ID:

dsi_15911

 Coordinate:

3l:20050098-20050247 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

exon [3l_20050248_20050415_+]; five_prime_UTR [3l_20050248_20050375_+]; intron [3l_20047044_20050247_+]

No Repeatable elements found

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
GGCCACAAACATAATGCAAAGGCCACAAACAAGGTCCACTGGTTATTAGGTCAATTATTTAAATATTAAAGGTTTACTTTATATTTAACAGGGTTTTTTAAAAACTATAGAAAAAACTGTTATTTTCTAAATCAAATGTTTTTATTCAGTCTGGCAGCCTTGCTCCACGGTAGTTTTTGGTATCAACCTGTCAATTCTAGTATATTCCAATTGCAACGCCACGGTCACACTGTCGTGGGGCAAAATAAAA
**************************************************.........(((((((.((((.....)))))))))))(((((.....(((((((((((((((((........)))))))......................(((.(((...))))))...))))))))))......))))).........************************************************** 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 M023
head
 SRR553488
RT_0-2 hours eggs
 M024
male body		 M053
female body
 GSM343915
embryo
 SRR902009
testis
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
..............................................................................................................................................................................................................................GGTCACACTGTCGTGGGGC......... 19 0 1 4.00 4 2 1 0 1 0 0 0 0 0 0
...............................................................................................................................................................................................................................GTCACACTGTCGTGGGGC......... 18 0 1 3.00 3 2 1 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................CGGTCACACTGTCGTGGGGC......... 20 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................GGTCACACTGTCGTGGGAC......... 19 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................GCAACGCCACGGTCACACTGTCGTGGGGC......... 29 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................GGTCACACTGTCGTGGGGCA........ 20 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
...........................................................................................................................................................................................................................CACGGTCACACTGTCGTGGG........... 20 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
..............................AAGGTCCACTTGTTATGAGGTTAAT................................................................................................................................................................................................... 25 3 1 1.00 1 0 0 1 0 0 0 0 0 0 0
...................................................................................TTTATCGGGGTTTTTTAAAA................................................................................................................................................... 20 2 3 0.33 1 0 0 1 0 0 0 0 0 0 0
...............................................................................................................................................ATTCAGTCAGACAGCCTTGCC...................................................................................... 21 3 3 0.33 1 0 1 0 0 0 0 0 0 0 0
...................................................................................................................................TTAAATGTTTTGATTCAGTCGG................................................................................................. 22 3 6 0.17 1 0 0 0 0 0 0 1 0 0 0
.....................................................................................................................................................................CACGGTAGTTTTTCG...................................................................... 15 1 6 0.17 1 0 0 0 0 0 0 0 1 0 0
.....................................................................................................................................AAATGTTTTGATTCAGTCGGC................................................................................................ 21 3 9 0.11 1 0 0 0 0 0 0 1 0 0 0
...................................................................................................................................................................................................................TCCGACGCCACGGTCAGACT................... 20 3 14 0.07 1 0 0 0 0 0 0 0 0 1 0
......................................................................................................AAGTATAGAAAAAACT.................................................................................................................................... 16 1 17 0.06 1 0 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

CCGGTGTTTGTATTACGTTTCCGGTGTTTGTTCCAGGTGACCAATAATCCAGTTAATAAATTTATAATTTCCAAATGAAATATAAATTGTCCCAAAAAATTTTTGATATCTTTTTTGACAATAAAAGATTTAGTTTACAAAAATAAGTCAGACCGTCGGAACGAGGTGCCATCAAAAACCATAGTTGGACAGTTAAGATCATATAAGGTTAACGTTGCGGTGCCAGTGTGACAGCACCCCGTTTTATTTT
**************************************************.........(((((((.((((.....)))))))))))(((((.....(((((((((((((((((........)))))))......................(((.(((...))))))...))))))))))......))))).........************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 GSM343915
embryo
 SRR553488
RT_0-2 hours eggs
 SRR902009
testis
 SRR553485
Chicharo_3 day-old ovaries
 M053
female body
 SRR618934
dsim w501 ovaries
 M024
male body
....................................................................................................................................................................................ATAGTTAGACAGTTAGGA.................................................... 18 2 7 1.29 9 0 6 0 3 0 0 0 0 0
....................................................................................................................................................................................................................CGTTGCGGTGCCAGTGTGA................... 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0
.........................GTTTGTTCCAGGTGA.................................................................................................................................................................................................................. 15 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................TAGTTAGACAGTTAGGATCAA................................................ 21 3 4 0.50 2 1 0 0 0 0 1 0 0 0
.............................................................................................AAAAAATTCTAGATCTCTTTT........................................................................................................................................ 21 3 20 0.35 7 0 0 0 0 7 0 0 0 0
.....................................................................................................................................................................................TAGTTAGACAGTTAGGATC.................................................. 19 2 4 0.25 1 0 0 0 1 0 0 0 0 0
..............................................................................................AAAAATTTTTCATATCTT.......................................................................................................................................... 18 1 6 0.17 1 0 1 0 0 0 0 0 0 0
....................................................................................................................................................................................ATAGTTAGACAGTTAGGAC................................................... 19 3 20 0.15 3 0 2 0 1 0 0 0 0 0
.....................................................TAATAAATTTATAATGTC................................................................................................................................................................................... 18 1 7 0.14 1 0 0 0 0 0 0 1 0 0
........................................................................................................................................................ACGACGGAACGAAGTGCCA............................................................................... 19 3 17 0.12 2 0 0 0 0 0 0 0 2 0
....................................................................................................................................................................................AGAGTTGGACAGTTAGGAA................................................... 19 3 18 0.06 1 0 0 0 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3l:20050048-20050297 + dsi_15911 GGCCACAAACATA-----------------------------ATGCAAAGGCCACAAAC----------------------------------------------------A---------------AGGTCCACTGGTTATTAGGTCAATTAT---------TTAAATATT-----AAAGGTT-TACTTTATATTT----------------------------------------------------------------------------------------------------------------------------------------------------AACAGGGTTTTTTAAAAA-------C----TAT--AG--AAAAAACTGTTATTTTCTA--------AATC-------AAATGTTTTTATTCAGTCTGGCAGCCTTGCTCCACGG-------T-------------------------------------------AG------------------------------------TTTTTGGTATCAACCTGTCA----ATTCTAGTATATTCCAATT------GCAAC-----GCCACGGTCACA--------CTGTCGTGGG------GCAA-------------A-ATAAAA
droSec2 scaffold_11:378827-379081 + AATT------------------------GAAATATGTTTTGTATGCAATGGCCACAAAC----------------------------------------------------A---------------AGCTCCACTGGTTATGAGGTCAATTAT---------TTACCTATT-----AAAGGTT-AACTTTATATTT----------------------------------------------------------------------------------------------------------------------------------------------------AACGGGGTGTTTTAAAAA-------C----TAT--AG--AAATAACTGTTACTTTCCA--------AATC-------AAATGTTTTTCTTCAGTCTGGCAGCCTTGTTCCACTG-------T-------------------------------------------AG------------------------------------TTTTTGGTATCAACCTGTCA----ATTCTATTATATTCCATTT------GCAAC-----GCCACGGTCACA--------CTGTCGTGGG------GCAA-------------A-ATAAAA
dm3 chr3L:20488248-20488501 + AATT------------------------AAAATATGTTTGGTATGCAATGGCCACGAAC----------------------------------------------------A---------------CGGTCTATTGGTTATGAGGTCAATTAT---------TTACATATT-----TAGGGTT-AACTTTAGGT-T----------------------------------------------------------------------------------------------------------------------------------------------------AACAGGGCTTTTTAAAAA-------C----TAT--AG--AAAAAACTGTTACTTTCCA--------AATC-------AAATGTTTTTCTTCAGTCTGGCAGCTTTGTTTGACGG-------T-------------------------------------------AG------------------------------------TTTTTGATATCAACCTGTCA----ATTCTAGTATATTCCAATT------GCTAC-----GCCACGGTCACA--------CTGTCGTGGG------GCAA-------------A-ATAAAA
droEre2 scaffold_4784:20181359-20181628 + AATTTAAAAGGTG-----AGCGATAATTAAAACATCTTTTACATGCGATGCATACAAAC----------------------------------------------------A---------------AGATCTACTGGTTATGAGGTCAATTAT---------ATACATATT-----AAAAGTA-ATCTTCTTAT-------------------------------------------------------------------------------------------------------------------------------------------------------ACAAGTTAATTTAAAAC-------C----CAA--AC--AAAAAACTGTTACTTTCCA--------AGTC-------A-ATTTTTTTCTTTAGTCTGGCAGCCTTGTTCCATGG-------T-------------------------------------------AG------------------------------------TTTTTGGTATTAACTTGTCA----ATTCTAGTATATTCCATTT------GCAAC-----GCCGTGGTCACA--------CTGTCGTGGG------GCAA-------------A-ATAAAA
droYak3 v2_chr3L_random_235:11585-11836 + AATT------------------------AAAACATGTTCTATATGCAATACCTACAAAC----------------------------------------------------A---------------AGATCTACTGATAATGAGGTATATAAT---------ATATATATT-----AAAAGTA-ATCTTTTAAT-------------------------------------------------------------------------------------------------------------------------------------------------------AAAAGATTTTTTAAAAA-------C----TAT--AC--AAAAAACTGTTACTTTCAA--------AGTC-------AATTGTTTTTCCTCAATCCGGCAGCCTTGTTCCACGG-------A-------------------------------------------AG------------------------------------TTTTTGGTATTAACCTGGCA----GCTCTAGTATATTCCATGT------GCAAC-----GCCGTGGTCACA--------CTGTCGTAGG------GCAA-------------A-ATAAAA
droEug1 scf7180000409711:5502786-5503076 - CATAAGTAAA------------------------ATTAACA-TTGAATTATCTATCAAA---------GCT--------------GACAA-----CCTAATTTAAATAAGCA---------------AATTACAGTAACCACAAGATTAAAAAT---------TAATGTTTT-----TCA---------GTACATTT--CTAGTAATTTTA-----------------------------------------------------------------------------------------------------------------------A--------------AAGGAAATGTTTTAGAAA-------T----GAT--AACAAAAAATTCGTTTTATTTTA--------AATT-------TATTAACTTTCTTCAGTCTGGCAGCCTTGTGTCACTATTCGATAT-------------------------------------------AGTTTAC----------------------AATA--TC-TTTTTAGTATTAT-----------ATGCCAAAACATTTTAATG------TTCGC-----GAAGCGGTCACA--------CTGGCTTTGA------GCAA-------------A------A
droBia1 scf7180000302193:5576131-5576475 - TATAACGCAAATAAAGTA----------AAAAGTTTAAAAGTTTGTGTTTTCCTTTAAA---------ACGATAGACAATTAGAGGACCAAATATTTTTATTTAAAGAAGTCAGATTGTAAACAGTTTGTTACATAAAATA---------------------------------------------------CATTCTGCAAAA--------------------------------------------------------------------------------------------------------------------TTTATTTATTTCCACAAAAGT--------------TTTTAAATTTGAAAAC--AAGGTAGAA--AAAATATCGTTACTTTTCA--------AGTC-------ATATAATTTTCTGCAGTCTGGCAGCACTATCCGAT----------------TGCCAAC--------AC--GTCACTCTTTTTTATGGTA---C-------------------------------A-TTTTCGGTATTACATATAAA----ACTTTGGTATATTTTAATG------GTCGA-----GAAGGGGTCACA--------CTGGCTGGGA------GCAA-------------A-TTAAAT
droTak1 scf7180000415254:179674-179920 - ACAT------------------------ATAT---ATTTTTTTT-----------------------------------------------------------------------------------------------------------------------TCTAAATTT-----AAAGAAT-TACAGAACATTCTACAAGACATTTTGAAAAAC----------------------------------------------------------------------------------------------------------------------GAAAGT--------------TTTTAAAA-------T----A-A--A-CAAAAAGATCGTTACTTTTTT--------------------TACATTTCCCCTCTGTCTGGCATCCCTGTTCAAT----------------T-GACAA--------AC--GACACTCTTATTTCTAGTAT------------------------------------TTTTCGGTATTTAACAGCTG----ACTGCGGTATATTTTAATG------GTTGAGGCGAGGCGCGGTCACA--------CTAACTTGGA------GCAA-------------A-A-AATA
droEle1 scf7180000491193:4821901-4822115 + TTTTAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT----------------------------------------------------------------------------------------------------------------------------------------------------AAAAGATC---------------------AATCTG--AAAATTGTTCGTTATTTTTCA--------AATC-------CGATCTTGTTCAAAAGTCTGGCAACCGCGCTCTTCTC--------TACATTT-GACATGTAGACACTCTTGACACTCTTATTTTTGGTA---TATT------------------AATTAAA--TG-TTTTTAGTATTA-CTTGTCACCACACTACGGTATATTTTAATG------GTTGA-----GACGCGGTCACA--------CTGGTTTGGA------GCAA-------------A------A
droRho1 scf7180000777448:30900-31156 + TAAT------------------------AAAT---GTTTAATTT--------------------------------------------------------------------------------------------------------------TTAACCACA-------------------------------------------TTTTTGATAACGAACATAAATAT----------------------------------------------------------------------------------------------------------------------------------------------------------TAAAAGCTCGTTATTTTTCA--------AATC-------GGATCTTTTTCCAAAGTATGGCAGCCCG-TTTTATTC--------TACATTT-GACAT--------AC--GAGCCGCTTTTCTGTGGTA---TGCTTGTACTTTATCATGAGTTGTTCTAGTATATTTTTGAAAGCCAAAGTGTTACCATGCTACGGTATGTTTTAATG------GATGA-----GACGCGGTCACA--------CTGGCTTGGA------GCAA-------------A-ACTGCA
droFic1 scf7180000454113:1841920-1842191 - AGTAGTAAATGGG-----------------------------TACTAAAACTAACAAACAACAAATTT--------------------------------------------------------------------------------------TTAAATACA-------TT-----AAAGAAA-TGCACAA-------------------------------------------------------------------------------------------------------------------------------------------------TTGTTTTTAACA----TTTTAAGAAA-------T---AATTTC--CAAAAAGTCCGTTACTTTTCA--------AACT-------CTATTATGCACCACAGTATGGCAACACCGCTTTACTT--------TACATTT-GACAT--------AT--------------TATGTTA---TGTTTTAATTTT----------TATTAAGTATA-TTCTAGGTA---AATGGTCACCCTACTGGGGTATATTTCGATG------GTCTA-----GACACGGTCGCA--------CTGGCTTGGA------GCAA-------------A------A
droKik1 scf7180000302441:3207807-3208080 + AGGAACCAATAAA-----------------------------GCCTA------------------------------------------------------------------------------------------------------------------------------AATATAAGGTACTAAATAA----------------------------------------------------------------------------------AACAAATTA-AAAAAATTATGATGTTTA-ATAAATGCTCTATTCAATTGATTTTTAATAG-----------AATATGATTTTTAAGAAA-------CATCAAGTTC---AAATAATACGTTACTTTGGT--------G--CTGCCACCCTTGCTGTTCCGGAAGTCTGGCAGCGCTGATTGTCGT--------GACATTT-GCCAG--------TC--A-------------------------------------------------------------------------CA----GCGGTGACATTTACCATTCACAGCGGTCGTGACCATTCGCAGGCACCGTT--------TTCATCT------GCAG-------------A-AGACGA
droAna3 scaffold_13337:10846314-10846596 + ATTT------------------------AAAAACTATTTCA-TCAAATGTTCT---------------------------------------------------------------------------------------------------------------------------------------------------------------TCAAAGAGTTTAAATGCCAAAAATTAACTTCTAATGTGCCATAATATAGGATTCACTTATTAATGTTTTTATAATAAGCTATGTATTTTT-ACATATTTTCTTTTT-ATTAATT-TAAACTT-----------AATAAACTATTTAAATTC-------GTTACAATTC---AAATAGT-TGCCACTTGGTTGCAATTAGA---TGGCAACGCCAATAATGCAAAAGACT---------------------------------------------------------------------------------------------------------------------------GGCA----ACGCCCGAAAGTGACATTG------GC-------------AGGCACTGTT-------TTCATCTG------GCGT-------------A-GAAGAA
droBip1 scf7180000396569:533047-533291 - CTTT------------------------TAAT-ATCTTT---CAACAATTTTATCAATC----------------------------------------------------A-----------------------------AAAGATTTAGTTA---------AT----ATTAAGTTTAAAGTAATATATAA-GT-T------ATAATTTGGAAA------ATAA----------------------------------------------------AAATTA-AAGTAATTCTTGTATTTATTCAAATTTT-----------------------------------------------ATTC-------GTTACATTTC---AAATAGT-TGCCACTTAGTTGCATTTATA---TGGCAACGCTTCCAATGCGAAACTCT---------------------------------------------------------------------------------------------------------------------------GGCA----GCGCTAAAAAGTGACATTT------GCA-------------GGCACTGTTTTCATCTGTCGTAGA---------------------------AGAA
dp5 XR_group8:7897006-7897105 + ACG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G-------T-------------------------------------------AT------------------------------------ATTTCGGTACATTTCTGGGG----GTCGGACCGTATT---TTT------ATAAA-----TCCGCGGTCACA--------CTGCAGACCGTACTTGTCAAGAAAAAATTTAACA-ATAAAA
droPer2 scaffold_40:86717-86781 + GTATA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTT------ATAAA-----TCCGCGGTCACA--------CTGCAGGCCGTACTTGTCAAGAAAAAATTTAACA-ATAAAA
droVir3 scaffold_13049:18854560-18854705 - AAAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGAATTCTTTA--------AACT-------AATACAACTTATACAATCTGGCAGCACTGTCTACTAC--------TGTCATC-GATTAGTCGACCGAC--TACAACTTTAA----------------------------------------------------------------------GTTTGG--TATTTCGATG------TCAGA-----AAGTTGGTCACA--------CTGGCCTGCT------GCTG-------------ACATCTAA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
GGCCACAAACATA-----------------------------ATGCAAAGGCCACAAAC----------------------------------------------------A---------------AGGTCCACTGGTTATTAGGTCAATTAT---------TTAAATATT-----AAAGGTT-TACTTTATATTT----------------------------------------------------------------------------------------------------------------------------------------------------AACAGGGTTTTTTAAAAA-------C----TAT--AG--AAAAAACTGTTATTTTCTA--------AATC-------AAATGTTTTTATTCAGTCTGGCAGCCTTGCTCCACGG-------T-------------------------------------------AG------------------------------------TTTTTGGTATCAACCTGTCA----ATTCTAGTATATTCCAATT------GCAAC-----GCCACGGTCACA--------CTGTCGTGGG------GCAA-------------A-ATAAAASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCACA--------CTGTCGTGGG------GC.......................1914.00411200000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCACA--------CTGTCGTGGG------GC.......................1813.00310200000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGTCACA--------CTGTCGTGGG------GC.......................2013.00300300000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAC-----GCCACGGTCACA--------CTGTCGTGGG------GC.......................2911.00100100000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCACA--------CTGTCGTGGG------GCA......................2011.00100010000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACGGTCACA--------CTGTCGTGGG------.........................2011.00100000000000100000
droSec2
AATT------------------------GAAATATGTTTTGTATGCAATGGCCACAAAC----------------------------------------------------A---------------AGCTCCACTGGTTATGAGGTCAATTAT---------TTACCTATT-----AAAGGTT-AACTTTATATTT----------------------------------------------------------------------------------------------------------------------------------------------------AACGGGGTGTTTTAAAAA-------C----TAT--AG--AAATAACTGTTACTTTCCA--------AATC-------AAATGTTTTTCTTCAGTCTGGCAGCCTTGTTCCACTG-------T-------------------------------------------AG------------------------------------TTTTTGGTATCAACCTGTCA----ATTCTATTATATTCCATTT------GCAAC-----GCCACGGTCACA--------CTGTCGTGGG------GCAA-------------A-ATAAAASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCACA--------CTGTCGTGGG------G........................1812.0020020
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCGTGGG------GCAA-------------A-ATAAAA2011.0010100
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAC-----GCCACGGTCACA--------CTGTCGT..................................2211.0010010
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACGGTCACA--------CTGTCGTGGG------GCAA-------------A-AT....2711.0010010
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGGTCACA--------CTGTCGTGGG------GCA......................2211.0010100
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAC-----GCCACGGTCACA--------CTGTCGT..................................2411.0010010
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCGTGGG------GCAA-------------A-ATAA..1811.0010001
dm3
AATT------------------------AAAATATGTTTGGTATGCAATGGCCACGAAC----------------------------------------------------A---------------CGGTCTATTGGTTATGAGGTCAATTAT---------TTACATATT-----TAGGGTT-AACTTTAGGT-T----------------------------------------------------------------------------------------------------------------------------------------------------AACAGGGCTTTTTAAAAA-------C----TAT--AG--AAAAAACTGTTACTTTCCA--------AATC-------AAATGTTTTTCTTCAGTCTGGCAGCTTTGTTTGACGG-------T-------------------------------------------AG------------------------------------TTTTTGATATCAACCTGTCA----ATTCTAGTATATTCCAATT------GCTAC-----GCCACGGTCACA--------CTGTCGTGGG------GCAA-------------A-ATAAAASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCACA--------CTGTCGTGGG------G........................1819.0090000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000050000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGTCACA--------CTGTCGTGGG------GCAA-------------A-......2313.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGTCACA--------CTGTCGTGGG------GCA......................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACGGTCACA--------CTGTCGTGGG------GC.......................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACGGTCACA--------CTGTCGTGGG------G........................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000100000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGGTCACA--------CTGTCGTGGG------GCAA-------------A-AT....2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGGTCACA--------CTGTCGTGGG------GC.......................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTGGG------GCAA-------------A-ATAAAA1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATT------GCTAC-----GCCACGGTC....................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGTGGG------GCAA-------------A-ATAAAA1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T------GCTAC-----GCCACGGTCACA--------.........................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAC-----GCCACGGTCACA--------CTGTCGT..................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCGTGGG------GCAA-------------A-ATAAAA2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGGTCACA--------CTGTCGTGGG------GCA......................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACA--------CTGTCGTGGG------GCAA-------------A-AT....2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AC-----GCCACGGTCACA--------CTGTCGT..................................2111.0010000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACA--------CTGTCGTGGG------GCAA-------------A-ATAA..2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACA--------CTGTCGTGGG------GCAA-------------........1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATT------GCTAC-----GCCACGGTCACA--------CTGTC....................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATT------GCTAC-----GCCACGGTCACA--------CT.......................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATT------GCTAC-----GCCACGGTCACA--------CTG......................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAATT------GCTAC-----GCCACGGTCACA--------C........................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCACA--------CTGTCGTGGG------GCA......................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTTTGACGG-------T-------------------------------------------AG------------------------------------TTTTTGA.................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGTGGG------GCAA-------------A-ATAAA.1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATT------GCTAC-----GCCACGGTCACA--------C........................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGGTCACA--------CTGTCGTGGG------GCAA-------------........2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C-----GCCACGGTCACA--------CTGTCGTGGG------GC.......................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAC-----GCCACGGTCACA--------CTGTCGTG.................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGTCACA--------CTGTCGTGGG------GC.......................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATT------GCTAC-----GCCACGGTCACA--------CTGTC....................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T------GCTAC-----GCCACGGTCACA--------CT.......................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCGTGGG------GCAA-------------A-ATAA..1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACA--------CTGTCGTGGG------GCAA-------------A-ATA...2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACA--------CTGTCGTGGG------GCAA-------------A-......1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T------GCTAC-----GCCACGGTCACA--------C........................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT------GCTAC-----GCCACGGTCACA--------CTGTCGT..................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT------GCTAC-----GCCACGGTCACA--------C........................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACGGTCACA--------CTGTCGTGGG------.........................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTCGTGGG------GCAA-------------A-ATAAA.2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AC-----GCCACGGTCACA--------CTGTC....................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACGGTCACA--------CTGTCGTGAT------C........................2140.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
AATTTAAAAGGTG-----AGCGATAATTAAAACATCTTTTACATGCGATGCATACAAAC----------------------------------------------------A---------------AGATCTACTGGTTATGAGGTCAATTAT---------ATACATATT-----AAAAGTA-ATCTTCTTAT-------------------------------------------------------------------------------------------------------------------------------------------------------ACAAGTTAATTTAAAAC-------C----CAA--AC--AAAAAACTGTTACTTTCCA--------AGTC-------A-ATTTTTTTCTTTAGTCTGGCAGCCTTGTTCCATGG-------T-------------------------------------------AG------------------------------------TTTTTGGTATTAACTTGTCA----ATTCTAGTATATTCCATTT------GCAAC-----GCCGTGGTCACA--------CTGTCGTGGG------GCAA-------------A-ATAAAASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AC-----GCCGTGGTCACA--------CTGTCGTGGG------GCA......................2711.0010000100
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTCACA--------CTGTCGTGGG------GC.......................2011.0011000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACA--------CTGTCGTGGG------GCAA-------------........1811.0011000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T------GCAAC-----GCCGTGGTCACA--------CTGTCGT..................................2511.0011000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATATTCCATTT------GCAAC-----GC...........................................................2011.0010100000
droYak3
AATT------------------------AAAACATGTTCTATATGCAATACCTACAAAC----------------------------------------------------A---------------AGATCTACTGATAATGAGGTATATAAT---------ATATATATT-----AAAAGTA-ATCTTTTAAT-------------------------------------------------------------------------------------------------------------------------------------------------------AAAAGATTTTTTAAAAA-------C----TAT--AC--AAAAAACTGTTACTTTCAA--------AGTC-------AATTGTTTTTCCTCAATCCGGCAGCCTTGTTCCACGG-------A-------------------------------------------AG------------------------------------TTTTTGGTATTAACCTGGCA----GCTCTAGTATATTCCATGT------GCAAC-----GCCGTGGTCACA--------CTGTCGTAGG------GCAA-------------A-ATAAAASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCACA--------CTGTCGTAGG------GC.......................1921.00200100010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C-----GCCGTGGTCACA--------CTGTCGTAGG------GC.......................2520.50100000010000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCACA--------CTGTCGTAGG------GCAA-------------........2120.50101000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCACA--------CTGTCGTAGG------GCA......................1820.50101000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTGGTCACA--------CTGTCGTAGG------G........................2120.50100000010000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCCATGT------GCAAC-----GCCGT........................................................1920.50101000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCACA--------CTGTCGTAGG------GC.......................1820.50110000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGTGGTCACA--------CTGTCGTA.................................2020.50100100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAC-----GCCGTGGTCACA--------CTGTCGTAGG------GC.......................2920.50100100000000
droEug1
CATAAGTAAA------------------------ATTAACA-TTGAATTATCTATCAAA---------GCT--------------GACAA-----CCTAATTTAAATAAGCA---------------AATTACAGTAACCACAAGATTAAAAAT---------TAATGTTTT-----TCA---------GTACATTT--CTAGTAATTTTA-----------------------------------------------------------------------------------------------------------------------A--------------AAGGAAATGTTTTAGAAA-------T----GAT--AACAAAAAATTCGTTTTATTTTA--------AATT-------TATTAACTTTCTTCAGTCTGGCAGCCTTGTGTCACTATTCGATAT-------------------------------------------AGTTTAC----------------------AATA--TC-TTTTTAGTATTAT-----------ATGCCAAAACATTTTAATG------TTCGC-----GAAGCGGTCACA--------CTGGCTTTGA------GCAA-------------A------ASizeHit CountTotal NormTotal
No Reads
droBia1
TATAACGCAAATAAAGTA----------AAAAGTTTAAAAGTTTGTGTTTTCCTTTAAA---------ACGATAGACAATTAGAGGACCAAATATTTTTATTTAAAGAAGTCAGATTGTAAACAGTTTGTTACATAAAATA---------------------------------------------------CATTCTGCAAAA--------------------------------------------------------------------------------------------------------------------TTTATTTATTTCCACAAAAGT--------------TTTTAAATTTGAAAAC--AAGGTAGAA--AAAATATCGTTACTTTTCA--------AGTC-------ATATAATTTTCTGCAGTCTGGCAGCACTATCCGAT----------------TGCCAAC--------AC--GTCACTCTTTTTTATGGTA---C-------------------------------A-TTTTCGGTATTACATATAAA----ACTTTGGTATATTTTAATG------GTCGA-----GAAGGGGTCACA--------CTGGCTGGGA------GCAA-------------A-TTAAATSizeHit CountTotal NormTotal
No Reads
droTak1
ACAT------------------------ATAT---ATTTTTTTT-----------------------------------------------------------------------------------------------------------------------TCTAAATTT-----AAAGAAT-TACAGAACATTCTACAAGACATTTTGAAAAAC----------------------------------------------------------------------------------------------------------------------GAAAGT--------------TTTTAAAA-------T----A-A--A-CAAAAAGATCGTTACTTTTTT--------------------TACATTTCCCCTCTGTCTGGCATCCCTGTTCAAT----------------T-GACAA--------AC--GACACTCTTATTTCTAGTAT------------------------------------TTTTCGGTATTTAACAGCTG----ACTGCGGTATATTTTAATG------GTTGAGGCGAGGCGCGGTCACA--------CTAACTTGGA------GCAA-------------A-A-AATASizeHit CountTotal NormTotal
No Reads
droEle1
TTTTAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT----------------------------------------------------------------------------------------------------------------------------------------------------AAAAGATC---------------------AATCTG--AAAATTGTTCGTTATTTTTCA--------AATC-------CGATCTTGTTCAAAAGTCTGGCAACCGCGCTCTTCTC--------TACATTT-GACATGTAGACACTCTTGACACTCTTATTTTTGGTA---TATT------------------AATTAAA--TG-TTTTTAGTATTA-CTTGTCACCACACTACGGTATATTTTAATG------GTTGA-----GACGCGGTCACA--------CTGGTTTGGA------GCAA-------------A------ASizeHit CountTotal NormTotal
No Reads
droRho1
TAAT------------------------AAAT---GTTTAATTT--------------------------------------------------------------------------------------------------------------TTAACCACA-------------------------------------------TTTTTGATAACGAACATAAATAT----------------------------------------------------------------------------------------------------------------------------------------------------------TAAAAGCTCGTTATTTTTCA--------AATC-------GGATCTTTTTCCAAAGTATGGCAGCCCG-TTTTATTC--------TACATTT-GACAT--------AC--GAGCCGCTTTTCTGTGGTA---TGCTTGTACTTTATCATGAGTTGTTCTAGTATATTTTTGAAAGCCAAAGTGTTACCATGCTACGGTATGTTTTAATG------GATGA-----GACGCGGTCACA--------CTGGCTTGGA------GCAA-------------A-ACTGCASizeHit CountTotal NormTotal
No Reads
droFic1
AGTAGTAAATGGG-----------------------------TACTAAAACTAACAAACAACAAATTT--------------------------------------------------------------------------------------TTAAATACA-------TT-----AAAGAAA-TGCACAA-------------------------------------------------------------------------------------------------------------------------------------------------TTGTTTTTAACA----TTTTAAGAAA-------T---AATTTC--CAAAAAGTCCGTTACTTTTCA--------AACT-------CTATTATGCACCACAGTATGGCAACACCGCTTTACTT--------TACATTT-GACAT--------AT--------------TATGTTA---TGTTTTAATTTT----------TATTAAGTATA-TTCTAGGTA---AATGGTCACCCTACTGGGGTATATTTCGATG------GTCTA-----GACACGGTCGCA--------CTGGCTTGGA------GCAA-------------A------ASizeHit CountTotal NormTotal
No Reads
droKik1
AGGAACCAATAAA-----------------------------GCCTA------------------------------------------------------------------------------------------------------------------------------AATATAAGGTACTAAATAA----------------------------------------------------------------------------------AACAAATTA-AAAAAATTATGATGTTTA-ATAAATGCTCTATTCAATTGATTTTTAATAG-----------AATATGATTTTTAAGAAA-------CATCAAGTTC---AAATAATACGTTACTTTGGT--------G--CTGCCACCCTTGCTGTTCCGGAAGTCTGGCAGCGCTGATTGTCGT--------GACATTT-GCCAG--------TC--A-------------------------------------------------------------------------CA----GCGGTGACATTTACCATTCACAGCGGTCGTGACCATTCGCAGGCACCGTT--------TTCATCT------GCAG-------------A-AGACGASizeHit CountTotal NormTotal
No Reads
droAna3
ATTT------------------------AAAAACTATTTCA-TCAAATGTTCT---------------------------------------------------------------------------------------------------------------------------------------------------------------TCAAAGAGTTTAAATGCCAAAAATTAACTTCTAATGTGCCATAATATAGGATTCACTTATTAATGTTTTTATAATAAGCTATGTATTTTT-ACATATTTTCTTTTT-ATTAATT-TAAACTT-----------AATAAACTATTTAAATTC-------GTTACAATTC---AAATAGT-TGCCACTTGGTTGCAATTAGA---TGGCAACGCCAATAATGCAAAAGACT---------------------------------------------------------------------------------------------------------------------------GGCA----ACGCCCGAAAGTGACATTG------GC-------------AGGCACTGTT-------TTCATCTG------GCGT-------------A-GAAGAASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACATTG------GC-------------AGGCACTGTT-------T......................................2012.002020000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGACATTG------GC-------------AGGCACTGTT-------.......................................2111.001010000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCACTGTT-------TTCATCTG------GC.......................2011.001010000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACATTG------GC-------------AGGCACTGTT-------T......................................2111.001010000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGACATTG------GC-------------AGGCACT.................................................1811.001010000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCATCTG------GCGT-------------A-GAAGA.1811.001010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTT-------TTCATCTG------GCGT-------------A-GA....2011.001000010
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTT-------TTCATCTG------GCGT-------------A-GAAGA.2111.001000001
droBip1
CTTT------------------------TAAT-ATCTTT---CAACAATTTTATCAATC----------------------------------------------------A-----------------------------AAAGATTTAGTTA---------AT----ATTAAGTTTAAAGTAATATATAA-GT-T------ATAATTTGGAAA------ATAA----------------------------------------------------AAATTA-AAGTAATTCTTGTATTTATTCAAATTTT-----------------------------------------------ATTC-------GTTACATTTC---AAATAGT-TGCCACTTAGTTGCATTTATA---TGGCAACGCTTCCAATGCGAAACTCT---------------------------------------------------------------------------------------------------------------------------GGCA----GCGCTAAAAAGTGACATTT------GCA-------------GGCACTGTTTTCATCTGTCGTAGA---------------------------AGAASizeHit CountTotal NormTotal
No Reads
dp5
ACG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G-------T-------------------------------------------AT------------------------------------ATTTCGGTACATTTCTGGGG----GTCGGACCGTATT---TTT------ATAAA-----TCCGCGGTCACA--------CTGCAGACCGTACTTGTCAAGAAAAAATTTAACA-ATAAAASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-----TCCGCGGTCACA--------CTGCAGACC................................2211.0010100000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCAGACCGTACTTGTCAC.....................2011.0010100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCACA--------CTGCAGACCGTACTT..........................2111.0010000100000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACA--------CTGCAGACCGTACTTGTCAAG....................2411.0010100000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACA--------CTGCAGACCGTACTTGTC.......................2211.0010010000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA-----TCCGCGGTCACA--------CTGCA....................................19130.0810100000000
droPer2
GTATA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTT------ATAAA-----TCCGCGGTCACA--------CTGCAGGCCGTACTTGTCAAGAAAAAATTTAACA-ATAAAASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-----TCCGCGGTCACA--------CTGCAGGCC................................2211.001010000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA-----TCCGCGGTCACA--------CTGCAGGCC................................2311.001100000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGCGGTCACA--------CTGCAGGCCGTC.............................2311.001000010
droVir3
AAAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGAATTCTTTA--------AACT-------AATACAACTTATACAATCTGGCAGCACTGTCTACTAC--------TGTCATC-GATTAGTCGACCGAC--TACAACTTTAA----------------------------------------------------------------------GTTTGG--TATTTCGATG------TCAGA-----AAGTTGGTCACA--------CTGGCCTGCT------GCTG-------------ACATCTAASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCACA--------CTGGCCTGCT------GCTG-------------AC......2311.001000100000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-----AAGTTGGTCACA--------CTGGCCTGCT------.........................2311.001000000000000000000000000000000000000000000000000000010000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTTGGTCACA--------CTGGCCT..................................1911.001000000000000000001000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATC-GATTAGTCGACCGAC--TACAACT.........................................................................................................................................................................2511.001100000000000000000000000000000000000000000000000000000000000000

Generated: 05/19/2015 at 12:45 AM