ID:

dsi_15922

 Coordinate:

2l:1528971-1529223 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-34.4 -34.4 -34.4

Flybase annnotation

exon [2l_1529207_1529707_-]; CDS [2l_1529207_1529707_-]

No Repeatable elements found

Sense Strand Reads

###################################################################----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
GGCCATTGTAACCGGGGAGAAGCTGAGACTTTGTGGAGCGTTTACAGAAAGTACGGCGTTTGTTTAAGTCAAAACATATAAAGTAGTTAAGTTATATAAATCTAATCAAATTAGACATTCTCACAATTATAAAAAGCAGAATAGATGAAATGGGCATGCATTTTCATCTTGTAACTCTACACAAAATATTATATTTTAGTAATAATCATGCTACTCAAATTGGTGTTATTGGTGCTATGTAAAGAAATAAACGTACAGAAAATCAAGCACATTGTTGAACAACATTTCCTACCAATCTCTTAGCTCCATCTTTTCAGGGAATTGCCCTCTGAGATCTTGGCCTCATATAATCA
**************************************************(((((..((((.(((((((((((((((....((((((...(((((.....((((((...)))))).(((((................)))))((((((((((......)).))))))))((((....)))).....(((((.....))))))))))...)))))).......))))).)))..)))...)))).))))...)))))......((((........)))).........................************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 SRR553485
Chicharo_3 day-old ovaries
 GSM343915
embryo
 SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR902009
testis
 SRR553487
NRT_0-2 hours eggs
.....................GCTGAGACTTTGTGGAGC.......................................................................................................................................................................................................................................................................................................................... 18 0 1 2.00 2 2 0 0 0 0 0 0 0
............................CTTTGTGGAGCGTTTACAGA................................................................................................................................................................................................................................................................................................................. 20 0 1 1.00 1 0 1 0 0 0 0 0 0
...........................................................................................................................................AATAGATGAAATGGGCATGC.................................................................................................................................................................................................. 20 0 1 1.00 1 0 0 1 0 0 0 0 0
......................................................................................................................................................................................................................................................................................................................................ATCTGAGCGCTTGGCCTCAT....... 20 3 4 0.25 1 0 0 0 1 0 0 0 0
...............................................................................................................................................................................................................................................................................................................................AATTCCCCTCTGAGA................... 15 1 4 0.25 1 0 0 0 0 0 1 0 0
..CAATTGTAACCGGACAGAAG........................................................................................................................................................................................................................................................................................................................................... 20 3 9 0.22 2 0 0 0 0 0 0 2 0
................................................................GAAGTCAAAACGTATAAAGGA............................................................................................................................................................................................................................................................................ 21 3 5 0.20 1 0 0 0 0 1 0 0 0
...............................................................................................................................TATAAAAATAAGAATAGATTAAAT.......................................................................................................................................................................................................... 24 3 5 0.20 1 0 0 0 0 0 0 0 1
......................................................GGCGGTTTTTTAAGTCAGA........................................................................................................................................................................................................................................................................................ 19 3 20 0.10 2 0 0 0 2 0 0 0 0
........................................................................................................................................................................................................................................TGCTATGTAGAGAAAAAA....................................................................................................... 18 2 11 0.09 1 0 0 0 0 1 0 0 0
...............................................................CTAAGTCAAAACATA................................................................................................................................................................................................................................................................................... 15 1 17 0.06 1 0 1 0 0 0 0 0 0
...........CCGGTGATAAGCTGAGA..................................................................................................................................................................................................................................................................................................................................... 17 2 17 0.06 1 0 0 0 0 1 0 0 0
.......................................................................................................................................................................................................................................................................................................................................GCTGAGCGCTTGGCCTCAT....... 19 3 17 0.06 1 0 0 0 1 0 0 0 0
.........................................................................................................................................................................TAGAACTCTACACAAAA....................................................................................................................................................................... 17 2 20 0.05 1 0 0 0 1 0 0 0 0
......................................................GGCGGTTTTTTAAGTCA.......................................................................................................................................................................................................................................................................................... 17 2 20 0.05 1 0 0 0 1 0 0 0 0

Anti-sense strand reads

CCGGTAACATTGGCCCCTCTTCGACTCTGAAACACCTCGCAAATGTCTTTCATGCCGCAAACAAATTCAGTTTTGTATATTTCATCAATTCAATATATTTAGATTAGTTTAATCTGTAAGAGTGTTAATATTTTTCGTCTTATCTACTTTACCCGTACGTAAAAGTAGAACATTGAGATGTGTTTTATAATATAAAATCATTATTAGTACGATGAGTTTAACCACAATAACCACGATACATTTCTTTATTTGCATGTCTTTTAGTTCGTGTAACAACTTGTTGTAAAGGATGGTTAGAGAATCGAGGTAGAAAAGTCCCTTAACGGGAGACTCTAGAACCGGAGTATATTAGT
**************************************************(((((..((((.(((((((((((((((....((((((...(((((.....((((((...)))))).(((((................)))))((((((((((......)).))))))))((((....)))).....(((((.....))))))))))...)))))).......))))).)))..)))...)))).))))...)))))......((((........)))).........................************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
...........................................................................................................................................................................................................................................................GCATGACTTTTAGTTC...................................................................................... 16 1 3 0.67 2 1 1 0 0 0
............................................GTCTTTCAGGCCGCA...................................................................................................................................................................................................................................................................................................... 15 1 10 0.50 5 5 0 0 0 0
............................................................................................................................................................................................................................................................................................AGAGGATGGTTAGCGAAT................................................... 18 2 4 0.25 1 1 0 0 0 0
.........................................................................................................AGTTTCATCTGTGAGAGT...................................................................................................................................................................................................................................... 18 2 4 0.25 1 0 0 1 0 0
.................................ACCTCGCAAGTCTCTCTCAT............................................................................................................................................................................................................................................................................................................ 20 3 5 0.20 1 0 1 0 0 0
.............................................TCTTTCAGGCCGCACACAA................................................................................................................................................................................................................................................................................................. 19 2 6 0.17 1 0 0 1 0 0
.....................................................................................................................................................................................................................................ACCACGATAAATTTC............................................................................................................. 15 1 15 0.13 2 0 1 0 1 0
.CGTTAACATTGGCCTGTCTT............................................................................................................................................................................................................................................................................................................................................ 20 3 9 0.11 1 0 0 0 1 0
.................................ACCTCGGAAGTCTCTTTCA............................................................................................................................................................................................................................................................................................................. 19 3 20 0.10 2 2 0 0 0 0
.....AACGTTGGCCCCTCTC............................................................................................................................................................................................................................................................................................................................................ 16 2 20 0.05 1 0 0 1 0 0
....................................................................AGTTTTGTATATTTCT............................................................................................................................................................................................................................................................................. 16 1 20 0.05 1 0 0 0 0 1
............................................................................................................................................................................................................................................................................................AAAGGATCGATAGAGAA.................................................... 17 2 20 0.05 1 0 0 1 0 0
..........................................................AAAAAGATTCAGTTTTGT..................................................................................................................................................................................................................................................................................... 18 2 20 0.05 1 1 0 0 0 0
..............................................CTTTCATGCCGCAGCC................................................................................................................................................................................................................................................................................................... 16 2 20 0.05 1 1 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2l:1528921-1529273 - dsi_15922 GGCCATTGTAACCGGGGAGAAGCTGAGACTTTGTGGAGCGTTTACAGAAAGTACGGCGTTTGTTTAAG--------------------------------TCA---A-------------------------------------------------------------------------AACATATAAAGTAGTTAAGTTATA-TAAATCTAATCAAATTAGACAT-------------------------------------------------------------------TC----------------------------------------TCACAATTATAAAAA-GCAGAA------------------TAGATGAAAT-------------------------------GGGCATGCATTTTCATCTTGTAA-CTCTACACA-------------------------------------------AA--------------------------------------------A----------TAT-----TATATTTT--------AGTAATAAT------------CATGCTACTC-AAATTGGTGTTATTGGTGCTATGTAAAGA------AATAAACGT-A-C-AG-AAAATCAAGCACATTGTTGAACAACA-TTTCCTA------CCAATCTCTTAGC-TCCATCT------------T-TTC-AGGGAATTGCCCTC-TGAGA-TCTTG-GCCT--CATATAATCA
droSec2 scaffold_14:1537838-1538190 - GGCCATTGTAACCGGGGAGAAGCTGAGACTTTGTGGAGCGTTTACAGAAAGTACGGCGTTTGTCTAAG--------------------------------TCA---A-------------------------------------------------------------------------AACATATAAAGTAGTTAAGTTATA-TAAATCTAATCAAATTAGACAT-------------------------------------------------------------------TC----------------------------------------TCACAATTATAAAAA-GCAGAA------------------TAGATGGAAT-------------------------------GGGCATGCATTTTCATCTTGTAA-CTCCACACA-------------------------------------------AA--------------------------------------------A----------TAT-----TATATTAT--------AGTAATAAT------------CATGCTACTC-AAATTGGTGTTATTGGTGCTATGTAAAGG------AATAAACGT-A-C-AG-AAAATCCAGCACAATGTGGAACAACA-TTTCCTA------CCAATCTCTTAGC-TCCATCT------------T-TTC-AGGGAATTGACCTC-TGAGA-TCTTG-GCCT--CATATAATCA
dm3 chr2L:1594722-1595109 - GGCCATTGTAACCGGGGAGAAGCTGAGACTTTGTGGAGCGTTTACAGAAAGTACGGCGTTTGTCTAAG--------------------------------TCA---AG-TGT---------------------------------------------------------------ACCAAAACATAAA-AGTAGATAAGTTATT-TAAATCAAATCAAATTAGAAATCC------------------------------------------------------AACAGAGATCTTC----------------------------------------TCACAATTATAAACA-GCAGAA------------------TAGATGGAATGGATT----------------------------GCATGCATTTCTATCTTGTAT-CTCCACACA-------------------------------------------AA--------------------------------------------A----------TAT-----TTTATTAT--------AGTAATAAT------------CATGCTACTC-AAATTGGTGTTATTGGTGCTATGCACAGT------AATAAACGT-A-C-AG-AAAATCAACCACATTGTGGAACAACA-TTTCCTA------CCAATCTTTTAGC-TCCATCTTTC--CCGCTCGTTTTC-AGGGAATTGCCCTC-TGAGA-TCTTG-GCCT--CATATAATCA
droEre2 scaffold_4929:1640886-1641280 - GGCTATTGTAACCGGGGAGAAGCTGAGACTTTGTGGAGCGTTTACAGAAAGTACGGCGTTCGTCTAAG--------------------------------ACA---AA-TGTT----------------------------------------GTA-G-CT--------------ATCTAAACATATATGCTAGTTAAGTTATA-CAAAACTAATCAAATTAGACATCA------------------------------------------------------AAAATAGATCTTC----------------------------------------ACACAATTATAATAATTCAGAA------------------TAGCTGGAAT-------------------------------GACCATGCATTTTCGTCTTGTAA-CTCCACACA-------------------------------------------AA--------------------------------------------A----------TAT-----TATCTTAT--------AGTAATAAT------------CATGCTACTC-AAATTGGTGTTATTGGTGCTATGTAAGGA------AATAAAAGT-A-C-AGTAGAATCAACTACATTGTGAAACACCA-TTTCCTA------CCAATCTCTTAGC-TCCGTCTTGC--TCCATCGTTTTC-AGGGAATTGCCCTC-TGAGA-TCTTG-GCCT--CATATAATCA
droYak3 2L:1567921-1568248 - GGCCATTGTGACCGGGGAGAAACTGAGACTTTGTGGAGCGTTTACAGAAAGTACGGCGTTTGTCTAAG--------------------------------ACA---AA-TGTT----------------------------------------TTA-T-CC--------------ATCTAATCATATA---TAGTTAAGTTATA-TAAAACTAATCAAATTAGACATCC------------------------------------------------------AAA---------C----------------------------------------ATACAGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATAATAATTCATAATTCATATAAT------------CATGCTACTC-AAAATGGTGTTATTGGTGCTATGTAAAGA------AATAAAAGT-A-C-AGTAGAAGCAACTACATTGTGGAACAACA-TTTCGTA------CCAATCTTTTAGC-TACATCTTGC--CCCATCGTTTTC-GGGGAATTGCCCTC-CGAGA-TCTTG-GCCT--CATATAATCA
droEug1 scf7180000407252:198062-198541 + GGCCATTGTTACGGGCGAGAAACTGAGACTATGTGGAGCTTTCACAGAGAGCACGGCTTTTGTCTAAG--------------------------------ACA---AG-TTTT----------------------------------------GT-TTT-T---------------TGTAAGGAAAT-----------ACTTTA--AAAATTAATCAATTTGGAAAAGCTAAGCATGACATA----A----------TCTAC------ATGTAAAA---------G-AAGAACTTAATAGAAGGTCTTAGAAATG---AGCCTGTAAGAAAGCA--A---------------------GAAAAAAGTAAATGGAAAAAGCTGGGAA-------------------------------AGACATGCATTTCCTTCTTGAAA-TTCCGCATA-------------------------------------------AACACTA-AAAAGTCTTGTAGAGTCAA---------AG--------TTATTATAAAAGTA-----TATAAAAATCGATTATAT---ATAT------------TATGCTACTC-AAATTGGTGTTATTGGTGCTTTAAAAATAA-----AATAAAAAT-T-C-ATAATAATCAAAGAAATTCCAGAATAACAACTTCCTT------ACAATCTTTTAGC-TTCATCT--C--CTTATTGTTTCG-AGGGAATTGCCCTG-TAAGA-TCTGAGGTCT--CATATAATCA
droBia1 scf7180000302188:224281-224773 + GGCCATTGTCACGGGCGAGAAACTGAGACTTTGTGGAGCCTTCACAGAAAGTACAGCTTTTGTCTAAG--------------------------------ACTTATAGATTTT----------------------------------------TTA-------------------GTATAAATA--TTTAATAGT-AAGCTATA--AAAACTAATCAAATTAGAAGAGCAAAGCAGGACATA----A----------TAT-T------ATTTAAAA---------C-ATAAGCTTCATAGAAGACTTTCAGAATA---AAACTATAACCTA-C------------AAAAAT-TAA------AAATCAA----------AACGTAAAGGAACGCATGTTAGCTTGATTAACCTGGAATA---ACGCATTTGCTTCTCGAAA-TTCCACACA-------------------------------------------GA-AAATGAAATTA--------TACA------CAACCGTTTTTAAAA----------TAT-----TATTTTAATCAATAAC-----TTAT------------TATGCTACTA-GAATTGGTGTTATTGGTGCTACAGAAAGAA-----AATAAAAAT-A-T-T-TTTAATCAACTACATTGCAGT-----------CTT------CCAATCTTCTGGCCTTCATCTTCC--CTCATCATTTTCTTGGGAATCGCCCTC-TGAGA-TCTTGGGGCA--CATATAATCA
droTak1 scf7180000412385:44417-44868 - GGCCATTGTCACGGGCGAGAAACTGAGACTTTGCGGAGCTTTTACAGAAAGTACTGCTTTTGTTTAAAAAA------------------------------TA---AA-ACTT----------------------------------------TTA-------------------------ATA--TT---TAGTA-AACTATAAGAAAACTAATTAAATTAGAAAAGCAAAGCAGGACATACATAA----------ATTGT------AACCAAAA---------T-AGGAACTTCATAGAAGATTT---------------------------AA----------------------GAAAAATCAAAATGGAATTAGCTGGAAA-------------------------------AGACATGCATTTGCTTCTTGTAA-TTCCACACA-------------------------------------------GA-AATGAAAACTA--------TATAA--------ACATT--------TTTAAAAAATAT-----TATTAAAATCAATTAT-----TTAT------------TATGCTACTC-AAATTGGTGTTATTGGTGCTATAGAAAGAAAAATAAATATAAAT-AAT--ATATAATCAACTATGTTCTGGGGAAACA-TTTCCTT------ACAATCTTTCAGC-TTCGTCT----------CATTTTCCGGAGAATCGCCCTC-CGAGA-TCTTGGGCCA--CATATAATCA
droEle1 scf7180000491273:1795157-1795335 + ACTTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA--------------------------------------------ATATTATATAATAA-----TATAAGTATAAATAAT-----TTAT------------TATACTACTC-AAATTGGTGTTATTGGTGCTATAAAAATAA-----AATATAAATAA-CAATTTTAATCAACAATATTTTAGAACAACC--------------------TTTT-----------TCT--CAAATCATTTTT---GGAGTAGACCCC-TGAGA-TCTTGGGCCA--CAAATAATCA
droRho1 scf7180000779663:11272-11706 - GGCCATTGTCACCGGCGAGAAACTGAGACTTTGTGGAGCTTTTACCGAAAGTACAGCTTTTGTTTAAGAATGG---GAAACTATTGTGTAAGTGATA---------AA-TGTTATCTTTTAACGGA-----------------------------------------------------------------------------------TTTAATCA---TTGAAGAGCAAATCAGGACAAGAATAATGCTTAGTAAACTGAACGATGAATCAAAA---------T-AGAAAC-CA----------------------------------------TTACGGTTTTGA---------------------ATAGAACTATTTGGAAA-------------------------------AGACATGCATTTGCTTCTTAAAA-CTCCAGGCA-------------------------------------------GC-ACAA-AAAATA--------TTTAA-------------------ATATTATAAAATAA-----TATTAGAATGAATAAT-----TTAT------------TATGCTACTC-AAATTGGTGTTATTGGTGCTATATAAAGAA-----AATAAAAAATA-C-A-TATATTCAAATACATTTATGAACATCC-TTTCTA---------------------------------GTTAACGTTTTT-GGAGAATCAACCTC-GGAGA-TCTTGGGCCA--CATATAATCA
droFic1 scf7180000453949:566735-567185 + GGCCATTGTCACGGGCGAGAAACTGAGACTCTGTGGAGCTTTTACGGAGAGCACGGCTTTTGTCTAAAGATAC---CATACAAACTT----------ACT---TCAAGATTTT----------------------------------------GT-ACT-TCATATAAATCATTC-----AGTA--T------AT-GAACTAAA--ACAAGAACTTAAATTATTTGAGCAAACCAGGACTTTC----------------------------------------AACAGAAAACTTCATAGAAGTAATTT-GAATAACAA-------ACCTA-C------------TTAACT-GAAAAA------------------AAACTGAAAA-------------------------------GGAATTGCATTTGCTTCCCAATGTTTCCATACA-------------------------------------------GC-ACAA-AAAA----------TTTAA-------------------ATATTACAAAATAA--C--TATAAG------------------------------------------TAATCGGTGTTATTGGTGCTACATAAACGA-----ATTAAAACA-A-C-ACTTTAATCAACCAAATTCCGTAACCACC-TTTCTGT------AGAGTCTTTTAGC-TTCATCTCCT--CGCATCGTTT-T-GGGGAATCGCCCTG-CGAGA-TCTGGGGCCA--CATATAATCA
droKik1 scf7180000302643:952053-952412 + AGCCATTGTCACGGGCGAGAAGCTAAGGCTTTGTGGGGCTTTCACAGAGAGTACAGCCTTTGTTTAGGAACATAAT----TTAAC--------------------------------------GGATTCCCAGACAAAATGAGAGATCTT---TG-AC-----------------------------------------------------------------------------------------------------TAC------ATTTAAAGGATTCTATAGAAAAATCTTCATAGAAGTTTTTAAGTA------------------------------------------AAA------------------AAGTTTAAGT---------------------GTTCT-----AGAAAAGCATTTGCTTCTCGAAA-TTCCACA------------------------------------------------------------------ATTTGAAT--------------------TTATAAAATATAAACATATGATATTGAATA--------ACT------------TATGCAACTT-AAATTGGTGTTATTGGTGCTACATATTTA--TACAAATAAAACT-A-A-ATTATAACCAACAACATTT-GGTA------TTTCT-T-------GGAACTTTCAAC-TC--------------------------------------------------CCCT--CATATAGCCA
droAna3 scaffold_12916:14994974-14995239 - AGCCATTGTTACTGGCGAAAAGTTGAGACTCTGTGGGGCATTTACTGAAAGTACAGCCTTTCTTTAAAGAGAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT----------------------------------------T-----------------------------------------------------------------------------------------------------------------AACTCAGCGCAAAATA--ATCTGAA-ATATATATTACTCTATA---------------------ATCTGTATATCTAA-----T-----A----------TAC-----TCCACTTT--------AATAAT---------------------ATAC-TGTTTGGTGACATAGGTGCTTTATCATTT------TATAAAAAT-A-A-AATATAAAA-------------AA----------------------------CACT-ACA----TAC--TCTAACAAGTAA-CTGGAACATCTTTT-GGAGA-TGTTG-GCCAAAAATTTAATCA
droBip1 scf7180000396572:2012520-2012775 + GGCCATCGTAACTGGCGAAAAGTTGAGACTTTGTGGGGCATTTACTGAAAGTACAGCCTTTCTTTAAAGATAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TC----------------------------------------TA-----------------------------------------------------------------------------------------------------------------AA--AGCGCAAAAAAATATCTGAA-ATATATATTACTATATA---------------------ATCTGTATATCTAA---------------------------------------------T-----A---------------TACTCTACTCTTAATTGGTGTCATAGGTGCTATATAATTAT--A--AATAAAACA-A-A-ATTTAAA---------------AA----------------------------CAGT-ACA----TAC--TCCAGCAT-TAC-AGTGAAATACCTTCTGGTGA-TGTTG-GTCTAAAATTTAATCA
dp5 4_group3:10194650-10194985 - GGCCATTGTCACGGGGGAAAAGCTAAGACTCTGTGGCGCATTCACGGAGAGCACAGCCTTTGTTTAGGGAGAAAAA----CTACA--------------------------------------GGAATTCCAGG---AATGA--------CTG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA----------------------GAAGG---------------------------------------------------------AT--------------------------T-AAATCTAAAGAAATTA--ATATGAATATGAATGTTATTCCACA---------------------ATACG------CAAGACTATTTAAAC----------TAT-----TATATTA-------------ATA--TGTACTTCCATT----------GTTTTTGGTTTTATTTGTGCTTTAAAT-AA--TA--CACACAAAG-A-A-ATTAT------------TA-AGTA------TTCCTGTCGGGGCACAAACTTTCAGC-GTCT-CCCGCCGCAAAACAG-TTA-AAGGAACTGCACTC-TGGGA-TCTGCAGCCA--CATATAATCA
droPer2 scaffold_8:1399452-1399793 - GGCCATTGTCACGGGGGAAAAGCTAAGACTCTGTGGCGCATTCACGGAGAGCACAGCCTTTGTTTAGGGAGGAAA-----CTACA--------------------------------------GGAATTCCAGG---AATGA--------CTG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA----------------------GAAGG---------------------------------------------------------AT--------------------------T-AAATCTAAAGAAATTA--ATATGAATATGAATGTTATTCCACA---------------------ATACGCATACGCAAGACTATTTAAAC----------TAT-----TATATTA-------------ATA--TGTACTTCCATT----------GTTCTTGGTTTTATTGGTGCTTTAAAT-AA--TA--CACACAAAG-A-A-ATTAT------------TA-AGTA------TTCCTGTCGGGGCACAAACTTTCAGC-GTC-TCTCGCCGCAAAACAG-TTA-AAGGAACTGCACTC-TGGGAATCTGCAGCCA--CATATAATCA
droWil2 scf2_1100000004521:3398645-3398756 - AGCCATAGTTACGGGAGAGAAATTGAGATTGTGTGGTGCATTCACAGAGAGCACAACATTTGTTTAAC--------------------------------ACT---T-------------------------------------------------------------------------AATATTTATA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACTAAAATG-TGACAA------TTTA--CATATATATA
droVir3 scaffold_12963:16798571-16798636 + AGCGATTGTTACGGGCGACAAGCTAAGACTCTGTGGCGCCTTCACGGAGAGCACAACCTTTGTTTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3 scaffold_6500:3210571-3210639 + CGCAATTGTCACGGGCGAGAAGCTCAGACTCTGTGGAGCATTCACTGAGAGCACAGTATTTGTCTAGGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2 scaffold_15252:10742928-10743027 - AGCCATTATCACTGGCGACAAGTTGAGACTTTGTGGTGCTTTCACAGAGAGCACGACTTTTGTTTAGAGA----------------------------------------------------------------------------------------------------------------CATATA-ATAATATAATATATA-TATATCTGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
GGCCATTGTAACCGGGGAGAAGCTGAGACTTTGTGGAGCGTTTACAGAAAGTACGGCGTTTGTTTAAG--------------------------------TCA---A-------------------------------------------------------------------------AACATATAAAGTAGTTAAGTTATA-TAAATCTAATCAAATTAGACAT-------------------------------------------------------------------TC----------------------------------------TCACAATTATAAAAA-GCAGAA------------------TAGATGAAAT-------------------------------GGGCATGCATTTTCATCTTGTAA-CTCTACACA-------------------------------------------AA--------------------------------------------A----------TAT-----TATATTTT--------AGTAATAAT------------CATGCTACTC-AAATTGGTGTTATTGGTGCTATGTAAAGA------AATAAACGT-A-C-AG-AAAATCAAGCACATTGTTGAACAACA-TTTCCTA------CCAATCTCTTAGC-TCCATCT------------T-TTC-AGGGAATTGCCCTC-TGAGA-TCTTG-GCCT--CATATAATCASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.....................GCTGAGACTTTGTGGAGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.00202000000000000000
............................CTTTGTGGAGCGTTTACAGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000010000000000
....................................................................................................................................................................................................................................................................................................................................................................AA------------------TAGATGAAAT-------------------------------GGGCATGC...................................................................................................................................................................................................................................................................................................................................................................2011.00100000000000100000
droSec2
GGCCATTGTAACCGGGGAGAAGCTGAGACTTTGTGGAGCGTTTACAGAAAGTACGGCGTTTGTCTAAG--------------------------------TCA---A-------------------------------------------------------------------------AACATATAAAGTAGTTAAGTTATA-TAAATCTAATCAAATTAGACAT-------------------------------------------------------------------TC----------------------------------------TCACAATTATAAAAA-GCAGAA------------------TAGATGGAAT-------------------------------GGGCATGCATTTTCATCTTGTAA-CTCCACACA-------------------------------------------AA--------------------------------------------A----------TAT-----TATATTAT--------AGTAATAAT------------CATGCTACTC-AAATTGGTGTTATTGGTGCTATGTAAAGG------AATAAACGT-A-C-AG-AAAATCCAGCACAATGTGGAACAACA-TTTCCTA------CCAATCTCTTAGC-TCCATCT------------T-TTC-AGGGAATTGACCTC-TGAGA-TCTTG-GCCT--CATATAATCASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..................GAAGCTGAGACTTTGTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010010
dm3
GGCCATTGTAACCGGGGAGAAGCTGAGACTTTGTGGAGCGTTTACAGAAAGTACGGCGTTTGTCTAAG--------------------------------TCA---AG-TGT---------------------------------------------------------------ACCAAAACATAAA-AGTAGATAAGTTATT-TAAATCAAATCAAATTAGAAATCC------------------------------------------------------AACAGAGATCTTC----------------------------------------TCACAATTATAAACA-GCAGAA------------------TAGATGGAATGGATT----------------------------GCATGCATTTCTATCTTGTAT-CTCCACACA-------------------------------------------AA--------------------------------------------A----------TAT-----TTTATTAT--------AGTAATAAT------------CATGCTACTC-AAATTGGTGTTATTGGTGCTATGCACAGT------AATAAACGT-A-C-AG-AAAATCAACCACATTGTGGAACAACA-TTTCCTA------CCAATCTTTTAGC-TCCATCTTTC--CCGCTCGTTTTC-AGGGAATTGCCCTC-TGAGA-TCTTG-GCCT--CATATAATCASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
........................................................................................................................................................................................................................................................................................................................................................................................TAGATGGAATGGATT----------------------------GCATGCATT................................................................................................................................................................................................................................................................................................................................................................2415.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATAAT------------CATGCTACTC-AAATTGGTG.....................................................................................................................................................................2614.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................A------------------TAGATGGAATGGATT----------------------------GCATGCATT................................................................................................................................................................................................................................................................................................................................................................2513.0030000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATAAT------------CATGCTACTC-AAATTGGTGT....................................................................................................................................................................2713.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATAAT------------CATGCTACTC-AAATTGG.......................................................................................................................................................................2413.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................TACGGCGTTTGTCTAAG--------------------------------TCA---AG-TGT---------------------------------------------------------------.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
................................................................................................................................................................................CCAAAACATAAA-AGTAGATAAGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGT-A-C-AG-AAAATCAACCACATTGTGGA......................................................................................................2712.0020000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.GCCATTGTAACCGGGGAGAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................AGAA------------------TAGATGGAATGGAT......................................................................................................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000
...............................TGTGGAGCGTTTACAGAAAGTACGGCG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
............................................................................................................................................................................................................................................................................................................................................................ACA-GCAGAA------------------TAGATGGAATGGATT----------------------------GC.......................................................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000100000000000000000000000000
.................................................................................................................................................................................................GATAAGTTATT-TAAATCAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................AACA-GCAGAA------------------TAGATGGAATGGATT----------------------------GCA......................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
....................................................................................................................................................................................................................................................................................................................................................................AA------------------TAGATGGAATGGATT----------------------------GCATGCATT................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
.....................GCTGAGACTTTGTGGAGCGTTTACAGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCTA------CCAATCTTTTAGC-TCCATCT.............................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................TACAGAAAGTACGGCGTTTGTCTAAG--------------------------------TC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................GAA------------------TAGATGGAATGGATT----------------------------GCATGCATT................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........CCGGGGAGAAGCTGAGACTTTGTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTACTC-AAATTGGTGTTAT.................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......GTAACCGGGGAGAAGCTGAGAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTAGC-TCCATCTTTC--CCGCTCGT................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TC-AAATTGGTGTTATTGGTGCTATGC......................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................AGATGGAATGGATT----------------------------GCATGCAT.................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................TAGATGGAATGGATT----------------------------GCAA.....................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGCTACTC-AAATTGGTGTT...................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................TACGGCGTTTGTCTAAG--------------------------------TCA---AG-TG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
......................................CGTTTACAGAAAGTACGGCGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGTGTTATTGGTGCTATGCA.....................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAT------------CATGCTACTC-AAATTGGTGTT...................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................GTGGAGCGTTTACAGAAAGTACGGCGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..............................TTGTGGAGCGTTTACAGAAAGTACGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTC-AAATTGGTGTTATTGGTGCTATG.......................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................CTGAGACTTTGTGGAGCGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GT-A-C-AG-AAAATCAACCACATTGTGGAA.....................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................TACAGAAAGTACGGCGTTTGTCTAAG--------------------------------........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............GGGAGAAGCTGAGACTTTGTGGAGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................GCTGAGACTTTGTGGAGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................TGAGACTTTGTGGAGCGTTTACAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTTGTAT-CTCCACACA-------------------------------------------AA--------------------------------------------A----------TAT-----TT............................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................GAGAAGCTGAGACTTTGTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACCACATTGTGGAACAAC.................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-A-C-AG-AAAATCAACCACATTGTGGA......................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTC-AAATTGGTGTTATTGGTG............................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................AATTATAAACA-GCAGAA------------------T...................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................GAAAGTACGGCGTTTGTCTAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AT-----TTTATTAT--------AGTAATAAT------------CATGCTAC.................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGTGTTATTGGTGCTA.........................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTTTTC-AGGGAATTGCCCT..............................2111.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TC-AAATTGGTGTTATTGGTGCTA.........................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TC-AAATTGGTGTTATTGGTGCTATG.......................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................TTTACAGAAAGTACGGCGTTT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAT------------CATGCTACTC-AAATTGGTGTTATT................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T------AATAAACGT-A-C-AG-AAAATCAACCACAT............................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................CA-GCAGAA------------------TAGATGGAATGGATT----------------------------GCA......................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................ACA-GCAGAA------------------TAGATGGAATGGAT......................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTACTC-AAATTGGTGTTATTGGTGC...........................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................GAA------------------TAGATGGAATGGATT----------------------------GCATGCAT.................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................A-GCAGAA------------------TAGATGGAATGGATT----------------------------GCAT.....................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................AA------------------TAGATGGAATGGATT----------------------------GCATG....................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATCAACCACATTGTGGAACAACA-...............................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAACCACATTGTGGAACA...................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................TGTGGAGCGTTTACAGAAAGTA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................GTTTACAGAAAGTACGGCGTTTGTCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................AGAA------------------TAGATGGAATGGATT----------------------------G........................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
GGCTATTGTAACCGGGGAGAAGCTGAGACTTTGTGGAGCGTTTACAGAAAGTACGGCGTTCGTCTAAG--------------------------------ACA---AA-TGTT----------------------------------------GTA-G-CT--------------ATCTAAACATATATGCTAGTTAAGTTATA-CAAAACTAATCAAATTAGACATCA------------------------------------------------------AAAATAGATCTTC----------------------------------------ACACAATTATAATAATTCAGAA------------------TAGCTGGAAT-------------------------------GACCATGCATTTTCGTCTTGTAA-CTCCACACA-------------------------------------------AA--------------------------------------------A----------TAT-----TATCTTAT--------AGTAATAAT------------CATGCTACTC-AAATTGGTGTTATTGGTGCTATGTAAGGA------AATAAAAGT-A-C-AGTAGAATCAACTACATTGTGAAACACCA-TTTCCTA------CCAATCTCTTAGC-TCCGTCTTGC--TCCATCGTTTTC-AGGGAATTGCCCTC-TGAGA-TCTTG-GCCT--CATATAATCASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.........................................................................................................................................................................................................ATA-CAAAACTAATCAAATT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010001000
..........................................TACAGAAAGTACGGCGTTC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0011000000
...............................................................................................................................................................................ATCTAAACATATATGCTAGTTAAGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000010
..........................GACTTTGTGGAGCGTTTACAGAAAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000100
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAT------------CATGCTACTC-AAATTGGT......................................................................................................................................................................2311.0010001000
..................................................................................................................................................................................................................................................................................................................................................................AGAA------------------TAGCTGGAAT-------------------------------GACCA......................................................................................................................................................................................................................................................................................................................................................................1911.0010000100
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGTTATTGGTGCTATGTAAGG..................................................................................................................................................2311.0011000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGTGCTATGTAAGGA------AATAAAAGT-.................................................................................................................................2611.0010000100
.......................................GTTTACAGAAAGTACGGCGTT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000100
droYak3
GGCCATTGTGACCGGGGAGAAACTGAGACTTTGTGGAGCGTTTACAGAAAGTACGGCGTTTGTCTAAG--------------------------------ACA---AA-TGTT----------------------------------------TTA-T-CC--------------ATCTAATCATATA---TAGTTAAGTTATA-TAAAACTAATCAAATTAGACATCC------------------------------------------------------AAA---------C----------------------------------------ATACAGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATAATAATTCATAATTCATATAAT------------CATGCTACTC-AAAATGGTGTTATTGGTGCTATGTAAAGA------AATAAAAGT-A-C-AGTAGAAGCAACTACATTGTGGAACAACA-TTTCGTA------CCAATCTTTTAGC-TACATCTTGC--CCCATCGTTTTC-GGGGAATTGCCCTC-CGAGA-TCTTG-GCCT--CATATAATCASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...................AAACTGAGACTTTGTGGAGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00101000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGA------AATAAAAGT-A-C-AGTAGAAGCA...................................................................................................................2411.00100000010000
.GCCATTGTGACCGGGGAGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00101000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGA------AATAAAAGT-A-C-AGTAGAA......................................................................................................................2111.00100000010000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATGGTGTTATTGGTGCTAT........................................................................................................................................................2211.00101000000000
.......................................GTTTACAGAAAGTACGGCGTT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGA------AATAAAAGT-A-C-AGTAGAAGCA...................................................................................................................2611.00101000000000
.............................................................GTCTAAG--------------------------------ACA---AA-TGTT----------------------------------------TTA-T-CC--------------.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00101000000000
droEug1
GGCCATTGTTACGGGCGAGAAACTGAGACTATGTGGAGCTTTCACAGAGAGCACGGCTTTTGTCTAAG--------------------------------ACA---AG-TTTT----------------------------------------GT-TTT-T---------------TGTAAGGAAAT-----------ACTTTA--AAAATTAATCAATTTGGAAAAGCTAAGCATGACATA----A----------TCTAC------ATGTAAAA---------G-AAGAACTTAATAGAAGGTCTTAGAAATG---AGCCTGTAAGAAAGCA--A---------------------GAAAAAAGTAAATGGAAAAAGCTGGGAA-------------------------------AGACATGCATTTCCTTCTTGAAA-TTCCGCATA-------------------------------------------AACACTA-AAAAGTCTTGTAGAGTCAA---------AG--------TTATTATAAAAGTA-----TATAAAAATCGATTATAT---ATAT------------TATGCTACTC-AAATTGGTGTTATTGGTGCTTTAAAAATAA-----AATAAAAAT-T-C-ATAATAATCAAAGAAATTCCAGAATAACAACTTCCTT------ACAATCTTTTAGC-TTCATCT--C--CTTATTGTTTCG-AGGGAATTGCCCTG-TAAGA-TCTGAGGTCT--CATATAATCASizeHit CountTotal NormTotal
No Reads
droBia1
GGCCATTGTCACGGGCGAGAAACTGAGACTTTGTGGAGCCTTCACAGAAAGTACAGCTTTTGTCTAAG--------------------------------ACTTATAGATTTT----------------------------------------TTA-------------------GTATAAATA--TTTAATAGT-AAGCTATA--AAAACTAATCAAATTAGAAGAGCAAAGCAGGACATA----A----------TAT-T------ATTTAAAA---------C-ATAAGCTTCATAGAAGACTTTCAGAATA---AAACTATAACCTA-C------------AAAAAT-TAA------AAATCAA----------AACGTAAAGGAACGCATGTTAGCTTGATTAACCTGGAATA---ACGCATTTGCTTCTCGAAA-TTCCACACA-------------------------------------------GA-AAATGAAATTA--------TACA------CAACCGTTTTTAAAA----------TAT-----TATTTTAATCAATAAC-----TTAT------------TATGCTACTA-GAATTGGTGTTATTGGTGCTACAGAAAGAA-----AATAAAAAT-A-T-T-TTTAATCAACTACATTGCAGT-----------CTT------CCAATCTTCTGGCCTTCATCTTCC--CTCATCATTTTCTTGGGAATCGCCCTC-TGAGA-TCTTGGGGCA--CATATAATCASizeHit CountTotal NormTotal
No Reads
droTak1
GGCCATTGTCACGGGCGAGAAACTGAGACTTTGCGGAGCTTTTACAGAAAGTACTGCTTTTGTTTAAAAAA------------------------------TA---AA-ACTT----------------------------------------TTA-------------------------ATA--TT---TAGTA-AACTATAAGAAAACTAATTAAATTAGAAAAGCAAAGCAGGACATACATAA----------ATTGT------AACCAAAA---------T-AGGAACTTCATAGAAGATTT---------------------------AA----------------------GAAAAATCAAAATGGAATTAGCTGGAAA-------------------------------AGACATGCATTTGCTTCTTGTAA-TTCCACACA-------------------------------------------GA-AATGAAAACTA--------TATAA--------ACATT--------TTTAAAAAATAT-----TATTAAAATCAATTAT-----TTAT------------TATGCTACTC-AAATTGGTGTTATTGGTGCTATAGAAAGAAAAATAAATATAAAT-AAT--ATATAATCAACTATGTTCTGGGGAAACA-TTTCCTT------ACAATCTTTCAGC-TTCGTCT----------CATTTTCCGGAGAATCGCCCTC-CGAGA-TCTTGGGCCA--CATATAATCASizeHit CountTotal NormTotal
No Reads
droEle1
ACTTA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA--------------------------------------------ATATTATATAATAA-----TATAAGTATAAATAAT-----TTAT------------TATACTACTC-AAATTGGTGTTATTGGTGCTATAAAAATAA-----AATATAAATAA-CAATTTTAATCAACAATATTTTAGAACAACC--------------------TTTT-----------TCT--CAAATCATTTTT---GGAGTAGACCCC-TGAGA-TCTTGGGCCA--CAAATAATCASizeHit CountTotal NormTotal
No Reads
droRho1
GGCCATTGTCACCGGCGAGAAACTGAGACTTTGTGGAGCTTTTACCGAAAGTACAGCTTTTGTTTAAGAATGG---GAAACTATTGTGTAAGTGATA---------AA-TGTTATCTTTTAACGGA-----------------------------------------------------------------------------------TTTAATCA---TTGAAGAGCAAATCAGGACAAGAATAATGCTTAGTAAACTGAACGATGAATCAAAA---------T-AGAAAC-CA----------------------------------------TTACGGTTTTGA---------------------ATAGAACTATTTGGAAA-------------------------------AGACATGCATTTGCTTCTTAAAA-CTCCAGGCA-------------------------------------------GC-ACAA-AAAATA--------TTTAA-------------------ATATTATAAAATAA-----TATTAGAATGAATAAT-----TTAT------------TATGCTACTC-AAATTGGTGTTATTGGTGCTATATAAAGAA-----AATAAAAAATA-C-A-TATATTCAAATACATTTATGAACATCC-TTTCTA---------------------------------GTTAACGTTTTT-GGAGAATCAACCTC-GGAGA-TCTTGGGCCA--CATATAATCASizeHit CountTotal NormTotal
No Reads
droFic1
GGCCATTGTCACGGGCGAGAAACTGAGACTCTGTGGAGCTTTTACGGAGAGCACGGCTTTTGTCTAAAGATAC---CATACAAACTT----------ACT---TCAAGATTTT----------------------------------------GT-ACT-TCATATAAATCATTC-----AGTA--T------AT-GAACTAAA--ACAAGAACTTAAATTATTTGAGCAAACCAGGACTTTC----------------------------------------AACAGAAAACTTCATAGAAGTAATTT-GAATAACAA-------ACCTA-C------------TTAACT-GAAAAA------------------AAACTGAAAA-------------------------------GGAATTGCATTTGCTTCCCAATGTTTCCATACA-------------------------------------------GC-ACAA-AAAA----------TTTAA-------------------ATATTACAAAATAA--C--TATAAG------------------------------------------TAATCGGTGTTATTGGTGCTACATAAACGA-----ATTAAAACA-A-C-ACTTTAATCAACCAAATTCCGTAACCACC-TTTCTGT------AGAGTCTTTTAGC-TTCATCTCCT--CGCATCGTTT-T-GGGGAATCGCCCTG-CGAGA-TCTGGGGCCA--CATATAATCASizeHit CountTotal NormTotal
No Reads
droKik1
AGCCATTGTCACGGGCGAGAAGCTAAGGCTTTGTGGGGCTTTCACAGAGAGTACAGCCTTTGTTTAGGAACATAAT----TTAAC--------------------------------------GGATTCCCAGACAAAATGAGAGATCTT---TG-AC-----------------------------------------------------------------------------------------------------TAC------ATTTAAAGGATTCTATAGAAAAATCTTCATAGAAGTTTTTAAGTA------------------------------------------AAA------------------AAGTTTAAGT---------------------GTTCT-----AGAAAAGCATTTGCTTCTCGAAA-TTCCACA------------------------------------------------------------------ATTTGAAT--------------------TTATAAAATATAAACATATGATATTGAATA--------ACT------------TATGCAACTT-AAATTGGTGTTATTGGTGCTACATATTTA--TACAAATAAAACT-A-A-ATTATAACCAACAACATTT-GGTA------TTTCT-T-------GGAACTTTCAAC-TC--------------------------------------------------CCCT--CATATAGCCASizeHit CountTotal NormTotal
No Reads
droAna3
AGCCATTGTTACTGGCGAAAAGTTGAGACTCTGTGGGGCATTTACTGAAAGTACAGCCTTTCTTTAAAGAGAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT----------------------------------------T-----------------------------------------------------------------------------------------------------------------AACTCAGCGCAAAATA--ATCTGAA-ATATATATTACTCTATA---------------------ATCTGTATATCTAA-----T-----A----------TAC-----TCCACTTT--------AATAAT---------------------ATAC-TGTTTGGTGACATAGGTGCTTTATCATTT------TATAAAAAT-A-A-AATATAAAA-------------AA----------------------------CACT-ACA----TAC--TCTAACAAGTAA-CTGGAACATCTTTT-GGAGA-TGTTG-GCCAAAAATTTAATCASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
....................AGTTGAGACTCTGTGGGGCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000010
....................AGTTGAGACTCTGTGGGGCATTT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000010
..............................................................TTTAAAGAGAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT----------------------------------------T-----------------------------------------------------------------------------------------------------------------AACA......................................................................................................................................................................................................................................................................................................................................18100.101000100
droBip1
GGCCATCGTAACTGGCGAAAAGTTGAGACTTTGTGGGGCATTTACTGAAAGTACAGCCTTTCTTTAAAGATAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TC----------------------------------------TA-----------------------------------------------------------------------------------------------------------------AA--AGCGCAAAAAAATATCTGAA-ATATATATTACTATATA---------------------ATCTGTATATCTAA---------------------------------------------T-----A---------------TACTCTACTCTTAATTGGTGTCATAGGTGCTATATAATTAT--A--AATAAAACA-A-A-ATTTAAA---------------AA----------------------------CAGT-ACA----TAC--TCCAGCAT-TAC-AGTGAAATACCTTCTGGTGA-TGTTG-GTCTAAAATTTAATCASizeHit CountTotal NormTotal
No Reads
dp5
GGCCATTGTCACGGGGGAAAAGCTAAGACTCTGTGGCGCATTCACGGAGAGCACAGCCTTTGTTTAGGGAGAAAAA----CTACA--------------------------------------GGAATTCCAGG---AATGA--------CTG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA----------------------GAAGG---------------------------------------------------------AT--------------------------T-AAATCTAAAGAAATTA--ATATGAATATGAATGTTATTCCACA---------------------ATACG------CAAGACTATTTAAAC----------TAT-----TATATTA-------------ATA--TGTACTTCCATT----------GTTTTTGGTTTTATTTGTGCTTTAAAT-AA--TA--CACACAAAG-A-A-ATTAT------------TA-AGTA------TTCCTGTCGGGGCACAAACTTTCAGC-GTCT-CCCGCCGCAAAACAG-TTA-AAGGAACTGCACTC-TGGGA-TCTGCAGCCA--CATATAATCASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..........................................................................AA----CTACA--------------------------------------GGAATTCCAGG---AATGA--------......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100000000
droPer2
GGCCATTGTCACGGGGGAAAAGCTAAGACTCTGTGGCGCATTCACGGAGAGCACAGCCTTTGTTTAGGGAGGAAA-----CTACA--------------------------------------GGAATTCCAGG---AATGA--------CTG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA----------------------GAAGG---------------------------------------------------------AT--------------------------T-AAATCTAAAGAAATTA--ATATGAATATGAATGTTATTCCACA---------------------ATACGCATACGCAAGACTATTTAAAC----------TAT-----TATATTA-------------ATA--TGTACTTCCATT----------GTTCTTGGTTTTATTGGTGCTTTAAAT-AA--TA--CACACAAAG-A-A-ATTAT------------TA-AGTA------TTCCTGTCGGGGCACAAACTTTCAGC-GTC-TCTCGCCGCAAAACAG-TTA-AAGGAACTGCACTC-TGGGAATCTGCAGCCA--CATATAATCASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
AGCCATAGTTACGGGAGAGAAATTGAGATTGTGTGGTGCATTCACAGAGAGCACAACATTTGTTTAAC--------------------------------ACT---T-------------------------------------------------------------------------AATATTTATA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACTAAAATG-TGACAA------TTTA--CATATATATASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
......................................CATTCACAGAGAGCACAACATTT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100100
.....................................GCATTCACAGAGAGCACAACATTTGTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100100
droVir3
AGCGATTGTTACGGGCGACAAGCTAAGACTCTGTGGCGCCTTCACGGAGAGCACAACCTTTGTTTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
........................AAGACTCTGTGGCGCCTTCACGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2320.501000100000000000000000000000000000000000000000000000000000000000
droMoj3
CGCAATTGTCACGGGCGAGAAGCTCAGACTCTGTGGAGCATTCACTGAGAGCACAGTATTTGTCTAGGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
AGCCATTATCACTGGCGACAAGTTGAGACTTTGTGGTGCTTTCACAGAGAGCACGACTTTTGTTTAGAGA----------------------------------------------------------------------------------------------------------------CATATA-ATAATATAATATATA-TATATCTGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/19/2015 at 05:42 AM