ID:

dsi_15914

Coordinate:

3l:16498246-16498395 +

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

-30.3	-29.9	-29.7

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

TGCCCAGTTTGCGTCCCGCTGCGATGGCTGCGGCGAAGTTTTCCGCGCAGGTAAGCTAAATTCGGGGGAAACTGTGTGAAAATCGTGGCATACTTGCGGGCGGAGACAGAGTAATGGCAGCACTAAAGTGAAATTATTGCCATGAGAATCTCGGAATTCAAGTTCTTGTTGTTACCGTTAAGGATGGCTAATTGTTACCGCTTAATGGAGTTTCTAAGGAGCCGGGAGTTGGTCCAGAAACTGGTTCGGT ************************************************...((((((((((.((((..(((.(((.....((((.(((....)))..))))..))).))).((((((((((....)))......))))))).....)))).)))))....((((((.((....)).)))))))))))...........************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553486 Makindu_3 day-old ovaries	M053 female body	O002 Head	SRR553485 Chicharo_3 day-old ovaries	SRR618934 dsim w501 ovaries	SRR553488 RT_0-2 hours eggs	M024 male body
..................................................................................................................................................AATCTCGGAATTCAAGTT......................................................................................	18	0	1	1.00	1	0	0	1	0	0	0	0
.............................................................................................................................................................................................................TGGAGTTTCTAAGGAGCCGGGAGTTG...................	26	0	1	1.00	1	0	1	0	0	0	0	0
......................................................................................................................................................................................................CGCTGAATGGAGTTTCTAAGGAGC............................	24	1	1	1.00	1	1	0	0	0	0	0	0
....................................................................................................................................................................................................................TCTAAGGAGCCGTGA.......................	15	1	2	0.50	1	0	0	0	1	0	0	0
..............................................................................................................GTTATGGCAGCACTAA............................................................................................................................	16	1	4	0.25	1	0	0	0	0	1	0	0
...................................................................................CGTAGGATACTTGCGGG......................................................................................................................................................	17	2	6	0.17	1	0	0	0	0	0	1	0
..................................................................................................................................AAATTGTTGCCAGGAGTATC....................................................................................................	20	3	7	0.14	1	0	0	0	0	1	0	0
....................................................................................................................................................TCTCGGAATTTAAGATCTTTT.................................................................................	21	3	7	0.14	1	0	0	0	1	0	0	0
.......................................................................................................................................................................................................................AAGGAGCTGGGACTTTGTCC...............	20	3	12	0.08	1	0	0	0	0	0	0	1
.................................................................GAGAAACTGTGTGAA..........................................................................................................................................................................	15	1	20	0.05	1	1	0	0	0	0	0	0
..................................................................................GCGTAGGATACTTGCGGG......................................................................................................................................................	18	3	20	0.05	1	0	0	0	0	0	1	0
....................................................................................................................................................................................................................ACTAAGGGGTCGGGAGTT....................	18	3	20	0.05	1	1	0	0	0	0	0	0

Anti-sense strand reads

ACGGGTCAAACGCAGGGCGACGCTACCGACGCCGCTTCAAAAGGCGCGTCCATTCGATTTAAGCCCCCTTTGACACACTTTTAGCACCGTATGAACGCCCGCCTCTGTCTCATTACCGTCGTGATTTCACTTTAATAACGGTACTCTTAGAGCCTTAAGTTCAAGAACAACAATGGCAATTCCTACCGATTAACAATGGCGAATTACCTCAAAGATTCCTCGGCCCTCAACCAGGTCTTTGACCAAGCCA ************************************************...((((((((((.((((..(((.(((.....((((.(((....)))..))))..))).))).((((((((((....)))......))))))).....)))).)))))....((((((.((....)).)))))))))))...........************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M025 embryo	M024 male body	SRR553485 Chicharo_3 day-old ovaries	M023 head	SRR553486 Makindu_3 day-old ovaries	SRR553488 RT_0-2 hours eggs
.....................................................................................................................................................GACCCTTAAGTTCAAGTACAC................................................................................	21	3	4	0.25	1	1	0	0	0	0	0
....................................................................................................................................................CGACCCTTAAGTTCAAGTACA.................................................................................	21	3	10	0.10	1	0	1	0	0	0	0
........................................................................................................................................................CCTTAAGTTCAAGTACAC................................................................................	18	2	20	0.10	2	0	1	0	1	0	0
...........................................................................................................................................................................................................TTACCTCCAAGATTGCTCT............................	19	3	11	0.09	1	0	1	0	0	0	0
......................................................................................................................................................ACCCTTAAGTTCAAGTACAC................................................................................	20	3	19	0.05	1	0	0	1	0	0	0
..........................................................................................................................................................TTAAGTTCAAGTACA.................................................................................	15	1	20	0.05	1	0	0	0	0	1	0
..............................................................................................................................TCACTTTAATCACGGTT...........................................................................................................	17	2	20	0.05	1	0	0	0	0	0	1

Generated: 04/24/2015 at 05:06 AM