ID:

dsi_15921

 Coordinate:

3l:14409204-14409353 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-6.4 -6.3 -6.3 -6.2

Flybase annnotation

three_prime_UTR [3l_14407665_14409670_+]; exon [3l_14405715_14409670_+]

Repeatable elements

NameClassFamilyStrand
AT_richLow_complexityLow_complexity+

Sense Strand Reads

##########################################################################################################################################################################################################################################################
GTTGCATTTTTTGACTTTCGAAAGTTATTCAATTTCAAATTCGTATGCCGCTATATATAGAGTAACAGATATTGTAGACTGCTTTCGATAAACTGAATAATTGAAACGAATGTTTTGCATATACTTACTATTGCATAATTGTACGAACATAAATATATATATATTTTTATATATTCCTGTGTTACATGTGCGCCAACTAGCAACAATAATTTACAGCACTCGCTCTCCCAGACACACTCATTTTGCCAAA
************************************************************************(((........(((((((.....................(((.((((............)))).)))))).)))).....)))*********************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR902008
ovaries
 SRR553488
RT_0-2 hours eggs
 M053
female body
 M024
male body		 SRR902009
testis
 GSM343915
embryo
........................................................................TGTAGACTGCTTTCGATAAACTGAA......................................................................................................................................................... 25 0 1 13.00 13 4 7 2 0 0 0 0 0 0 0
.......................................................................TTGTAGACTGCTTTCGATAAACTGAA......................................................................................................................................................... 26 0 1 10.00 10 9 1 0 0 0 0 0 0 0 0
.....................................................TATATAGAGTAACAGATATTGTAGAC........................................................................................................................................................................... 26 0 1 6.00 6 2 1 3 0 0 0 0 0 0 0
.......................................................TATAGAGTAACAGATATTGTAGACTGC........................................................................................................................................................................ 27 0 1 5.00 5 3 2 0 0 0 0 0 0 0 0
.......................................................TATAGAGTAACAGATATTGTAGACTGCT....................................................................................................................................................................... 28 0 1 5.00 5 0 2 1 0 0 1 1 0 0 0
.........................................................TAGAGTAACAGATATTGTAGACTGCT....................................................................................................................................................................... 26 0 1 4.00 4 1 1 1 1 0 0 0 0 0 0
..................................................................................................................................TTGCATAATTGTACGAACATAAATA............................................................................................... 25 0 1 2.00 2 0 0 1 0 1 0 0 0 0 0
..................................................................AGATATTGTAGACTGCTTTCGATAAAC............................................................................................................................................................. 27 0 1 2.00 2 0 0 0 0 0 1 0 0 1 0
.............................................TGCCGCTATATATAGAGTAACAGA..................................................................................................................................................................................... 24 0 1 2.00 2 0 1 0 0 0 1 0 0 0 0
......................................................ATATAGAGTAACAGATATTGTAGAC........................................................................................................................................................................... 25 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
............................................................................................................................................................................ATTCCTGTGTTACATGTGCGCCAACT.................................................... 26 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
..............................................................................................................................................................................................................TAAGTTACAGCACTCGCTCTCCCAGT.................. 26 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0
............................................................................GACTGCTTTCGATAAACTGAATAA...................................................................................................................................................... 24 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
.......................................................................TTGTAGACTGTTTTCGATAAACTGAA......................................................................................................................................................... 26 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0
..................................................................AGATATTGTAGACTGCTTTCGATAAACA............................................................................................................................................................ 28 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0
.....................................................................................CGATAAACTGAATAATTGAAACGAAA........................................................................................................................................... 26 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0
......................................................................ATTGTAGACTGCTTTCGATAAACTGAA......................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.....................................................................TATTGTAGACTGCTTTCGATAAACAA........................................................................................................................................................... 26 2 1 1.00 1 0 0 0 0 1 0 0 0 0 0
..............................................................................................................................................................................................................TAAGTTACAGCACTCGCTCTCCCAGA.................. 26 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.....................................................................TATTGTAGACTGCTTTCGATAAACTGAA......................................................................................................................................................... 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.....................................AATTCGTATGCCGCTATATATAG.............................................................................................................................................................................................. 23 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1
.......................................................TATAGAGTAACAGATATTGTAGAC........................................................................................................................................................................... 24 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
.......................................................................TGGTAGACTGCTTTCGATAAACTGAA......................................................................................................................................................... 26 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................TAATGTACGAACATAAATATATATATA....................................................................................... 27 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.....................................................................................CGATAAACTGAATAATTGAAACGAA............................................................................................................................................ 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
...................................................TATATATAGAGTAACAGATATTGTAGA............................................................................................................................................................................ 27 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
...........................................................................................................................................................................TATTCCTGTGTTACATGTGCGCCAACT.................................................... 27 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0
....................................................ATATATAGAGTAACAGATATTGTAGACC.......................................................................................................................................................................... 28 1 1 1.00 1 0 0 0 0 0 0 0 1 0 0
...............................................................................TGCTTTCGATAAACTGAATAATTGA.................................................................................................................................................. 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
...............................................................AACAGATATTGTAGACTGCTTTCGATAAAC............................................................................................................................................................. 30 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.......................................TTCGTATGCCGCTATATATAGAGTAAC........................................................................................................................................................................................ 27 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
...............................................................................................................................................................................CCTGTGTTACATGTGCGCCAACTAGC................................................. 26 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
.........................................................TAGAGTAACAGATATTGTAGACTGCTTT..................................................................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..............................................................TAACAGATATTGTAGACTGCTTTCGAT................................................................................................................................................................. 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.....................................................................TATTGTTGACTGTTTACGAT................................................................................................................................................................. 20 3 6 0.17 1 0 0 1 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................CGAGACACACTCATT........ 15 1 12 0.08 1 0 0 0 1 0 0 0 0 0 0
................................................................................................................................AAATGCATAACTGTACGAAC...................................................................................................... 20 3 14 0.07 1 0 0 0 0 1 0 0 0 0 0

Anti-sense strand reads

CAACGTAAAAAACTGAAAGCTTTCAATAAGTTAAAGTTTAAGCATACGGCGATATATATCTCATTGTCTATAACATCTGACGAAAGCTATTTGACTTATTAACTTTGCTTACAAAACGTATATGAATGATAACGTATTAACATGCTTGTATTTATATATATATAAAAATATATAAGGACACAATGTACACGCGGTTGATCGTTGTTATTAAATGTCGTGAGCGAGAGGGTCTGTGTGAGTAAAACGGTTT
***********************************************************************************************(((........(((((((.....................(((.((((............)))).)))))).)))).....)))************************************************************************ 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR902008
ovaries
 SRR902009
testis
 M024
male body		 GSM343915
embryo
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
.............................................................................................................................................................................................................................TGAGAGGGGCTGTGTGAGTA......... 20 2 1 1.00 1 0 1 0 0 0 0 0
..............................................CGGCGATATATATCTCATTGT....................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0
.....................................................................................................................................................................................AATGTACACGCGGTTGATCGT................................................ 21 0 1 1.00 1 0 0 1 0 0 0 0
...................................................................................................................................................................................................................ATTTCGTGAGCGAGAGCG..................... 18 2 4 0.25 1 0 0 0 0 1 0 0
...................................................................................................................................................................................................................ATGTCAGGAGCGAGATGGT.................... 19 3 9 0.22 2 2 0 0 0 0 0 0
...............................................................................................................CAGGACGTATATGAATGA......................................................................................................................... 18 2 5 0.20 1 0 0 0 1 0 0 0
................................................................................................................................................................................................................................GAGGGTCAGTAGGAGTAAAA...... 20 3 14 0.14 2 2 0 0 0 0 0 0
..............................................................................................................AGAAAACGTATAAGAATGGTAA...................................................................................................................... 22 3 8 0.13 1 0 0 0 0 0 1 0
..........................................................................................................................................................................................CCACGCAGTTGAGCGTTGT............................................. 19 3 14 0.07 1 0 0 0 0 0 0 1
...................................................................................................................................................................................................................ATGTCAGGAGCGAGACGGT.................... 19 3 20 0.05 1 0 0 0 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3l:14409154-14409403 + dsi_15921 GT--TGCATTTTTTGACTTTCG-AAA-G-TTA-----T-------------------------------TC-----AAT--T----TCAAA------T--------------------TCG--T---ATGCCGCTATATAT--AGAGTA------------ACAGATATTGTAGACTGCTTTCG-ATAAA------------------CTGAATA--ATTG----------A----------A---------ACGAATGTT-TTGCATATACTTA----CTA---------TTGCATAA-------------TTGTAC-----GAAC-----ATAAAT----ATAT--ATA--TAT--TTTTATATAT-TCCTGTGTTACATGTG--CGC--CAA----------------------CTAGC---AACAATAATTT--ACAGCACTC------GCTCTCCC------A--G--------------ACACACTCA--TTTTGCCAAA---------
droSec2 scaffold_0:6881110-6881360 + GT--TGCATTTTTTGACTTTCG-AAA-G-TTA-----T-------------------------------TC-----AAT--T----TC-AA------T--------------------TCG--T---ATGCCGCTATATAT--AGTGTA------------ACAGATATTGTAGACTGCTTTCG-ATAAA------------------CTGAATA--ATTG----------A----------A---------ACGAATGTT-TTGCATATACTTA----CTA---------TTGCATAA-------------TTGTAC-----GAAC-----ATAAAT----ATATATATA--TAT--TTTTATATAT-TCCTGTGTTACGTGTG--CGC--CAA----------------------CTAGC---AACAATAATTT--ACAGCACTC------GCTCTCCC------A--G--------------ACACACTCA--TTTTGCCAAA---------
dm3 chr3L:14760291-14760535 + TT--TGCATTTTTTGACTTTCA-AAA-G-TTA-----T-------------------------------AC-----AAT--T----TC-AA------T--------------------TCG--T---ATGCCACTATATAT--AGAGTA------------ACAGATATTGTAGACTGCTTTCG-ATAAA------------------CTGAACA--ATTG----------A----------A---------ACGAATGTT-TTGCATATACTTA----CTA---------TTGCATAA-------------TTGTAC-----GAAC-----ATAAAT----------ATA--TAT--TTTTATATAT-TCCTGTGTTACGTGTG--CGC--CAA----------------------CTAGC---AACAATAATTT--ACAGCACTC------GCTCTCCC------C--G--------------ACACACTCA--TTTTGCCAAA---------
droEre2 scaffold_4784:14727441-14727693 + GA--TGCATTT-TTCACTTCCT-AAA-GCTTA-----T-------------------------------CC-----AAT--T----TC-AA------T--------------------TCG--T---ATGCCACTATATAT--AGAGTA------------ACAGATATTGTAGACTGCTTTCG-ATAAA------------------CTGAACA--ATTG----------A----------A---------ACGAATGTT-TTGCATATACTTACATACTA---------TTGCATAA-------------TTGTAC-----GAAC-----ATAAA------------TA--TAT--TTTTATATAT-TCCTGTGTTATGTGTG--CGG--CAA----------------------CTAGC---AACAATAATTT--ACAGCACCTCCCCGCGCTCTCCC------C--G--------------AAACACTCA--TTTTGCCAAA---------
droYak3 3L:14848164-14848416 + GA--TGCATTT-TTCACTTTCT-AGA-G-TTAA----T-------------------------------CC-----GAT--T----TC-AA------T--------------------TCG--T---ATGCCACTGTATAT--AGAGTAACAGATAT----ACAGATATTGTAGACTGCTTTCG-ATAAA------------------CTGAACA--ATTG----------A----------A---------ACGAATGTT-TTGCATATACTTA----CTA---------TTGCATAA-------------ATGTAC-----GAAC-----ATAAA------------TA--TAT--TTTTATATAC-TCCTGTGTTATGTGTGCGCGG--CAA----------------------CTAGC---AACAATAATTT--ACAGCACCC------GCTCTCCC------C--G--------------AAACACTCA--TTTTGCCAAA---------
droEug1 scf7180000409456:1010395-1010641 + GA--T-----------C-TTCT-TAATA-TTA-----A-------------------------------CT-----TGT--T----TC-AT------T--------------------TTGTAT---ATGCCGCTATATATATAAAGTA------------ACAAATATTGTAGACTGCTTTCG-ATAAA----------AAACAAAACTGAACA--AATT----------A----------A---------TGAAATGTT-TTGC--------------TA---------TTGCATAA-------------TCATAC-----GTAC-----ATAAAT----A----TATA--TAT--TTTTATATAT-CCCTGTGTTATGTGTGC-CGG--CAA----------------------CTAGC---AACAATAATTTATACAGCACTC------GCTCTCTC------CCCGA---A---------AAACACTAATTTTTGGCCAAA---------
droBia1 scf7180000302428:5122371-5122614 - AG--T-------------------------AA-----A-------------------------------CC-----CAC--T----TC-GT------T--------------------TCG--T---ATGCCGCTATGTAA--AATGAA------------ACAAATATTGTAGACTGCTTTCG-ATAAA------------------CTGAACT--AATT----------A----------A---------ACAAATGTT-TTGCATATACTTA----CTG--T------TTGCATAA-------------TCGTGC-----GTAC-----ATGAA------------TA--TAT--TTTTATATAT-CCCTGTGTTGTGTGTG--CGG--CAACTAGGCTACTGGCAACTGGCAACTGGC---AACAATAATTC--ACAGCACTC------GCTCTCCC------C--G--------------AAACACTAA--TTTTGCCAAA---------
droTak1 scf7180000412281:4432-4668 + TC--TG---------ACGTTCT-AAATA-TTA-----T-------------------------------AT-----CTT--T----TT-AA------T--------------------TTA--T---ATGCCGCTATATAT--GAAGTA------------ACAAATATTGTAGACTGCTTTCG-ATAAA------------------CTGAACA--AATT----------A----------A---------ACAAATGTT-TTGCATATACTTA----CTA---------TTGCATAA-------------TCATAC-----GTAC-----ATAAA------------TA--TAT--TTTTATATAT-CCCTGTGTTATGTGTG--CGG--CAA----------------------ATAGC---AACAATAATTT--ACAGCACTC------GCTCTCCC------CGCG--------------AAACACTAA--TTTTGCCAAA---------
droEle1 scf7180000491000:2383-2626 + GG--TGTATTT-TTGACTTTCA-GATTG-CTAA----A-------------------------------CT-----TAT--T----TA-CT------T--------------------TCA--T---ATGCCGCTATATAT--AATGAA------------ACAAATATTGTAGACTGCTTTCG-ATAAA------------------CTGAACA--AATT----------A----------A---------ATAAATGTT-TTGCATATACTTA----CTA---------TGGCATAA-------------TCATAC-----GTAC-----ATGAA------------TA--TAT--TTTTATATAT-CCCTGTGTTATGTGTG--CGG--CAA----------------------CCAGC---AACAATAAATT--ACAGCACTC------GCTCTACC------C--A--------------AAACACTCA--TTTTGCCAAA---------
droRho1 scf7180000777233:44608-44851 - AT--CGAAATTTTGAACTTTCT-AAATA-TTA-----T-------------------------------CC-----CAT--T----TC-GA------T--------------------TCA--T---ATGCCGCTATATAT--AAAGAA------------ACAAATATTGTAGACTGCTTTCG-ATAAA------------------CTGAACA--AATT----------A----------A---------ATAAATGTT-TTGCATATACTTA----CTA---------ATGCGTAA-------------TCATAC-----AAAC-----ATAAA------------TA--TAT--TTTTATATAT-CCCTGTGTTATGTGTG--CGG--CAA----------------------CCAGC---AACAATAATTT--ACAGCACTC------GCTCTCCA------C--C--------------AAACACCCA--TTTTGCCAAA---------
droFic1 scf7180000453807:216743-216981 + TT--TAA----------------AAATA-TTA-----T-------------------------------CCCATT-TGT--T----TC-T------------------------------GTTT---ATGCCGCTATATAT--AAAGTA------------ACAAATATTGTAGACTGCTTTCG-ATAAA------------------CTGAACA--AATT----------A----------A---------AGAAATGTT-TTGCATATACTTA----CTA---------TTGCATAA-------------TCATAC-----GAAC-----ATAAAT----A----TATA--TAT--TTTTATATAT-CCCTGTGTTATGTGTG--CGG--CAA----------------------CTAGC---AGCAAGAATTT--ACGGCACTC------GCTCTCCC------C--GAAAA----------AAAAACTCA--TTTTGCCAAA---------
droKik1 scf7180000302383:907736-907946 + TA--TATATAT----------ATA------TATCTTGT----------------------------AACCC-----CATT-T----TG-TG------T--------------------TAA--T---ATGCCGCTATATAT--ATACAA------------ATA---AAGGTAGACTGCTTTCAAATAAA------------------CTAAACATTAATT----------A----------A---------ACAAATGTT-TTGCATATATTT--------------------------------------------------------------------------------TT--ATATATGTAT-CCCTGTGTTATATGTG--T--------------------------------GC---AACAATAATTT--ATCGC---T------GCTCTCTC------C--AA---AAAATCACACACTCACTCATATTTGGCCAAA---------
droAna3 scaffold_13337:4343321-4343567 - CT--TAT--------------------------------------------------------------TT-----TATTTT----TC-G------------------------------ATAT---ATGCCTCTGTATAA--TGAATA-------TTTA-ACAAA-ATTGTAGACTGCTTTCG-AGAAA------------------ATGAACA--AATT----------A----------A---------A-AAGTGTT-TTGCATATACTTA----CTA---------CTGCATATATA----------TAGTAT-----ATACAATATATAA-TAAATATAT--ATA--TATTTTTTTATATAACCCCAGTGTCATGTTCG--C--------------------------------GA---AACAATAATTT--ACAGCACAC------GCTCTCTC------GC---CAC----------AGACACTCGT-TTTTGCCAAAAGAAATTAA
droBip1 scf7180000395450:471352-471616 - AT--A-T--------------GTACATC-TTT-----T-------------------------------CTTATTTAAT--T----TC-A------------------------------A--T---ATGCCTCTGTATAA--TAAGTA-----TATTCAAACAA--ATTGTAGACTGCTTTCG-ACAAA------------------ATGAACA--AATT---------AA----------A---------AGAAATGTTTTTGCATATACTTA----CTA---------CTGCATATACATGGTATATATATATATGGTATATACAATATATAAAT----ATAT--ATA--TTT--TTTTATATATCCCCTGTGTCATGTTT------------------------------------GC---AACAATAATTT--ACAGCACAC------GCTCTCTC--TC--TC---CACA---------AAACACTCTT-TTTTGCCAAA---------
dp5 XR_group6:988528-988791 - GCCCTGGAATTGTCTATTTTCG-AAAT--ATA--------AATACAAACATAACAAACTTTCCCTAAAA-----CTAAT------------------T--------------------TTG--A---ACGCTGCTATATAT--GATATA------------ACAAATAATTTAGACTGCTTTCG-ATAAT------------------GTGAACA--AATT----------A----------A---------AT----------------------------TGCTTGATATTGTATA--CACGATATACACATGTAC-----GAGT-----ATATA-----TT--ATATA--TAT--TTTTATATAT-G--------------A--CAA--CAA----------------------TCAGC---AACAATAATTT--ACAGCACTT------GCGCTCCTCATATTCTCG--------------AACAATTCG--TTTTGCCAAA---------
droPer2 scaffold_12:1667293-1667556 - GCCCTGGAATTGTCTATTTTCG-AAAT--ATA--------AATACAAACATAACAAACTTTCCCTAAAA-----CTAAT------------------T--------------------TTG--A---ACGCTGCTATATAT--GATATA------------ACAAATAATTTAGACTGCTTTCG-ATAAT------------------GTGAACA--AATT----------A----------A---------AT----------------------------TGCTTGATATTGTATA--CACGATATACACATGTAC-----GAGT-----ATATA-----TT--ATATA--TAT--TTTTATATAT-G--------------A--CAA--CAA----------------------TCAGC---AACAATAATTT--ACAGCACTT------GCGCTCCTCATATTCTCG--------------AACAATTCG--TTTTGCCAAA---------
droWil2 scf2_1100000004949:1047826-1047956 + AG--T------------TTTCA-AAAT------------------------------------------------------T---------------T--------------------TAA--T---ATGCTACTATATCT--AACAAA------------TC---TGTTGTAAACTGCTTTCA-AAAGA------------------AAAAGAA--ACAA----------C--------AAAGCAGAATAAA----CAAT-TT------GCTTG----CTT---------ATGTATG----------------------------T-----ATGTA------------TA--TAT--GTATGTATGT-T-------------------------------------------------------------------------------------------------------------------------------------------------
droVir3 scaffold_13049:16856125-16856377 + TC--TCTAATTGGTG-CTT-CA-GAATC-TTA-----T-------------------------------TC-----GAT--TAATCGA-AA------TTCGTTAAAGTATTTTTAAAATGA--TTTCATGCC--CAAAAAC--AAACGA------------ACAAATATTGTAGACTGCTTTG--CTAAA------------------ACGT--T--ATAG----------A--AATCTGATGTCACATT----GAATATT-TCGTT---------------TGCCTAATTTTAAATA--TATTATATAC--ATATAA-----ATAC-----ATATA--------T--ATA--TATT-TTTTATATAT-ACATGTTCCATGTACG--TACTTCTA----------------------AT-TCCACAATAATAATTT-------------------------------------------------------------------------------
droMoj3 scaffold_6680:19833923-19834130 - GT--G-C-----------TTTA-AGAT----A-----TTCATTACAA-------------------------------------------------------------------------A--T---ATGCCA----------ACTCAA------------ACAAATAACGTAGACTGCTTTGG--TATATGG---------------ACGTTTT--TTAG----------G---AGCTGAGGTTACGTT----------------AAATACTTG----CT-TGTTTCATTTTAAGTA--TCCTATATACAAATATAT-----ATAC-----ACATA-----TT--ATATA--TTT--TTTTATATAT-ACATGTCCAATGTACG--TACTTTTA----------------------AAGGC---CACAATAATTT-------------------------------------------------------------------------------
droGri2 scaffold_15110:16250338-16250600 - TA--TACATTT----------A-AGTT----A-----T----------------------------------------T--T----TT-GAAAAAGT-TCTGTAAACATTTTCTGAAATCA--CTTCATGC---CAACTGA--AACGAA------------CAAAATATTGTAGACTGCTTTGG--TATATTGTTATAAAAAAAAAACAAGAACA--AAAAGAAAAAGAAAAAAAAACTAACATCACGTT----AACTATT-TCGCT---------------TGCTTAATTTTAAATA--CA----------TAATAC-----GCAT-----ATAC-T----ATAT--ATATATTT--TTTTATAAAT-AAATGTCCAATGTACG--TACTTCT-----------------------AAAGC---CACAATAATTT-------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
GT--TGCATTTTTTGACTTTCG-AAA-G-TTA-----T-------------------------------TC-----AAT--T----TCAAA------T--------------------TCG--T---ATGCCGCTATATAT--AGAGTA------------ACAGATATTGTAGACTGCTTTCG-ATAAA------------------CTGAATA--ATTG----------A----------A---------ACGAATGTT-TTGCATATACTTA----CTA---------TTGCATAA-------------TTGTAC-----GAAC-----ATAAAT----ATAT--ATA--TAT--TTTTATATAT-TCCTGTGTTACATGTG--CGC--CAA----------------------CTAGC---AACAATAATTT--ACAGCACTC------GCTCTCCC------A--G--------------ACACACTCA--TTTTGCCAAA---------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.........................................................................................................................................................................TGTAGACTGCTTTCG-ATAAA------------------CTGAA..............................................................................................................................................................................................................................................................................................................25113.001300000047200000000
........................................................................................................................................................................TTGTAGACTGCTTTCG-ATAAA------------------CTGAA..............................................................................................................................................................................................................................................................................................................26110.001000000091000000000
........................................................................................................................................TATAT--AGAGTA------------ACAGATATTGTAGAC...................................................................................................................................................................................................................................................................................................................................................2616.00600000021300000000
..........................................................................................................................................TAT--AGAGTA------------ACAGATATTGTAGACTGC................................................................................................................................................................................................................................................................................................................................................2715.00500000032000000000
..........................................................................................................................................TAT--AGAGTA------------ACAGATATTGTAGACTGCT...............................................................................................................................................................................................................................................................................................................................................2815.00500010002110000000
............................................................................................................................................T--AGAGTA------------ACAGATATTGTAGACTGCT...............................................................................................................................................................................................................................................................................................................................................2614.00400000011101000000
...................................................................................................................................................................................................................................................................................................TTGCATAA-------------TTGTAC-----GAAC-----ATAAAT----A............................................................................................................................................................................2512.00200000000100010000
...................................................................................................................................................................AGATATTGTAGACTGCTTTCG-ATAAA------------------C..................................................................................................................................................................................................................................................................................................................2712.00200000000010001000
................................................................................................................................TGCCGCTATATAT--AGAGTA------------ACAGA.............................................................................................................................................................................................................................................................................................................................................................2412.00200000001010000000
.........................................................................................................................................ATAT--AGAGTA------------ACAGATATTGTAGAC...................................................................................................................................................................................................................................................................................................................................................2511.00100000000010000000
..............................................................................................................................................................................................................................................................................................................................................................................AT-TCCTGTGTTACATGTG--CGC--CAA----------------------CT................................................................................................2611.00100000000001000000
.............................................................................................................................................................................GACTGCTTTCG-ATAAA------------------CTGAATA--A.........................................................................................................................................................................................................................................................................................................2411.00100000000000010000
...................................................................................................................................................................AGATATTGTAGACTGCTTTCG-ATAAA------------------CA.................................................................................................................................................................................................................................................................................................................2811.00100000000000010000
......................................................................................................................................................................................CG-ATAAA------------------CTGAATA--ATTG----------A----------A---------ACGAAA.................................................................................................................................................................................................................................................................2611.00100000000000010000
.......................................................................................................................................................................ATTGTAGACTGCTTTCG-ATAAA------------------CTGAA..............................................................................................................................................................................................................................................................................................................2711.00100000010000000000
......................................................................................................................................................................TATTGTAGACTGCTTTCG-ATAAA------------------CAA................................................................................................................................................................................................................................................................................................................2611.00100000000000010000
......................................................................................................................................................................TATTGTAGACTGCTTTCG-ATAAA------------------CTGAA..............................................................................................................................................................................................................................................................................................................2811.00100000001000000000
.........................................................................................AA------T--------------------TCG--T---ATGCCGCTATATAT--AG..................................................................................................................................................................................................................................................................................................................................................................................2311.00100000000000100000
..........................................................................................................................................TAT--AGAGTA------------ACAGATATTGTAGAC...................................................................................................................................................................................................................................................................................................................................................2411.00100000000010000000
......................................................................................................................................................................................CG-ATAAA------------------CTGAATA--ATTG----------A----------A---------ACGAA..................................................................................................................................................................................................................................................................2511.00100000001000000000
......................................................................................................................................TATATAT--AGAGTA------------ACAGATATTGTAGA....................................................................................................................................................................................................................................................................................................................................................2711.00100000000001000000
.............................................................................................................................................................................................................................................................................................................................................................................TAT-TCCTGTGTTACATGTG--CGC--CAA----------------------CT................................................................................................2711.00100010000000000000
.......................................................................................................................................ATATAT--AGAGTA------------ACAGATATTGTAGACC..................................................................................................................................................................................................................................................................................................................................................2811.00101000000000000000
................................................................................................................................................................................TGCTTTCG-ATAAA------------------CTGAATA--ATTG----------A----------.................................................................................................................................................................................................................................................................................2511.00100000001000000000
....................................................................................................................................................A------------ACAGATATTGTAGACTGCTTTCG-ATAAA------------------C..................................................................................................................................................................................................................................................................................................................3011.00100000001000000000
.................................................................................................T--------------------TCG--T---ATGCCGCTATATAT--AGAGTA------------AC................................................................................................................................................................................................................................................................................................................................................................2711.00100000000001000000
..................................................................................................................................................................................................................................................................................................................................................................................CCTGTGTTACATGTG--CGC--CAA----------------------CTAGC---..........................................................................................2611.00100000000001000000
............................................................................................................................................T--AGAGTA------------ACAGATATTGTAGACTGCTTT.............................................................................................................................................................................................................................................................................................................................................2811.00100000010000000000
...................................................................................................................................................TA------------ACAGATATTGTAGACTGCTTTCG-AT........................................................................................................................................................................................................................................................................................................................................2711.00100000001000000000
droSec2
GT--TGCATTTTTTGACTTTCG-AAA-G-TTA-----T-------------------------------TC-----AAT--T----TC-AA------T--------------------TCG--T---ATGCCGCTATATAT--AGTGTA------------ACAGATATTGTAGACTGCTTTCG-ATAAA------------------CTGAATA--ATTG----------A----------A---------ACGAATGTT-TTGCATATACTTA----CTA---------TTGCATAA-------------TTGTAC-----GAAC-----ATAAAT----ATATATATA--TAT--TTTTATATAT-TCCTGTGTTACGTGTG--CGC--CAA----------------------CTAGC---AACAATAATTT--ACAGCACTC------GCTCTCCC------A--G--------------ACACACTCA--TTTTGCCAAA---------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
dm3
TT--TGCATTTTTTGACTTTCA-AAA-G-TTA-----T-------------------------------AC-----AAT--T----TC-AA------T--------------------TCG--T---ATGCCACTATATAT--AGAGTA------------ACAGATATTGTAGACTGCTTTCG-ATAAA------------------CTGAACA--ATTG----------A----------A---------ACGAATGTT-TTGCATATACTTA----CTA---------TTGCATAA-------------TTGTAC-----GAAC-----ATAAAT----------ATA--TAT--TTTTATATAT-TCCTGTGTTACGTGTG--CGC--CAA----------------------CTAGC---AACAATAATTT--ACAGCACTC------GCTCTCCC------C--G--------------ACACACTCA--TTTTGCCAAA---------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
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....................................................................................................................................................................................................................................................................................................TGCATAA-------------TTGTAC-----GAAC-----ATAAAT----------ATA--A.................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
GA--TGCATTT-TTCACTTCCT-AAA-GCTTA-----T-------------------------------CC-----AAT--T----TC-AA------T--------------------TCG--T---ATGCCACTATATAT--AGAGTA------------ACAGATATTGTAGACTGCTTTCG-ATAAA------------------CTGAACA--ATTG----------A----------A---------ACGAATGTT-TTGCATATACTTACATACTA---------TTGCATAA-------------TTGTAC-----GAAC-----ATAAA------------TA--TAT--TTTTATATAT-TCCTGTGTTATGTGTG--CGG--CAA----------------------CTAGC---AACAATAATTT--ACAGCACCTCCCCGCGCTCTCCC------C--G--------------AAACACTCA--TTTTGCCAAA---------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
......................................................................................................................................TATATAT--AGAGTA------------ACAGATATTGTAGA....................................................................................................................................................................................................................................................................................................................................................2711.0011000000
........................................................................................................................................TATAT--AGAGTA------------ACAGATATTGTAGAC...................................................................................................................................................................................................................................................................................................................................................2611.0011000000
........................................................................................................................................................................................................................................................................................................TAA-------------TTGTAC-----GAAC-----ATAAA------------TA--TAT--T............................................................................................................................................................2411.0011000000
..........................................................................................................................................................................................TAAA------------------CTGAACA--ATTG----------A----------A---------ACGAATGTT-T............................................................................................................................................................................................................................................................2711.0011000000
..............................................................................................................................................................................................................................................................................................................................................................................AT-TCCTGTGTTATGTGTG--CGG--...........................................................................................................................2111.0011000000
...........................................................................................................................................AT--AGAGTA------------ACAGATATTGTA......................................................................................................................................................................................................................................................................................................................................................2011.0010000010
..................................................................................................................................................GTA------------ACAGATATTGTAGACTGCT...............................................................................................................................................................................................................................................................................................................................................2211.0010000010
...........................................................................................................................................AT--AGAGTA------------ACAGATATTGTAGACTGCT...............................................................................................................................................................................................................................................................................................................................................2711.0011000000
..........................................................................................................................................TAT--AGAGTA------------ACAGATATTGT.......................................................................................................................................................................................................................................................................................................................................................2011.0010000010
...........................................................................................................................................................................................................................TG----------A----------A---------ACGAATGTT-TTGCATATACT..................................................................................................................................................................................................................................................2411.0011000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................AGC---AACAATAATTT--ACAGCACCTCCC.................................................................2611.0011000000
.........................................................................................................................................ATAT--AGAGTA------------ACAGATATT.........................................................................................................................................................................................................................................................................................................................................................1911.0010001000
droYak3
GA--TGCATTT-TTCACTTTCT-AGA-G-TTAA----T-------------------------------CC-----GAT--T----TC-AA------T--------------------TCG--T---ATGCCACTGTATAT--AGAGTAACAGATAT----ACAGATATTGTAGACTGCTTTCG-ATAAA------------------CTGAACA--ATTG----------A----------A---------ACGAATGTT-TTGCATATACTTA----CTA---------TTGCATAA-------------ATGTAC-----GAAC-----ATAAA------------TA--TAT--TTTTATATAC-TCCTGTGTTATGTGTGCGCGG--CAA----------------------CTAGC---AACAATAATTT--ACAGCACCC------GCTCTCCC------C--G--------------AAACACTCA--TTTTGCCAAA---------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
............................................................................................................................................................................AGACTGCTTTCG-ATAAA------------------CTGAACA--..........................................................................................................................................................................................................................................................................................................2411.00110000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................T--ACAGCACCC------GCTCTCCC------C--G--------------A.............................2111.00100100000000
................................................................................................................................................................................................................................................................ATGTT-TTGCATATACTTA----CTA---------TTGC............................................................................................................................................................................................................................2511.00101000000000
................................................................................................................................................................................TGCTTTCG-ATAAA------------------CTGAAC.............................................................................................................................................................................................................................................................................................................1911.00100100000000
...........................................................................................................................................AT--AGAGTAACAGATAT----ACA...............................................................................................................................................................................................................................................................................................................................................................1911.00100000010000
droEug1
GA--T-----------C-TTCT-TAATA-TTA-----A-------------------------------CT-----TGT--T----TC-AT------T--------------------TTGTAT---ATGCCGCTATATATATAAAGTA------------ACAAATATTGTAGACTGCTTTCG-ATAAA----------AAACAAAACTGAACA--AATT----------A----------A---------TGAAATGTT-TTGC--------------TA---------TTGCATAA-------------TCATAC-----GTAC-----ATAAAT----A----TATA--TAT--TTTTATATAT-CCCTGTGTTATGTGTGC-CGG--CAA----------------------CTAGC---AACAATAATTTATACAGCACTC------GCTCTCTC------CCCGA---A---------AAACACTAATTTTTGGCCAAA---------SizeHit CountTotal NormTotal
No Reads
droBia1
AG--T-------------------------AA-----A-------------------------------CC-----CAC--T----TC-GT------T--------------------TCG--T---ATGCCGCTATGTAA--AATGAA------------ACAAATATTGTAGACTGCTTTCG-ATAAA------------------CTGAACT--AATT----------A----------A---------ACAAATGTT-TTGCATATACTTA----CTG--T------TTGCATAA-------------TCGTGC-----GTAC-----ATGAA------------TA--TAT--TTTTATATAT-CCCTGTGTTGTGTGTG--CGG--CAACTAGGCTACTGGCAACTGGCAACTGGC---AACAATAATTC--ACAGCACTC------GCTCTCCC------C--G--------------AAACACTAA--TTTTGCCAAA---------SizeHit CountTotal NormTotal
No Reads
droTak1
TC--TG---------ACGTTCT-AAATA-TTA-----T-------------------------------AT-----CTT--T----TT-AA------T--------------------TTA--T---ATGCCGCTATATAT--GAAGTA------------ACAAATATTGTAGACTGCTTTCG-ATAAA------------------CTGAACA--AATT----------A----------A---------ACAAATGTT-TTGCATATACTTA----CTA---------TTGCATAA-------------TCATAC-----GTAC-----ATAAA------------TA--TAT--TTTTATATAT-CCCTGTGTTATGTGTG--CGG--CAA----------------------ATAGC---AACAATAATTT--ACAGCACTC------GCTCTCCC------CGCG--------------AAACACTAA--TTTTGCCAAA---------SizeHit CountTotal NormTotal
No Reads
droEle1
GG--TGTATTT-TTGACTTTCA-GATTG-CTAA----A-------------------------------CT-----TAT--T----TA-CT------T--------------------TCA--T---ATGCCGCTATATAT--AATGAA------------ACAAATATTGTAGACTGCTTTCG-ATAAA------------------CTGAACA--AATT----------A----------A---------ATAAATGTT-TTGCATATACTTA----CTA---------TGGCATAA-------------TCATAC-----GTAC-----ATGAA------------TA--TAT--TTTTATATAT-CCCTGTGTTATGTGTG--CGG--CAA----------------------CCAGC---AACAATAAATT--ACAGCACTC------GCTCTACC------C--A--------------AAACACTCA--TTTTGCCAAA---------SizeHit CountTotal NormTotal
No Reads
droRho1
AT--CGAAATTTTGAACTTTCT-AAATA-TTA-----T-------------------------------CC-----CAT--T----TC-GA------T--------------------TCA--T---ATGCCGCTATATAT--AAAGAA------------ACAAATATTGTAGACTGCTTTCG-ATAAA------------------CTGAACA--AATT----------A----------A---------ATAAATGTT-TTGCATATACTTA----CTA---------ATGCGTAA-------------TCATAC-----AAAC-----ATAAA------------TA--TAT--TTTTATATAT-CCCTGTGTTATGTGTG--CGG--CAA----------------------CCAGC---AACAATAATTT--ACAGCACTC------GCTCTCCA------C--C--------------AAACACCCA--TTTTGCCAAA---------SizeHit CountTotal NormTotal
No Reads
droFic1
TT--TAA----------------AAATA-TTA-----T-------------------------------CCCATT-TGT--T----TC-T------------------------------GTTT---ATGCCGCTATATAT--AAAGTA------------ACAAATATTGTAGACTGCTTTCG-ATAAA------------------CTGAACA--AATT----------A----------A---------AGAAATGTT-TTGCATATACTTA----CTA---------TTGCATAA-------------TCATAC-----GAAC-----ATAAAT----A----TATA--TAT--TTTTATATAT-CCCTGTGTTATGTGTG--CGG--CAA----------------------CTAGC---AGCAAGAATTT--ACGGCACTC------GCTCTCCC------C--GAAAA----------AAAAACTCA--TTTTGCCAAA---------SizeHit CountTotal NormTotal
No Reads
droKik1
TA--TATATAT----------ATA------TATCTTGT----------------------------AACCC-----CATT-T----TG-TG------T--------------------TAA--T---ATGCCGCTATATAT--ATACAA------------ATA---AAGGTAGACTGCTTTCAAATAAA------------------CTAAACATTAATT----------A----------A---------ACAAATGTT-TTGCATATATTT--------------------------------------------------------------------------------TT--ATATATGTAT-CCCTGTGTTATATGTG--T--------------------------------GC---AACAATAATTT--ATCGC---T------GCTCTCTC------C--AA---AAAATCACACACTCACTCATATTTGGCCAAA---------SizeHit CountTotal NormTotal
No Reads
droAna3
CT--TAT--------------------------------------------------------------TT-----TATTTT----TC-G------------------------------ATAT---ATGCCTCTGTATAA--TGAATA-------TTTA-ACAAA-ATTGTAGACTGCTTTCG-AGAAA------------------ATGAACA--AATT----------A----------A---------A-AAGTGTT-TTGCATATACTTA----CTA---------CTGCATATATA----------TAGTAT-----ATACAATATATAA-TAAATATAT--ATA--TATTTTTTTATATAACCCCAGTGTCATGTTCG--C--------------------------------GA---AACAATAATTT--ACAGCACAC------GCTCTCTC------GC---CAC----------AGACACTCGT-TTTTGCCAAAAGAAATTAASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.......................................................................................................................................................................ATTGTAGACTGCTTTCG-AGAAA------------------...................................................................................................................................................................................................................................................................................................................2211.001000001
.............................................................................................................................................................................GACTGCTTTCG-AGAAA------------------ATGAACA--..........................................................................................................................................................................................................................................................................................................2311.001000001
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAC----------AGACACTCGT-TTTTGCCAAAAGA......2611.001100000
.........................................................................................................................................................................TGTAGACTGCTTTCG-AGAAA------------------ATG................................................................................................................................................................................................................................................................................................................2311.001010000
............................................................................................................................................................................................................................................................................................................................................................................ATAACCCCAGTGTCATGTTCG--C--------------------------------G..............................................................................................2311.001010000
.................................................................................................................................................................................................................................................................................................................................................................................CCCAGTGTCATGTTCG--C--------------------------------GA---AAC.......................................................................................2211.001010000
droBip1
AT--A-T--------------GTACATC-TTT-----T-------------------------------CTTATTTAAT--T----TC-A------------------------------A--T---ATGCCTCTGTATAA--TAAGTA-----TATTCAAACAA--ATTGTAGACTGCTTTCG-ACAAA------------------ATGAACA--AATT---------AA----------A---------AGAAATGTTTTTGCATATACTTA----CTA---------CTGCATATACATGGTATATATATATATGGTATATACAATATATAAAT----ATAT--ATA--TTT--TTTTATATATCCCCTGTGTCATGTTT------------------------------------GC---AACAATAATTT--ACAGCACAC------GCTCTCTC--TC--TC---CACA---------AAACACTCTT-TTTTGCCAAA---------SizeHit CountTotal NormTotal
No Reads
dp5
GCCCTGGAATTGTCTATTTTCG-AAAT--ATA--------AATACAAACATAACAAACTTTCCCTAAAA-----CTAAT------------------T--------------------TTG--A---ACGCTGCTATATAT--GATATA------------ACAAATAATTTAGACTGCTTTCG-ATAAT------------------GTGAACA--AATT----------A----------A---------AT----------------------------TGCTTGATATTGTATA--CACGATATACACATGTAC-----GAGT-----ATATA-----TT--ATATA--TAT--TTTTATATAT-G--------------A--CAA--CAA----------------------TCAGC---AACAATAATTT--ACAGCACTT------GCGCTCCTCATATTCTCG--------------AACAATTCG--TTTTGCCAAA---------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.................................................................AAAA-----CTAAT------------------T--------------------TTG--A---ACGCTGC.............................................................................................................................................................................................................................................................................................................................................................................................2118.0080310000400
..........................................................................................................................................................................................................................ATT----------A----------A---------AT----------------------------TGCTTGATATTGTA...........................................................................................................................................................................................................................2116.0060100000500
............................................CAAACATAACAAACTTTCCCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................2113.0030100000020
...............................................................................................................................................................................CTGCTTTCG-ATAAT------------------GTGAACA--..........................................................................................................................................................................................................................................................................................................2113.0030300000000
.............................................................................................................................................................................................................................................................................................TTGATATTGTATA--CACGATAT...............................................................................................................................................................................................................2113.0030300000000
..........................................................................................................................................................................TTAGACTGCTTTCG-ATAAT------------------GT.................................................................................................................................................................................................................................................................................................................2113.0030300000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATATTCTCG--------------AACAATTCG--TT.................2113.0030200001000
..............................................................CCTAAAA-----CTAAT------------------T--------------------TTG--A---ACGC................................................................................................................................................................................................................................................................................................................................................................................................2112.0020100000100
..........................................................................................................................................................................TTAGACTGCTTTCG-ATAAT------------------G..................................................................................................................................................................................................................................................................................................................2012.0020100000010
.....................................................................................................................................CTATATAT--GATATA------------ACAAATA...........................................................................................................................................................................................................................................................................................................................................................2112.0020000000020
................................................................TAAAA-----CTAAT------------------T--------------------TTG--A---ACGCTG..............................................................................................................................................................................................................................................................................................................................................................................................2112.0020200000000
................................................................TAAAA-----CTAAT------------------T--------------------TTG--A---ACGCTGCTATA.........................................................................................................................................................................................................................................................................................................................................................................................2612.0020000000200
..............................................................................T------------------T--------------------TTG--A---ACGCTGCTATATAT--G...................................................................................................................................................................................................................................................................................................................................................................................2112.0020200000000
....................................................................................................................................................................................TTCG-ATAAT------------------GTGAACA--AATT----------A----------A---------AT----------------------------TGC......................................................................................................................................................................................................................................2712.0020000000200
.................................................................................................T--------------------TTG--A---ACGCTGCTATATAT--GA..................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000200
.................................................................................................................................................................ACAAATAATTTAGACTGCTTT.............................................................................................................................................................................................................................................................................................................................................2112.0020200000000
............................................................................................................................................................................................................................................................................................................CACGATATACACATGTAC-----GAG.............................................................................................................................................................................................2112.0020200000000
.........................................................................................................................................................................TTTAGACTGCTTTCG-ATAAT------------------G..................................................................................................................................................................................................................................................................................................................2112.0020200000000
......................................................................................................................................................................................................................................................................................................TATA--CACGATATACACATGTA......................................................................................................................................................................................................2112.0020200000000
......................................................................................................................................................................TAATTTAGACTGCTTTCG-ATA.......................................................................................................................................................................................................................................................................................................................................2112.0020101000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................T--ACAGCACTT------GCGCTCCTCATA..................................................2211.0010100000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTCG--------------AACAATTCG--TTTTGC.............2111.0010100000000
..............................................................................................................................................................................................................................................................................................................CGATATACACATGTAC-----GAGT-----AT.....................................................................................................................................................................................2211.0010000100000
.............................................................................AT------------------T--------------------TTG--A---ACGCTGCTATATA.......................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
...................................................................................................................................................TA------------ACAAATAATTTAGACTGC................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
................................................................................................................................................................................................................................................................................................ATATTGTATA--CACGATATACA............................................................................................................................................................................................................2111.0010100000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................TTT--ACAGCACTT------GCGCTCCTC.....................................................2111.0010010000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATATTCTCG--------------AACAATTCG--TTTTGCC............2711.0010100000000
.................................................................AAAA-----CTAAT------------------T--------------------TTG--A---ACGCTGCT............................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000010
...........................................................................................................................................................................TAGACTGCTTTCG-ATAAT------------------GT.................................................................................................................................................................................................................................................................................................................2011.0010100000000
....................................................................................................................................................A------------ACAAATAATTTAGACTGCTT..............................................................................................................................................................................................................................................................................................................................................2111.0010100000000
.......................................................................................................................................................................................................................................................................................................ATA--CACGATATACACATGTAC-----................................................................................................................................................................................................2111.0010100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................ATAATTT--ACAGCACTT------GCGC..........................................................2011.0010100000000
.....................................................................................................................................................................................TCG-ATAAT------------------GTGAACA--AATT----------............................................................................................................................................................................................................................................................................................1911.0010100000000
....................................................................A-----CTAAT------------------T--------------------TTG--A---ACGCTGCTAT..........................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
.............................................AAACATAACAAACTTTCCCTA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCG--------------AACAATTCG--TTTTGCC............2011.0010100000000
............................................................................................................................................................................................................................................................AT----------------------------TGCTTGATATTGTATA--CA.....................................................................................................................................................................................................................2011.0010100000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATATTCTCG--------------AACAATTCG--T..................2111.0010100000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................T--ACAGCACTT------GCGCTCCTCATATTCTCG--------------..............................2811.0010100000000
...........................................................................................................................................................................................................................................................................................................................TAC-----GAGT-----ATATA-----TT--ATATA--TA................................................................................................................................................................2111.0010100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................TT------GCGCTCCTCATATTCTCG--------------AACAA.........................2511.0010100000000
...........................................ACAAACATAACAAACTTTCCC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
.....................................................................................................................................................................................................................CA--AATT----------A----------A---------AT----------------------------TGCTTGATATT..............................................................................................................................................................................................................................2111.0010100000000
.............CTATTTTCG-AAAT--ATA--------AATAC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
............................................................TCCCTAAAA-----CTAAT------------------T--------------------TTG--A---ACGCTGCTA...........................................................................................................................................................................................................................................................................................................................................................................................2811.0010100000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTT--ACAGCACTT------GCGCTCCT......................................................2111.0010100000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTT--ACAGCACTT------GCGCTCC.......................................................2011.0010100000000
...................................................................................................................................................TA------------ACAAATAATTTAGACTGCT...............................................................................................................................................................................................................................................................................................................................................2111.0010100000000
...................................................................................................................................................................................TTTCG-ATAAT------------------GTGAACA--AATT----------............................................................................................................................................................................................................................................................................................2111.0010100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................C---AACAATAATTT--ACAGCACTT------..............................................................2111.0010100000000
............................................................................................................................................................................................AT------------------GTGAACA--AATT----------A----------A---------AT----------------------------TGCT.....................................................................................................................................................................................................................................2111.0010100000000
.....................................................................................................................................................................ATAATTTAGACTGCTTTCG-AT........................................................................................................................................................................................................................................................................................................................................2111.0010100000000
..................................................................................................................................................................................................................................................................................................ATTGTATA--CACGATATACACA..........................................................................................................................................................................................................2111.0010100000000
....................................................................................................................................................................................................................................................................................................................................................................................................AA--CAA----------------------TCAGC---AACAATAAT.................................................................................1911.0010010000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCTCCTCATATTCTCG--------------AACA..........................2111.0010100000000
........................................................................................................................................................................................................................................................................................................................................................................TTATATAT-G--------------A--CAA--CAA----------------------TCAGC---..........................................................................................2111.0010100000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................AATTT--ACAGCACTT------GCGT..........................................................1830.3310100000000
.....................................................CAAACTTTCCCTAAAC-----.........................................................................................................................................................................................................................................................................................................................................................................................................................................................1640.2510000000100
droPer2
GCCCTGGAATTGTCTATTTTCG-AAAT--ATA--------AATACAAACATAACAAACTTTCCCTAAAA-----CTAAT------------------T--------------------TTG--A---ACGCTGCTATATAT--GATATA------------ACAAATAATTTAGACTGCTTTCG-ATAAT------------------GTGAACA--AATT----------A----------A---------AT----------------------------TGCTTGATATTGTATA--CACGATATACACATGTAC-----GAGT-----ATATA-----TT--ATATA--TAT--TTTTATATAT-G--------------A--CAA--CAA----------------------TCAGC---AACAATAATTT--ACAGCACTT------GCGCTCCTCATATTCTCG--------------AACAATTCG--TTTTGCCAAA---------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATATTCTCG--------------AACAATTCG--T..................2112.002020000
.................................................................................................T--------------------TTG--A---ACGCTGCTATATAT--G...................................................................................................................................................................................................................................................................................................................................................................................2011.001010000
.........................................................................................................................................................................TTTAGACTGCTTTCG-ATAAT------------------G..................................................................................................................................................................................................................................................................................................................2111.001010000
..................................................................AAA-----CTAAT------------------T--------------------TTG--A---ACGCTGC.............................................................................................................................................................................................................................................................................................................................................................................................2011.001010000
............................................................................................................................................................................................................................................................................................................................................................................................................................................AATAATTT--ACAGCACTT------GCGC..........................................................2111.001010000
..........................................................................................................................................................................TTAGACTGCTTTCG-ATAAT------------------GT.................................................................................................................................................................................................................................................................................................................2111.001010000
..................................................................................................................................................ATA------------ACAAATAATTTAGACTGC................................................................................................................................................................................................................................................................................................................................................2111.001010000
................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTT--ACAGCACTT------GCGCTCCT......................................................2111.001010000
..........................................................................CTAAT------------------T--------------------TTG--A---ACGCTGCTATA.........................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
....................................................ACAAACTTTCCCTAAAA-----CTA......................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001010000
.............................................................................................................................................................................................................................................................................................................................................................................TAT-G--------------A--CAA--CAA----------------------TCAGC---AACAA.....................................................................................2111.001000100
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................TT------GCGCTCCTCATATTCTCG--------------..............................2011.001010000
............................................................................................................................................................................................AT------------------GTGAACA--AATT----------A----------A---------AT----------------------------TGCA.....................................................................................................................................................................................................................................2111.001010000
.......................................................................................................................TG--A---ACGCTGCTATATAT--GATATA------------ACAA..............................................................................................................................................................................................................................................................................................................................................................2711.001100000
..........................................................................................................................................................................TTAGACTGCTTTCG-ATAAT------------------G..................................................................................................................................................................................................................................................................................................................2011.001010000
.....................................................................................................................................................................ATAATTTAGACTGCTTTCG-ATAAT------------------GT.................................................................................................................................................................................................................................................................................................................2611.001010000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................TAATTT--ACAGCACTT------GCGCT.........................................................2011.001010000
........................................................................................................................................................................................................................................................................................................................................................................TTATATAT-G--------------A--CAA--CAA----------------------TCAGC---..........................................................................................2111.001010000
..............................TA--------AATACAAACATAACAAACTTTCCC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001010000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCG--------------AACAATTCG--TTTTGCCA...........2211.001010000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATATTCTCG--------------AACAATTCG--TT.................2111.001010000
.................................................................................................................................................................................................................................................................................................................TATACACATGTAC-----GAGT-----ATATA-----.............................................................................................................................................................................2211.001010000
droWil2
AG--T------------TTTCA-AAAT------------------------------------------------------T---------------T--------------------TAA--T---ATGCTACTATATCT--AACAAA------------TC---TGTTGTAAACTGCTTTCA-AAAGA------------------AAAAGAA--ACAA----------C--------AAAGCAGAATAAA----CAAT-TT------GCTTG----CTT---------ATGTATG----------------------------T-----ATGTA------------TA--TAT--GTATGTATGT-T-------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
....................................................................................................................................................................................................................................................CAGAATAAA----CAAT-TT------GCTTG----............................................................................................................................................................................................................................................2011.00101000
.....................................................................................................................................................................................................................................................AGAATAAA----CAAT-TT------GCTTG----CTT---------ATGTA...........................................................................................................................................................................................................................2711.00101000
droVir3
TC--TCTAATTGGTG-CTT-CA-GAATC-TTA-----T-------------------------------TC-----GAT--TAATCGA-AA------TTCGTTAAAGTATTTTTAAAATGA--TTTCATGCC--CAAAAAC--AAACGA------------ACAAATATTGTAGACTGCTTTG--CTAAA------------------ACGT--T--ATAG----------A--AATCTGATGTCACATT----GAATATT-TCGTT---------------TGCCTAATTTTAAATA--TATTATATAC--ATATAA-----ATAC-----ATATA--------T--ATA--TATT-TTTTATATAT-ACATGTTCCATGTACG--TACTTCTA----------------------AT-TCCACAATAATAATTT-------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
......................................................................................................................................................................TATTGTAGACTGCTTTG--CTAAA------------------ACGT--.............................................................................................................................................................................................................................................................................................................2613.003000000101000000000000000000000000000000100000000000000000000000
............................................................................................................................................................................................................................................TCTGATGTCACATT----GAATATT-TCGTT---------------.........................................................................................................................................................................................................................................2613.003000000000000000000000000200100000000000000000000000000000000000
......................................................................................................................................................................TATTGTAGACTGCTTTG--CTAAA------------------ACGT--T--A.........................................................................................................................................................................................................................................................................................................2812.002000000000000000000000000000200000000000000000000000000000000000
..................T-CA-GAATC-TTA-----T-------------------------------TC-----GAT--TAATCGA-AA------T.................................................................................................................................................................................................................................................................................................................................................................................................................................2712.002000000000000000000000000001000000000001000000000000000000000000
....................................................................................................................................................................................TTG--CTAAA------------------ACGT--T--ATAG----------A--AATCTGA..................................................................................................................................................................................................................................................................................2512.002000000000000000000000000000200000000000000000000000000000000000
......................................................................................................................................................................TATTGTAGACTGCTTTG--CTAAA------------------ACG................................................................................................................................................................................................................................................................................................................2511.001000000000000000000000000000010000000000000000000000000000000000
........................................................................................................................................AAAAC--AAACGA------------ACAAATATTGTAG.....................................................................................................................................................................................................................................................................................................................................................2411.001001000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................T--ATAG----------A--AATCTGATGTCACATT----GAATAT...............................................................................................................................................................................................................................................................2811.001000000000000000000000000000100000000000000000000000000000000000
...................................................................................................................................................................................TTTG--CTAAA------------------ACGT--T--ATAG----------A--AATCTGA..................................................................................................................................................................................................................................................................................2611.001000000000000000000000000000000000000001000000000000000000000000
..............................................................................................................................................................................ACTGCTTTG--CTAAA------------------ACGT--.............................................................................................................................................................................................................................................................................................................1811.001000000000000000000000000000000000000000000000000000000000000100
......TAATTGGTG-CTT-CA-GAATC-TTA-----T-------------------------------TC-----GA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001001000000000000000000000000000000000000000000000000000000000000
.....CTAATTGGTG-CTT-CA-GAATC-TTA-----T-------------------------------TC-----.......................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000001000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................TAG----------A--AATCTGATGTCACATT----GAATAT...............................................................................................................................................................................................................................................................2611.001000000000000000000000000000100000000000000000000000000000000000
.C--TCTAATTGGTG-CTT-CA-GAATC-TTA-----T-------------------------------..............................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000000000000010000000000000000000000000000000000000
.............TG-CTT-CA-GAATC-TTA-----T-------------------------------TC-----GAT--TAATC.............................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000000000000010000000000000000000000000000000000000
.................................................................................TAATCGA-AA------TTCGTTAAAGTATTTT..................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000000000000010000000000000000000000000000000000000
................................................................................................................................TGCC--CAAAAAC--AAACGA------------ACA...............................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000001000000000000000000000000000000000000000000000
................................................................................................................................TGCC--CAAAAAC--AAACGA------------ACAAATATTG........................................................................................................................................................................................................................................................................................................................................................2711.001000000000000000000000000000100000000000000000000000000000000000
.........................................................................................................................................................................TGTAGACTGCTTTG--CTAAA------------------ACGT--T--A.........................................................................................................................................................................................................................................................................................................2511.001001000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................ATTGTAGACTGCTTTG--CTAAA------------------ACGT--.............................................................................................................................................................................................................................................................................................................2511.001000000100000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................TGTCACATT----GAATATT-TCGTT---------------TGCCTAA..................................................................................................................................................................................................................................2811.001001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................ATAG----------A--AATCTGATGTCACATT----GAATAT...............................................................................................................................................................................................................................................................2711.001000000000000000000000000001000000000000000000000000000000000000
..........................................................................................A------TTCGTTAAAGTATTTTTA................................................................................................................................................................................................................................................................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................TAG----------A--AATCTGATGTCACATT----GAATATT-.............................................................................................................................................................................................................................................................2711.001000000000000000000000000010000000000000000000000000000000000000
droMoj3
GT--G-C-----------TTTA-AGAT----A-----TTCATTACAA-------------------------------------------------------------------------A--T---ATGCCA----------ACTCAA------------ACAAATAACGTAGACTGCTTTGG--TATATGG---------------ACGTTTT--TTAG----------G---AGCTGAGGTTACGTT----------------AAATACTTG----CT-TGTTTCATTTTAAGTA--TCCTATATACAAATATAT-----ATAC-----ACATA-----TT--ATATA--TTT--TTTTATATAT-ACATGTCCAATGTACG--TACTTTTA----------------------AAGGC---CACAATAATTT-------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.............................................................................................................................................................................................................................................................................................................................................................................................TACG--TACTTTTA----------------------AAGGC---CACAATAAT.................................................................................2611.001100000
..........................................................................................................................................................................................................................................................................AAATACTTG----CT-TGTTTCATTTTAAGT..........................................................................................................................................................................................................................2611.001100000
droGri2
TA--TACATTT----------A-AGTT----A-----T----------------------------------------T--T----TT-GAAAAAGT-TCTGTAAACATTTTCTGAAATCA--CTTCATGC---CAACTGA--AACGAA------------CAAAATATTGTAGACTGCTTTGG--TATATTGTTATAAAAAAAAAACAAGAACA--AAAAGAAAAAGAAAAAAAAACTAACATCACGTT----AACTATT-TCGCT---------------TGCTTAATTTTAAATA--CA----------TAATAC-----GCAT-----ATAC-T----ATAT--ATATATTT--TTTTATAAAT-AAATGTCCAATGTACG--TACTTCT-----------------------AAAGC---CACAATAATTT-------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
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Generated: 05/19/2015 at 12:21 AM