ID:

dsi_1580

Coordinate:

3l:7445563-7445712 +

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

AGTATATTCAAGTATTCGGACAGCAGAAGAAGAGGTGTGATGTTTGATGGGTGCGTGTGTGTGTGTGTGCAGCGAATGCAAAAACAGTTTCGATTTTTTTTCAATTTTTCCGCCTTCTGTTTTTGTTTCGATTCGGTGGGGCCCCAACTTATTGCATTATTTATGTACGGGTAGTACGATTTTTCTGGGTTCCCCAGTAAGCCACACGCACCAGAAAATTGTATAAACAAAACGCGGAAAGCAACAACAA ************************************************.(((.((((((((...((((((((((.((((((((((...((..................))....))))))))))))))....(((((....)).)))..))))))....)))))))).)))...........(((((...)))))...************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553486 Makindu_3 day-old ovaries	SRR553488 RT_0-2 hours eggs	M025 embryo	SRR618934 dsim w501 ovaries	O001 Testis	M023 head	SRR902009 testis
.........................................................................................................................TTTGTCTCGATTCGGTGGGGCCCCAAC......................................................................................................	27	1	1	1.00	1	1	0	0	0	0	0	0
............TGTTCGGACAGCAGAAGAAGAGGTG.....................................................................................................................................................................................................................	25	1	1	1.00	1	0	1	0	0	0	0	0
.......TCCAGTGTTCGGACAGCAGAAGAAGAGG.......................................................................................................................................................................................................................	28	2	1	1.00	1	0	1	0	0	0	0	0
...........................................................................................................................................................................TAGTACGATTTTTCTGGGTTCCCCAGTAAGC................................................	31	0	1	1.00	1	1	0	0	0	0	0	0
......................................................................................................................................................................ACGGGTAGTACAACTTTT..................................................................	18	2	6	0.33	2	0	0	2	0	0	0	0
......................................................................................................................................................................................................AAGGTAGACGCACCAGAAAA................................	20	3	6	0.17	1	0	0	0	1	0	0	0
......................................................................................................................................................................ACGGGTAGTACAATTTAT..................................................................	18	2	9	0.11	1	0	0	0	0	1	0	0
.................................................................................................................................GATTCGATGGGCCCCCA........................................................................................................	17	2	18	0.06	1	0	0	0	1	0	0	0
........................................................................................................................................................................................................................AATTCTATAAACAAAA..................	16	1	20	0.05	1	0	0	0	0	0	0	1
.......................................................................................................................................................................CGGGTAGTACGCTTCT...................................................................	16	2	20	0.05	1	0	0	0	1	0	0	0
.................................................GGTGCGAGTGTGTGTGTCTGC....................................................................................................................................................................................	21	2	20	0.05	1	0	0	0	0	0	1	0

Anti-sense strand reads

TCATATAAGTTCATAAGCCTGTCGTCTTCTTCTCCACACTACAAACTACCCACGCACACACACACACACGTCGCTTACGTTTTTGTCAAAGCTAAAAAAAAGTTAAAAAGGCGGAAGACAAAAACAAAGCTAAGCCACCCCGGGGTTGAATAACGTAATAAATACATGCCCATCATGCTAAAAAGACCCAAGGGGTCATTCGGTGTGCGTGGTCTTTTAACATATTTGTTTTGCGCCTTTCGTTGTTGTT ************************************************.(((.((((((((...((((((((((.((((((((((...((..................))....))))))))))))))....(((((....)).)))..))))))....)))))))).)))...........(((((...)))))...************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	O001 Testis	SRR618934 dsim w501 ovaries	M024 male body	SRR553487 NRT_0-2 hours eggs	SRR553488 RT_0-2 hours eggs
...............................CTCCACACTACAAACTACCC.......................................................................................................................................................................................................	20	0	1	1.00	1	1	0	0	0	0
.........................................................................................................................................CTCCGGGGTTGAATTACGA..............................................................................................	19	3	15	0.07	1	0	0	1	0	0
...........................................................................................................................................................................................................TGTGCGTAGTCTATTAA..............................	17	2	15	0.07	1	0	1	0	0	0
........................................................................................................AAAAAGGAGGAAGACATA................................................................................................................................	18	2	19	0.05	1	0	0	0	1	0
.....................................................................................................................................................................................................ATTCGGTGTGCGAGGTG....................................	17	2	20	0.05	1	0	0	0	0	1
....................................................................................................................................................................................AAAAGGCCCTAGGGCTCAT...................................................	19	3	20	0.05	1	0	1	0	0	0

Generated: 04/24/2015 at 09:14 AM