ID:

dsi_15952

 Coordinate:

2r:9206888-9207157 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-64.5 -64.5 -64.5

Flybase annnotation

exon [2r_9207158_9208217_+]; CDS [2r_9207158_9207238_+]; exon [2r_9206745_9206887_+]; CDS [2r_9206745_9206887_+]; intron [2r_9206888_9207157_+]

No Repeatable elements found

Sense Strand Reads

##################################################------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
AGATCGGTGACCTTATTCGCGTTATTGAGTACGACGATCCCGAGGATCAGGTAAAGTGGTTTGGGTTGGGTTGGTATACCCTTTGCAAATGATGTAATTATATAACTTCAAACTACTTTCAATGTTAATGGAATATATCATTCCCTTAATTTTAGTAAACTAAACTTGTTAGATACTATCATTTGCAAGGGTATGACTTCGGAATCCGGAGATACACACTCCCTCGAGCTTTGCACGCGCTAGTTTCCCCCTCCGCGCCAAATGCAGATCTCCGCACTTCCTGTCTATATTGAATTCAGTTCTTTATTGCCAACTTACAGGAGGAGGGCTGGCTGATGGGTCAGAAGGAGGGCACCAACGAGAAGGGACT
**************************************************................(((((((((((((((((.((((((((((((.(((.((((........((((......(((((.(((((.....))))).)))))...))))........))))))).))).)))))))))))))))).(((...((((..(((((((.....(((....)))..(((((.((((..............))))....))))))))))))...)))).))).(((..((((...))))..)))))))))))))...************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR902009
testis
 M023
head
 M025
embryo
 M053
female body
 O002
Head
 SRR553485
Chicharo_3 day-old ovaries
 SRR1275483
Male prepupae		 SRR618934
dsim w501 ovaries
 GSM343915
embryo
 SRR902008
ovaries
 SRR1275487
Male larvae		 M024
male body
...........................AGTCCGACGATCCCGA....................................................................................................................................................................................................................................................................................................................................... 16 1 3 29.67 89 69 13 6 0 0 0 0 0 1 0 0 0 0 0 0
............................GTCCGACGATCCCGA....................................................................................................................................................................................................................................................................................................................................... 15 1 8 12.38 99 87 10 2 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................................................................................GGAGGAGGGCTGGCTGATGGG.............................. 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................................................................AGGGCTGGCTGATGGGTCAGA......................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................................................TCTTTATTGCCAACTTACAG.................................................. 20 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0
....................GTTATTGAGTACGACGATCCCGAG...................................................................................................................................................................................................................................................................................................................................... 24 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
...........................AGTCCGACGATCCCGAG...................................................................................................................................................................................................................................................................................................................................... 17 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................AGTCCGACGATCCCGACGATCA................................................................................................................................................................................................................................................................................................................................. 22 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...........................AGTCCGACGATCCCGAGG..................................................................................................................................................................................................................................................................................................................................... 18 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................TGATTGAGTACGACGATCCCGAGGA.................................................................................................................................................................................................................................................................................................................................... 25 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................ATTGAGTACGACGATCCCGAGGATCAGGA.............................................................................................................................................................................................................................................................................................................................. 29 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...........................AGTCCGACGATCTCGAGGA.................................................................................................................................................................................................................................................................................................................................... 19 2 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...........................AGTCCGACGATCCCG........................................................................................................................................................................................................................................................................................................................................ 15 1 6 0.50 3 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0
............................GTCCGACGATCCCGAG...................................................................................................................................................................................................................................................................................................................................... 16 1 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................GTTCTAGAGTCCGACGATC........................................................................................................................................................................................................................................................................................................................................... 19 3 7 0.29 2 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................................................................................AGTAGGGCAGCAACGAGAAA..... 20 3 7 0.29 2 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0
...........................AGTCCGACGATCACGAGG..................................................................................................................................................................................................................................................................................................................................... 18 2 7 0.29 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................AGTACGACGATCTCGA....................................................................................................................................................................................................................................................................................................................................... 16 1 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................AGTCCGACGATCCCGAAG..................................................................................................................................................................................................................................................................................................................................... 18 2 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................AGTCCGACGATCCCGACGAT................................................................................................................................................................................................................................................................................................................................... 20 2 4 0.25 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................TAGGGTGGGGTTGGTCTAC................................................................................................................................................................................................................................................................................................... 19 3 9 0.22 2 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1
.......................................................................................................................................................................................TGTAAGGGTTAGACTTCGG........................................................................................................................................................................ 19 3 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
................................................................................................................................................................................................................................................................................................................................................TGGGTCGGAAGCGGGGCACC.............. 20 3 6 0.17 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
..................................................................................................................................................................................................................GATAGAATCTCCCTCGAGCT............................................................................................................................................ 20 3 6 0.17 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
..........................CAGTCCGACGATCCCGA....................................................................................................................................................................................................................................................................................................................................... 17 2 19 0.16 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................................................................GGGTCGGAAGCGGGGCACC.............. 19 3 15 0.13 2 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0
...........................AGTCCGACGATCCCGAA...................................................................................................................................................................................................................................................................................................................................... 17 2 16 0.13 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................GTCCGACGATCGCGAGG..................................................................................................................................................................................................................................................................................................................................... 17 2 9 0.11 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..........................CAGTCCGACGATCCAGAGGA.................................................................................................................................................................................................................................................................................................................................... 20 3 14 0.07 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
...........................AGTCCGACGATCTCGAG...................................................................................................................................................................................................................................................................................................................................... 17 2 14 0.07 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................GTCCGACGATCCCGAGA..................................................................................................................................................................................................................................................................................................................................... 17 2 15 0.07 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................TTCTTCAGTACGACGAT............................................................................................................................................................................................................................................................................................................................................ 17 2 16 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
......................................ACCGAGGATCCGGTAAA........................................................................................................................................................................................................................................................................................................................... 17 2 18 0.06 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0
...................CGTTCTTCAGTCCGACGAT............................................................................................................................................................................................................................................................................................................................................ 19 3 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
............................GTCCGACGATCCCTAGGC.................................................................................................................................................................................................................................................................................................................................... 18 3 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
...........................AGTCCGACGATCTCGAGCA.................................................................................................................................................................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
...........................AGTCCGACGATCCCGGAG..................................................................................................................................................................................................................................................................................................................................... 18 3 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0

Anti-sense strand reads

TCTAGCCACTGGAATAAGCGCAATAACTCATGCTGCTAGGGCTCCTAGTCCATTTCACCAAACCCAACCCAACCATATGGGAAACGTTTACTACATTAATATATTGAAGTTTGATGAAAGTTACAATTACCTTATATAGTAAGGGAATTAAAATCATTTGATTTGAACAATCTATGATAGTAAACGTTCCCATACTGAAGCCTTAGGCCTCTATGTGTGAGGGAGCTCGAAACGTGCGCGATCAAAGGGGGAGGCGCGGTTTACGTCTAGAGGCGTGAAGGACAGATATAACTTAAGTCAAGAAATAACGGTTGAATGTCCTCCTCCCGACCGACTACCCAGTCTTCCTCCCGTGGTTGCTCTTCCCTGA
**************************************************................(((((((((((((((((.((((((((((((.(((.((((........((((......(((((.(((((.....))))).)))))...))))........))))))).))).)))))))))))))))).(((...((((..(((((((.....(((....)))..(((((.((((..............))))....))))))))))))...)))).))).(((..((((...))))..)))))))))))))...************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR902009
testis
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
..................................................................................................................................................................TTGTACAAGCTATGATAG.............................................................................................................................................................................................. 18 2 2 0.50 1 1 0 0 0 0
............................................................................................................................................................................................................................................................................AGAGGCCTGAAGGACTG..................................................................................... 17 2 9 0.33 3 0 2 0 1 0
............................................................................................................................................................................................................................................................................................................AGGAATAACGCTTGCATGTC.................................................. 20 3 6 0.17 1 1 0 0 0 0
.............................................................................................................................................................................................................................................................................GAAGCGGGAAGGACAGACAT................................................................................. 20 3 7 0.14 1 0 0 1 0 0
............................................................................ATGGGCAACGTTTACCA..................................................................................................................................................................................................................................................................................... 17 2 11 0.09 1 0 0 0 0 1
..................................................................................................GTATATTGAAGTTTG................................................................................................................................................................................................................................................................. 15 1 15 0.07 1 0 1 0 0 0
.................................................................................................................................................................ATTGTACAAGCTATGATAG.............................................................................................................................................................................................. 19 3 20 0.05 1 0 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2r:9206838-9207207 + dsi_15952 AGATCGGTGACCTTATTCGCGTTATTGAGTACGACGATCCCGAGGATCAG-GTAAAGTGGTTTG-GGT------------------------------------TGGGTTGG-----------------TATACC-CTTTGCAAATGATGTA-------------------------------------------------------------ATTATATAACTTCAAACTACTTTCAATGTTAATGGAATA-----------------TATCAT-----------------TCCCTTA--------------A-----------TTTTAGTAAACTAAACTTGTTAGATACTATCATTTGCAAGGGTAT---------GACTTCGGA---ATCCGGAGATACACA--CT-CCCTC--GAGCTT-TGCACG-CGCTAGTTTCCC-C-CTCCGCGCCAA-ATG----CAGAT-CTCCGCACTTCCTGTCTATATTGAATTCAGTTCTTTATTGCCAACTTACAGGAGGAGGGCTGGCTGATGGGTCAGAAGGAGGGCACCAACGAGAAGGGACT
droSec2 scaffold_1:6044263-6044632 + AGATCGGTGACCTTATTCGCGTTATTGAGTACGACGATCCCGAGGATCAG-GTAAAGTGGTTTG-GGT------------------------------------TGGGTTGG-----------------TATACC-CTTTGCAAATGATGTA-------------------------------------------------------------TATATATAACTTCAAACTACTTTCAATGTTAATGGAATT-----------------TATTAT-----------------TCCCTCA--------------A-----------TTTTAGTAACCTAAACTTGTTAGACACTATCATTTGCAAGGGTAT---------GACTTCGGA---ATCCGGAGATACACA--CT-CCCTC--GAGCTT-TGCACG-CGCTAGTTTCCC-C-CTCCGCGCCAA-ATG----CAGAT-CTCCGCACTTCCTGTCTATATTGAGTTCAGTTTTTTATTGCCAACTTACAGGAGGAGGGCTGGCTGATGGGTCAGAAGGAGGGCACCAACGAGAAGGGACT
dm3 chr2R:8498177-8498563 + AGATTGGTGACCTTATTCGCGTTATTGAGTACGACGATCCCGAGGATCAG-GTAAAGTTGCTTG-AGT------------------------------------TGGGTTGG-----------------CTTACC-CTTTGCAGATGATGTA-------------------------------------------------------------ATTATATAACTTCAAGCTACTTTCAATGTTAATGGGATTGTCTGTCCTCATTTCCATAAAAT-----------------TCCATCA--------------A-----------TTTAAGTAAGCTAAACTTGTTAGATTCTATCATTTGCAAGGGTAT---------AACTTCGGA---ATCCGGAGATACACA--TT-CCTTT--GAGCTT-TGCACG-CGCTAGTTTCCC-C-CTCCGCGCCAA-ATG----CAGAT-CTCAGCACTTCCTGTCTATATTGAGTTCAGTTCTTTATTGCCAATTTACAGGAGGAAGGCTGGCTGATGGGTCAGAAGGAGGGCACCAACGAGAAGGGACT
droEre2 scaffold_4845:17300697-17301041 - AGATCGGTGACCTTATTCGCGTTATTGAGTACGACGATCCCGAGGATCAG-GTAAAGTCTTCTG-ACC------------------------------------AAAACTATT------------------TGCC-C-TTGCAGATT----------------------------------------------------------------------------------------------------------------------------------TATTTAATAGTAATG-----CAGTTTATTTAAGCATATTTTGATTGCTATTAAGCAAACTAAGC--------TACCATTATTTGCAAGGGCAT---------AACTTCGGA---ATCCGAAGGTACACA--TA-TCCTC--GAGCTT-TGCACG-CGCTAGTTCCCC-C-CTCCGCGCCAA-ATG----CAGAT-CTCCGCACTTCCTGTCTATATTGAGTTCAGTTTTTTATTGCCAACTTACAGGAGGAGGGCTGGCTGATGGGACAGAAAGAGGGCACCAACGAGAAGGGACT
droYak3 2R:8445603-8445948 - AGATCGGGGACCTAATTCGCGTTATTGAGTACGACGATCCCGAGGATCAG-GTAAAGTCGTTTT--GT------------------------------------TGGGTTGC-----------------CTTACC-C-TTGCAGATGATGTGCAATAGT------------------------------------------GA----------A--------------------------------------GTCTGTCTTGATTTCCATAC--TTTTA---------------------------TAAGCATATT-----------TAGGTAAACCA------------ACTATCATATGCAAGGGTAT---------AACTTCGGT---ATCCGGAGATACACA--TA-TCCTC--GAGCTT-TGCACG-CGCTAGTTTCCC-C-CTCCGCGCCAA-ATG----CAGAT-CTCCGCACTTCCTGTCTATATTGAGTTCAGTTCTTTATTGCCAACTTACAGGAGGAGGGCTGGCTGATGGGTCAGAAGGAGGGCACCAACGAGAAGGGACT
droEug1 scf7180000409672:4131586-4131963 - AGATCGGTGACCTTATTCGCGTTATTGAGTACGACGATCCCGAGGATCAG-GTAAAGTCGATTG-CGT------------------------------------AAAACTGTTAC------ACAGCCTTCTTATTCC-TTGCAGATTGTGTTT--TAATCATAACTTACTATCTGACTAAGCTTAAAAAGCTGACAAAGCTTAAAATGTTTCTA---------------------------------------------------AAAATAA--TATAA---------------------------CA-----------------------------------------------TATCTGCAAGGGAATA---TCCCGAACTTCGGC---ATCCGAAGATAAACT--CT-TCCTT--GAGCTT-TGCACG-CGCTAGTTTCCC-C-CTCCGCGCCAA-ATG----CAGAT-CTCCGCACTTCCTGTCTATATTGAGTGCAGTTCTTTATTGCCAATTTGCAGGAGGAGGGCTGGCTAATGGGTCAAAAGGAGGGCACCACCGAAAAGGGACT
droBia1 scf7180000302291:1538716-1538889 - ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTCGGT---ACCCGAAGATAAACT--CT-TCCTC--GAGCTT-TGCACG-CGCTAGATTCCC-C-CTCCGCGCCAA-ATG----CAGAC-CCCCGCACTTCCTGTCTATATTGAGTGCAGTTCTTTATTGCCAACTTGCAGGAGGAGGGCTGGCTGATGGGTCAGAAGGAGGGCACCACCGAGAAGGGGCT
droTak1 scf7180000415762:657264-657473 - TT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATAT--TATTA---------------------------TA-----------------------------------------------AATCTGCTCGGGTAT-----CACGTTCTTTGGA---ATCCGAAGACAAACT--CT-TCCTT--GAGCTT-TGCACG-CGCTAGTTTCCC-C-CTCCGCGCCAA-ATG----CAGAC-CTCCGCACTTCCTGTCTATATTGAGTTCAGTTCTTCATTGCCAACTTGCAGGAGGAGGGCTGGCTGATGGGTCAGAAGGAGGGCACCACCGAGAAGGGACT
droEle1 scf7180000491201:315036-315230 + T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACATATGCAAAGGTTTT---TC-CCAATTTCGGG---TTACGAAATT----T--CC-TCCTT--GAGCTT-TGCACG-CGCTAGTTTCCC-C-CTCCGCGCCAA-ACG----CAGAT-CCGCGCACTTCCTGTCTATATTGAGTTCAGTTCTTCATTGCCAACTTGCAGGAGGAGGGCTGGCTGATGGGTCAGAAGGAGGGCACCACCGAGAAGGGACT
droRho1 scf7180000767788:19189-19385 + -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATATGCAAGGGTTTT---TCCCCAACTTTGGA---ATCCGAAGTTTATAT--CT-TCCTC--GAGCTT-TGCACG-CGCTAGTTTCCC-C-CTCCGCGCCAA-ATG----CAGAC-CTCCGCACTTCCTGTCTATATTGAGTGCAGTTCTTCATTGCCAACTTGCAGGAGGAGGGCTGGCTGATGGGTCAGAAGGAGGGCACCACCGAGAAGGGACT
droFic1 scf7180000454066:793737-793934 - ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATAATCTGCAAGGATAT-----CTTTAACTTCGGA---TTTCGAAGCTTAACA--AT-TCCTT--GAGCTT-TGCACG-CGCTAGTTTCCC-C-CTCCGCGCCAA-ATG----CAGAT-CTCGGCACTTCCTGTCTTTATTGAGTGCAGTTCTTCATTGCCAACTTGCAGGAGGAGGGCTGGCTGATGGGTCAGAAGGAGGGCACCAACGAGAAAGGACT
droKik1 scf7180000302476:1253270-1253506 + TT-TTGGAAAAGTAAATCAAGTACTATAGCAAACCTTTCAAAAGCATCATCATCAAG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTTCGGAAACATCCGAAGTTCAAAG--AT-TCCTCTTAAGCTT-TGCACG-CGCTAGTTTCCC-C-CTCCGCGCCGA-ATT----CAGACACCCGGCACTTCCTGTCTTTATTGAGTGCAGTTCTTCATTACCCACTTGCAGGAGGAGGGCTGGCTGATGGGTCAGAAGGAGGGCACCACCGAGAAGGGCCT
droAna3 scaffold_13266:13096673-13096972 + AGATCGGTGACATAATTCGGGTTATCGAGTACGACGATCCAGAGGATCAG-GTAAAGTTGATAG-GTTTAGACT------------TGGTACTATATTCTGGTG--GACT----------G---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATAGCCTTCTAGGATATAGCTTC--CCACTTCGGC--TATCCGAAGATATATATCCT-TCCTT--GAGCTT-TGCACG-CGCTAGTCTCCC-C-CACCGCGCCACAATG----CAGAC-CTCTGCACTTCCTTTCTTTATTGAGAGCAGTTCTTTGTTACCAACTTGCAGGAGGAGGGCTGGCTGATGGGTCAGAAGGAGGGCACCACCGAGAAGGGACT
droBip1 scf7180000396730:832940-833255 - AGATCGGTGACATAATTCGCGTTATCGAGTACGACGATCCAGAGGATCAG-GTAAAGTCAT-AGGGTTTAGACCCTTTAGAGTCTATGGTACTATATTCTGGCC--GACT----TGAGCTG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATAGTCTGCCAGGATTTAGCTTT-GTAACTTCGGA---TATCGAAGATATATC--CT-TCCTT--GAGCTT-TGCACG-CGCTAGTCTCCC-C-CTCCGCGCCAAAATG----CAGAC-CTCGGCACTTCCTTTCTTTATTGAGAGCAGTTCTTTGTTGCCAATTTGCAGGAGGAGGGCTGGCTGATGGGTCAGAAGGAGGGCACCACCGAGAAGGGACT
dp5 3:12412562-12412693 - -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTAGTTTCCC-C-CTCCCCGCTTG-TGG----CAGAT-GGACACACTTCTTGTCTTTATTGAGTGCAGTTTTTCCTTACCAATTTACAGGAGGAAGGCTGGCTAATGGGTCAGAAGGAGGGCACCAGCGAGAAGGGCCT
droPer2 scaffold_44:594761-594894 - -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTAGTTTCCCCC-CTCCCCGCTTG-GTG-G--CAGAT-GGACACACTTCTTGTCTTTATTGAGTGCAGTTTTTCCTTACCAATTTACAGGAGGAGGGCTGGCTAATGGGTCAGAAGGAGGGCACCAGCGAGAAGGGCCT
droWil2 scf2_1100000004954:2138910-2139001 + -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTTGTCTCTATTGTATCTAGTTTTTTATTGCTAATTTGCAGGAGGAAGGATGGTTAATGGGGCAAAAGGAAGGCACTCAGGAGAAAGGCTT
droVir3 scaffold_12875:18107404-18107545 + -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCATGCCGCTAGTCAACC-C-TCCCGAGTTAA-ATGTGTATAGAA-TTT--CACTACTTGTCTTTATTGAATGTAGTTTTTTATTAACAATTTACAGGAGGAAGGCTGGCTAATGGGTCAAAAGGAGGGCACAAACGAGAAGGGCCT
droMoj3 scaffold_6496:11730775-11731034 + AGATTGGTGACATCATACGCGTCATCGAGTACGATGATCCCGAGGATCAG-GTAAAACCATTTT-CGT------------------------------------TG-----CCAC-----------------AC---GCTGAAATTGTTGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAT---------------GAC---TT---AAGAGAATCC--CTGTTTGT--GAGTTAAAGCATG-CGCTAGTTGCC--C-CTCCGAGTGTT-ATG-ATCGAGAA-TTT--CATTACTTGTTTTTATTGAATGCAGTTTTTTATTACCAATTTACAGGAGGAGGGCTGGCTAATGGGTCAAAAGGAAGGCACAAACGAGAAGGGCCT
droGri2 scaffold_15245:4234417-4234555 + ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCATG-CGCTAGTTGCCC-CTCTAAGTGCTAT-GTG----ATAAG-AATTTCACTACATGTTTGTATTGAATGCAGTTTTTTATTAACAATTTACAGGAGGAGGGATGGCTAATGGGTCAAAAGGAGGGCACAACCGAGAAGGGACT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
AGATCGGTGACCTTATTCGCGTTATTGAGTACGACGATCCCGAGGATCAG-GTAAAGTGGTTTG-GGT------------------------------------TGGGTTGG-----------------TATACC-CTTTGCAAATGATGTA-------------------------------------------------------------ATTATATAACTTCAAACTACTTTCAATGTTAATGGAATA-----------------TATCAT-----------------TCCCTTA--------------A-----------TTTTAGTAAACTAAACTTGTTAGATACTATCATTTGCAAGGGTAT---------GACTTCGGA---ATCCGGAGATACACA--CT-CCCTC--GAGCTT-TGCACG-CGCTAGTTTCCC-C-CTCCGCGCCAA-ATG----CAGAT-CTCCGCACTTCCTGTCTATATTGAATTCAGTTCTTTATTGCCAACTTACAGGAGGAGGGCTGGCTGATGGGTCAGAAGGAGGGCACCAACGAGAAGGGACTSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGGAGGGCTGGCTGATGGG..............................2111.00100010000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGGCTGGCTGATGGGTCAGA.........................2111.00110000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTTATTGCCAACTTACAG..................................................2011.00100000100000000000
....................GTTATTGAGTACGACGATCCCGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100100000000000000
.......................ATTGAGTACGACGATCCCGAGGATCAG-GA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.00100000001000000000
droSec2
AGATCGGTGACCTTATTCGCGTTATTGAGTACGACGATCCCGAGGATCAG-GTAAAGTGGTTTG-GGT------------------------------------TGGGTTGG-----------------TATACC-CTTTGCAAATGATGTA-------------------------------------------------------------TATATATAACTTCAAACTACTTTCAATGTTAATGGAATT-----------------TATTAT-----------------TCCCTCA--------------A-----------TTTTAGTAACCTAAACTTGTTAGACACTATCATTTGCAAGGGTAT---------GACTTCGGA---ATCCGGAGATACACA--CT-CCCTC--GAGCTT-TGCACG-CGCTAGTTTCCC-C-CTCCGCGCCAA-ATG----CAGAT-CTCCGCACTTCCTGTCTATATTGAGTTCAGTTTTTTATTGCCAACTTACAGGAGGAGGGCTGGCTGATGGGTCAGAAGGAGGGCACCAACGAGAAGGGACTSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGAGGAGGGCTGGCTGATGG...............................2212.0020020
..ATCGGTGACCTTATTCGCGTTATTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0011000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGATGGGTCAGAAGGAGGG..................2111.0010001
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGAGGAGGGCTGGCTGATGGGTC............................2511.0010001
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATGGGTCAGAAGGAGGGCACC..............2311.0010100
......................TATTGAGTACGACGATCCCGAGGATC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010010
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGATGGGTCAGAAGGAGGGCACT..............2511.0011000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGAGGAGGGCTGGCTGATGGGT.............................2411.0010100
............................GTACGACGATCCCGAGGATCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010010
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGGAGGGCTGGCTGATGGGT.............................2211.0011000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGAGGAGGGCTGGCTGATGGGTCA...........................2611.0010100
dm3
AGATTGGTGACCTTATTCGCGTTATTGAGTACGACGATCCCGAGGATCAG-GTAAAGTTGCTTG-AGT------------------------------------TGGGTTGG-----------------CTTACC-CTTTGCAGATGATGTA-------------------------------------------------------------ATTATATAACTTCAAGCTACTTTCAATGTTAATGGGATTGTCTGTCCTCATTTCCATAAAAT-----------------TCCATCA--------------A-----------TTTAAGTAAGCTAAACTTGTTAGATTCTATCATTTGCAAGGGTAT---------AACTTCGGA---ATCCGGAGATACACA--TT-CCTTT--GAGCTT-TGCACG-CGCTAGTTTCCC-C-CTCCGCGCCAA-ATG----CAGAT-CTCAGCACTTCCTGTCTATATTGAGTTCAGTTCTTTATTGCCAATTTACAGGAGGAAGGCTGGCTGATGGGTCAGAAGGAGGGCACCAACGAGAAGGGACTSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.........................TGAGTACGACGATCCCGAGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2018.0080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000800000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...TTGGTGACCTTATTCGCGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1917.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGCTGATGGGTCAGAAGGA.....................2116.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000402000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGCTGATGGGTCAGAAGGA.....................2214.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000121000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGCTGATGGGTCAGAAGGAGGGCACCA.............2914.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGCTGATGGGTCAGAAG.......................2014.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000031000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................TATTGAGTACGACGATCCCGAGGATCAG-..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGCTGATGGGTCAGAAGGAGGG..................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................GCGTTATTGAGTACGACGATCCCGAGGAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGCTGATGGGTCAGAAGG......................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCAGTTCTTTATTGCCAATTTACAG..................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
.................CGCGTTATTGAGTACGACGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGGTCAGAAGGAGGGC.................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGGAAGGCTGGCTGATGGGTC............................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............TTCGCGTTATTGAGTACG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
......................TATTGAGTACGACGATCCCGAGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................ATTGAGTACGACGATCCCGAGGAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000
.............................TACGACGATCCCGAGGATCAG-GAGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTGATGGGTCAGAAGGAGGGCA................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................ATTGAGTACGACGATCCCGAGGATC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................CGCGTTATTGAGTACGAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGGTCAGAAGGAGGGCAC...............2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA-ATG----CAGAT-CTCAGCACTT...........................................................................................2011.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............TTATTCGCGTTATTGAGTACG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
.......................ATTGAGTACGACGATCCCGAGGATCAG-GA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
......GTGACCTTATTCGCGTTAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................TTGAGTACGACGATCCCGAGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTGGCTGATGGGTCAGAAGG......................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................TTGAGTACGACGATCCCGAGGATCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
..............................ACGACGATCCCGAGGATC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................GCGTTATTGAGTACGACG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................CCTTT--GAGCTT-TGCACG-CGCT.........................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCTGATGGGTCAGAAGGAGG...................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
..ATTGGTGACCTTATTCGCGTT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................TGAGTACGACGATCCCGAGGATCAG-G.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
..........................GAGTACGACGATCCCGAGGAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTGGCTGATGGGTCAGAAGGAGG...................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................TTATTGAGTACGACGATCCCGAGGATC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGATGGGTCAGAAGGAG....................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGTTCTTTATTGCCAATTTACAG..................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGAGGGCACCAACGA.........1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................TTGAGTACGACGATCCCGAGGATCAG-..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................TATTGAGTACGACGATCCCGAGGATCAG-G.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATATTGAGTTCAGTTCTTTAT...............................................................2211.0010000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................TACGACGATCCCGAGGATCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGTCAGAAGGAGGGCACCAACGAG........2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
.....................TTATTGAGTACGACGATCCCGAGGAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCTGATGGGTCAGAAG.......................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGGAAGGCTGGCTGATGG...............................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..ATTGGTGACCTTATTCGCGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................CGACGATCCCGAGGATCAG-GAGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2330.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
AGATCGGTGACCTTATTCGCGTTATTGAGTACGACGATCCCGAGGATCAG-GTAAAGTCTTCTG-ACC------------------------------------AAAACTATT------------------TGCC-C-TTGCAGATT----------------------------------------------------------------------------------------------------------------------------------TATTTAATAGTAATG-----CAGTTTATTTAAGCATATTTTGATTGCTATTAAGCAAACTAAGC--------TACCATTATTTGCAAGGGCAT---------AACTTCGGA---ATCCGAAGGTACACA--TA-TCCTC--GAGCTT-TGCACG-CGCTAGTTCCCC-C-CTCCGCGCCAA-ATG----CAGAT-CTCCGCACTTCCTGTCTATATTGAGTTCAGTTTTTTATTGCCAACTTACAGGAGGAGGGCTGGCTGATGGGACAGAAAGAGGGCACCAACGAGAAGGGACTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAGAAAGAGGGCACCAACGAGAA......2513.0030000300
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGGCTGGCTGATGGGACA...........................2011.0011000000
...TCGGTGACCTTATTCGCGTT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0011000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGAAAGAGGGCACCAACGAGAAG.....2511.0010000100
........GACCTTATTCGCGTTATTGAGTAC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000100
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAGGAGGGCTGGCTGA..................................1811.0010000100
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGCACCAACGAGAAGGGA..1911.0010000100
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCTGATGGGACAGAAAGA.....................2011.0011000000
........................TTGAGTACGACGATCCCGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000100
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACAGGAGGAGGGCTGGCT....................................1911.0011000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGGAGGGCTGGCTGATG................................1911.0011000000
droYak3
AGATCGGGGACCTAATTCGCGTTATTGAGTACGACGATCCCGAGGATCAG-GTAAAGTCGTTTT--GT------------------------------------TGGGTTGC-----------------CTTACC-C-TTGCAGATGATGTGCAATAGT------------------------------------------GA----------A--------------------------------------GTCTGTCTTGATTTCCATAC--TTTTA---------------------------TAAGCATATT-----------TAGGTAAACCA------------ACTATCATATGCAAGGGTAT---------AACTTCGGT---ATCCGGAGATACACA--TA-TCCTC--GAGCTT-TGCACG-CGCTAGTTTCCC-C-CTCCGCGCCAA-ATG----CAGAT-CTCCGCACTTCCTGTCTATATTGAGTTCAGTTCTTTATTGCCAACTTACAGGAGGAGGGCTGGCTGATGGGTCAGAAGGAGGGCACCAACGAGAAGGGACTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTTATTGCCAACTTACAG..................................................2011.00101000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGAGGAGGGCTGGCTGATG................................2111.00100000010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAGGAGGGCTGGCTGATGGGTC............................2411.00100100000000
..............................ACGACGATCCCGAGGATCAG-GAGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2430.33100100000000
droEug1
AGATCGGTGACCTTATTCGCGTTATTGAGTACGACGATCCCGAGGATCAG-GTAAAGTCGATTG-CGT------------------------------------AAAACTGTTAC------ACAGCCTTCTTATTCC-TTGCAGATTGTGTTT--TAATCATAACTTACTATCTGACTAAGCTTAAAAAGCTGACAAAGCTTAAAATGTTTCTA---------------------------------------------------AAAATAA--TATAA---------------------------CA-----------------------------------------------TATCTGCAAGGGAATA---TCCCGAACTTCGGC---ATCCGAAGATAAACT--CT-TCCTT--GAGCTT-TGCACG-CGCTAGTTTCCC-C-CTCCGCGCCAA-ATG----CAGAT-CTCCGCACTTCCTGTCTATATTGAGTGCAGTTCTTTATTGCCAATTTGCAGGAGGAGGGCTGGCTAATGGGTCAAAAGGAGGGCACCACCGAAAAGGGACTSizeHit CountTotal NormTotal
No Reads
droBia1
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTCGGT---ACCCGAAGATAAACT--CT-TCCTC--GAGCTT-TGCACG-CGCTAGATTCCC-C-CTCCGCGCCAA-ATG----CAGAC-CCCCGCACTTCCTGTCTATATTGAGTGCAGTTCTTTATTGCCAACTTGCAGGAGGAGGGCTGGCTGATGGGTCAGAAGGAGGGCACCACCGAGAAGGGGCTSizeHit CountTotal NormTotal
No Reads
droTak1
TT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATAT--TATTA---------------------------TA-----------------------------------------------AATCTGCTCGGGTAT-----CACGTTCTTTGGA---ATCCGAAGACAAACT--CT-TCCTT--GAGCTT-TGCACG-CGCTAGTTTCCC-C-CTCCGCGCCAA-ATG----CAGAC-CTCCGCACTTCCTGTCTATATTGAGTTCAGTTCTTCATTGCCAACTTGCAGGAGGAGGGCTGGCTGATGGGTCAGAAGGAGGGCACCACCGAGAAGGGACTSizeHit CountTotal NormTotal
No Reads
droEle1
T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACATATGCAAAGGTTTT---TC-CCAATTTCGGG---TTACGAAATT----T--CC-TCCTT--GAGCTT-TGCACG-CGCTAGTTTCCC-C-CTCCGCGCCAA-ACG----CAGAT-CCGCGCACTTCCTGTCTATATTGAGTTCAGTTCTTCATTGCCAACTTGCAGGAGGAGGGCTGGCTGATGGGTCAGAAGGAGGGCACCACCGAGAAGGGACTSizeHit CountTotal NormTotal
No Reads
droRho1
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATATGCAAGGGTTTT---TCCCCAACTTTGGA---ATCCGAAGTTTATAT--CT-TCCTC--GAGCTT-TGCACG-CGCTAGTTTCCC-C-CTCCGCGCCAA-ATG----CAGAC-CTCCGCACTTCCTGTCTATATTGAGTGCAGTTCTTCATTGCCAACTTGCAGGAGGAGGGCTGGCTGATGGGTCAGAAGGAGGGCACCACCGAGAAGGGACTSizeHit CountTotal NormTotal
No Reads
droFic1
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATAATCTGCAAGGATAT-----CTTTAACTTCGGA---TTTCGAAGCTTAACA--AT-TCCTT--GAGCTT-TGCACG-CGCTAGTTTCCC-C-CTCCGCGCCAA-ATG----CAGAT-CTCGGCACTTCCTGTCTTTATTGAGTGCAGTTCTTCATTGCCAACTTGCAGGAGGAGGGCTGGCTGATGGGTCAGAAGGAGGGCACCAACGAGAAAGGACTSizeHit CountTotal NormTotal
No Reads
droKik1
TT-TTGGAAAAGTAAATCAAGTACTATAGCAAACCTTTCAAAAGCATCATCATCAAG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTTCGGAAACATCCGAAGTTCAAAG--AT-TCCTCTTAAGCTT-TGCACG-CGCTAGTTTCCC-C-CTCCGCGCCGA-ATT----CAGACACCCGGCACTTCCTGTCTTTATTGAGTGCAGTTCTTCATTACCCACTTGCAGGAGGAGGGCTGGCTGATGGGTCAGAAGGAGGGCACCACCGAGAAGGGCCTSizeHit CountTotal NormTotal
No Reads
droAna3
AGATCGGTGACATAATTCGGGTTATCGAGTACGACGATCCAGAGGATCAG-GTAAAGTTGATAG-GTTTAGACT------------TGGTACTATATTCTGGTG--GACT----------G---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATAGCCTTCTAGGATATAGCTTC--CCACTTCGGC--TATCCGAAGATATATATCCT-TCCTT--GAGCTT-TGCACG-CGCTAGTCTCCC-C-CACCGCGCCACAATG----CAGAC-CTCTGCACTTCCTTTCTTTATTGAGAGCAGTTCTTTGTTACCAACTTGCAGGAGGAGGGCTGGCTGATGGGTCAGAAGGAGGGCACCACCGAGAAGGGACTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGGCTGGCTGATGGGTCAGAAG.......................2412.002100010
...........ATAATTCGGGTTATCGAGTACGACG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001010000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGGAGGGCTGGCTGATGGG..............................2111.001100000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAC-CTCTGCACTTCCTTT......................................................................................1911.001010000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGAGGAGGGCTGGCTGATGG...............................2211.001010000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGCTGGCTGATGGGTCAGAA........................2111.001100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAGGAGGGCTGGCTGATGGGTCA...........................2511.001000010
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGGAGGGCTGGCTGATGGGTC............................2311.001100000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTGGCTGATGGGTCAGAAGGAGG...................2511.001100000
..ATCGGTGACATAATTCGGGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001010000
......................................................................GACT------------TGGTACTATATTCTGGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTGGCTGATGGGTCAGA.........................1911.001100000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGCTGATGGGTCAGAAGGAG....................2311.001000010
....CGGTGACATAATTCGGGTTATCGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000010
.................CGGGTTATCGAGTACGACG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGGTCAGAAGGAGGGCACCACC...........2511.001000001
..............................................................................................................................................................................................................................................................................................................................................................................................................................TT--GAGCTT-TGCACG-CGCTAGT......................................................................................................................................2111.001000010
.....................TTATCGAGTACGACGATCCAGAGGAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000001
droBip1
AGATCGGTGACATAATTCGCGTTATCGAGTACGACGATCCAGAGGATCAG-GTAAAGTCAT-AGGGTTTAGACCCTTTAGAGTCTATGGTACTATATTCTGGCC--GACT----TGAGCTG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATAGTCTGCCAGGATTTAGCTTT-GTAACTTCGGA---TATCGAAGATATATC--CT-TCCTT--GAGCTT-TGCACG-CGCTAGTCTCCC-C-CTCCGCGCCAAAATG----CAGAC-CTCGGCACTTCCTTTCTTTATTGAGAGCAGTTCTTTGTTGCCAATTTGCAGGAGGAGGGCTGGCTGATGGGTCAGAAGGAGGGCACCACCGAGAAGGGACTSizeHit CountTotal NormTotal
No Reads
dp5
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTAGTTTCCC-C-CTCCCCGCTTG-TGG----CAGAT-GGACACACTTCTTGTCTTTATTGAGTGCAGTTTTTCCTTACCAATTTACAGGAGGAAGGCTGGCTAATGGGTCAGAAGGAGGGCACCAGCGAGAAGGGCCTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATGGGTCAGAAGGAGG...................1811.0010100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTAATGGGTCAGAAGGAGGG..................2211.0010100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCAGAAGGAGGGCACC..............1811.0010001000000
droPer2
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTAGTTTCCCCC-CTCCCCGCTTG-GTG-G--CAGAT-GGACACACTTCTTGTCTTTATTGAGTGCAGTTTTTCCTTACCAATTTACAGGAGGAGGGCTGGCTAATGGGTCAGAAGGAGGGCACCAGCGAGAAGGGCCTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGGCTGGCTAATGGGTC............................1911.001000001
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGTCAGAAGGAGGGCACCA.............2211.001010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAGGAGGGCTGGCTAATG................................2011.001010000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTAATGGGTCAGAAGGAGGG..................2211.001000001
droWil2
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTTGTCTCTATTGTATCTAGTTTTTTATTGCTAATTTGCAGGAGGAAGGATGGTTAATGGGGCAAAAGGAAGGCACTCAGGAGAAAGGCTTSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATGGGGCAAAAGGAAGG..................1911.00100100
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGATGGTTAATGGGGCAAAAGGA.....................2411.00100100
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGGGCAAAAGGAAGGC.................1911.00100010
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGTTAATGGGGCAAAAGGAAGG..................2411.00100100
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAAAGGAAGGCACTCAGGA.........2111.00100010
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGGAAGGATGGTTAATGGGGCA...........................2411.00100100
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAATGGGGCAAAAGGAAG...................2011.00100100
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGGAAGGCACTCAGGAGA.......2011.00100100
droVir3
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCATGCCGCTAGTCAACC-C-TCCCGAGTTAA-ATGTGTATAGAA-TTT--CACTACTTGTCTTTATTGAATGTAGTTTTTTATTAACAATTTACAGGAGGAAGGCTGGCTAATGGGTCAAAAGGAGGGCACAAACGAGAAGGGCCTSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-ATGTGTATAGAA-TTT--CACC............................................................................................2011.001000100000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGGAGGGCACAAACGAG........1911.001001000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGGCACAAACGAGAAGGGCCT2211.001000000000000000000010000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGAGGAAGGCTGGCTAATG................................2111.001000000000000000000000000000000000000000000000000000000000001000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGAGGAAGGCTGGCTAATGGGTC............................2511.001000000000000000000000000000000000000000000000000000000000000010
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCTAATGGGTCAAAAGGA.....................2011.001001000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGTCAAAAGGAGGGCA................1911.001001000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACAAACGAGAAGGGCCT1811.001000000000000000001000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGTCAAAAGGAGGGCACAAACG..........2411.001000000000000000000000010000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGGGTCAAAAGGAGGGCA................2011.001001000000000000000000000000000000000000000000000000000000000000
droMoj3
AGATTGGTGACATCATACGCGTCATCGAGTACGATGATCCCGAGGATCAG-GTAAAACCATTTT-CGT------------------------------------TG-----CCAC-----------------AC---GCTGAAATTGTTGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAT---------------GAC---TT---AAGAGAATCC--CTGTTTGT--GAGTTAAAGCATG-CGCTAGTTGCC--C-CTCCGAGTGTT-ATG-ATCGAGAA-TTT--CATTACTTGTTTTTATTGAATGCAGTTTTTTATTACCAATTTACAGGAGGAGGGCTGGCTAATGGGTCAAAAGGAAGGCACAAACGAGAAGGGCCTSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGGAGGGCTGGCTAATGGGTC............................2311.001000001
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAGGAGGGCTGGCTAATG................................2011.001100000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGGAAGGCACAAACGAGAAGG....2311.001100000
........GACATCATACGCGTCATCGAGTACGATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001100000
...............TACGCGTCATCGAGTACGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGTCAAAAGGAAGGCACAAAC...........2211.001000001
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAATGGGTCAAAAGGAAGGC.................2211.001000001
droGri2
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCATG-CGCTAGTTGCCC-CTCTAAGTGCTAT-GTG----ATAAG-AATTTCACTACATGTTTGTATTGAATGCAGTTTTTTATTAACAATTTACAGGAGGAGGGATGGCTAATGGGTCAAAAGGAGGGCACAACCGAGAAGGGACTSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGTCAAAAGGAGGGCACA..............2111.00101

Generated: 05/18/2015 at 10:13 AM