ID:

dsi_15905

 Coordinate:

3r:10137324-10137561 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-5.9 -5.44 -5.4

Flybase annnotation

five_prime_UTR [3r_10137592_10137676_-]; CDS [3r_10137562_10137591_-]; exon [3r_10136880_10137323_-]; CDS [3r_10136880_10137323_-]; exon [3r_10137562_10137676_-]; intron [3r_10137324_10137561_-]

No Repeatable elements found

Sense Strand Reads

##################################################----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
AAATTATCGGGATAAAAACGATGGCCTCTATTAACAAATTGGCAATTTTGGTATGTTATAATGCGAATGAATAGAAAAAAAAGTGAAAAAGCTCCGGTCAATGCCAAACCATTTTAAGTGCATGTCAAATTATTATTGCCTGGACAACCCGCTGTCTCATATGTACAATTATCTAACGTGCGTTTCTTGGTTATGTAATTTTTGCCCACCTTAACCCACGAACCGCGGGTAGTTTATGTTTAATAAGCCGAAAAACTTACCAAGTGCTCTCGTTTGCTTATCCCGCAGAGCCGCACCCTCAGCTCCGCTGCCGCCCAGGCGACGGTGAAGCCACCAGT
*********************************************************************************...........(((((.(((((..............................))))).)))))....********************************************************************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902008
ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 M053
female body
 GSM343915
embryo
 SRR618934
dsim w501 ovaries
 M023
head
 SRR553487
NRT_0-2 hours eggs
 SRR902009
testis
 M025
embryo
 SRR553488
RT_0-2 hours eggs
 M024
male body
............................TATTAACAAATTGGCAATTTTGAGC............................................................................................................................................................................................................................................................................................. 25 3 1 16.00 16 1 4 9 1 0 0 0 1 0 0 0 0
............TAAAAACGATGGCCTCTATTAACAA............................................................................................................................................................................................................................................................................................................. 25 0 1 6.00 6 6 0 0 0 0 0 0 0 0 0 0 0
......TCGGGATAAAAACGATGGCCTCTAT................................................................................................................................................................................................................................................................................................................... 25 0 1 5.00 5 1 4 0 0 0 0 0 0 0 0 0 0
..........................TCTATTAACAAATTGGCAATTTTGAGC............................................................................................................................................................................................................................................................................................. 27 3 1 4.00 4 1 2 1 0 0 0 0 0 0 0 0 0
..........GATAAAAACGATGGCCTC...................................................................................................................................................................................................................................................................................................................... 18 0 1 2.00 2 0 0 0 0 0 0 2 0 0 0 0 0
.......TGGGATAAAAACGATGGCCTCTATT.................................................................................................................................................................................................................................................................................................................. 25 1 1 2.00 2 0 0 0 0 0 0 0 1 0 0 1 0
.......CGGGATAAAAACGATGGCCTCTATTAAC............................................................................................................................................................................................................................................................................................................... 28 0 1 2.00 2 1 0 1 0 0 0 0 0 0 0 0 0
.......TGGGATAAAAACGATGGCCTCTATTAACAAA............................................................................................................................................................................................................................................................................................................ 31 1 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0
............................................................CTGCGGATGAATATAAAAAAAA................................................................................................................................................................................................................................................................ 22 3 6 1.83 11 0 0 0 0 0 0 0 0 11 0 0 0
.........................................................................................................................................................................................................................................................................................................CTCAGCTCCGCTGCCGCCCAGGCGA................ 25 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0
..............................................................................................................................................................................................................................................................................................TGAGCCGCACCCTCAGCTCCGCTGCC.......................... 26 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
AAATTATCGGGATAAAAAC............................................................................................................................................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................................................CGCACCCTCAGCTCCGCTGCCGCCCA..................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.....................TGGCCTCTATTAACAAATTGGCAA..................................................................................................................................................................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..........................................CAATTTTGGTATGTTATAAT.................................................................................................................................................................................................................................................................................... 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.......CGGGATAAAAACGATGGCCTCTA.................................................................................................................................................................................................................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................................................................................CGCCCAGGCGACGGTGAAG........ 19 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................................................................................CGCCCAGGCGACGGTGAAGCCACCAGA 27 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.....ATCGGGATAAAAACGATGGCCTCT..................................................................................................................................................................................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
......TTGGGATAAAAACGATGGCCTCTATT.................................................................................................................................................................................................................................................................................................................. 26 1 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0
........................................................................................................................................................................................................................................................................................................................GCCCAGGCGACGGTGAAGCCA..... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
...............AAACGATGGCCTCTATTAACAAATT.......................................................................................................................................................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................................AGTGAAAAAGCTCCGGTC............................................................................................................................................................................................................................................... 18 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................TTGAGCCGCACCCTCAGCTCCGCTGCC.......................... 27 2 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
..ATTATTGGGATAAAAACGA............................................................................................................................................................................................................................................................................................................................. 19 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
....TATCGGGATAAAAACGATGGCCTCT..................................................................................................................................................................................................................................................................................................................... 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................................TGAGCCGCACCCTCAGCTCCGCTGCCG......................... 27 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
......TCGGGATAAAAACGATGGCCTC...................................................................................................................................................................................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................................................TGCCGCCCAGGCGACGGTGAAGCCACC... 27 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................................................TGCCGCCCAGGCGACGGTGAAGCCA..... 25 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
.......CGGGATAAAAACGATGGCCTCTAT................................................................................................................................................................................................................................................................................................................... 24 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0
............TAAAAACGATGGCCTCTATTAACAAAT........................................................................................................................................................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
......TCGGGATAAAAACGATGGCCTCTA.................................................................................................................................................................................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
............................TATTAACAAATTGGCAATTTTGAG.............................................................................................................................................................................................................................................................................................. 24 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
......TCGGGATAAAAACGATGGCCTCTATT.................................................................................................................................................................................................................................................................................................................. 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.............................................................TGCGGATGAATATAAAAAAAA................................................................................................................................................................................................................................................................ 21 2 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0
........................................................................................................................................................................................................................................................................................................................GCCCAGGCGACGGTGCAGGCA..... 21 2 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................................................................AGGCGACGGTGAAGCCACCAG. 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................................................TGCACCCTCAGCTCCGCTGC........................... 20 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
..................................................................................................................................TATTATTGCCTGGACAAC.............................................................................................................................................................................................. 18 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
............................................................................................................................................................................................................................................................................................TTTGAGCCGCACCCTCAGCTCCGCTGC........................... 27 3 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0
............TAAAAACGATGGCCTCTATTAACAAATT.......................................................................................................................................................................................................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
......TCGGGATAAAAACGATGGCCTCT..................................................................................................................................................................................................................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................................................AGCCGCACCCTCAGCTCCGCTGCC.......................... 24 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1
..ATTGTCGGGATAAAAACGA............................................................................................................................................................................................................................................................................................................................. 19 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.........................CTCTATTAACAAATTGGCA...................................................................................................................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0
....................................................................................................................................................................................................................................................................................................................TGCCGCCCAGGCGACGGTGAAGCC...... 24 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................................TGAGCCGCACCCTCAGCTCCGCTGC........................... 25 1 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0
......TTGGGATAAAAACGATGGCCTCTA.................................................................................................................................................................................................................................................................................................................... 24 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................................TCAGCTCCGCTGCCGCCCAGGCGACGG............. 27 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
......TCGGGATAAAAACGATGGCCTCTATTA................................................................................................................................................................................................................................................................................................................. 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
..ATTATCGGGATAAAAACGATGGC......................................................................................................................................................................................................................................................................................................................... 23 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................................................TGCCGCCCAGGCGACGGTGAAGCCAC.... 26 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
...........................CTATTAACAAATTGGCAATT................................................................................................................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
................................................................................................................................ATTATTATTGCCTGGACAACC............................................................................................................................................................................................. 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
...................GATGGCCTCTATTAACAAATTGGCA...................................................................................................................................................................................................................................................................................................... 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................................................AGCCGCACCCTCAGCTCCGCC............................. 21 1 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0 0
.............................................................TGCGGATGAATATAAAAAAAAA............................................................................................................................................................................................................................................................... 22 3 19 0.21 4 0 0 0 0 0 0 0 0 4 0 0 0
.................................................................AATGAACAGAAAAGATAGTGAAA.......................................................................................................................................................................................................................................................... 23 3 6 0.17 1 0 0 0 0 0 0 0 1 0 0 0 0
.................................................................AATGAACAGAAAAGATAGTGAA........................................................................................................................................................................................................................................................... 22 3 9 0.11 1 0 0 0 0 0 0 0 1 0 0 0 0
................................................................................................................................................................................................ATGTGATTTTTGCCCA.................................................................................................................................. 16 1 9 0.11 1 0 1 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................................TTTGAGCCGCACCCTCAGCT.................................. 20 3 16 0.06 1 0 0 0 0 0 1 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................................GCACCCTTAGCTCAGCTGG........................... 19 3 17 0.06 1 0 0 0 0 0 0 0 0 0 0 1 0
...........................................................AAAGCGAATGATTAGAAA..................................................................................................................................................................................................................................................................... 18 2 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0
AAATTATCGCGATAA................................................................................................................................................................................................................................................................................................................................... 15 1 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

TTTAATAGCCCTATTTTTGCTACCGGAGATAATTGTTTAACCGTTAAAACCATACAATATTACGCTTACTTATCTTTTTTTTCACTTTTTCGAGGCCAGTTACGGTTTGGTAAAATTCACGTACAGTTTAATAATAACGGACCTGTTGGGCGACAGAGTATACATGTTAATAGATTGCACGCAAAGAACCAATACATTAAAAACGGGTGGAATTGGGTGCTTGGCGCCCATCAAATACAAATTATTCGGCTTTTTGAATGGTTCACGAGAGCAAACGAATAGGGCGTCTCGGCGTGGGAGTCGAGGCGACGGCGGGTCCGCTGCCACTTCGGTGGTCA
**********************************************************************************************************************************************************************************************...........(((((.(((((..............................))))).)))))....********************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 M025
embryo
 O001
Testis
 SRR553488
RT_0-2 hours eggs
 M024
male body		 SRR618934
dsim w501 ovaries
..............................................................................................................................................................................................................................................................................................TTTCGGCGGGGGAGTCGAGGCG.............................. 22 2 1 1.00 1 1 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................................................GTGGGAGTCTAGGCGAC............................ 17 1 1 1.00 1 0 1 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................................TTTGGGAGTCGAGGCGACGG.......................... 20 2 1 1.00 1 1 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................................................TCGGCGTGGGAGTCGAGGCGACGGCGGG...................... 28 0 1 1.00 1 0 0 0 1 0 0 0 0
..........................................................................................CGAGGCCAGTTACGGTTTGGT................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0
........................................................................................................................................................................................................................................................................ACGAGAGCAAACGAATAGGGCGT................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0
....ATAGCCCTAGCTTTGCTACT.......................................................................................................................................................................................................................................................................................................................... 20 3 6 0.50 3 0 0 0 0 0 3 0 0
.....................................................................................TTTTTCGAGGGAAATTACGGTT....................................................................................................................................................................................................................................... 22 3 2 0.50 1 1 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................GCCTTTTTGATTGGTTCACGAT..................................................................... 22 3 2 0.50 1 0 0 1 0 0 0 0 0
......................................................................................................................................................................................................................................................CGGCTTTTTGAATGGTG........................................................................... 17 1 2 0.50 1 0 1 0 0 0 0 0 0
................................................................................................................................................................................................................................................................AATGGTTCTGGAGAGC.................................................................. 16 2 20 0.40 8 0 0 8 0 0 0 0 0
...........................................................................................................................................................AAGTATACATGTTAATAGTTTA................................................................................................................................................................. 22 3 11 0.27 3 0 0 3 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................................................GGTGCGCTGCCAATTCTGT..... 19 3 6 0.17 1 0 0 1 0 0 0 0 0
..........................................................................................................................................................................................................................GATTGGCGCCCATGA......................................................................................................... 15 2 20 0.10 2 0 0 0 0 0 2 0 0
............................................................................................................................................................................................................................................................TTTTAATGGTTCTGGAGAGC.................................................................. 20 3 10 0.10 1 0 0 0 0 0 0 1 0
.......................................................................................................................................................................................................................................................GGCTTTTTGAAAGGTT........................................................................... 16 1 19 0.05 1 0 0 1 0 0 0 0 0
..............................................................................................................................................ATGTTGGGAGACAGAG.................................................................................................................................................................................... 16 2 20 0.05 1 0 0 0 0 0 0 0 1

Generated: 04/24/2015 at 10:30 AM