-AAGAAATACCA
droTak1	scf7180000415420:465132-465335 +		GTTGCGAGCGGACCTCTGCACGGAGTGGAACAAAATCTGAAAGGC---AA--------------------------AGAGTACAGTCCGCGGAAAACGTACAATTAATAGAA--GCAAGAAG-CAATAT--------------------------------------------ATATAATCTAATTTTTCTCATATA----T--------------ACCCTACATATATT--TCG--------------------------------------T----ATATATGTATC-AGTGTACCAAAAGTTGTTATACATAAAATAAATTGCG-AAAGA-AAGAAATACCA
droEle1	scf7180000491217:382772-382996 +		GTTGCGAGCGGACCTCTGCACGGAGTGGAAGAAAATCTGAAAAGC---AA--------------------------ACAGTACAGTCCGCGGAAAACGTTCAATTAATAGAA--GCAAGAAG-CAATAT--------------------------------------------ATATAATCTAATTTTTCTCATATA----T--------------ACCCCACATATATT--TCGGCTGTGTA---T--ATA----------CGAACACC--GT----ATATATGTACCAAGTGTACCAAAAGTTGTTATACATAAAATAAATTGCG-AAAGA--AGAAATATCA
droRho1	scf7180000766551:26449-26654 +		GTTGCGAGCGGACCTCTGCACGGAGTGGAACAAAATCTGAAAAGC---AA--------------------------AGAGTACAGTCCGCGGAAAACGTTCAATTAATAGAA--GCAAGAAG-CAATAT--------------------------------------------ATATAATCTAATTTTTCTCATCTA----T--------------ACCCTACATATATT--TCGGCTGT----------------------------------------ATATGTATC-AGTGTACCAAAAGTTGTTATACATAAAATAAATTGCG-AAAGA-AAGAAATACCA
droFic1	scf7180000453955:672016-672237 +		GTCGCGAGCGGACCTCTGCACGGAGTGGAACAAAGTCAGAAAAGC---GA--------------------------AGAGAACAGTCCGCGGAAAACGTTCAATTAATAGCA--GC--GAAG-CCACAT--------------------------------------------ATATAATCTAATTTTTCTCATATA----T--------------ACCCCACATATATT--TCGGCTGTGTA---T--ATA----------CGAGCACC--GT----GTATATGTATC-AGTGTACCAAAAGTTGTTATACATAAAATAAGTTGCG-AAAGA--AGAAATACCA
droKik1	scf7180000302470:187758-187978 -		GTTGCGAGCGGACCTCTGCACGGAGTGGAACAAAATCAGAAAGGC---AA--------------------------AGAGTACAGTCCGCGGAAATCGTTCAATTAATAGAA-AGCAAGAAAAATACAT--------------------------------------------ATATA-----ATT-TTCCCATATA----T--------------ACCCTATATATATA--TCGCCTGTATA---T--ATA----------CGAGCCCC--GT----ATGTATGTATC-AGTGTACCAAAAGTTGTTATACATAAAATAAATTGCG-AAAGA-AAGAAATACCA
droAna3	scaffold_13266:18380350-18380586 +		GTTGCGAGCGGACCTCTGCACGGAGTGGAACAAAATCTGAAAACC----T--------------------------AGAGTACAGTCCGCGGAAAACGTTCAATC-ACAGAA-AGCAAGAAT-AAATATACAC----------------------------------------ATATATTCTAATT-TTCTCATATGTATAT--------------ACCCTATATATATTTTTCGCCCGTATAATATAAATA----------CGAACAAC--GC----ATATATGTATC-AGTGTACCAAAAGTTGTTATACATAAAATAAATTGCG-AAAGA--AGAAATACCA
droBip1	scf7180000396735:1652480-1652708 +		GTTGCGAGCGGACCTCTGCACGGAGTGGAACAAAATCTGAAAACC----T--------------------------AGAGTACAGTCCGCGGAAAACGTTCAATTCACAGAA-AGCAAGAAT-AAATATATAC----------------------------------------ATATATTCTAATT-TTCTCATATA----T--------------ATCCTATATATATTTTTCGCCCGTATA---A--ATA----------CGAACAAC--GC----ATATATGTATC-AGTGTACCAAAAGTTGTTATACATAAAATAAATTGCG-AAAGA--AGAAATACCA
dp5	3:897778-898006 -		GTTGCGAGCGGACCTCTGCACGGAGTGGAACAAAATCTGAAAACC---AAT-------------------------AGAGTACAGTCCGCGGAAAACGTTCATTTAATAGAAGAGCAAGAAAAATATAT--------------------------------------------ATATAATCTAATTTTTCTCATATA----T--------------ACCCTATATATATT--CTGCCTGTGTA---T--ATA----------TGAACATA--AT----ATATATGCATC-AGTGTACCAAAAATTGTTATACATAAAATAAATTGCG-AAAGA-AAGAAATACCA
droPer2	scaffold_2:1074321-1074549 -		GTTGCGAGCGGACCTCTGCACGGAGTGGAACAAAATCTGAAAACC---AAT-------------------------AGAGTACAGTCCGCGGAAAACGTTCATTTAATAGAAGAGCAAGAAAAATATAT--------------------------------------------ATATAATCTAATTTTTCTCATATA----T--------------ACCCTATATATATT--CTGCCTGTGTA---T--ATA----------TGAACATA--AT----ATATATGCATC-AGTGTACCAAAAATTGTTATACATAAAATAAATTGCG-AAAGA-AAGAAATACCA
droWil2	scf2_1100000004558:177301-177576 +		GTTGCGAGCGGACCTCTGCACGGAGTGGAACCAAATCTGAAAAACT--AACAAAAAAAAAAAAAAAATAAGGAAGAAGAGTACAGTCCGCGGAAAACGTTCAATTAA-AGAA--ATTAGAAACATATATATATATATATATATAATCCCACACATATATATATGTATATGTGTATATAATCCAATTTTTCTCATATACATAT--------------A-TCTATATAT--T-TTTGCTTGTATA---T--ACATACATATTT--G---TTC--AT----ACATATGTATC-AGTGTACCAAA-------------------------GAAAAGAAAAGAAAT----
droVir3	scaffold_12875:15540408-15540629 -		GTTGCGAGCGGACCTCTGCACGGAGTGGAACAAAAT-TGAAAAACTAAAA--------------------------AGAGTACAGTCCGCGGAAAACATTCAATTAATAGAA--ATATATAT-ACATAT------ATAC----A----------TATGTATATATATATTTATATATAATCTAATT-TTCTCATATATA--T--------------AACCTATATATATT-TTTGCCTGTATA---T--ATA----------TGCGCACAAAG------TATATGTATT-AGTGTAC---------------------------GCG-AAAG-----AAATAAGA
droMoj3	scaffold_6496:8267828-8268050 +		GTTGCGAGCGGACCTCTGCACGGAGTGGAACAAAAT-TGAAAAACTGAAA--------------------------AGAGTACAGTCCGCGGAAAACATTCAATTAATAGAA--A-----AT-TCACATACATATATATATACATATCTC----TATGTATATATATATACTTTTATAATCTAATT-TTCTCATATA----TATACATATATATATAACCTATATATATT-TTCGCCC--------------------------------------------ATGTATT-TGTGTAC---------------------------GCG-AATGA--AATAAGAT--
droGri2	scaffold_15245:12335227-12335466 -		GTTGCGAGCGGACCTCTGCACGGAGTGGAACAAAAT-TGAAAAACTGAAA--------------------------AGAGTACAGTCCGCGGAAAACATTCAATTAATAGAA--ATATATAA-ATACAT----ATATATATATATTTTTA----TATGTATATATATATATATATATAATCTAATT-TTCTCACATA----T--------------ACCCTATATATATT-TTTGACTGTATA---T--ATATATATATATGCGCACAAA--GA------ATATGTATT-AGTGTAC---------------------------GCC-AAA-----GAAATAAGA

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

GTTGCGAGCGGACCTCTGCACGGAGTGGAACAAAATCTGAAGAGC---AA--------------------------AGAGTACAGTCCGCGGAAAACGTTCAATTAATAGAA--GCAAGAAG-CCACAT--------------------------------------------ATATAATCTAATTATTCTCGTATA----T--------------ACCCCACATATATC--TCGCCTGTGCA---T--ATA----------CGAACCCC--GT----ATATATGTATC-AGTGAACAAAAAGTTGTTATACATAAAATAAATTGCG-AAAGA--AGAAACACCA	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
.............................ACAAAATCTGAAGAGC---AA--------------------------AGA..........................................................................................................................................................................................................................................................................	21	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............CTGCACGGAGTGGAACAAAAT.....................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................TGAAGAGC---AA--------------------------AGAGTACAGTCCGCGGAA...........................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..TGCGAGCGGACCTCTGCACGGAGTGGA............................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................CACGGAGTGGAACAAAATCTG..................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................ATCTGAAGAGC---AA--------------------------AGAGTA.......................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................GTATC-AGTGAACAAAAAGTTGTTAT...................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0

droSec2

GTTGCGAGCGGACCTCTGCACGGAGTGGAACAAAATCTGAAGAGC---AA--------------------------AGAGTACAGTCCGCGGAAAACGTTCAATTAATAGAA--GCAAGAAG-CCACAT--------------------------------------------ATATAATCTAATTATTCTCGTATA----T--------------ACCCCACATATATC--TCGCCTGTGCA---T--ATA----------CGAACCCC--GT----ATATATGTATC-AGTGAACAAAAAGTTGTTATACATAAAATAAATTGCG-AAAGA--AGAAACACCA	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
.....................................................................................................AATTAATAGAA--GCAAGAAG-C.............................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0
................................................AA--------------------------AGAGTACAGTCCGCGG.............................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0
................................................................................TACAGTCCGCGGAAAACGTTCA...................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0
.................................................A--------------------------AGAGTACAGTCCGCGGAAAACGTTCA...................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0
.................................................A--------------------------AGAGTACAGTCCGCGGAAAACGTTCAA..................................................................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0
..................................ATCTGAAGAGC---AA--------------------------AGAGTACAGTCC.................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0
.............................................................................GAGTACAGTCCGCGGAAAACGTTC....................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0
...............................................................................GTACAGTCCGCGGAAAAC........................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0
............................................................................AGAGTACAGTCCGCGGAAAACG.......................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0

dm3

GTTGCGAGCGGACCTCTGCACGGAGTGGAACAAAATCTGAAGAGC---AA--------------------------AGAGTACAGTCCGCGGAAAACGTTCAATTAATAGAA--GCAAGAAA-CCACAT--------------------------------------------ATATAATCTAATTATTCTCGTATA----T--------------ACCCCACATATATC--TCGCCTGTGCA---T--ATA----------CGAACCCC--GT----ATATATGTATC-AGTGAACAAAAAGTTGTTATACATAAAATAAATTGCG-AAAGA--AGAAACACCA	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.................................AATCTGAAGAGC---AA--------------------------AGAG.........................................................................................................................................................................................................................................................................	18	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................AATTAATAGAA--GCAAGAAA-CCA...........................................................................................................................................................................................................................	22	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................GGAACAAAATCTGAAGAG.............................................................................................................................................................................................................................................................................................................	18	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................GTCCGCGGAAAACGTTCA...................................................................................................................................................................................................................................................	18	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................AGAAA-CCACAT--------------------------------------------ATATAATCTA..................................................................................................................................................................	21	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................AAATCTGAAGAGC---AA--------------------------AGAG.........................................................................................................................................................................................................................................................................	19	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................AACAAAATCTGAAGAGC---AA--------------------------AGAG.........................................................................................................................................................................................................................................................................	23	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.TTGCGAGCGGACCTCTGCACGGAGT...............................................................................................................................................................................................................................................................................................................................	25	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
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...........................................GC---AA--------------------------AGAGTACAGTCCGCGGA............................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................ATC--TCGCCTGTGCA---T--ATA----------CGAACCC............................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................CGCCTGTGCA---T--ATA----------CGAACCCC--.........................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................TC--TCGCCTGTGCA---T--ATA----------CGAACCC............................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................GCACGGAGTGGAACAAAAT.....................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................AGC---AA--------------------------AGAGTACAGTCCG................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................ATC--TCGCCTGTGCA---T--ATA----------...................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................AATTGCG-AAAGA--AGAAACACC.	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

GTTGCGAGCGGACCTCTGCACGGAGTGGAACAAAATCTGAAGAGC---AA--------------------------AGAGTACAGTCCGCGGAAAACGTTCAATTAATAGAA--GCAAGAAG-CCACAT--------------------------------------------ATATAATCTAATTATTCTCGTATA----T--------------ACCCCACATATATT--TCGCCTGTGCA---T--ATA----------CGAACCCC--GTATACATATATGTACC-AGTGAACAAAAAGTTGTTATACATAAAATAAATTGCG-AAAG-----AAACACCA	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
.........................................................................................................................................................................................................................................................ATA----------CGAACCCC--GTATACATATATG............................................................	24	1	1.00	1	0	1	0	0	0	0	0
.................................................A--------------------------AGAGTACAGTCCGCGGAAAACGTTCA...................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	1	0
.................................................................................................................................................................................................................................................................................................................GTTATACATAAAATAAATTGCG-AAAG-----........	26	1	1.00	1	0	0	0	0	0	1	0
...................................................................................AGTCCGCGGAAAACGTTCAA..................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0	0
.....................................................................................................................................................................................................................................T--TCGCCTGTGCA---T--ATA----------CGAACCCC--G........................................................................	25	1	1.00	1	1	0	0	0	0	0	0
................................AAATCTGAAGAGC---AA--------------------------AGAGTACAGTCC.................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0	0
.......................................AAGAGC---AA--------------------------AGAGTACAGTCCGCGGAAAAC........................................................................................................................................................................................................................................................	29	1	1.00	1	0	1	0	0	0	0	0
............................................C---AA--------------------------AGAGTACAGTCCGCGGAA...........................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0	0	0
GTTGCGAGCGGACCTCTG.......................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0	0
.................................................................................ACAGTCCGCGGAAAACGTT.....................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0	0	0
................................................................................TACAGTCCGCGGAAAACGTTCAA..................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	1	0	0

droYak3

GTTGCGAGCGGACCTCTGCACGGAGTGGAACAAAATCTGAAGAGC---AA--------------------------ACAGTACAGTCCGCGGAAAACGTTCAATTAATAGAA--GCAAGAAG-CCACAT--------------------------------------------ATATAATCTAATTATTCTCGTATA----T--------------ACCCCACATATATA--TCGCCTGAGCA---T--ATA----------CGAGCACC--GTATACATATATGTATC-AGTGAACAAAATGTTGTTATACATAAAATAAATTGCG-AAAGA--AGAAACACCA	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
...........................................................................................GAAAACGTTCAATTAATAGAA--.......................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..........................................AGC---AA--------------------------ACAGTACAGTCCGC...............................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................CCCACATATATA--TCGCCTGAGCA---T--ATA----------CG.................................................................................	29	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...............................................................................GTACAGTCCGCGGAAAACGTTCA...................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
................................AAATCTGAAGAGC---AA--------------------------ACAG.........................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
............CCTCTGCACGGAGTGGAACAA........................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
............CCTCTGCACGGAGTGGAAC..........................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................AATTGCG-AAAGA--AGAAACACC.	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
............................AACAAAATCTGAAGAGC---AA--------------------------AC...........................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.................................................................................ACAGTCCGCGGAAAACGT......................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................ATC-AGTGAACAAAATGTTGTTATACATAA.............................	29	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.................................................A--------------------------ACAGTACAGTCCGCGGAA...........................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.................................................................................................................................................................................AATCTAATTATTCTCGTAT.....................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
..............................CAAAATCTGAAGAGC---AA--------------------------AC...........................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................CCACATATATA--TCGCCTGAGCA---...................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................ATAAAATAAATTGCG-AAAGA--AGAAACACC.	29	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..................CACGGAGTGGAACAAAATCTGAAGAGC---.........................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.........................TGGAACAAAATCTGAAGAGC---A........................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.................................................A--------------------------ACAGTACAGTCCGCGGAAAACG.......................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0

droEug1

GTTGCGAGCGGACCTCTGCACGGAGTGGAACAAAATCTGAAAAGC---AA--------------------------AGAGTACAGTCCGCGGAAAACGTTCAATTAATAGAA--GCAAGAAG-CAATAT--------------------------------------------ATATAATCTAATTTTTCTCATATA----T--------------ACCCTACATTTATT--TCGGCTGTGTA---T--ATA----------CGAACACC--GT----ATATATGTATC-AGTGTACCAAAAGTTGTTATACATAAAATAAATTGCG-AAAGA-AAGAAATACCA	Size	Hit Count	Total Norm	Total
No Reads

droBia1

GTTGCGAGCGGACCTCTGCACGGAGTGGAACAAAATCTGAAAGGC---AA--------------------------AGAGTACAGTCCGCGGAAAACGTACAATTAATAGAA--GCAAGAAG-CAATAT--------------------------------------------ATATAATCTAATTTTTCTCATATA----T--------------ACCCTACATATATT--TCGCCTGT----------------------------------------ATATGTATC-AGTGTACCAAAAGTTGTTATACATAAAATAAATTGCG-AAAGA-AAGAAATACCA	Size	Hit Count	Total Norm	Total
No Reads

droTak1

GTTGCGAGCGGACCTCTGCACGGAGTGGAACAAAATCTGAAAGGC---AA--------------------------AGAGTACAGTCCGCGGAAAACGTACAATTAATAGAA--GCAAGAAG-CAATAT--------------------------------------------ATATAATCTAATTTTTCTCATATA----T--------------ACCCTACATATATT--TCG--------------------------------------T----ATATATGTATC-AGTGTACCAAAAGTTGTTATACATAAAATAAATTGCG-AAAGA-AAGAAATACCA	Size	Hit Count	Total Norm	Total
No Reads

droEle1

GTTGCGAGCGGACCTCTGCACGGAGTGGAAGAAAATCTGAAAAGC---AA--------------------------ACAGTACAGTCCGCGGAAAACGTTCAATTAATAGAA--GCAAGAAG-CAATAT--------------------------------------------ATATAATCTAATTTTTCTCATATA----T--------------ACCCCACATATATT--TCGGCTGTGTA---T--ATA----------CGAACACC--GT----ATATATGTACCAAGTGTACCAAAAGTTGTTATACATAAAATAAATTGCG-AAAGA--AGAAATATCA	Size	Hit Count	Total Norm	Total
No Reads

droRho1

GTTGCGAGCGGACCTCTGCACGGAGTGGAACAAAATCTGAAAAGC---AA--------------------------AGAGTACAGTCCGCGGAAAACGTTCAATTAATAGAA--GCAAGAAG-CAATAT--------------------------------------------ATATAATCTAATTTTTCTCATCTA----T--------------ACCCTACATATATT--TCGGCTGT----------------------------------------ATATGTATC-AGTGTACCAAAAGTTGTTATACATAAAATAAATTGCG-AAAGA-AAGAAATACCA	Size	Hit Count	Total Norm	Total
No Reads

droFic1

GTCGCGAGCGGACCTCTGCACGGAGTGGAACAAAGTCAGAAAAGC---GA--------------------------AGAGAACAGTCCGCGGAAAACGTTCAATTAATAGCA--GC--GAAG-CCACAT--------------------------------------------ATATAATCTAATTTTTCTCATATA----T--------------ACCCCACATATATT--TCGGCTGTGTA---T--ATA----------CGAGCACC--GT----GTATATGTATC-AGTGTACCAAAAGTTGTTATACATAAAATAAGTTGCG-AAAGA--AGAAATACCA	Size	Hit Count	Total Norm	Total
No Reads

droKik1

GTTGCGAGCGGACCTCTGCACGGAGTGGAACAAAATCAGAAAGGC---AA--------------------------AGAGTACAGTCCGCGGAAATCGTTCAATTAATAGAA-AGCAAGAAAAATACAT--------------------------------------------ATATA-----ATT-TTCCCATATA----T--------------ACCCTATATATATA--TCGCCTGTATA---T--ATA----------CGAGCCCC--GT----ATGTATGTATC-AGTGTACCAAAAGTTGTTATACATAAAATAAATTGCG-AAAGA-AAGAAATACCA	Size	Hit Count	Total Norm	Total
No Reads

droAna3

GTTGCGAGCGGACCTCTGCACGGAGTGGAACAAAATCTGAAAACC----T--------------------------AGAGTACAGTCCGCGGAAAACGTTCAATC-ACAGAA-AGCAAGAAT-AAATATACAC----------------------------------------ATATATTCTAATT-TTCTCATATGTATAT--------------ACCCTATATATATTTTTCGCCCGTATAATATAAATA----------CGAACAAC--GC----ATATATGTATC-AGTGTACCAAAAGTTGTTATACATAAAATAAATTGCG-AAAGA--AGAAATACCA	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
............................................................................AGAGTACAGTCCGCGGAAAACGTTCA...................................................................................................................................................................................................................................................	26	1	2.00	2	0	0	0	0	0	2
GTTGCGAGCGGACCTCTGCACGGAG................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	1	0
..................................................................................................................................................................................................................................................AATATAAATA----------CGAACAAC--GC----ATATATGT...........................................................	28	1	1.00	1	0	1	0	0	0	0
....CGAGCGGACCTCTGCACGGAGTGG.............................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0
..............................................................................................................................................................................................................................................................................................ATC-AGTGTACCAAAAGTTGT......................................	20	1	1.00	1	0	0	1	0	0	0
........................................................................................................................................................................................................................................................AATA----------CGAACAAC--GC----ATATATGT...........................................................	22	1	1.00	1	0	1	0	0	0	0
............................................................................................AAAACGTTCAATC-ACAGAA-AGCAAGA.................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0
.....................................................................................................AATC-ACAGAA-AGCAAGAAT-A.............................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0
...GCGAGCGGACCTCTGCACGGA.................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
...............................................................................GTACAGTCCGCGGAAAAC........................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0
...................................................................................................TCAATC-ACAGAA-AGCAAGA.................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0
..........................................................................................................ACAGAA-AGCAAGAAT-AAATATACA.....................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1
......................................................................................................ATC-ACAGAA-AGCAAGAAT-AAATA.........................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	1	0
.......................................AAAACC----T--------------------------AGAGTACAGTCCGCGGAA...........................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
.....................................................................................................AATC-ACAGAA-AGCAAGAAT-AAAT..........................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1

droBip1

GTTGCGAGCGGACCTCTGCACGGAGTGGAACAAAATCTGAAAACC----T--------------------------AGAGTACAGTCCGCGGAAAACGTTCAATTCACAGAA-AGCAAGAAT-AAATATATAC----------------------------------------ATATATTCTAATT-TTCTCATATA----T--------------ATCCTATATATATTTTTCGCCCGTATA---A--ATA----------CGAACAAC--GC----ATATATGTATC-AGTGTACCAAAAGTTGTTATACATAAAATAAATTGCG-AAAGA--AGAAATACCA	Size	Hit Count	Total Norm	Total
No Reads

dp5

GTTGCGAGCGGACCTCTGCACGGAGTGGAACAAAATCTGAAAACC---AAT-------------------------AGAGTACAGTCCGCGGAAAACGTTCATTTAATAGAAGAGCAAGAAAAATATAT--------------------------------------------ATATAATCTAATTTTTCTCATATA----T--------------ACCCTATATATATT--CTGCCTGTGTA---T--ATA----------TGAACATA--AT----ATATATGCATC-AGTGTACCAAAAATTGTTATACATAAAATAAATTGCG-AAAGA-AAGAAATACCA	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
......AGCGGACCTCTGCACGGAGTGGAACA.........................................................................................................................................................................................................................................................................................................................	26	1	2.00	2	0	2	0	0	0	0	0	0	0	0
........................................................................................................TAATAGAAGAGCAAGAAAAA.............................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1	0	0	0	0
..............................................................................AGTACAGTCCGCGGAAAACGTTCA...................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0
..........................................ACC---AAT-------------------------AGAGTACAGTCCGC...............................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........................................ACC---AAT-------------------------AGAGTACAGTCCGCGGA............................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0
................................................AAT-------------------------AGAGTACAGTCCGCGGAAAA.........................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0
............................................................................AGAGTACAGTCCGCGGAAAACGTTCAT..................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	1	0	0	0	0
....................................................................................................................................................................................................A----T--------------ACCCTATATATATT--CTGCCTGTGT.......................................................................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................T--CTGCCTGTGTA---T--ATA----------TGAACA.............................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................T----ATATATGCATC-AGTGTACC...............................................	20	1	1.00	1	0	0	0	1	0	0	0	0	0	0
................................................AAT-------------------------AGAGTACAGTCCGCGGAAA..........................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1	0	0	0	0
..................................................................................................................................................................................................................................TATT--CTGCCTGTGTA---T--ATA----------TG.................................................................................	21	1	1.00	1	0	0	0	0	0	1	0	0	0	0
.............................................................................................................................................................................................................................................................................A--AT----ATATATGCATC-AGTGTACC...............................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................CTGCCTGTGTA---T--ATA----------TGAACATA--.........................................................................	23	1	1.00	1	0	0	0	0	1	0	0	0	0	0
..........................GGAACAAAATCTGAAAACC---AAT-------------------------AGAGTA.......................................................................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................TA--AT----ATATATGCATC-AGTGTACCAAAAATT........................................	30	1	1.00	1	0	0	0	0	0	0	1	0	0	0

droPer2

GTTGCGAGCGGACCTCTGCACGGAGTGGAACAAAATCTGAAAACC---AAT-------------------------AGAGTACAGTCCGCGGAAAACGTTCATTTAATAGAAGAGCAAGAAAAATATAT--------------------------------------------ATATAATCTAATTTTTCTCATATA----T--------------ACCCTATATATATT--CTGCCTGTGTA---T--ATA----------TGAACATA--AT----ATATATGCATC-AGTGTACCAAAAATTGTTATACATAAAATAAATTGCG-AAAGA-AAGAAATACCA	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
.............................................................................GAGTACAGTCCGCGGAAAACGTT.....................................................................................................................................................................................................................................................	23	1	2.00	2	0	0	1	0	0	1
..........................GGAACAAAATCTGAAAACC---AAT-------------------------AGA..........................................................................................................................................................................................................................................................................	25	1	2.00	2	2	0	0	0	0	0
...GCGAGCGGACCTCTGCACGGAGT...............................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1
......................................................................................................................................................................................................................................................................................ATATATGCATC-AGTGTACC...............................................	19	1	1.00	1	0	0	0	0	1	0
..........................................ACC---AAT-------------------------AGAGTACAGTCCG................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0
...............................................................................GTACAGTCCGCGGAAAACGTTCA...................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1
.................................................AT-------------------------AGAGTACAGTCCGCGGAAAA.........................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1
..................................................T-------------------------AGAGTACAGTCCGCGGAAA..........................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1
.............................................................................GAGTACAGTCCGCGGAAA..........................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0	0
...........................................................................................................................................................................................................................................................A----------TGAACATA--AT----ATATATGCATC-.......................................................	22	1	1.00	1	1	0	0	0	0	0
...GCGAGCGGACCTCTGCACGGAGTGGA............................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
.................................................................................................................................................................................................................................ATATT--CTGCCTGTGTA---T--ATA----------...................................................................................	20	1	1.00	1	0	0	1	0	0	0

droWil2

GTTGCGAGCGGACCTCTGCACGGAGTGGAACCAAATCTGAAAAACT--AACAAAAAAAAAAAAAAAATAAGGAAGAAGAGTACAGTCCGCGGAAAACGTTCAATTAA-AGAA--ATTAGAAACATATATATATATATATATATAATCCCACACATATATATATGTATATGTGTATATAATCCAATTTTTCTCATATACATAT--------------A-TCTATATAT--T-TTTGCTTGTATA---T--ACATACATATTT--G---TTC--AT----ACATATGTATC-AGTGTACCAAA-------------------------GAAAAGAAAAGAAAT----	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
.......GCGGACCTCTGCACGGAGTGGAACC.........................................................................................................................................................................................................................................................................................................................	25	1	2.00	2	2	0	0	0	0
......................GAGTGGAACCAAATCTGAAAAACT--.........................................................................................................................................................................................................................................................................................................	24	1	2.00	2	2	0	0	0	0
........................................................................AAGAAGAGTACAGTCCGCGGA............................................................................................................................................................................................................................................................	21	1	2.00	2	0	0	2	0	0
.......................................................................................................................................................................................................................................................................................CATATGTATC-AGTGTACCAAA-------------------------...................	21	1	1.00	1	0	0	0	1	0
..........................................................................GAAGAGTACAGTCCGCGGAAAACGTTCA...................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	1	0	0
..............................................................................................................................................................................................................................................................................................ATC-AGTGTACCAAA-------------------------GAAAAGA............	21	1	1.00	1	0	0	0	1	0
..............TCTGCACGGAGTGGAACCAAATC....................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0
..........................................................AAAAAAAAATAAGGAAGAAG...........................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0
..............................................................AAAAATAAGGAAGAAGAG.........................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0
...............................................................AAAATAAGGAAGAAGAGTAC......................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1
.....................................................................................................................................................................................................................................................................................................GTACCAAA-------------------------GAAAAGAAAAGAA......	21	1	1.00	1	0	0	0	1	0
.........................................................................AGAAGAGTACAGTCCGCG..............................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0
..............................................................................................................................................................................................................................................................................................ATC-AGTGTACCAAA-------------------------GAAAAGAAAA.........	24	1	1.00	1	0	0	0	1	0
..............TCTGCACGGAGTGGAACC.........................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0
..................................................................ATAAGGAAGAAGAGTACAGTCCGCGG.............................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0
....................................................................AAGGAAGAAGAGTACAGT...................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0
..............................................................................AGTACAGTCCGCGGAAAA.........................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0
.............................................................AAAAAATAAGGAAGAAGAGT........................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0
..................................................................ATAAGGAAGAAGAGTACAGTCCG................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0
..............................................................................................................................................................................................................................................................................................ATC-AGTGTACCAAA-------------------------GAAA...............	18	1	1.00	1	0	0	0	1	0
..............................................................................................................................................................................................................................................................................................ATC-AGTGTACCAAA-------------------------GAAAAGAAAAGA.......	26	1	1.00	1	0	0	1	0	0
.........................................................................................................................................................................................................T--------------A-TCTATATAT--T-TTTGCTA...........................................................................................................	19	5	0.20	1	0	0	0	1	0

droVir3

GTTGCGAGCGGACCTCTGCACGGAGTGGAACAAAAT-TGAAAAACTAAAA--------------------------AGAGTACAGTCCGCGGAAAACATTCAATTAATAGAA--ATATATAT-ACATAT------ATAC----A----------TATGTATATATATATTTATATATAATCTAATT-TTCTCATATATA--T--------------AACCTATATATATT-TTTGCCTGTATA---T--ATA----------TGCGCACAAAG------TATATGTATT-AGTGTAC---------------------------GCG-AAAG-----AAATAAGA	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
..............................................AAAA--------------------------AGAGTACAGTCCGCGGAA...........................................................................................................................................................................................................................................................	22	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................AGAGTACAGTCCGCGGAA...........................................................................................................................................................................................................................................................	18	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
..TGCGAGCGGACCTCTGCACGGAGTG..............................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................ACGGAGTGGAACAAAAT-TGA.................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................TAAAA--------------------------AGAGTACAGTCCGCGGAAA..........................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............CTGCACGGAGTGGAACAAAAT-TGAAA...............................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................GTAC---------------------------GCG-AAAG-----AAATAAGA	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................A--------------------------AGAGTACAGTCCGCGGAAA..........................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......AGCGGACCTCTGCACGGAGTGGAAC..........................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................A--------------------------AGAGTACAGTCCGCGGAA...........................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................ATA---T--ATA----------TGCGCACAAAG------TATAT.............................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................A--------------------------AGAGTACAGTCCGCGGAAAA.........................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................A--------------------------AGAGTACAGTCCGCGGAAAACA.......................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................ATT-AGTGTAC---------------------------GCG-AAAG-----AA......	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................GCACGGAGTGGAACAAAAT-TGAAA...............................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................CACAAAG------TATATGTATT-AGTGTAC---------------------------.....................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......AGCGGACCTCTGCACGGAGTG..............................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
..............................................................................AGTACAGTCCGCGGAAAACATTCA...................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................GCACGGAGTGGAACAAAAT-TGAAAA..............................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....CGAGCGGACCTCTGCACGGAGTGGAAC..........................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................AA--------------------------AGAGTACAGTCCGCGGAAAAC........................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................GCACGGAGTGGAACAAAAT-TGAAAAAC............................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
.....GAGCGGACCTCTGCACGGAGT...............................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
....................CGGAGTGGAACAAAAT-TGAAA...............................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................AA--------------------------AGAGTACAGTCCGCGGAAAACATTC....................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................CGGAGTGGAACAAAAT-TGAAAAA.............................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................ATAT-ACATAT------ATAC----A----------TATGT..........................................................................................................................................................................................	20	19	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

GTTGCGAGCGGACCTCTGCACGGAGTGGAACAAAAT-TGAAAAACTGAAA--------------------------AGAGTACAGTCCGCGGAAAACATTCAATTAATAGAA--A-----AT-TCACATACATATATATATACATATCTC----TATGTATATATATATACTTTTATAATCTAATT-TTCTCATATA----TATACATATATATATAACCTATATATATT-TTCGCCC--------------------------------------------ATGTATT-TGTGTAC---------------------------GCG-AATGA--AATAAGAT--	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
.....GAGCGGACCTCTGCACGGAGT...............................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
...................................................................................................................................................................................................................................ATT-TTCGCCC--------------------------------------------ATGTATT-TGT....................................................	20	1	1.00	1	1	0	0	0	0	0
................TGCACGGAGTGGAACAAAAT-TGAA................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
.................................AAT-TGAAAAACTGAAA--------------------------AGAGTACA.....................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
.................................................A--------------------------AGAGTACAGTCCGCGGAAA..........................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1

droGri2

GTTGCGAGCGGACCTCTGCACGGAGTGGAACAAAAT-TGAAAAACTGAAA--------------------------AGAGTACAGTCCGCGGAAAACATTCAATTAATAGAA--ATATATAA-ATACAT----ATATATATATATTTTTA----TATGTATATATATATATATATATAATCTAATT-TTCTCACATA----T--------------ACCCTATATATATT-TTTGACTGTATA---T--ATATATATATATGCGCACAAA--GA------ATATGTATT-AGTGTAC---------------------------GCC-AAA-----GAAATAAGA	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

dsi_15957

2r:3492950-3493073 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads