ID:

dsi_15887

 Coordinate:

3l:7894034-7894101 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

CDS [3l_7892750_7894033_-]; exon [3l_7894102_7894882_-]; exon [3l_7892750_7894033_-]; CDS [3l_7894102_7894707_-]; intron [3l_7894034_7894101_-]; Antisense to intron [3l_7875450_7896031_+]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------##################################################
TTAATTTCTGGAAGCAGCCCAGAAGGTTGAGCTACCTGGCTCGCAATCAGGTAATGGGATATTGGTTTCTCTCTATATTCCAGATTTTTATAACAGATCTTATAACATTTCCGTGTAGGAAACCCCCGTTTATGAGGACGAAGATTTCCCATTGGCCGACAAGCGAAT
**************************************************......................(((((....((((..((((((......)))))).))))...)))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 M053
female body
 GSM343915
embryo
 SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
..........GAAGCAGCCCAGTAG............................................................................................................................................... 15 1 6 3.50 21 21 0 0 0 0
...............GGCCCTGAAGGTTGAGCTA...................................................................................................................................... 19 2 1 1.00 1 0 0 1 0 0
.........................................................................................................................ACCCCCGTTTATGAGGACGAAGAT....................... 24 0 1 1.00 1 0 1 0 0 0
..........GAAGCAGCCCAGTAGC.............................................................................................................................................. 16 2 20 0.15 3 3 0 0 0 0
..........GAAGCAGCCCAGTAGAT............................................................................................................................................. 17 2 15 0.07 1 1 0 0 0 0
................................TACCTGACTCGAAATCA....................................................................................................................... 17 2 18 0.06 1 0 0 0 1 0
...........................................................................TATTCCAGATGTTTCTGAC.......................................................................... 19 3 20 0.05 1 0 0 0 0 1
......TTAGGAAGCAGCCCAG.................................................................................................................................................. 16 2 20 0.05 1 1 0 0 0 0

Anti-sense strand reads

AATTAAAGACCTTCGTCGGGTCTTCCAACTCGATGGACCGAGCGTTAGTCCATTACCCTATAACCAAAGAGAGATATAAGGTCTAAAAATATTGTCTAGAATATTGTAAAGGCACATCCTTTGGGGGCAAATACTCCTGCTTCTAAAGGGTAACCGGCTGTTCGCTTA
**************************************************......................(((((....((((..((((((......)))))).))))...)))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR902009
testis
 M024
male body		 SRR553486
Makindu_3 day-old ovaries
.........CCTTCGTCGGGTCATC............................................................................................................................................... 16 1 1 2.00 2 2 0 0 0 0 0 0
...........................................................................................................................GGGGCAAAGGGTCCTGCTTC......................... 20 3 12 1.25 15 0 3 12 0 0 0 0
.................AGGGCTTCCAATTCGATGGAC.................................................................................................................................. 21 3 2 1.00 2 0 0 0 2 0 0 0
........ACCTTCGTCGGGTCATC............................................................................................................................................... 17 1 1 1.00 1 1 0 0 0 0 0 0
.................AGGGCTTCCAATTCGATGGA................................................................................................................................... 20 3 2 0.50 1 1 0 0 0 0 0 0
..................GGGCTTCCAATTCGATGGACG................................................................................................................................. 21 3 2 0.50 1 0 1 0 0 0 0 0
........ACCTTCGTCGGGTCAT................................................................................................................................................ 16 1 3 0.33 1 1 0 0 0 0 0 0
..........CTTCGTCGGGTCATC............................................................................................................................................... 15 1 6 0.33 2 2 0 0 0 0 0 0
..................GGGCTTCCAATTCGATGGAT.................................................................................................................................. 20 3 3 0.33 1 0 1 0 0 0 0 0
.............................TCAATGGACGGAGCGT........................................................................................................................... 16 2 20 0.30 6 0 0 0 0 6 0 0
..................GGGCTTCTAATTCGATGGAC.................................................................................................................................. 20 3 5 0.20 1 0 1 0 0 0 0 0
...............................................................................................................................CAAAAACTCCTGCTTCTGAAA.................... 21 3 5 0.20 1 0 0 1 0 0 0 0
........TCCTTCGTCGGGTCATC............................................................................................................................................... 17 2 20 0.15 3 3 0 0 0 0 0 0
.........CCTTCGTCGGGTCAT................................................................................................................................................ 15 1 7 0.14 1 1 0 0 0 0 0 0
...................GGCTTCCAATTCGATGG.................................................................................................................................... 17 2 15 0.13 2 0 1 0 0 0 0 1
.................................................................................................AGCAGATTGTAAAAGCACAT................................................... 20 3 8 0.13 1 0 0 0 0 0 1 0
....AAAATCCTTCGTCGGGT................................................................................................................................................... 17 2 17 0.06 1 1 0 0 0 0 0 0
......AAACCTTCGTCGGGTCA................................................................................................................................................. 17 2 18 0.06 1 1 0 0 0 0 0 0
....................................................................................AAAAAAATTGTCTAGAATCGT............................................................... 21 3 19 0.05 1 0 1 0 0 0 0 0
.....................................CCAAGCGTTAGTCCATGT................................................................................................................. 18 3 20 0.05 1 1 0 0 0 0 0 0
.........ACTTCGTCGGGTCATC............................................................................................................................................... 16 2 20 0.05 1 1 0 0 0 0 0 0
........ACCTTCGTCGGGTCACC............................................................................................................................................... 17 2 20 0.05 1 1 0 0 0 0 0 0

Generated: 04/24/2015 at 10:30 AM