ID:

dsi_15920

 Coordinate:

3r:17390947-17391186 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-7.9 -7.7 -7.7 -7.6

Flybase annnotation

CDS [3r_17391188_17392315_+]; five_prime_UTR [3r_17390952_17391187_+]; exon [3r_17390952_17392315_+]

No Repeatable elements found

Sense Strand Reads

-------------------------------------------------------#############################################################################################################################################################################################################################################################################################
CATAGCCCGAAATTTGTTTTTGGGTAGACTTCCGATATTTAGATTGAAAAGTGAGTAAATACGACCGGATAGAGCATTAAAACCTACGATTTAGGTAAATCTATGGAGCGCCGCAATGCTGGCCGGCAGGATGGAACGTTAAGATTCGCATATCTGCAGTTTTAGAGCAGAGATTACCGCACTACCTGCGTAGCTCCTGTGATGTAACCACACGACAAATTGCCACTGGACCAGATATAATTGTTATTATCGTGTTTTGCTTTTGTACTGACCCATGTTATTCCTTTCAGAATGACCGCCGTGTTCCGCGTAGGACTGGTGCGGCTCGTCAGCCGCGCCA
**************************************************************************************************************************************************************************...................((....((.(((......................))).)))).************************************************************************************************************ 		Read size # Mismatch Hit Count Total Norm Total SRR553485
Chicharo_3 day-old ovaries
 SRR902008
ovaries
 SRR553486
Makindu_3 day-old ovaries
 M025
embryo
 M023
head
 M053
female body
 M024
male body		 SRR902009
testis
 GSM343915
embryo
 O001
Testis
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
......................................................................................................................................................................................................................................................................................................................TAGGACTGGTGCGGCTCGTCAGCCGA.... 26 1 1 12.00 12 3 4 5 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................................................................TCCGCGTAGGACTGGTGCGGCTCGTCAGC....... 29 0 1 6.00 6 3 0 3 0 0 0 0 0 0 0 0 0 0
.......................GTAGACTTCCGATATTTAGA......................................................................................................................................................................................................................................................................................................... 20 0 1 4.00 4 0 0 0 4 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................................................................TAGGACTGGTGCGGCTCGTCAGCCGAGC.. 28 1 1 3.00 3 0 2 1 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................................................................TAGGACTGGTGCGGCTCGTCAGCCG..... 25 0 1 3.00 3 2 0 1 0 0 0 0 0 0 0 0 0 0
............TTTGTTTTTGGGTAGACT...................................................................................................................................................................................................................................................................................................................... 18 0 1 2.00 2 0 0 0 0 2 0 0 0 0 0 0 0 0
..........AATTTGTTTTTGGGTAGACT...................................................................................................................................................................................................................................................................................................................... 20 0 1 2.00 2 0 0 0 1 0 0 1 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................................................................TTCCGCGTAGGACTGGTGCGGC............... 22 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................................................................TAGGACTGGTGCGGCTCGTCAGC....... 23 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................................................CGTGTTCCGCGTAGGACTGGTGC.................. 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
........GAAATTTGTTTTTGGGTAGACTTCC................................................................................................................................................................................................................................................................................................................... 25 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
........GAAATTTGTTTTTGGGTAGACT...................................................................................................................................................................................................................................................................................................................... 22 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
............TTTGTTTTTGGGTAGACTTCCGA................................................................................................................................................................................................................................................................................................................. 23 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................................................................TAGGACTGGTGCGGCTCGTCAGCCGAGT.. 28 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................AAATGACCGCCGTGTTCCGCGTAGGAC........................ 27 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................................................................TTCCGCGTAGGACTGGTGCGGCTCGTCAGC....... 30 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................AAATGACCGCCGTGTTCCGCGTAGGACT....................... 28 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................CACGACAAATTGCCACTGGACC............................................................................................................ 22 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0
...............GTTTTTGGGTAGACTTCC................................................................................................................................................................................................................................................................................................................... 18 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................................TGACCGCCGTGTTCCGCGTAGGACTG...................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................................AATGACCGCCGTGTTCCGCGTAGGAC........................ 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................GTAGACTTCCGATATTTAGATTGAAAA.................................................................................................................................................................................................................................................................................................. 27 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................AGATTACCGCACTACCTG........................................................................................................................................................ 18 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
..........................GACTTCCGATATTTAGATT....................................................................................................................................................................................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................................................CGCGTAGGACTGGTGCG................. 17 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................................TGTTCCGCGTAGGACTGGTGCGGCTC............. 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.........AAATTTGTTTTTGGGTAGACT...................................................................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................................................................TAGGACTGGTGCGGCTCGTCAGCCGC.... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...........ATTTGTTTTTGGGTAGACTTCC................................................................................................................................................................................................................................................................................................................... 22 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................................................................TTCCGCGTAGGACTGGTGCGGCT.............. 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................................TGTTCCGCGTAGGACTGGTGCGGCT.............. 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...................TTGGGTAGACTTCCGATATTTAGAT........................................................................................................................................................................................................................................................................................................ 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................................GCCGTGTTCCGCGTAGGACTG...................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
.........................AGACTTCCGATATTTAGATTG...................................................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................................................................TTCCGCGTAGGACTGGTGCGGCTC............. 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................ATTGCCGCACTACCTGCATAG................................................................................................................................................... 21 2 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0
...........................................TTGAAAAGTGAGTAAA......................................................................................................................................................................................................................................................................................... 16 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................................................GTTCCGCGTAGGACTGGTGCGGCTCCT........... 27 1 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0
.....................................................AGTAAATACGACCGGATAGAGCA........................................................................................................................................................................................................................................................................ 23 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................................................CGTAGGACTGGTGCGGCTT............. 19 1 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0
...........ATTTGTATTTGGGTAGACTTCCGAT................................................................................................................................................................................................................................................................................................................ 25 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................................TGACCGCCGTGTTCCGCGTAGGAC........................ 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................................................CGTGTTCCGCGTAGGACT....................... 18 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................................................GACTGGGGCGGCTCGTCT......... 18 2 2 0.50 1 0 0 0 0 0 0 0 0 1 0 0 0 0
...............................................................................................................................................................................................................................CACTGGACCGGATCTGATTG................................................................................................. 20 3 8 0.25 2 0 0 2 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................TCTGCAGTTCTAGATCAGGGA....................................................................................................................................................................... 21 3 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 1 0
....................................................................................................................................................................................................................CGGCAAATTGCCTCTGTACC............................................................................................................ 20 3 5 0.20 1 0 0 0 0 0 0 0 0 0 0 1 0 0
..........................................ATTGAAAAGTGAGCAAATAAGG.................................................................................................................................................................................................................................................................................... 22 3 6 0.17 1 0 0 0 0 0 0 0 0 0 0 0 0 1
.......................................................................................GATTTAGGTAGATCT.............................................................................................................................................................................................................................................. 15 1 8 0.13 1 0 0 0 0 0 0 0 0 0 0 0 1 0
...................................................................................................................................................................................................................................................................................................................................GCTCGTCACTCGCGCCA 17 2 9 0.11 1 0 0 0 0 0 0 0 0 0 0 1 0 0
....................................................................................................................................................................................................................................................................................................................................CTCGTCACTCGCGCCA 16 2 20 0.10 2 0 0 0 0 0 0 0 0 0 0 2 0 0
..................................................................................................................................ATGTAACGTTAAGAT................................................................................................................................................................................................... 15 1 15 0.07 1 0 0 0 0 0 0 0 0 0 0 0 1 0
......................................................................................................................................................................................................................................................................................................GCCGCCGTGTTCCGCGA............................. 17 2 16 0.06 1 0 0 0 0 0 0 0 0 0 0 1 0 0
............................................................TCAACCGGATAGAGCA........................................................................................................................................................................................................................................................................ 16 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0 0
....................................ACTTACGTTGAAAAGTGAG............................................................................................................................................................................................................................................................................................. 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 1
..........................................................................................................................................................................................TGCGTAACTCGTGTGA.......................................................................................................................................... 16 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0 0
..........................................ACTGAAAAGTGAGTA........................................................................................................................................................................................................................................................................................... 15 1 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................AGAGCTTACCGCCCTA............................................................................................................................................................ 16 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1 0

Anti-sense strand reads

GTATCGGGCTTTAAACAAAAACCCATCTGAAGGCTATAAATCTAACTTTTCACTCATTTATGCTGGCCTATCTCGTAATTTTGGATGCTAAATCCATTTAGATACCTCGCGGCGTTACGACCGGCCGTCCTACCTTGCAATTCTAAGCGTATAGACGTCAAAATCTCGTCTCTAATGGCGTGATGGACGCATCGAGGACACTACATTGGTGTGCTGTTTAACGGTGACCTGGTCTATATTAACAATAATAGCACAAAACGAAAACATGACTGGGTACAATAAGGAAAGTCTTACTGGCGGCACAAGGCGCATCCTGACCACGCCGAGCAGTCGGCGCGGT
************************************************************************************************************...................((....((.(((......................))).)))).************************************************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 SRR618934
dsim w501 ovaries
 M024
male body		 SRR553488
RT_0-2 hours eggs
 GSM343915
embryo
 SRR553487
NRT_0-2 hours eggs
..ATCGGGCTTTAAACAAAAAC.............................................................................................................................................................................................................................................................................................................................. 20 0 1 2.00 2 2 0 0 0 0 0
........................................................................................................................................................................TCTCTAATGGCGTGATGGACG....................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0
................................................................GGCCTAGCTCGTAATTTTGGA............................................................................................................................................................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0
GTATCGGGCTTTAAACAAAAA............................................................................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0
............................................................................................................................................................................................................................GCGGTGTCCTGGACTATATTA................................................................................................... 21 3 1 1.00 1 0 1 0 0 0 0
.................................................................................................................................................GGTGTATAGAGGTCAAAATCT.............................................................................................................................................................................. 21 3 4 0.50 2 2 0 0 0 0 0
.............................................................................................................................CGTAATACCTTGCAATTCT.................................................................................................................................................................................................... 19 2 2 0.50 1 0 0 0 0 1 0
...........................................................................................................................................................................CCAATCGCGTGATGGAAGC...................................................................................................................................................... 19 3 6 0.50 3 0 0 0 3 0 0
.........................................ATAACTTTTCACTCGTTTAT....................................................................................................................................................................................................................................................................................... 20 2 4 0.25 1 0 0 0 0 0 1
....................................................................................................................................................................................................................................................................AAAACATGACTGGATACAT............................................................. 19 2 5 0.20 1 0 0 0 1 0 0
.........................................................................CCTAATCTTGGATGCT........................................................................................................................................................................................................................................................... 16 2 20 0.10 2 0 0 0 2 0 0
.......................................................................................................................................................................................TTGACGTATCGAGGACA............................................................................................................................................ 17 2 11 0.09 1 0 1 0 0 0 0
.........................................................................................................................................................................................................................................................................................AGAAAAGTCTTACTG............................................ 15 1 11 0.09 1 0 0 0 1 0 0
.........................................................................................................................................................................................................................TTAACGGTAACCAAGTCTATA...................................................................................................... 21 3 11 0.09 1 1 0 0 0 0 0
................................................................................................................................................................................................................................................................................................TCTTAGTGGCGTCACTAGG................................. 19 3 15 0.07 1 0 0 0 0 1 0
........................................................................TCCTAAGTTTGGATGCT........................................................................................................................................................................................................................................................... 17 2 19 0.05 1 0 0 0 1 0 0
.............................................................................................................................................................................AATCGCGTGATGGAAGCC..................................................................................................................................................... 18 3 20 0.05 1 0 0 0 1 0 0

Generated: 04/23/2015 at 06:47 PM