ID:

dsi_15942

 Coordinate:

2l:20983300-20983449 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-6.8 -6.47 -6.3

Flybase annnotation

intergenic

Repeatable elements

NameClassFamilyStrand
DNAREP1_DYakRCHelitron+
mature
  1. dsi_15942  2l:20983304-20983327 +
  2. dsi_30824  2l:21752397-21752420 +
  3. dsi_20541  2l:23032819-23032842 +
  4. dsi_24539  2r:1803272-1803295 +
  5. 2r:2489097-2489120 +
  6. node_52186:616-639 +
  7. node_30091:205-228 +
  8. node_25617:47-70 -
star
  1. dsi_15942  2l:20983372-20983396 +
  2. dsi_30824  2l:21752465-21752489 +
  3. dsi_20541  2l:23032887-23032911 +
  4. dsi_24539  2r:1803340-1803364 +

Sense Strand Reads

CAGCCAGGTGGAAGCGTTTCCGACCGAATAAAGATTATTTATTCTTGATTAGGATCAATAGCCGAGTCGATCAAGCCATGTCCGTCTGTCCAAACCATTTATTTACCCCACCCTATCGTTGTTGACTGTTTTTGACCACTATTCATTTATTTTCTGTGCAGCTAGTTCGCCAATTGTACTTAACGTCTTTAAATTCTCAGGTGGATAGCAGACGATTGGAGCACTTGCAGCCGCCTTTGTGGTCACGGCT
******************************************************((((.(((..((((((.(((............................................)))))))))))).))))............******************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 SRR902008
ovaries
 O001
Testis
 O002
Head
 SRR902009
testis
 M053
female body
 M024
male body		 GSM343915
embryo
 M023
head
......................................................TCAATAGCCGAGTCGATCAAGCCA............................................................................................................................................................................ 24 0 8 8.63 69 35 25 5 2 0 2 0 0 0 0 0 0 0
..........................................................................................................................TGACTGTTTTTGACCACTATTCATT....................................................................................................... 25 0 4 2.00 8 0 3 0 2 3 0 0 0 0 0 0 0 0
.................................................TAGGATCAATAGCCGAGTCGATC.................................................................................................................................................................................. 23 0 12 1.33 16 4 8 1 0 3 0 0 0 0 0 0 0 0
.......................................................CAATAGCCGAGTCGATCAA................................................................................................................................................................................ 19 0 10 1.00 10 0 0 0 0 0 0 9 0 0 0 0 1 0
...........................................................................................................................................................................................TTTAAATTCTCAGGTGGATAGCAGA...................................... 25 0 4 1.00 4 1 1 0 0 2 0 0 0 0 0 0 0 0
.................................................TAGGATCAATAGCCGAGTC...................................................................................................................................................................................... 19 0 15 0.93 14 0 0 0 0 0 0 0 14 0 0 0 0 0
.................................................TAGGATCAATAGCCGAGTCGATCAAG............................................................................................................................................................................... 26 0 5 0.80 4 0 3 0 0 1 0 0 0 0 0 0 0 0
.................................................TAGGATCAATAGCCGAGTCGATCAAGC.............................................................................................................................................................................. 27 0 5 0.80 4 1 1 0 0 2 0 0 0 0 0 0 0 0
...............................................................................................................................................................AGCTAGTTCGCCAATTGTACTTAACGTC............................................................... 28 0 4 0.75 3 0 0 0 1 2 0 0 0 0 0 0 0 0
.......................................................CAATAGCCGAGTCGATCAAGCCATG.......................................................................................................................................................................... 25 0 8 0.75 6 0 1 5 0 0 0 0 0 0 0 0 0 0
.....................................................ATCAATAGCCGAGTCGATCAAGCCA............................................................................................................................................................................ 25 0 8 0.75 6 2 4 0 0 0 0 0 0 0 0 0 0 0
.......................................................CAATAGCCGAGTCGATCAAGCCAT........................................................................................................................................................................... 24 0 9 0.67 6 0 0 3 0 1 1 0 0 0 1 0 0 0
...........................................................AGCCGAGTCGATCAAGCCATG.......................................................................................................................................................................... 21 0 8 0.63 5 0 0 5 0 0 0 0 0 0 0 0 0 0
.................................................TAGGATCAATAGCCGAGTCGAT................................................................................................................................................................................... 22 0 13 0.62 8 0 3 0 1 4 0 0 0 0 0 0 0 0
.......................................................CAATAGCCGAGTCGATCAAGCCA............................................................................................................................................................................ 23 0 9 0.56 5 1 0 1 1 1 0 0 0 0 1 0 0 0
....................................................................GATCAAGCCATGACCGTCTGTCCAA............................................................................................................................................................. 25 1 4 0.50 2 0 0 0 0 0 0 0 0 2 0 0 0 0
.............................................................CCGAGTCGATCAAGCCATGT......................................................................................................................................................................... 20 0 6 0.50 3 0 0 0 0 0 0 3 0 0 0 0 0 0
...................................................................................................................TCGATGTTAACTTTTTTTGACCAC............................................................................................................... 24 3 4 0.50 2 0 0 0 2 0 0 0 0 0 0 0 0 0
...............................................................................................................CCTATCGTTGTTGACTGTTTTTGACCA................................................................................................................ 27 0 4 0.50 2 1 1 0 0 0 0 0 0 0 0 0 0 0
.................................................TAGGATCAATAGCCGAGTCGATCAA................................................................................................................................................................................ 25 0 5 0.40 2 1 1 0 0 0 0 0 0 0 0 0 0 0
...........................................................AGCCGAGTCGATCAAGCCATGTCCGTC.................................................................................................................................................................... 27 0 5 0.40 2 0 0 2 0 0 0 0 0 0 0 0 0 0
..........................................................TAGCCGAGTCGATCAAGCCATGTC........................................................................................................................................................................ 24 0 6 0.33 2 0 0 1 0 0 1 0 0 0 0 0 0 0
.......................................................CAATAGCCGAGTCGATCAAGCCATGT......................................................................................................................................................................... 26 0 6 0.33 2 0 0 0 0 0 0 0 0 2 0 0 0 0
...........................................................AGCCGAGTCGATCAAGCCATGTC........................................................................................................................................................................ 23 0 6 0.33 2 0 0 2 0 0 0 0 0 0 0 0 0 0
.................................................................GTCGATCAAGCCATGTCCGTC.................................................................................................................................................................... 21 0 7 0.29 2 0 0 2 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................TGTTGACTGTTTGGGACCACGA............................................................................................................. 22 3 4 0.25 1 0 0 0 0 1 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................TTGGAGCACTTGCAGCC.................. 17 0 4 0.25 1 0 0 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................TTATTTACCCCACCCTATCGTTGTT............................................................................................................................... 25 0 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................AGTTCGCCAATTGTACTTAACGTCT.............................................................. 25 0 4 0.25 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................GTTGTTAGCTGTCTTTGACC................................................................................................................. 20 3 12 0.25 3 0 0 0 0 0 0 0 0 0 0 2 0 1
.................................................................................................................................................................................................TTCTCAGGTGGATAG.......................................... 15 0 4 0.25 1 0 0 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................TTTGACCACTATTCATTTATTTTCTGT............................................................................................. 27 0 4 0.25 1 0 0 0 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................AGCAGACGATTGGAGCACTTGCAGC................... 25 0 4 0.25 1 0 0 0 0 0 1 0 0 0 0 0 0 0
..GCCAGGTGGAAGCGTT........................................................................................................................................................................................................................................ 16 0 4 0.25 1 0 0 1 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................TTAACGTCTTTAAATTCTCAGGTGGA............................................. 26 0 4 0.25 1 0 0 0 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................TAGTTCGCCAATTGTACTTAACGTCTT............................................................. 27 0 4 0.25 1 0 0 0 0 1 0 0 0 0 0 0 0 0
....................................................................................................................................................................................TAACGTCTTTAAATTCTCAGGTGGA............................................. 25 0 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................TGTCCAAACCATTTATTTACCCCACCC......................................................................................................................................... 27 0 4 0.25 1 0 0 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................................TATCCCACCCTATCGTTGTTGACTGTT........................................................................................................................ 27 1 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................TATTTTCTGTGCAGCTAGTTCGCCAA............................................................................. 26 0 4 0.25 1 0 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................TCTGTGCAGCTAGTTCGCCAATTGTACT...................................................................... 28 0 4 0.25 1 0 0 0 1 0 0 0 0 0 0 0 0 0
......................................................TCAATAGCCGAGTCGATCAAGCC............................................................................................................................................................................. 23 0 8 0.25 2 0 0 2 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................TAGCAGACGATTGGAGCACTTGCAGC................... 26 0 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................TAGCAGACGATTGGAGCACTTGC...................... 23 0 4 0.25 1 0 0 0 0 0 1 0 0 0 0 0 0 0
.................................................................................................................................................................................................................AGACGATTGGAGCACTTGCAGCCGCCTT............. 28 0 4 0.25 1 0 0 0 0 0 1 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................CTTGCAGCCGCCTTTGTGG........ 19 0 4 0.25 1 0 0 1 0 0 0 0 0 0 0 0 0 0
......................................................TCAATAGCCGAGTCGATC.................................................................................................................................................................................. 18 0 20 0.25 5 3 0 2 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................TAAATTCTCAGGTGGATAGCAGACGA................................... 26 0 4 0.25 1 0 0 0 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................TGTACTTAACGTCTTTAAATTCTCAGG................................................. 27 0 4 0.25 1 0 0 0 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................TCAGGTGGATAGCAGACGATTGGAGC............................ 26 0 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.........................................TTCTTGATTAGGATCAATAGCCGAGT....................................................................................................................................................................................... 26 0 8 0.25 2 0 0 0 2 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................TTTTCTGTGCAGCTAGTTCGCCAA............................................................................. 24 0 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................TTCTCAGGTGGATAGCAGACGATTGG............................... 26 0 4 0.25 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................TTCTCAGGTGGATAGCAGA...................................... 19 0 4 0.25 1 0 0 1 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................TACTTAACGTCTTTAAATTCTCAGGTGGA............................................. 29 0 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................TTTATTTTCTGTGCAGCTAGTTCGCCAAT............................................................................ 29 0 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.....................................TTTATTCTTGATTAGGATCAATAGCCGAGT....................................................................................................................................................................................... 30 0 4 0.25 1 0 1 0 0 0 0 0 0 0 0 0 0 0
......................................................TCAATAGCCGAGTCGATCAAGCCATG.......................................................................................................................................................................... 26 0 8 0.25 2 0 0 0 0 0 1 0 0 0 1 0 0 0
...................................................GGATCAATAGCCGAGTCGATCAAGCCA............................................................................................................................................................................ 27 0 8 0.25 2 0 2 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................CGATTGGAGCACTTGCAGCCGCCTT............. 25 0 4 0.25 1 0 0 0 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................GTCTTTAAATTCTCAGGTGGATAGCAGA...................................... 28 0 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................TACCCCACCCTATCGTTGTTGACTGTT........................................................................................................................ 27 0 4 0.25 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................TAGTTCGCCAATTGTACTTAACGTCT.............................................................. 26 0 4 0.25 1 0 0 0 0 1 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................TGGATAGCAGACGATTGGAGCACTTGCAGC................... 30 0 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................AGACGATTGGAGCACTTGCAGCCGCC............... 26 0 4 0.25 1 0 0 0 0 0 1 0 0 0 0 0 0 0
.............................................................................................................................................................................................................TAGCAGACGATTGGAGCACTTGCAGCA.................. 27 1 4 0.25 1 0 0 0 0 0 1 0 0 0 0 0 0 0
.....................................................................................................TTTACCCCACCCTATCGTTGTTGAC............................................................................................................................ 25 0 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................TGGATAGCAGACGATTGGAGCACTTGC...................... 27 0 4 0.25 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................CAGGTGGATAGCAGACGATTGGAGCACT......................... 28 0 4 0.25 1 0 1 0 0 0 0 0 0 0 0 0 0 0
........................................................AATAGCCGAGTCGATCAAGCCAT........................................................................................................................................................................... 23 0 9 0.22 2 0 0 2 0 0 0 0 0 0 0 0 0 0
......................................................TCAATAGCCGAGTCGATCAA................................................................................................................................................................................ 20 0 9 0.22 2 1 0 0 0 1 0 0 0 0 0 0 0 0
............................................................GCCGAGTCGATCAAGCCATGTCCGT..................................................................................................................................................................... 25 0 5 0.20 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.................................................TAGGATCAATAGCCGAGTCGATCAAGTT............................................................................................................................................................................. 28 2 5 0.20 1 0 0 0 1 0 0 0 0 0 0 0 0 0
....................................................................................................................CGTTGTTAGCTGTCTTTGACC................................................................................................................. 21 3 5 0.20 1 0 0 0 0 0 0 0 0 0 0 1 0 0
............................................................GCCGAGTCGATCAAGCCATGTCCGTC.................................................................................................................................................................... 26 0 5 0.20 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.................................................................GTCGATCAAGCCATGTCCGTCTGTC................................................................................................................................................................ 25 0 6 0.17 1 0 0 1 0 0 0 0 0 0 0 0 0 0
...............................................................GAGTCGATCAAGCCATGTCCGTCTG.................................................................................................................................................................. 25 0 6 0.17 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.................................................TAGGATCAATAGCCGAGTCGATCAAGA.............................................................................................................................................................................. 27 1 6 0.17 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................CGAGTCGATCAAGCCATGTCCGTCTG.................................................................................................................................................................. 26 0 6 0.17 1 0 0 1 0 0 0 0 0 0 0 0 0 0
..............................................................CGAGTCGATCAAGCCATGTCCGTCT................................................................................................................................................................... 25 0 6 0.17 1 0 0 1 0 0 0 0 0 0 0 0 0 0
..............................................................CGAGTCGATCAAGCCATGTCCGT..................................................................................................................................................................... 23 0 6 0.17 1 0 0 1 0 0 0 0 0 0 0 0 0 0
..................................................AGGATCAATAGCCGAGTCGATCAAGCCA............................................................................................................................................................................ 28 0 8 0.13 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..........................................TCTTGATTAGGATCAATAGCCGAGT....................................................................................................................................................................................... 25 0 8 0.13 1 0 0 0 0 1 0 0 0 0 0 0 0 0
.................................................................GTCGATCAAGCCATGTCCGTCTGTTA............................................................................................................................................................... 26 2 8 0.13 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................................ATCAAGCCATGTCCGTCT................................................................................................................................................................... 18 0 8 0.13 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.......................................................CAATAGCCGAGTCGATCAAACCATG.......................................................................................................................................................................... 25 1 8 0.13 1 0 0 1 0 0 0 0 0 0 0 0 0 0
......................................................TCAATAGCCGAGTCGATCAAGC.............................................................................................................................................................................. 22 0 8 0.13 1 0 0 1 0 0 0 0 0 0 0 0 0 0
......................................................TCAATAGCCGAGTCGATCAAG............................................................................................................................................................................... 21 0 8 0.13 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..................................................AGGATCAATAGCCGAGTCGATCAAGT.............................................................................................................................................................................. 26 1 8 0.13 1 0 0 0 1 0 0 0 0 0 0 0 0 0
......................................................TCAATAGCCGAGGCGATCAAGCCA............................................................................................................................................................................ 24 1 8 0.13 1 0 1 0 0 0 0 0 0 0 0 0 0 0
......................................................TAAATAGCCGAGTCGATCAAGCCA............................................................................................................................................................................ 24 1 8 0.13 1 0 0 1 0 0 0 0 0 0 0 0 0 0
......................................................TCAATAGCCGAGTCGATCAACCCA............................................................................................................................................................................ 24 1 8 0.13 1 1 0 0 0 0 0 0 0 0 0 0 0 0
............................TAAAGATTATTTATT............................................................................................................................................................................................................... 15 0 8 0.13 1 0 0 0 0 1 0 0 0 0 0 0 0 0
..........................................TCTTGATTAGGATCAATAGCCGAGTCGA.................................................................................................................................................................................... 28 0 8 0.13 1 0 0 0 1 0 0 0 0 0 0 0 0 0
...................................................GGATCAATAGCCGAGTCGATCAAGC.............................................................................................................................................................................. 25 0 8 0.13 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..................................................AGGATCAATAGCCGAGTCGATCAA................................................................................................................................................................................ 24 0 8 0.13 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................CCCTATCGTTGTTGAATG.......................................................................................................................... 18 1 17 0.12 2 0 0 2 0 0 0 0 0 0 0 0 0 0
.......................................................CAATAGCCGAGTCGATCAAGCC............................................................................................................................................................................. 22 0 9 0.11 1 0 0 1 0 0 0 0 0 0 0 0 0 0
............................................TTGATTAGGATCAATAGCCGAGT....................................................................................................................................................................................... 23 0 9 0.11 1 0 0 0 1 0 0 0 0 0 0 0 0 0
......................................................GCAATAGCCGAGTCGATCAAGCCA............................................................................................................................................................................ 24 1 9 0.11 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................CGAGTCGATCAAGCCATGGCCGTCT................................................................................................................................................................... 25 1 10 0.10 1 0 0 1 0 0 0 0 0 0 0 0 0 0
............................................................GCCGAGTCGATCAAGCCAT........................................................................................................................................................................... 19 0 11 0.09 1 0 0 1 0 0 0 0 0 0 0 0 0 0
............................................................GCCGAGTCGATCAAGCC............................................................................................................................................................................. 17 0 11 0.09 1 0 0 1 0 0 0 0 0 0 0 0 0 0
................................................TTAGGGTCAATAGCCGAGTCGATC.................................................................................................................................................................................. 24 1 11 0.09 1 0 0 1 0 0 0 0 0 0 0 0 0 0
............................................................GCCGAGTCGATCAAGCCA............................................................................................................................................................................ 18 0 11 0.09 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.......................................TATTCTTGATTAGGATCAATAGC............................................................................................................................................................................................ 23 0 11 0.09 1 0 0 1 0 0 0 0 0 0 0 0 0 0
...............................................................GAGTCGATCAAGCCATGCCCGTCTG.................................................................................................................................................................. 25 1 13 0.08 1 0 0 0 0 0 0 0 0 0 1 0 0 0
........................................................AATAGCCGAGTCGATCAAGCCT............................................................................................................................................................................ 22 1 14 0.07 1 0 0 1 0 0 0 0 0 0 0 0 0 0
..................................................AGGATCAATAGCCGAGTCGATCAT................................................................................................................................................................................ 24 1 14 0.07 1 0 0 0 0 0 1 0 0 0 0 0 0 0
.............................................TGATTAGGATCAATAGCC........................................................................................................................................................................................... 18 0 16 0.06 1 0 0 1 0 0 0 0 0 0 0 0 0 0
........................................................AATAGCCGAGTCGATCA................................................................................................................................................................................. 17 0 16 0.06 1 0 0 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................CCCTATCGTTGTTGA............................................................................................................................. 15 0 17 0.06 1 0 0 1 0 0 0 0 0 0 0 0 0 0
..............................................................CGAGTCGATCAAGCCAC........................................................................................................................................................................... 17 1 17 0.06 1 0 0 1 0 0 0 0 0 0 0 0 0 0
..........GAAGCGTTTCCGACC................................................................................................................................................................................................................................. 15 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.......................................TATTCTTGATTAGGATC.................................................................................................................................................................................................. 17 0 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0
..................................................AGGATCAATAGCCGAGTCGA.................................................................................................................................................................................... 20 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

GTCGGTCCACCTTCGCAAAGGCTGGCTTATTTCTAATAAATAAGAACTAATCCTAGTTATCGGCTCAGCTAGTTCGGTACAGGCAGACAGGTTTGGTAAATAAATGGGGTGGGATAGCAACAACTGACAAAAACTGGTGATAAGTAAATAAAAGACACGTCGATCAAGCGGTTAACATGAATTGCAGAAATTTAAGAGTCCACCTATCGTCTGCTAACCTCGTGAACGTCGGCGGAAACACCAGTGCCGA
*******************************************************************************************************((((.(((..((((((.(((............................................)))))))))))).))))............****************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 O001
Testis
 SRR553488
RT_0-2 hours eggs
 SRR902008
ovaries
 SRR618934
dsim w501 ovaries
 SRR902009
testis
 M053
female body
 M023
head
 M025
embryo
......CCACCTTCGCAAAGGCTGGCTTATTT.......................................................................................................................................................................................................................... 26 0 4 1.75 7 2 3 1 0 0 0 0 0 1 0 0
.......CACCTTCGCAAAGGCTGGCTTATTT.......................................................................................................................................................................................................................... 25 0 4 1.50 6 5 1 0 0 0 0 0 0 0 0 0
.........................................AAGAACTAATCCTAGTTATCGGCTCAGCT.................................................................................................................................................................................... 29 0 8 0.75 6 0 0 5 0 1 0 0 0 0 0 0
..........CTTCGCAAAGGCTGGCTTATTTCTA....................................................................................................................................................................................................................... 25 0 4 0.75 3 3 0 0 0 0 0 0 0 0 0 0
......CCACCTTCGCAAAGGCTGGCTTATTTCT........................................................................................................................................................................................................................ 28 0 4 0.75 3 2 1 0 0 0 0 0 0 0 0 0
............TCGCAAAGGCTGGCTTATTTCTA....................................................................................................................................................................................................................... 23 0 4 0.75 3 2 0 1 0 0 0 0 0 0 0 0
.............................................ACTAATCCTAGTTATCGGCTC........................................................................................................................................................................................ 21 0 12 0.67 8 0 0 0 8 0 0 0 0 0 0 0
..............................................CTAATCCTAGTTATCGGCTCAGCTAG.................................................................................................................................................................................. 26 0 9 0.67 6 0 0 0 6 0 0 0 0 0 0 0
..............................................................................ACAGGCAGACAGGTTTGGTAAATAAAT................................................................................................................................................. 27 0 4 0.50 2 0 1 1 0 0 0 0 0 0 0 0
.......CACCTTCGCAAAGGCTGGCTTATTTCT........................................................................................................................................................................................................................ 27 0 4 0.50 2 1 1 0 0 0 0 0 0 0 0 0
.......CACCTTCGCAAAGGCTGGCTTATT........................................................................................................................................................................................................................... 24 0 4 0.50 2 1 0 1 0 0 0 0 0 0 0 0
.......CACCTTCGCAAAGGCTGGCTTATTTCTA....................................................................................................................................................................................................................... 28 0 4 0.50 2 1 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................GATAAGTAAATAAAAGACACGTCGAT...................................................................................... 26 0 4 0.50 2 1 0 0 0 0 1 0 0 0 0 0
......CCACCTTCGCAAAGGCTGGCTTATT........................................................................................................................................................................................................................... 25 0 4 0.50 2 2 0 0 0 0 0 0 0 0 0 0
......CCACCTTCGCAAAGGCTGGCTTATTTCTA....................................................................................................................................................................................................................... 29 0 4 0.50 2 1 0 1 0 0 0 0 0 0 0 0
............TCGCAAAGGCTGGCTTATTTCTAATAAAT................................................................................................................................................................................................................. 29 0 4 0.25 1 0 0 0 0 0 0 0 1 0 0 0
.............CGCAAAGGCTGGCTTATTTCTAATAA................................................................................................................................................................................................................... 26 0 4 0.25 1 0 0 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................TTGCAGAAATTTAAGAGTCCACCTAT........................................... 26 0 4 0.25 1 0 0 0 0 0 1 0 0 0 0 0
............TCGCAAAGGCTGGCTTATTTCT........................................................................................................................................................................................................................ 22 0 4 0.25 1 0 1 0 0 0 0 0 0 0 0 0
..CGGTCCACCTTCGCAAAGGCTGGCTTAT............................................................................................................................................................................................................................ 28 0 4 0.25 1 0 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................TGCAGAAATTTAAGAGTCCACCTATCGT........................................ 28 0 4 0.25 1 0 1 0 0 0 0 0 0 0 0 0
......................................................AGTTATCGGCTCAGCTAGTTCGGT............................................................................................................................................................................ 24 0 8 0.25 2 0 1 0 0 0 1 0 0 0 0 0
............................................................................................................................................................................TAACATGAATTGCAGAAATTTAAGAGT................................................... 27 0 4 0.25 1 0 1 0 0 0 0 0 0 0 0 0
..........CTTCGCAAAGGCTGGCTTATTTCT........................................................................................................................................................................................................................ 24 0 4 0.25 1 0 0 0 0 1 0 0 0 0 0 0
..................................................................................................................................................................................GAATTGCAGAAATTTAAGAGTCCACCT............................................. 27 0 4 0.25 1 0 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................TGCAGAAATTTAAGAGTCCACCTAT........................................... 25 0 4 0.25 1 0 0 1 0 0 0 0 0 0 0 0
...............................................................................CAGGCAGACAGGTTTGGTAAATAAA.................................................................................................................................................. 25 0 4 0.25 1 0 0 0 0 1 0 0 0 0 0 0
.....................................................................................................................................................................................................................................CGGCGGAAGCACCAGTGCC.. 19 1 4 0.25 1 0 0 0 0 0 0 0 0 0 1 0
...............CAAAGGCTGGCTTATTTCTAA...................................................................................................................................................................................................................... 21 0 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0
........ACCTTCGCAAAGGCTGGCTTATTTCTA....................................................................................................................................................................................................................... 27 0 4 0.25 1 0 1 0 0 0 0 0 0 0 0 0
.........................................................................TCGGTACAGGCAGACAGGTCTGGTAAAT..................................................................................................................................................... 28 1 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0
...............CAAAGGCTGGCTTATTTCTAATAAAT................................................................................................................................................................................................................. 26 0 4 0.25 1 0 0 0 0 0 1 0 0 0 0 0
.........................................................................TCGGTACAGGCAGACAGGTTTGGTAAAT..................................................................................................................................................... 28 0 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................................TCGGTACAGGCAGACAGGTTTGGT......................................................................................................................................................... 24 0 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0
..........................................................................CGGTACAGGCAGACAGGTTTGGT......................................................................................................................................................... 23 0 4 0.25 1 0 0 0 0 0 0 1 0 0 0 0
..............................................................................ACAGGCAGACAGGTTTGGTAAAT..................................................................................................................................................... 23 0 4 0.25 1 0 0 1 0 0 0 0 0 0 0 0
......................................................................................................................................................................AGCGGTTAACATGAATTGCAGAAATTT......................................................... 27 0 4 0.25 1 0 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................GAATTGCAGAAATTTAAGAGTCCAC............................................... 25 0 4 0.25 1 0 1 0 0 0 0 0 0 0 0 0
.........CCTTCGCAAAGGCTGGCTTATTTCTA....................................................................................................................................................................................................................... 26 0 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................AAAATAAAAGACACGTCGATCAAGCGGT.............................................................................. 28 1 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................ACACGTCGATCAAGCGGTTAACATGAAT.................................................................... 28 0 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................ATGAATTGCAGAAATTTAAGAGTCCAC............................................... 27 0 4 0.25 1 0 0 0 0 1 0 0 0 0 0 0
.........CCTTCGCAAAGGCTGGCTTATTTCT........................................................................................................................................................................................................................ 25 0 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0
..................................................................AGCTAGTTCGGTACAGGCAGACAGG............................................................................................................................................................... 25 0 5 0.20 1 0 0 0 0 0 0 1 0 0 0 0
............................................................CGGCTCAGCTAGTTCGGTACAGGCAG.................................................................................................................................................................... 26 0 5 0.20 1 0 0 0 0 0 1 0 0 0 0 0
.................................................ATCCTAGTTATCGGCTCAGCTAG.................................................................................................................................................................................. 23 0 12 0.17 2 0 0 0 0 0 0 2 0 0 0 0
............................................................TGGCTCAGCTAGTTCGGTACAGGCAG.................................................................................................................................................................... 26 1 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0
..............................................................GCTCAGCTAGTTCGGTACAGGCAG.................................................................................................................................................................... 24 0 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0
....................................................CTAGTTATCGGCTCAGCTAGTTC............................................................................................................................................................................... 23 0 8 0.13 1 1 0 0 0 0 0 0 0 0 0 0
..........................................TGAACTAATCCTAGTTATCGGCTCAGCT.................................................................................................................................................................................... 28 1 8 0.13 1 0 0 1 0 0 0 0 0 0 0 0
..........................................AGAACTAATCCTAGTTATCGGCTCAGCT.................................................................................................................................................................................... 28 0 8 0.13 1 0 0 1 0 0 0 0 0 0 0 0
.............................................ACTAATCCTAGTTATCGGCTCAGCT.................................................................................................................................................................................... 25 0 9 0.11 1 0 0 1 0 0 0 0 0 0 0 0
...............................................TAATCCTAGTTATCGGCTCAGCTAG.................................................................................................................................................................................. 25 0 9 0.11 1 0 0 0 0 0 0 1 0 0 0 0
.......................................................GTTATCGGCTCAGCTAGTTC............................................................................................................................................................................... 20 0 9 0.11 1 0 0 0 0 0 0 0 1 0 0 0
.............................................................GGCTCAGCTAGTTCGGTAC.......................................................................................................................................................................... 19 0 10 0.10 1 0 0 0 0 0 0 0 1 0 0 0
.............................................................................................................TGGGATTGCACCAGCTGAC.......................................................................................................................... 19 3 10 0.10 1 0 0 0 0 1 0 0 0 0 0 0
............................................................CGGCTCAGCTAGTTCGGT............................................................................................................................................................................ 18 0 11 0.09 1 0 0 0 0 0 0 1 0 0 0 0
......................................................................................................................................................................................................................................GGCGGAAACACTAGTGCC.. 18 1 11 0.09 1 1 0 0 0 0 0 0 0 0 0 0
..........................................AGAACTAATCCTAGTTATCGGCTAAGC..................................................................................................................................................................................... 27 1 11 0.09 1 0 0 0 0 1 0 0 0 0 0 0
.....................................................................................................................CAAAAACTGACAAAAACTAGC................................................................................................................ 21 3 12 0.08 1 0 0 0 0 0 0 0 1 0 0 0
................................TTAATAAATAAGAACTAGTCCTAGTTA............................................................................................................................................................................................... 27 2 13 0.08 1 1 0 0 0 0 0 0 0 0 0 0
..................................................................................GGAGACAGGTCTGGTAA....................................................................................................................................................... 17 2 13 0.08 1 1 0 0 0 0 0 0 0 0 0 0
................................................AATCCTAGTTATCAGCTCAGCTAG.................................................................................................................................................................................. 24 1 15 0.07 1 0 0 0 0 0 0 0 0 1 0 0
...............................................................CTCAGCTAGTTCGGT............................................................................................................................................................................ 15 0 15 0.07 1 0 0 0 0 0 0 1 0 0 0 0
.................................................................................GGCAGACTGGTTTAGTA........................................................................................................................................................ 17 2 18 0.06 1 0 0 0 0 1 0 0 0 0 0 0
....................................................CTAGTTATCGGCTCAGCTA................................................................................................................................................................................... 19 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1
......................................................................................AAAGGTTTGGTAAATTAAT................................................................................................................................................. 19 2 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2l:20983250-20983499 + dsi_15942 CAGCCAGGTGGAAGCGTTTCCGACCGA-ATAAAGATTATTTATTCTTGATTAGGATCAATAGCCGAGTCGATCA--AGCCATGTCCGTCTGTCCAA---ACCATTTATTTACCC------------------------CACCCTATCGTT-------------------G---------TTGA-------------CTGTTTTTGACCACTATTC--------ATTTATTTTCTGT----------------------GC-AGCTAG---------------------------------------------------T--------TCGCCAATTGTA------------------------C---------------TTAACGTCTTTAAATTCT----------------------CAGGTGGA-TAGCAGAC-----------GATTGGAGCACTTGCAGCCGCCTTTGTGGTCACGGCT
droSec2 scaffold_28:256100-256337 + dse_1133 -----------AAGCGTTTCCGACCGA-ATAAACATTATTTATTCTTGATTAGGATCAATAGCCGAGTCGATCA--AGCCATGTCCGTCTGTCCAA---ACCATTTATTTACCC------------------------CACCCTATCGTG-----------------------------TTGA-------------CTGTTTTTGGCCACTATTC--------ATTTATTTTCTGT----------------------GC-AGCTAG---------------------------------------------------T--------TCGCCAATTGTA------------------------C---------------TTAACCTCTTTAAATTCT----------------------CAGGTGGA-TAGCAGAC-----------GATTGGAGCACTTGCAGCCGCCTTTGTGGTCACGGCT
dm3 chr2L:21710876-21711130 + CAGGCAGGGGGAAACGTTTCCGACCAAAATAAAGAATATTTATTTTTGATTAGGATCAATGGCCGAGTCGAACT--GCCCCTGTCCGTCTGTCCTA---ACCATTTATTTTCCC------------------------CACCCTATCGTG---------------TGCCA---------TTGA-------------CTGCTTATGGCCACTATTC--------ATTTATTTTCTGT----------------------GC-AGCTAG---------------------------------------------------T--------TCGCCAATTGTA------------------------C---------------TTAACATCTTTAAATTCT----------------------TAGGTGGA-TAGCAGAC-----------GATTGGAGCACTTGCAGCCGCCTTTGTGGTCACGGCT
droEre2 scaffold_4784:3287216-3287430 - CAGATAGAAGAAAGCATTTTCGAGCTA-ACAAAGTAGAAATATTCTTGATCAGAATCACTAGGCGAGTTGTTCG--TGCTGAGTACCGGGTATCTG---A------------------------TAGTCCGGAAACTCGACCATCGCGTT-------------------C---------TCTC-------------TTGTTTTTCAT------------------TCAATTTGCTA----------------------CC-TTTGAG---------------------------------------------------T--------GCTCAAATTGCA------------------------A---------------AGCGCGTCATTCGCTTAG----------------------CAGGTGGAATGGCAGGT-----------GCATCGGGTAC--------------------------
droYak3 2R:1849494-1849740 + CAGGCAGAAGTAATCGTTTCCGTCCAT-ATAACGTATGTATATTTTTGATCAGGATCAATAGCCGGGTCAATCT--GGCCATATCCGCCTGTCCGT----------------------------CCGTCTGTCCAAAGGAGCC----ACGCCGACACTTTT--------GAAAAATGTT-----------------------TTAATATTTTTTC--------ATTTTT-----------------------------GT--ATTAG---------------------------------------------------T--------CTTTTAACTCTCCTTCGTACTTCCACTAGCAGCTG----------------G----------------------------------------GTAACGGG-TATCATAT-----------AGTCGGGGAACTCGAAACGCAGCTTGTGGTTA-----
droEug1 scf7180000408749:13418-13605 - CAGGTAG----AAGAGTTTCCGAACCT-ATAAAGTATATATATTCTTAATCAGTATCAATAGCGATGTCGATTA--AGCAACGTCCGTCTGTCCATATGACATGCTATATGTAATTCGAGCTACA------------------------------------AATGC--------TGCTG-----------------------TTAAAATTTCTTC--------ATTTTTTT---------------------------TT-AGCGAT---------------------------------------------------T--------TCTGAAATTGTA-----------------------A-CT---------------------TTTAACTGTT----------------------AAGG------------------------------------T------------------------
droBia1 scf7180000301581:1635-1878 + CGCAGTGAAGGAGACGTTTCCGACCCC-ATAAAGTAAATATATTCTTGATCAGCGTCACTAGATGAGTCGATCT--AGCCATGTCCGTCTGTACGTCCGTCAGCCCGTCTGTCTGT--------CCGTCCGTCTGC------------------------------------------------------------------------------------------------------------CCGTCCGTTTTTACGCAAACTAGTCTCTC-----ACTTCTAGA-------------------------------------------------------------------------------------------GCTATCGGGCTGAAACTTTCCTTAAAATCTTCTTTCTATTTCAGGTAGT-TATAAGTCGGAACCAGCCGGATCGGAGAACTT------------------------
droTak1 scf7180000411009:3472-3644 + CGCAGTGAAGGAGACGTTTCCGACCAC-ATAAAGTATATATATTCTTGATCAGGACCAATAGCCGAGTCTATCT--AGCCATGTCCGTCTGTCCGTCTGTCTGTCTGTCCGTCTGTCTGTCCGTC------------------------------------TGTCT--------GT---------------------------------CTGTCC--------GT-------------------CTGTCCGTTTCTATGCGAACTAGTCTCTC-----AGTTTTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEle1 scf7180000491111:46822-47016 + CGCAGTGAAGGAGACGTTTCCGACCCT-ATAAAGTGCATATATTCTTGATCAGCGTCGCTAGGAAAGTCGATCT--AGCCATGTCCGTCTGTCCGT----------------------------CTGTCCGTCTGTCCGTCCG--------------------------------------------------------------------------------------------------------TCCGTTTCTACGAAAACTAGTCTCTC-----AGTTTTAAA-------------------------------------------------------------------------------------------GCTATCTGCATGCAACTTTGCCAAAAGTTGTCTTTCAATTCCAGGTGG----------------------------------------------------------
droRho1 scf7180000764194:1666-1865 + CGCAGTGAAGGAGACATTTCCGACCCT-ATAAAGTATATATATTCTTGATCAGCATCACCAGGAGAGTCGATCT--AGCCATGTCCGTCTGTCCGTCTGTCCGTCCGTCTGTCCGTCCGTCTGTC------------------------------------CGTCC--------GTCTG---------------------------------TCCGTCTGTCCGT-------------------CCGTCCGTTTCTACGC-AACTAGTCCCTC-----AGTTT------------------------------------------------------AA---------------------------------------GCTATCTGCTTG-AACTTTCC-------------------------------------------------------------------------------------
droFic1 scf7180000453928:50770-50946 + CGCAGTGAAGGAGGCACCTTCGACCCC-ATAAAGTATATATATTCTTGATCAGCATCACGATCTGAGTCGAAAT--CCGTCTGTACGTCTGTCCGT----------------------------CGGTCCGTCTGTCCGTCGG---------------------------------ACCGTCA-------------TTGTTTTTCATCACACGAC--------TATGGTTTTTTGA----------------------GT-ATCAAG---------------------------------------------------T--------TTTTTAACTAGC------------------------C---------------TTGA-----------------------------------------------------------------------------------------------------
droKik1 scf7180000302281:145832-146025 + ---------GGAGACCTTTCCGACCCA-ATAA--TATATATATTCTTGATCATCATCAACAGCCGAGTCGATCT--AGCCATGTCCGTCTATGCA----------------------------------------------------------------------------------------------------------------------------------------------------------------------AACTAGTCCCTCGACAAAATTTTATAGCTTGGTTGTTTATCAACATTTTTGCTCCATTTTTGAAATATGGCCATTTTA-----------------------------------------TATTATTTTTCAACTTT----------------------CA--TGAA-AAGCGGAC-----------GACT---------------------------------
droAna3 scaffold_12605:13706-13928 - CGCAGTGAAGGAGACATCTCCGACCCT-ATAAAGTATAT-------TGATCAGGATCACCTCCTGAGTCGATAT--AAGCATGTCCGTCTGTCCGT----------------------------CTGTCCGTCTGTCCGTCTG----TCCGTCTGTCTGTCTGTCT--------GTCTG---------------------------------TCCGTCTGTCT-------GTCTGTCCGTCTGTCTGTCTGTTTCTACGCAAAGTAGTCTCTC-----AGTTTTAAA-------------------------------------------------------------------------------------------GCTATCGAGTTGAAACTTTGC---------------------------------------------------------------ACACACCCTT------------
droBip1 scf7180000395783:15215-15408 - CGCAGTGAAGGAGACATTTCCGACCCT-ATAAAGTATATATATTCTTGATCAGGATCACCTCCTGAGTTGATAT--AAGCATGTCCGTCTGTCCGTCTGTCCGTCTGTCTGTCCGTCTGTCTGTC------------------------------------CGTCT--------GTCTG---------------------------------TCC--------GT-------------------CTGTCTGTTTCTACGCGAACTAGTCTCTC-----AGTTTTAAA-------------------------------------------------------------------------------------------GCTATCGTCTTGAAACTTT---------------------------------------------------------------------------------------
dp5 3:8177043-8177184 - CACCCAGAAGGGAGCGTTTCCGACCCC-ATAAAGTATATATATTCTTGATCAGCATCAATAGCCGAGACGATAT--AGCCATGTCTTTCTT---------------GTTTCTCT------------------------CTTCTTTTCTT------------------------------------------------------------------------------------------------------------TG--AAAAAGTATTTG-----AGA--------------------------------------------------------------------------------------------------ACCTCCTATTTATTTTT---------------------------------------------------------------T------------------------
droPer2 scaffold_94:208958-209105 + CGTCCAGAAGGAATCGTTTCCGACCCC-ATAAAGTATATATATTCTTGATCAGCATCAATAGCCGAGTCGATTG--AGCCATGTCA-TCCATCCATGAATCA--------------------------------------TCCTAACTT------------------------AAAAACTTCA-------TTACTGCTGTTTGTGAATATAATTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATTA---------------------------------------------------------------T------------------------
droWil2 scf2_1100000004962:393077-393273 - CGCATAGAAGGAAGCATCTCCGACCAT-ATAAAGTATATATATTCTTGATCAGCATGACGAGACGAGTTCATAT--AGCCATGTCCGTCCGTCCTT----------------------------CCGTCTGTCCGTCCGTCTG----TCAACAGTGACTTT--------GATCAATATC---------------------------------TTCGTTTTTTC-------CTATGCTAAGATTGTTGGCCGTTCTTTCGCAAG-----------------------------------------------------------------------------------------------------CA-------------TTAGCCTTTTTAGA------------------------------------------------------------------T------------------------
droVir3 scaffold_12963:12953657-12953818 + CAGGCAGAAGGAAGCATCTCCGACCCC-ATAAAGTATATTTATTCTTGATCAGCATCAATAGCCGAGTCGATCT--AGCCATGTCCGACTTTCTGT----------------------------CCGTCCGTCCGTCCGTCCGTATGGTT-------------------A---------TT------------------------GCGAC-----------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTTCTGTAATGCTATT-----------------TAAGTTTTTTTTTTA-------------------------------------------T------------------------
droMoj3 scaffold_6680:24096754-24096961 + GGC--AGAAGGAGGCGTGGCAGACCCC-ACAAAGTATATATATTCTTGATCAGGGCGACGAGCGGAGTCGATTT--GGCCCTGTCCGTCTGTCTGT----------------------------CCGTCCGTCCGTCCGTCCGTATGTA--------TG--AACGCGTCG---------ATAACTACTCC------CGATATTTTATTATCGATC--------AAAAACCTTATCG----------------------AA-AGCTAG---------------------------------------------------T--------TATTTAATTATA-----------------------T-CT-------------CTTACACCTTTAGA-------------------------------------------------------------------------------------------
droGri2 scaffold_15126:8283113-8283273 - TAGGCAGAAAGAAGCATTTCTACCCTC-AAAAAGTATATATTTTTTTGCTCAGGAGCAACAGCTGAGTCGATATACAGCTATGTCAGTCCTTCTGT----------------------------TTGCCTGTATGC---------------------------------------------AA-------------TTATTTT-------------------------------------------------------A--CATAAGTCTGGC-----AATGTTTAA-------------------------------------------------------------------------------------------TGAATTTT-ATTTACTGTA----------------------CATT------------------------------------T------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
CAGCCAGGTGGAAGCGTTTCCGACCGA-ATAAAGATTATTTATTCTTGATTAGGATCAATAGCCGAGTCGATCA--AGCCATGTCCGTCTGTCCAA---ACCATTTATTTACCC------------------------CACCCTATCGTT-------------------G---------TTGA-------------CTGTTTTTGACCACTATTC--------ATTTATTTTCTGT----------------------GC-AGCTAG---------------------------------------------------T--------TCGCCAATTGTA------------------------C---------------TTAACGTCTTTAAATTCT----------------------CAGGTGGA-TAGCAGAC-----------GATTGGAGCACTTGCAGCCGCCTTTGTGGTCACGGCTSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.......................................................TCAATAGCCGAGTCGATCA--AGCCA...................................................................................................................................................................................................................................................................................................................................................................................................................2488.63690000002535025020000
....................................................................................................................................................................................TGA-------------CTGTTTTTGACCACTATTC--------ATT..................................................................................................................................................................................................................................................................2542.00800000030320000000
..................................................TAGGATCAATAGCCGAGTCGATC...........................................................................................................................................................................................................................................................................................................................................................................................................................23121.331600000084301000000
........................................................CAATAGCCGAGTCGATCA--A.......................................................................................................................................................................................................................................................................................................................................................................................................................19101.001000009000000100000
...................................................................................................................................................................................................................................................................................................................................................................................................TTTAAATTCT----------------------CAGGTGGA-TAGCAGA.................................................2541.00400000011200000000
..................................................TAGGATCAATAGCCGAGTC...............................................................................................................................................................................................................................................................................................................................................................................................................................19150.9314000001400000000000
..................................................TAGGATCAATAGCCGAGTCGATCA--AG......................................................................................................................................................................................................................................................................................................................................................................................................................2650.80400000030100000000
..................................................TAGGATCAATAGCCGAGTCGATCA--AGC.....................................................................................................................................................................................................................................................................................................................................................................................................................2750.80400000011200000000
.....................................................................................................................................................................................................................................................................AGCTAG---------------------------------------------------T--------TCGCCAATTGTA------------------------C---------------TTAACGTC.................................................................................................2840.75300000000210000000
........................................................CAATAGCCGAGTCGATCA--AGCCATG.................................................................................................................................................................................................................................................................................................................................................................................................................2580.75600000010005000000
......................................................ATCAATAGCCGAGTCGATCA--AGCCA...................................................................................................................................................................................................................................................................................................................................................................................................................2580.75600000042000000000
........................................................CAATAGCCGAGTCGATCA--AGCCAT..................................................................................................................................................................................................................................................................................................................................................................................................................2490.67600010000103010000
............................................................AGCCGAGTCGATCA--AGCCATG.................................................................................................................................................................................................................................................................................................................................................................................................................2180.63500000000005000000
..................................................TAGGATCAATAGCCGAGTCGAT............................................................................................................................................................................................................................................................................................................................................................................................................................22130.62800000030410000000
........................................................CAATAGCCGAGTCGATCA--AGCCA...................................................................................................................................................................................................................................................................................................................................................................................................................2390.56500010001111000000
..............................................................CCGAGTCGATCA--AGCCATGT................................................................................................................................................................................................................................................................................................................................................................................................................2060.50300003000000000000
.............................................................................................................................................CCTATCGTT-------------------G---------TTGA-------------CTGTTTTTGACCA...................................................................................................................................................................................................................................................................................2740.50200000011000000000
..................................................TAGGATCAATAGCCGAGTCGATCA--A.......................................................................................................................................................................................................................................................................................................................................................................................................................2550.40200000011000000000
............................................................AGCCGAGTCGATCA--AGCCATGTCCGTC...........................................................................................................................................................................................................................................................................................................................................................................................................2750.40200000000002000000
...........................................................TAGCCGAGTCGATCA--AGCCATGTC...............................................................................................................................................................................................................................................................................................................................................................................................................2460.33200000000001010000
........................................................CAATAGCCGAGTCGATCA--AGCCATGT................................................................................................................................................................................................................................................................................................................................................................................................................2660.33200000000000002000
............................................................AGCCGAGTCGATCA--AGCCATGTC...............................................................................................................................................................................................................................................................................................................................................................................................................2360.33200000000002000000
..................................................................GTCGATCA--AGCCATGTCCGTC...........................................................................................................................................................................................................................................................................................................................................................................................................2170.29200000000002000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAGCACTTGCAGCC..................1740.25100000000001000000
........................................................................................................TTATTTACCC------------------------CACCCTATCGTT-------------------G---------TT...............................................................................................................................................................................................................................................................................................................2540.25100000001000000000
.........................................................................................................................................................................................................................................................................AG---------------------------------------------------T--------TCGCCAATTGTA------------------------C---------------TTAACGTCT................................................................................................2540.25100000000001000000
.........................................................................................................................................................................................................................................................................................................................................................................................................TTCT----------------------CAGGTGGA-TAG.....................................................1540.25100000000001000000
.........................................................................................................................................................................................................TTTGACCACTATTC--------ATTTATTTTCTGT----------------------..................................................................................................................................................................................................................................2740.25100000000010000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGAC-----------GATTGGAGCACTTGCAGC...................2540.25100000000000010000
..GCCAGGTGGAAGCGTT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1640.25100000000001000000
...........................................................................................................................................................................................................................................................................................................................................................................................TTAACGTCTTTAAATTCT----------------------CAGGTGGA-........................................................2640.25100000000010000000
........................................................................................................................................................................................................................................................................TAG---------------------------------------------------T--------TCGCCAATTGTA------------------------C---------------TTAACGTCTT...............................................................................................2740.25100000000100000000
............................................................................................................................................................................................................................................................................................................................................................................................TAACGTCTTTAAATTCT----------------------CAGGTGGA-........................................................2540.25100000001000000000
.........................................................................................TGTCCAA---ACCATTTATTTACCC------------------------CACCC.....................................................................................................................................................................................................................................................................................................................................................2740.25100000000010000000
..................................................................................................................................................................................................................................TATTTTCTGT----------------------GC-AGCTAG---------------------------------------------------T--------TCGCCAA......................................................................................................................................................2640.25100000010000000000
.......................................................................................................................................................................................................................................TCTGT----------------------GC-AGCTAG---------------------------------------------------T--------TCGCCAATTGTA------------------------C---------------T........................................................................................................2840.25100000000010000000
.......................................................TCAATAGCCGAGTCGATCA--AGCC....................................................................................................................................................................................................................................................................................................................................................................................................................2380.25200000000002000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................TAGCAGAC-----------GATTGGAGCACTTGCAGC...................2640.25100000001000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................TAGCAGAC-----------GATTGGAGCACTTGC......................2340.25100000000000010000
................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAC-----------GATTGGAGCACTTGCAGCCGCCTT.............2840.25100000000000010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGCAGCCGCCTTTGTGG........1940.25100000000001000000
.......................................................TCAATAGCCGAGTCGATC...........................................................................................................................................................................................................................................................................................................................................................................................................................18200.25500000003002000000
.....................................................................................................................................................................................................................................................................................................................................................................................................TAAATTCT----------------------CAGGTGGA-TAGCAGAC-----------GA...................................2640.25100000000010000000
...............................................................................................................................................................................................................................................................................................................................................TGTA------------------------C---------------TTAACGTCTTTAAATTCT----------------------CAGG.............................................................2740.25100000000010000000
............................................................................................................................................................................................................................................................................................................................................................................................................T----------------------CAGGTGGA-TAGCAGAC-----------GATTGGAGC............................2640.25100000001000000000
..........................................TTCTTGATTAGGATCAATAGCCGAGT................................................................................................................................................................................................................................................................................................................................................................................................................................2680.25200000000020000000
....................................................................................................................................................................................................................................TTTTCTGT----------------------GC-AGCTAG---------------------------------------------------T--------TCGCCAA......................................................................................................................................................2440.25100000001000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................TTCT----------------------CAGGTGGA-TAGCAGAC-----------GATTGG...............................2640.25100000010000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................TTCT----------------------CAGGTGGA-TAGCAGA.................................................1940.25100000000001000000
.................................................................................................................................................................................................................................................................................................................................................TA------------------------C---------------TTAACGTCTTTAAATTCT----------------------CAGGTGGA-........................................................2940.25100000001000000000
................................................................................................................................................................................................................................TTTATTTTCTGT----------------------GC-AGCTAG---------------------------------------------------T--------TCGCCAAT.....................................................................................................................................................2940.25100000001000000000
......................................TTTATTCTTGATTAGGATCAATAGCCGAGT................................................................................................................................................................................................................................................................................................................................................................................................................................3040.25100000010000000000
.......................................................TCAATAGCCGAGTCGATCA--AGCCATG.................................................................................................................................................................................................................................................................................................................................................................................................................2680.25200010000000010000
....................................................GGATCAATAGCCGAGTCGATCA--AGCCA...................................................................................................................................................................................................................................................................................................................................................................................................................2780.25200000020000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................C-----------GATTGGAGCACTTGCAGCCGCCTT.............2540.25100000000010000000
................................................................................................................................................................................................................................................................................................................................................................................................GTCTTTAAATTCT----------------------CAGGTGGA-TAGCAGA.................................................2840.25100000001000000000
.............................................................................................................TACCC------------------------CACCCTATCGTT-------------------G---------TTGA-------------CTGTT...........................................................................................................................................................................................................................................................................................2740.25100000010000000000
........................................................................................................................................................................................................................................................................TAG---------------------------------------------------T--------TCGCCAATTGTA------------------------C---------------TTAACGTCT................................................................................................2640.25100000000100000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................TGGA-TAGCAGAC-----------GATTGGAGCACTTGCAGC...................3040.25100000001000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAC-----------GATTGGAGCACTTGCAGCCGCC...............2640.25100000000000010000
............................................................................................................................................................................................................................................................................................................................................................................................................................................TAGCAGAC-----------GATTGGAGCACTTGCAGCA..................2740.25100000000000010000
...........................................................................................................TTTACCC------------------------CACCCTATCGTT-------------------G---------TTGA-------------C...............................................................................................................................................................................................................................................................................................2540.25100000001000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................TGGA-TAGCAGAC-----------GATTGGAGCACTTGC......................2740.25100000000001000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGTGGA-TAGCAGAC-----------GATTGGAGCACT.........................2840.25100000010000000000
.........................................................AATAGCCGAGTCGATCA--AGCCAT..................................................................................................................................................................................................................................................................................................................................................................................................................2390.22200000000002000000
.......................................................TCAATAGCCGAGTCGATCA--A.......................................................................................................................................................................................................................................................................................................................................................................................................................2090.22200000001100000000
.............................................................GCCGAGTCGATCA--AGCCATGTCCGT............................................................................................................................................................................................................................................................................................................................................................................................................2550.20100000001000000000
..................................................TAGGATCAATAGCCGAGTCGATCA--AGTT....................................................................................................................................................................................................................................................................................................................................................................................................................2850.20100000000010000000
.............................................................GCCGAGTCGATCA--AGCCATGTCCGTC...........................................................................................................................................................................................................................................................................................................................................................................................................2650.20100000000001000000
..................................................................GTCGATCA--AGCCATGTCCGTCTGTC.......................................................................................................................................................................................................................................................................................................................................................................................................2560.17100000000001000000
................................................................GAGTCGATCA--AGCCATGTCCGTCTG.........................................................................................................................................................................................................................................................................................................................................................................................................2560.17100000000001000000
..................................................TAGGATCAATAGCCGAGTCGATCA--AGA.....................................................................................................................................................................................................................................................................................................................................................................................................................2760.17100000010000000000
...............................................................CGAGTCGATCA--AGCCATGTCCGTCTG.........................................................................................................................................................................................................................................................................................................................................................................................................2660.17100000000001000000
...............................................................CGAGTCGATCA--AGCCATGTCCGTCT..........................................................................................................................................................................................................................................................................................................................................................................................................2560.17100000000001000000
...............................................................CGAGTCGATCA--AGCCATGTCCGT............................................................................................................................................................................................................................................................................................................................................................................................................2360.17100000000001000000
...................................................AGGATCAATAGCCGAGTCGATCA--AGCCA...................................................................................................................................................................................................................................................................................................................................................................................................................2880.13100000010000000000
...........................................TCTTGATTAGGATCAATAGCCGAGT................................................................................................................................................................................................................................................................................................................................................................................................................................2580.13100000000100000000
..................................................................GTCGATCA--AGCCATGTCCGTCTGTTA......................................................................................................................................................................................................................................................................................................................................................................................................2680.13100000010000000000
......................................................................ATCA--AGCCATGTCCGTCT..........................................................................................................................................................................................................................................................................................................................................................................................................1880.13100000000001000000
.......................................................TCAATAGCCGAGTCGATCA--AGC.....................................................................................................................................................................................................................................................................................................................................................................................................................2280.13100000000001000000
.......................................................TCAATAGCCGAGTCGATCA--AG......................................................................................................................................................................................................................................................................................................................................................................................................................2180.13100000001000000000
...................................................AGGATCAATAGCCGAGTCGATCA--AGT.....................................................................................................................................................................................................................................................................................................................................................................................................................2680.13100000000010000000
.............................TAAAGATTATTTATT........................................................................................................................................................................................................................................................................................................................................................................................................................................................1580.13100000000100000000
...........................................TCTTGATTAGGATCAATAGCCGAGTCGA.............................................................................................................................................................................................................................................................................................................................................................................................................................2880.13100000000010000000
....................................................GGATCAATAGCCGAGTCGATCA--AGC.....................................................................................................................................................................................................................................................................................................................................................................................................................2580.13100000010000000000
...................................................AGGATCAATAGCCGAGTCGATCA--A.......................................................................................................................................................................................................................................................................................................................................................................................................................2480.13100000001000000000
........................................................CAATAGCCGAGTCGATCA--AGCC....................................................................................................................................................................................................................................................................................................................................................................................................................2290.11100000000001000000
.............................................TTGATTAGGATCAATAGCCGAGT................................................................................................................................................................................................................................................................................................................................................................................................................................2390.11100000000010000000
.............................................................GCCGAGTCGATCA--AGCCAT..................................................................................................................................................................................................................................................................................................................................................................................................................19110.09100000000001000000
.............................................................GCCGAGTCGATCA--AGCC....................................................................................................................................................................................................................................................................................................................................................................................................................17110.09100000000001000000
.............................................................GCCGAGTCGATCA--AGCCA...................................................................................................................................................................................................................................................................................................................................................................................................................18110.09100000000001000000
........................................TATTCTTGATTAGGATCAATAGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................23110.09100000000001000000
.........................................................AATAGCCGAGTCGATCA--AGCCT...................................................................................................................................................................................................................................................................................................................................................................................................................22140.07100000000001000000
...................................................AGGATCAATAGCCGAGTCGATCA--T.......................................................................................................................................................................................................................................................................................................................................................................................................................24140.07100000000000010000
..............................................TGATTAGGATCAATAGCC....................................................................................................................................................................................................................................................................................................................................................................................................................................18160.06100000000001000000
.........................................................AATAGCCGAGTCGATCA--........................................................................................................................................................................................................................................................................................................................................................................................................................17160.06100000000001000000
............................................................................................................................................CCCTATCGTT-------------------G---------TTGA-------------................................................................................................................................................................................................................................................................................................15170.06100000000001000000
...............................................................CGAGTCGATCA--AGCCAC..................................................................................................................................................................................................................................................................................................................................................................................................................17170.06100000000001000000
..........GAAGCGTTTCCGACC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................15200.05100000000001000000
........................................TATTCTTGATTAGGATC...........................................................................................................................................................................................................................................................................................................................................................................................................................................17200.05100000000001000000
...................................................AGGATCAATAGCCGAGTCGA.............................................................................................................................................................................................................................................................................................................................................................................................................................20200.05100000010000000000
droSec2
-----------AAGCGTTTCCGACCGA-ATAAACATTATTTATTCTTGATTAGGATCAATAGCCGAGTCGATCA--AGCCATGTCCGTCTGTCCAA---ACCATTTATTTACCC------------------------CACCCTATCGTG-----------------------------TTGA-------------CTGTTTTTGGCCACTATTC--------ATTTATTTTCTGT----------------------GC-AGCTAG---------------------------------------------------T--------TCGCCAATTGTA------------------------C---------------TTAACCTCTTTAAATTCT----------------------CAGGTGGA-TAGCAGAC-----------GATTGGAGCACTTGCAGCCGCCTTTGTGGTCACGGCTSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...........................................................................................................................................................................................................................................................................................................................................................................................TTAACCTCTTTAAATTCT----------------------CAGGTGGA-........................................................2611.0011000
..............................................TGATTAGGATCAATAGCCGAGTCGAT............................................................................................................................................................................................................................................................................................................................................................................................................................2660.1710010
.......................................................TCAATAGCCGAGTCGATCA--AGCCA...................................................................................................................................................................................................................................................................................................................................................................................................................24200.0511000
dm3
CAGGCAGGGGGAAACGTTTCCGACCAAAATAAAGAATATTTATTTTTGATTAGGATCAATGGCCGAGTCGAACT--GCCCCTGTCCGTCTGTCCTA---ACCATTTATTTTCCC------------------------CACCCTATCGTG---------------TGCCA---------TTGA-------------CTGCTTATGGCCACTATTC--------ATTTATTTTCTGT----------------------GC-AGCTAG---------------------------------------------------T--------TCGCCAATTGTA------------------------C---------------TTAACATCTTTAAATTCT----------------------TAGGTGGA-TAGCAGAC-----------GATTGGAGCACTTGCAGCCGCCTTTGTGGTCACGGCTSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.....................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGGA-TAGCAGAC-----------GATTGG...............................2011.0010000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................CCTATCGTG---------------TGCCA---------TTGA-------------CTGCTTA.........................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAGCACTTGCAGCCGCCTTTGTG.........2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................CAGAC-----------GATTGGAGCACTTGCAGC...................2311.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAGCACTTGCAGCCGCCTT.............2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................TAGCAGAC-----------GATTGGAGCACTT........................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................CTA---ACCATTTATTTTCCG------------------------..........................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAC-----------GATTGGAGCACTTGC......................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................TAGCAGAC-----------GATTGGAGCACTTGCAGCC..................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGGA-TAGCAGAC-----------GATTGGAGCACT.........................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
....................................................................................................................................................................................................................................TTTTCTGT----------------------GC-AGCTAG---------------------------------------------------T--------TCGCCAA......................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................TCT----------------------TAGGTGGA-TAGCAGAC-----------GATTG................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................TCT----------------------TAGGTGGA-TAGCAGAC-----------GATTGGA..............................2611.0010000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................TTCCC------------------------CACCCTATCGTG---------------TGCCA---------TTGA-------------................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................TTTTTGATTAGGATCAATGGCCGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................TCCTA---ACCATTTATTTTT....................................................................................................................................................................................................................................................................................................................................................................................1820.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................AGGATCAATGGCCGAGTCGA.............................................................................................................................................................................................................................................................................................................................................................................................................................2090.2220000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000
droEre2
CAGATAGAAGAAAGCATTTTCGAGCTA-ACAAAGTAGAAATATTCTTGATCAGAATCACTAGGCGAGTTGTTCG--TGCTGAGTACCGGGTATCTG---A------------------------TAGTCCGGAAACTCGACCATCGCGTT-------------------C---------TCTC-------------TTGTTTTTCAT------------------TCAATTTGCTA----------------------CC-TTTGAG---------------------------------------------------T--------GCTCAAATTGCA------------------------A---------------AGCGCGTCATTCGCTTAG----------------------CAGGTGGAATGGCAGGT-----------GCATCGGGTAC--------------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.........................................................................................................................................................................................................................................................................................................................................................................................................TTAG----------------------CAGGTGGAATGGCAGGT-----------GCATCGG..............................2811.0010100000
droYak3
CAGGCAGAAGTAATCGTTTCCGTCCAT-ATAACGTATGTATATTTTTGATCAGGATCAATAGCCGGGTCAATCT--GGCCATATCCGCCTGTCCGT----------------------------CCGTCTGTCCAAAGGAGCC----ACGCCGACACTTTT--------GAAAAATGTT-----------------------TTAATATTTTTTC--------ATTTTT-----------------------------GT--ATTAG---------------------------------------------------T--------CTTTTAACTCTCCTTCGTACTTCCACTAGCAGCTG----------------G----------------------------------------GTAACGGG-TATCATAT-----------AGTCGGGGAACTCGAAACGCAGCTTGTGGTTA-----SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..........................................................ATAGCCGGGTCAATCT--GGCCA...................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000000000
............................ATAACGTATGTATATTTTTGATCAGGATC...........................................................................................................................................................................................................................................................................................................................................................................................................................................2911.00100000010000
....................................................................................................................................................................................................................................................................................................................................................................................................................................TAACGGG-TATCATAT-----------AGTCGGGGAAC..........................26200.05101000000000
...............................................GATCAGGATCAATAGCCGG..................................................................................................................................................................................................................................................................................................................................................................................................................................19200.05101000000000
droEug1
CAGGTAG----AAGAGTTTCCGAACCT-ATAAAGTATATATATTCTTAATCAGTATCAATAGCGATGTCGATTA--AGCAACGTCCGTCTGTCCATATGACATGCTATATGTAATTCGAGCTACA------------------------------------AATGC--------TGCTG-----------------------TTAAAATTTCTTC--------ATTTTTTT---------------------------TT-AGCGAT---------------------------------------------------T--------TCTGAAATTGTA-----------------------A-CT---------------------TTTAACTGTT----------------------AAGG------------------------------------T------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
CGCAGTGAAGGAGACGTTTCCGACCCC-ATAAAGTAAATATATTCTTGATCAGCGTCACTAGATGAGTCGATCT--AGCCATGTCCGTCTGTACGTCCGTCAGCCCGTCTGTCTGT--------CCGTCCGTCTGC------------------------------------------------------------------------------------------------------------CCGTCCGTTTTTACGCAAACTAGTCTCTC-----ACTTCTAGA-------------------------------------------------------------------------------------------GCTATCGGGCTGAAACTTTCCTTAAAATCTTCTTTCTATTTCAGGTAGT-TATAAGTCGGAACCAGCCGGATCGGAGAACTT------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
CGCAGTGAAGGAGACGTTTCCGACCAC-ATAAAGTATATATATTCTTGATCAGGACCAATAGCCGAGTCTATCT--AGCCATGTCCGTCTGTCCGTCTGTCTGTCTGTCCGTCTGTCTGTCCGTC------------------------------------TGTCT--------GT---------------------------------CTGTCC--------GT-------------------CTGTCCGTTTCTATGCGAACTAGTCTCTC-----AGTTTTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
CGCAGTGAAGGAGACGTTTCCGACCCT-ATAAAGTGCATATATTCTTGATCAGCGTCGCTAGGAAAGTCGATCT--AGCCATGTCCGTCTGTCCGT----------------------------CTGTCCGTCTGTCCGTCCG--------------------------------------------------------------------------------------------------------TCCGTTTCTACGAAAACTAGTCTCTC-----AGTTTTAAA-------------------------------------------------------------------------------------------GCTATCTGCATGCAACTTTGCCAAAAGTTGTCTTTCAATTCCAGGTGG----------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
CGCAGTGAAGGAGACATTTCCGACCCT-ATAAAGTATATATATTCTTGATCAGCATCACCAGGAGAGTCGATCT--AGCCATGTCCGTCTGTCCGTCTGTCCGTCCGTCTGTCCGTCCGTCTGTC------------------------------------CGTCC--------GTCTG---------------------------------TCCGTCTGTCCGT-------------------CCGTCCGTTTCTACGC-AACTAGTCCCTC-----AGTTT------------------------------------------------------AA---------------------------------------GCTATCTGCTTG-AACTTTCC-------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
CGCAGTGAAGGAGGCACCTTCGACCCC-ATAAAGTATATATATTCTTGATCAGCATCACGATCTGAGTCGAAAT--CCGTCTGTACGTCTGTCCGT----------------------------CGGTCCGTCTGTCCGTCGG---------------------------------ACCGTCA-------------TTGTTTTTCATCACACGAC--------TATGGTTTTTTGA----------------------GT-ATCAAG---------------------------------------------------T--------TTTTTAACTAGC------------------------C---------------TTGA-----------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
---------GGAGACCTTTCCGACCCA-ATAA--TATATATATTCTTGATCATCATCAACAGCCGAGTCGATCT--AGCCATGTCCGTCTATGCA----------------------------------------------------------------------------------------------------------------------------------------------------------------------AACTAGTCCCTCGACAAAATTTTATAGCTTGGTTGTTTATCAACATTTTTGCTCCATTTTTGAAATATGGCCATTTTA-----------------------------------------TATTATTTTTCAACTTT----------------------CA--TGAA-AAGCGGAC-----------GACT---------------------------------SizeHit CountTotal NormTotal
No Reads
droAna3
CGCAGTGAAGGAGACATCTCCGACCCT-ATAAAGTATAT-------TGATCAGGATCACCTCCTGAGTCGATAT--AAGCATGTCCGTCTGTCCGT----------------------------CTGTCCGTCTGTCCGTCTG----TCCGTCTGTCTGTCTGTCT--------GTCTG---------------------------------TCCGTCTGTCT-------GTCTGTCCGTCTGTCTGTCTGTTTCTACGCAAAGTAGTCTCTC-----AGTTTTAAA-------------------------------------------------------------------------------------------GCTATCGAGTTGAAACTTTGC---------------------------------------------------------------ACACACCCTT------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.............................................................................AGCATGTCCGTCTGTCCGT----------------------------CT......................................................................................................................................................................................................................................................................................................................................................................21200.50101000000
...............................................................TGAGTCGATAT--AAGCATGTCCGTCTG.........................................................................................................................................................................................................................................................................................................................................................................................................26200.459900000
.........................................................................T--AAGCATGTCCGTCTGTCCGT----------------------------C.......................................................................................................................................................................................................................................................................................................................................................................22200.255050000
...................................................................................TCCGTCTGTCCGT----------------------------CTGTCCGTCTG.............................................................................................................................................................................................................................................................................................................................................................24200.255500000
.........................................................................................TGTCCGT----------------------------CTGTCCGTCTGTCC..........................................................................................................................................................................................................................................................................................................................................................21200.153000003
.............................................................................................................................................................................................................................................................................................AA-------------------------------------------------------------------------------------------GCTATCGAGTTGAAACTTTGC---------------------------------------------------------------......................23200.153030000
.......................................................................................................................................................................................................................GTCTGTCT-------GTCTGTCCGTCT..................................................................................................................................................................................................................................................20200.102200000
............................................................TCCTGAGTCGATAT--AAGCATGTCCG.............................................................................................................................................................................................................................................................................................................................................................................................................25200.102200000
...................................................................................................................................................................................................................................................................CAAAGTAGTCTCTC-----AGTTTTAA......................................................................................................................................................................................................22160.061001000
.................................................................................TGTCCGTCTGTCCGT----------------------------CTGTCCG.................................................................................................................................................................................................................................................................................................................................................................22200.051100000
..........................................................................................................................................GTCTG----TCCGTCTGTCTGTCTGTCT--------......................................................................................................................................................................................................................................................................................................................24200.051001000
......................................................................................................................................................GTCTGTCTGTCTGTCT--------GTCTG---------------------------------................................................................................................................................................................................................................................................................................21200.051100000
.........................................................................................................................................................TGTCTGTCTGTCT--------GTCTG---------------------------------TCCG............................................................................................................................................................................................................................................................................22200.051001000
...............................................................................................................................................................................................................................................................TACGCAAAGTAGTCTCTC-----AGT...........................................................................................................................................................................................................21200.051100000
............................................................TCCTGAGTCGATAT--AAGCATGTCCGTCT..........................................................................................................................................................................................................................................................................................................................................................................................................28200.051010000
droBip1
CGCAGTGAAGGAGACATTTCCGACCCT-ATAAAGTATATATATTCTTGATCAGGATCACCTCCTGAGTTGATAT--AAGCATGTCCGTCTGTCCGTCTGTCCGTCTGTCTGTCCGTCTGTCTGTC------------------------------------CGTCT--------GTCTG---------------------------------TCC--------GT-------------------CTGTCTGTTTCTACGCGAACTAGTCTCTC-----AGTTTTAAA-------------------------------------------------------------------------------------------GCTATCGTCTTGAAACTTT---------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dp5
CACCCAGAAGGGAGCGTTTCCGACCCC-ATAAAGTATATATATTCTTGATCAGCATCAATAGCCGAGACGATAT--AGCCATGTCTTTCTT---------------GTTTCTCT------------------------CTTCTTTTCTT------------------------------------------------------------------------------------------------------------TG--AAAAAGTATTTG-----AGA--------------------------------------------------------------------------------------------------ACCTCCTATTTATTTTT---------------------------------------------------------------T------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.............................................TTGATCAGCATCAATAGCCGAGA................................................................................................................................................................................................................................................................................................................................................................................................................................2378.8662052100000000
.............................................................................GCCATGTCTTTCTT---------------GTTTCTCT------------------------C.........................................................................................................................................................................................................................................................................................................................................................2311.0010000000010
.............................................TTGATCAGCATCAATAGCCGAGAC...............................................................................................................................................................................................................................................................................................................................................................................................................................2461.0060240000000
.............................................TTGATCAGCATCAATAGCCGAGACG..............................................................................................................................................................................................................................................................................................................................................................................................................................2560.6740400000000
.............................................TTGATCAGCATCAATAGCCGAGACGA.............................................................................................................................................................................................................................................................................................................................................................................................................................2660.6740100000030
......................................................ATCAATAGCCGAGACGATAT--AGCCAT..................................................................................................................................................................................................................................................................................................................................................................................................................2620.5010000001000
.............................................TTGATCAGCATCAATAGCCGAGACGAT............................................................................................................................................................................................................................................................................................................................................................................................................................2750.4020100001000
.........................................ATTCTTGATCAGCATCAATAG......................................................................................................................................................................................................................................................................................................................................................................................................................................21200.3570700000000
..........................................TTCTTGATCAGCATCAATAGCCGAGA................................................................................................................................................................................................................................................................................................................................................................................................................................2660.3320200000000
..............................................TGATCAGCATCAATAGCCGAGA................................................................................................................................................................................................................................................................................................................................................................................................................................2280.2520200000000
..............................................TGATCAGCATCAATAGCCGAGACGA.............................................................................................................................................................................................................................................................................................................................................................................................................................2560.1710100000000
..............................................TGATCAGCATCAATAGCCGAGACG..............................................................................................................................................................................................................................................................................................................................................................................................................................2460.1710100000000
...........GAGCGTTTCCGACCCC-ATAAAGTA................................................................................................................................................................................................................................................................................................................................................................................................................................................................2460.1710100000000
...........................................TCTTGATCAGCATCAATAGCCGAGA................................................................................................................................................................................................................................................................................................................................................................................................................................2570.1410100000000
........................................TATTCTTGATCAGCATCAATAGCCGA..................................................................................................................................................................................................................................................................................................................................................................................................................................26200.0510000001000
............................................CTTGATCAGCATCAATAGCC....................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0510001000000
................TTTCCGACCCC-ATAAAGTATA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510000000010
droPer2
CGTCCAGAAGGAATCGTTTCCGACCCC-ATAAAGTATATATATTCTTGATCAGCATCAATAGCCGAGTCGATTG--AGCCATGTCA-TCCATCCATGAATCA--------------------------------------TCCTAACTT------------------------AAAAACTTCA-------TTACTGCTGTTTGTGAATATAATTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATTA---------------------------------------------------------------T------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.GTCCAGAAGGAATCGTTTCC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................20201.65330000033
...................................ATATATATTCTTGATCAGCATCAAT........................................................................................................................................................................................................................................................................................................................................................................................................................................25200.051010000
.................................................TCAGCATCAATAGCCGAGTCG..............................................................................................................................................................................................................................................................................................................................................................................................................................21200.051000001
................TTTCCGACCCC-ATAAAGTA................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.051010000
droWil2
CGCATAGAAGGAAGCATCTCCGACCAT-ATAAAGTATATATATTCTTGATCAGCATGACGAGACGAGTTCATAT--AGCCATGTCCGTCCGTCCTT----------------------------CCGTCTGTCCGTCCGTCTG----TCAACAGTGACTTT--------GATCAATATC---------------------------------TTCGTTTTTTC-------CTATGCTAAGATTGTTGGCCGTTCTTTCGCAAG-----------------------------------------------------------------------------------------------------CA-------------TTAGCCTTTTTAGA------------------------------------------------------------------T------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
....................................................................................CCGTCCGTCCTT----------------------------CCGTCTGTC...............................................................................................................................................................................................................................................................................................................................................................2150.20100010
............................................................................................................................................................................................................................................TAAGATTGTTGGCCGTTCTTTCGCAAG-----------------------------------------------------------------------------------------------------........................................................................................................................27140.14200020
..............................................................................................TT----------------------------CCGTCTGTCCGTCCGTCTG----.................................................................................................................................................................................................................................................................................................................................................21100.10101000
.......AAGGAAGCATCTCCGACCAT-A.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.10200020
...................................................................TTCATAT--AGCCATGTCCGTCCGTCC......................................................................................................................................................................................................................................................................................................................................................................................................25200.10200020
........................................................................AT--AGCCATGTCCGTCCGTCCT.....................................................................................................................................................................................................................................................................................................................................................................................................21140.07101000
............................................................................................................................................................................................................................................TAAGATTGTTGGCCGTTCTTTCGCAAG-----------------------------------------------------------------------------------------------------C.......................................................................................................................28140.07101000
...........................................................................................................................................................................................................................................................TTCTTTCGCAAG-----------------------------------------------------------------------------------------------------CA-------------TTAGCCTTTTTAGA------------------------------------------------------------------.........................28180.06101000
................................................................................................................................................................................................................................................ATTGTTGGCCGTTCTTTCG.................................................................................................................................................................................................................................19200.05100001
..................................TATATATATTCTTGATCAGCATGACG........................................................................................................................................................................................................................................................................................................................................................................................................................................26200.05110000
....................................................................................................................................................................................................................................................TTGGCCGTTCTTTCGCAAG-----------------------------------------------------------------------------------------------------CA-------------.........................................................................................................21200.05101000
...............................................GATCAGCATGACGAGACGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................20200.05100100
.............................................................................................................................................................................................................................TC-------CTATGCTAAGATTGTTGGCC..........................................................................................................................................................................................................................................22200.05100010
.................................................TCAGCATGACGAGACGAGTTC..............................................................................................................................................................................................................................................................................................................................................................................................................................21200.05100100
droVir3
CAGGCAGAAGGAAGCATCTCCGACCCC-ATAAAGTATATTTATTCTTGATCAGCATCAATAGCCGAGTCGATCT--AGCCATGTCCGACTTTCTGT----------------------------CCGTCCGTCCGTCCGTCCGTATGGTT-------------------A---------TT------------------------GCGAC-----------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTTCTGTAATGCTATT-----------------TAAGTTTTTTTTTTA-------------------------------------------T------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
........................................TATTCTTGATCAGCATCAATAGCC....................................................................................................................................................................................................................................................................................................................................................................................................................................24200.306000040000000000000000000000000000000000200000000000000000000000
............................................CTTGATCAGCATCAATAGCCGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................23200.255000000000000000000000000000050000000000000000000000000000000000
....CAGAAGGAAGCATCTCCGACC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.153000000000000000000000000001000200000000000000000000000000000000
................................................................GAGTCGATCT--AGCCATGTCCGA............................................................................................................................................................................................................................................................................................................................................................................................................22160.132000000000000000000000000000011000000000000000000000000000000000
...........................................TCTTGATCAGCATCAATAGCCGAGTC...............................................................................................................................................................................................................................................................................................................................................................................................................................26200.102000000000000000000000000000002000000000000000000000000000000000
.............................................TTGATCAGCATCAATAGCCGAGT................................................................................................................................................................................................................................................................................................................................................................................................................................23200.102002000000000000000000000000000000000000000000000000000000000000
...........................................TCTTGATCAGCATCAATAGCCG...................................................................................................................................................................................................................................................................................................................................................................................................................................22200.102000000000000000000000000000000000000000200000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................TTTTCTGTAATGCTATT-----------------TAAG...............................................................................21200.102001000000000000000000000000100000000000000000000000000000000000
...........................................................TAGCCGAGTCGATCT--AGCCA...................................................................................................................................................................................................................................................................................................................................................................................................................20200.102000002000000000000000000000000000000000000000000000000000000000
...........................................................................................TCTGT----------------------------CCGTCCGTCCGTCCGTCCGTA...................................................................................................................................................................................................................................................................................................................................................26200.102000000000000000000000000000000000000000000000000000000000000002
...............................................................................................................................................................................................................................................................................................................................................................................TTTTCTGTAATGCTATT-----------------TAAGTT.............................................................................23200.102001000000000000000000000000100000000000000000000000000000000000
.............................................................GCCGAGTCGATCT--AGCCATGTCC..............................................................................................................................................................................................................................................................................................................................................................................................................23200.102000000000000000000000000000020000000000000000000000000000000000
.............................................................GCCGAGTCGATCT--AGCCATGTCCGAC...........................................................................................................................................................................................................................................................................................................................................................................................................26120.081000000000000000000000000000100000000000000000000000000000000000
..................................................................GTCGATCT--AGCCATGTCCGA............................................................................................................................................................................................................................................................................................................................................................................................................20170.061000000000000000000000000000000000000000100000000000000000000000
.................................................TCAGCATCAATAGCCGAGTCGA.............................................................................................................................................................................................................................................................................................................................................................................................................................22200.051000000000000000000000000000000010000000000000000000000000000000
............................................CTTGATCAGCATCAATAGCCG...................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051001000000000000000000000000000000000000000000000000000000000000
..GGCAGAAGGAAGCATCTCC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.051000000000000000000000000000000000000000100000000000000000000000
.............GCATCTCCGACCCC-ATAAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.051000100000000000000000000000000000000000000000000000000000000000
...............................................GATCAGCATCAATAGCCGAGT................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051000000000000000000010000000000000000000000000000000000000000000
...........................................................TAGCCGAGTCGATCT--AGCCATG.................................................................................................................................................................................................................................................................................................................................................................................................................22200.051000000000000000000001000000000000000000000000000000000000000000
.............................................................GCCGAGTCGATCT--AGCCAT..................................................................................................................................................................................................................................................................................................................................................................................................................19200.051000000000000000000001000000000000000000000000000000000000000000
......................................TTTATTCTTGATCAGCATCAATAG......................................................................................................................................................................................................................................................................................................................................................................................................................................24200.051000000000000000000000000010000000000000000000000000000000000000
...........................................TCTTGATCAGCATCAATAGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051000000000000000000000000000010000000000000000000000000000000000
............................................CTTGATCAGCATCAATAGCCGAGTC...............................................................................................................................................................................................................................................................................................................................................................................................................................25200.051000000000000000000000000000000010000000000000000000000000000000
.............................................................................................TGT----------------------------CCGTCCGTCCGTCCGTCCGTATG.................................................................................................................................................................................................................................................................................................................................................26200.051000000000000000000000000001000000000000000000000000000000000000
.....AGAAGGAAGCATCTCCGACCC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051000000100000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................TTTTCTGTAATGCTATT-----------------TA.................................................................................19200.051000000000000000000000000001000000000000000000000000000000000000
...........................................................TAGCCGAGTCGATCT--AGCCATGTCCG.............................................................................................................................................................................................................................................................................................................................................................................................................26200.051000000000000000000000000000000010000000000000000000000000000000
...GCAGAAGGAAGCATCTCCGACC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051000100000000000000000000000000000000000000000000000000000000000
.AGGCAGAAGGAAGCATCTCCGACC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.051000100000000000000000000000000000000000000000000000000000000000
.............................................TTGATCAGCATCAATAGCCGAGTCGAT............................................................................................................................................................................................................................................................................................................................................................................................................................27200.051001000000000000000000000000000000000000000000000000000000000000
..........................................................ATAGCCGAGTCGATCT--AGCCATGTCC..............................................................................................................................................................................................................................................................................................................................................................................................................26200.051000000000000000000000000000000000001000000000000000000000000000
...........................................TCTTGATCAGCATCAATAGCCGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................24200.051000000000000000000000000000100000000000000000000000000000000000
.AGGCAGAAGGAAGCATCTCCGACCC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.051000000000000000000000000000000000001000000000000000000000000000
droMoj3
GGC--AGAAGGAGGCGTGGCAGACCCC-ACAAAGTATATATATTCTTGATCAGGGCGACGAGCGGAGTCGATTT--GGCCCTGTCCGTCTGTCTGT----------------------------CCGTCCGTCCGTCCGTCCGTATGTA--------TG--AACGCGTCG---------ATAACTACTCC------CGATATTTTATTATCGATC--------AAAAACCTTATCG----------------------AA-AGCTAG---------------------------------------------------T--------TATTTAATTATA-----------------------T-CT-------------CTTACACCTTTAGA-------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..........................................TTCTTGATCAGGGCGACGAGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................21202.15434300000
.........................................................................................................................................................................................................................................TCG----------------------AA-AGCTAG---------------------------------------------------T--------TATTTAATTATA-----------------------T-C.......................................................................................................................26201.05210000210
...............................................................................................................................................TATGTA--------TG--AACGCGTCG---------ATAACTA..........................................................................................................................................................................................................................................................................................................2411.001000010
.......................................................................................................................................................................TCG---------ATAACTACTCC------CGATATTTTATTA...................................................................................................................................................................................................................................................................................27200.153300000
...........................................................................................................................................TCCGTATGTA--------TG--AACGCGTCG---------ATA..............................................................................................................................................................................................................................................................................................................2480.131100000
..............................................................CGGAGTCGATTT--GGCCCTGTCCGTC...........................................................................................................................................................................................................................................................................................................................................................................................................25190.112000020
.................................................TCAGGGCGACGAGCGGAGTCGATTT--GG......................................................................................................................................................................................................................................................................................................................................................................................................................27150.071100000
........................................................GACGAGCGGAGTCGATTT--GGCCCTG.................................................................................................................................................................................................................................................................................................................................................................................................................25160.061100000
......................................................GCGACGAGCGGAGTCGATTT--GGCC....................................................................................................................................................................................................................................................................................................................................................................................................................24170.061000010
.............................................TTGATCAGGGCGACGAGCGGAGTCGA.............................................................................................................................................................................................................................................................................................................................................................................................................................26180.061100000
...........................................................................................................................................................................................................................................G----------------------AA-AGCTAG---------------------------------------------------T--------TATTTAATTATA-----------------------T-CT-------------.........................................................................................................25200.051000010
.........................................................................................TGTCTGT----------------------------CCGTCCGTCCGTCC..........................................................................................................................................................................................................................................................................................................................................................21200.051000001
...................................ATATATATTCTTGATCAGGGC............................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051000001
...........................................................................................................................................................................................................TTATTATCGATC--------AAAAACCT.............................................................................................................................................................................................................................................................20200.051100000
...................................................................................................................................................................................................................................................................A-AGCTAG---------------------------------------------------T--------TATTTAATTATA-----------------------T-CT-------------CTC......................................................................................................26200.051100000
............................................................................................................................................................................................................TATTATCGATC--------AAAAACCTTA...........................................................................................................................................................................................................................................................21200.051000001
..........................................................................................................................................................................................................................................CG----------------------AA-AGCTAG---------------------------------------------------T--------TATTTAATTATA-----------------------T-CT-------------.........................................................................................................26200.051100000
......................................................................................................................................................................................................................C--------AAAAACCTTATCG----------------------AA-AGCTAG---------------------------------------------------T--------TATT.........................................................................................................................................................27200.051000010
droGri2
TAGGCAGAAAGAAGCATTTCTACCCTC-AAAAAGTATATATTTTTTTGCTCAGGAGCAACAGCTGAGTCGATATACAGCTATGTCAGTCCTTCTGT----------------------------TTGCCTGTATGC---------------------------------------------AA-------------TTATTTT-------------------------------------------------------A--CATAAGTCTGGC-----AATGTTTAA-------------------------------------------------------------------------------------------TGAATTTT-ATTTACTGTA----------------------CATT------------------------------------T------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 05:19 PM