ID:

dsi_15792

 Coordinate:

3r:23170255-23170404 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-6.9 -6.9 -6.5 -6.4

Flybase annnotation

Antisense to CDS [3r_23170112_23170242_+]; Antisense to three_prime_UTR [3r_23170243_23170302_+]; Antisense to exon [3r_23170112_23170302_+]

No Repeatable elements found

Sense Strand Reads

ATATGCTGCACCGGCGATTATTAAACTTTGAGGTGTAGCGCTAAAATAAAAATTTTATTGTTAAAGAATTCAAACGAAAAAACAAGCGGAAGCAAAACCATTGGCAAGCGAAACGGCCCATTAAACGGATGAAAGAAACGAACACTTGTTTTATGTCAAATGCATTAACAACAATTGCCTTTTATTGTTTCCGATAACAGGTGGTCCGTTGGCTAGAGGATGGAGTCCAGGCCCCGGCGACGAGAGCGCT
*************************************************************...((...(((..((..........((...((..............))....))..........))..)))............))******************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR902009
testis
 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 M024
male body		 SRR902008
ovaries
 SRR553487
NRT_0-2 hours eggs
 M053
female body
 M025
embryo
 M023
head
 SRR553488
RT_0-2 hours eggs
 O001
Testis
.............................................................TAAAGAATTCAAACGAAAAAACAAGC................................................................................................................................................................... 26 0 1 5.00 5 0 2 0 1 0 1 1 0 0 0 0 0
....................................................................................AGCGGAAGCAAAACCATTGGCAAGCGA........................................................................................................................................... 27 0 1 4.00 4 0 2 1 0 0 1 0 0 0 0 0 0
.........................................................................................................................................................................................................TGGTCCGTTGGCTAGAGGATGG........................... 22 0 1 3.00 3 1 2 0 0 0 0 0 0 0 0 0 0
.....................TAAACTTTGAGGTGTAGCGCTAAAA............................................................................................................................................................................................................ 25 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0
...............................................TACAATTTTATTGTTAAAGAATTCAAA................................................................................................................................................................................ 27 2 1 2.00 2 0 0 1 0 0 0 1 0 0 0 0 0
.............................................................TAAAGAATTCAAACGAAAAAACAAGCGGA................................................................................................................................................................ 29 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................GTCCGTTGGCTAGAGGATGGA.......................... 21 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................TAAACGGATGAAAGAAACGAACACT........................................................................................................ 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
..................TATTAAACTTTAAGGTGTAGCGCTAAATT........................................................................................................................................................................................................... 29 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0
..................TATTAAACTTTGAGGTGTAGCGCTAAA............................................................................................................................................................................................................. 27 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
...............................................................................................AACCATTGGCAAGCGAAACGG...................................................................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
.............GCGATTATTAAACTTTAAGGT........................................................................................................................................................................................................................ 21 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
.........................CTTTAAGGTGTAGCGCTAAATTAAAA....................................................................................................................................................................................................... 26 2 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
...................................................ATTTTATTGTTAAAGAATTCAAACGAAA........................................................................................................................................................................... 28 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
...............................................................AAGAATTCAAACGAAAAAACAAGCGGA................................................................................................................................................................ 27 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
....................................................................................AGCGGAAGCAAAACCATTGGCAAGCG............................................................................................................................................ 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
...........................TTGAGGTGTAGCGCTAAAATAAAAAT..................................................................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.................................................CAATTTTATTGTTAAAGAATTCAAAC............................................................................................................................................................................... 26 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
................................................................AGAATTCAAACGAAAAAACAAGCGGA................................................................................................................................................................ 26 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
..............................................................AAAGAATTCAAACGAAAA.......................................................................................................................................................................... 18 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
......................AAACTTTGAGGTGTAGCGCTAAAATA.......................................................................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................AAAGAATTCAAACGAAAAAACAAGCGGA................................................................................................................................................................ 28 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
...................................................................ATTCAAACGAAAAAACAAGCGGAAG.............................................................................................................................................................. 25 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0
................................................................................................................................................................................GCCTTTTATTGTTTCCAAAAA..................................................... 21 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.....................................................................................................TGGCAAGCGAAACGGCCCATTAAACGGA......................................................................................................................... 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................CGGATGAAAGAAACGAACACT........................................................................................................ 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
....................................................................................AGCGGAAGCAAAACCATTGGCAAGCGAA.......................................................................................................................................... 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
..................................GTAGCGCTAAAATAAAAATTTTATT............................................................................................................................................................................................... 25 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0
....................................................................................................................................................................................................AAAGGTGGTCCGTTGGCTGGAGGA.............................. 24 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
......................AAACTTTGAGGTGTAGCGCTAAAAT........................................................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................GGTGGTCCGTTGGCTAGA................................. 18 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1
.....................................................TTTATTGTTAAAGAATTCAAACGA............................................................................................................................................................................. 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................................TTAAACGGATGAAAGAAAA............................................................................................................... 19 1 2 1.00 2 0 0 0 0 0 0 0 0 0 2 0 0
........................................................ATTGTTAAAGAATTCAAACGAAAAAACA...................................................................................................................................................................... 28 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
..........................................................................................................AGCGAAACGGCCCATTAAACGGAAA....................................................................................................................... 25 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
...........................TTGAGGTGTAGCGCTAAAAT........................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
.......................................................TATTGTTAAAGAATTCAAACGAAAAAA........................................................................................................................................................................ 27 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
...........CGGCGATTATTAAACTTTGAGGT........................................................................................................................................................................................................................ 23 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0
..................TATTAAACTTTAAGGTGTAGCGCT................................................................................................................................................................................................................ 24 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
............................................................TTAAAGAATTCAAACGAAAAAACAAGCGGA................................................................................................................................................................ 30 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................ATTAAACGGATGAAAGAAAC............................................................................................................... 20 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
.....................................................................................................TGGCAAGCGAAACGGCCCATTAAACGGAA........................................................................................................................ 29 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................ATAACAGGTGGTCCGTTGGCT.................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
....................................................................................................................CCCATTAAACGGATGAAAGAAACGAAAA.......................................................................................................... 28 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
.........................................................................................................................TAAACGGATGAAAGAAAC............................................................................................................... 18 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
...................ATTAAACTTTGAGGTGTAGC................................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
........................................................................AACGAAAAAACAAGCGGAAGCAAAACC....................................................................................................................................................... 27 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
........................................................................................................................................................................................................GTTGTCCGTTGGCTAGAGG............................... 19 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
...................................................................................AAGCGGAAGCAAAACCATTGGC................................................................................................................................................. 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
...TGCTGCACCGGCGATTATTAAACT............................................................................................................................................................................................................................... 24 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0
.........................................................................................................................TAAACGGATGAAAGAAACGAACACTTGT..................................................................................................... 28 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
....................TTAAACTTTGAGGTGTAGCGCTAAAA............................................................................................................................................................................................................ 26 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0
........................................................................................................................TTAAACGGATGAAAGAAACGAACACTTGT..................................................................................................... 29 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................CCGTTGGCTAGAGGATGGAGT........................ 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
..........................................................TGTTAAAGAATTCAAACGAAAAAAC....................................................................................................................................................................... 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.....................TAAACTTTGAGGTGTAGCGCTAAAAT........................................................................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................TTGGCAAGTGAAACGGCC.................................................................................................................................... 18 1 2 0.50 1 0 0 0 0 0 0 0 0 0 1 0 0
...........................................................................GAAAAAACAAGCGGA................................................................................................................................................................ 15 0 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................TAAACGGATGAAAGAAACGAAA........................................................................................................... 22 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................AAACGGATGAAGGAGGCGAAC........................................................................................................... 21 3 4 0.25 1 0 0 0 0 1 0 0 0 0 0 0 0
.....................................................................................................................................................................................TCAGTGTTTCCGTTAACAGG................................................. 20 3 5 0.20 1 0 0 0 0 0 0 0 0 0 0 1 0
.......................................................................................................................AATAAGCGGAGGAAAGAAAC............................................................................................................... 20 3 20 0.20 4 0 0 0 0 4 0 0 0 0 0 0 0
....................................................TTTTATTGTTAAAGA....................................................................................................................................................................................... 15 0 5 0.20 1 0 0 0 0 0 0 0 0 0 0 1 0
.........................................................................................................................TAAGCGGAGGAAAGAAAC............................................................................................................... 18 2 6 0.17 1 0 0 0 0 1 0 0 0 0 0 0 0
..............................................TAAAAATTATATTGGTAAAGGA...................................................................................................................................................................................... 22 3 8 0.13 1 0 0 0 0 0 0 1 0 0 0 0 0
..............................................................................................................................................................................................................CGTTGGCTGGAGGAT............................. 15 1 10 0.10 1 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................GGTTGGCTAGAGTATGG........................... 17 2 10 0.10 1 0 0 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................GGAGGAAAGAAACTAACA.......................................................................................................... 18 2 11 0.09 1 1 0 0 0 0 0 0 0 0 0 0 0
..................................................................................CAAGCCGAAGCAAAACC....................................................................................................................................................... 17 1 11 0.09 1 1 0 0 0 0 0 0 0 0 0 0 0
...........CGGAGATTATTAAAC................................................................................................................................................................................................................................ 15 1 15 0.07 1 0 0 1 0 0 0 0 0 0 0 0 0
....................TTAAACTTCGAGATGTA..................................................................................................................................................................................................................... 17 2 17 0.06 1 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................ATTAAACGGAGGAAA.................................................................................................................... 15 1 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0

Anti-sense strand reads

--------------------------------------------------------------------------------------------------------------------------------------------------------##################################################################################################
TATACGACGTGGCCGCTAATAATTTGAAACTCCACATCGCGATTTTATTTTTAAAATAACAATTTCTTAAGTTTGCTTTTTTGTTCGCCTTCGTTTTGGTAACCGTTCGCTTTGCCGGGTAATTTGCCTACTTTCTTTGCTTGTGAACAAAATACAGTTTACGTAATTGTTGTTAACGGAAAATAACAAAGGCTATTGTCCACCAGGCAACCGATCTCCTACCTCAGGTCCGGGGCCGCTGCTCTCGCGA
********************************************************************************************************...((...(((..((..........((...((..............))....))..........))..)))............))************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 M023
head
 M025
embryo
 O002
Head
 SRR618934
dsim w501 ovaries
 SRR902009
testis
 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR902008
ovaries
 SRR553487
NRT_0-2 hours eggs
.........TGGCCGCTAATAATTTGAAAT............................................................................................................................................................................................................................ 21 1 1 2.00 2 0 0 0 0 0 1 0 0 1 0
..........................................................................................................................................................................................CAAAGGCTATTGTCCACCAGGCAACCG..................................... 27 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................CTCCTACCCCAGGTCCGGGGCCGCTG......... 26 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0
..........................................................................................................................................................................................................................CTACCTCAGGTCCGGGGCCGCTGCT....... 25 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
..................................................................................................................................................................................................................CCGATCTCCTACCTCAGGTC.................... 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................TCAGGTCCGGGGCCGCTGCTCT..... 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................AGGCAACCGATCTCCTACCTCAGGT..................... 25 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0
..............................................................................................................................................................................................GGCTATTGTCCACCAGGCAAC....................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................TAACGGAAAATAACAAAGGCTATTG.................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...............................................................................................TTGGTAACCGTTCGCTTTGCC...................................................................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
..........................................................................................................TCGCTTTGCCGGGTAATTTGC........................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0
........GTGGCCGCTAATAATTTGAAA............................................................................................................................................................................................................................. 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
.............................................................................................................................................................................................AGGCTATTGTCCACCAGGCAA........................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................TCTCCTACCTCAGGTCCGGGG............... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
.......................................................................................................................................................................................................CCACCAGGCAACCGATCTCCTA............................. 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................TGTCCACCAGGCAACCGATCT................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.............................................................................TCATTGTTCGCCTTCGTTTTGAT...................................................................................................................................................... 23 3 3 0.33 1 0 0 0 0 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3r:23170205-23170454 - dsi_15792 ATATG------CTGCACCGGCGA--T-TATTA---------------------AACT--TTGAGGTGTAGCGC-TAAA-ATAAAAA--TTTTATTGTTA--AAGAATTCAAA--CGAA-AA-------AACAAGCGG--AAGCAAA----------ACCATTG--------------------GCAA-GCG-------------------AAA-C--GGCCC------ATTAAA--CGGATGAAAGAAACG------A--A-----CA-CTTG----------TTT--TATGTCAAATGCAT--T-AACAACAATTG--CCT-T-TT-------------------------------ATT--GTTT------------------------------CC-GATAACAG---GTG--------------GTCCGTT--------------------------------------------GGCTAGAGGATGGAGTCCAGGCCCCGGCGACGAGAGCGCT
droSec2 scaffold_22:393696-393944 - ATATG------CTGCACCGGCGA--T-TATTA---------------------AACT--TTAAGGTGTAGCGC-TAA--ATTACAA--TTTTATTGTTA--AAGAATTCAAA--CGAA-AA-------AACAAGCGG--AAGCAAA----------ACCATTG--------------------GCAA-GCG-------------------AAA-C--GGTCC------ATTAAA--CGGATGAAAGAAACG------A--A-----CA-CTTG----------TTT--TATGTCAAATGCAT--T-AACAACAATTG--CCT-T-TT-------------------------------ATT--GTTT------------------------------CC-GATAACAG---GTT--------------GTCCGTT--------------------------------------------GGCTAGAGGATGGAGTCCAGGCCCCGGCGACGAGAGCGCT
dm3 chr3R:23768403-23768654 - ATATG------CTGCACCGGCGA--C-TATTA---------------------AACT--GTAAGGTGTAGCGC-TAA--ATTACAA--TTTTATTGTTA--AAGAATTCAAA--CGAA-AAAAA----AACAAGCGG--AAGCAAA----------ACCATTG--------------------GCAA-GCG-------------------AAA-T--GGCCC------ATTAAA--CGGATGAAAGAAACG------A--A-----GA-CTTG----------TTT--TATGTCAAATGCAT--T-AACAACAATTG--CCT-T-TT-------------------------------ATT--GTTT------------------------------CC-GATAACAG---GTT--------------ATCCGTT--------------------------------------------GGCTAGAGAATGGAGTCCAGGCCCCGGCGACGAGAGCGCT
droEre2 scaffold_4820:4273980-4274232 + ATATG------CTACACCGGCGA--T-TATTA---------------------AACT--GTAAGGTGTAGCGC-TAA--ATTACAA--TTTTATTGTTA--AAGAATTCAAA--CGAA-AA-------C--AAGCGG--AAACAAAAGCAAA---AACCATTG--------------------GCAA-GCG-------------------AA--A--GGCCC------ATTAAA--CGGATGAAAGAAAAG------A--T-----CA-CTTG----------TTT--TATGTCAAATGCAT--T-AACAACAATTG--CCT-T-TT-------------------------------ATT--GTGT------------------------------CC-GATAACAG---GTT--------------GTTCGTT--------------------------------------------AGCTAGAGAATTGAGTCCAGGCCCCGGCGACGAGAGCGCT
droYak3 3R:22729002-22729261 + ATATG------CTACACCGGCGA--T-TATTT---------------------AACT--GTAAGGTGTAGCGC-TAAA-ATTACAA--TTTTATTGTTA--AAGAATTCAAA--AGAA-AA-------CACAAGCGA--AAGCAAA----------ACCATTG--------------------GCAA-GCG-------------------AAAAA--GGCCC------ATTAAA--CGGATGAAAGAAGAG------A--T-----CA-CTTG----------TTT--TATGTCAAATGCAT--T-AACAACAATTG--CCT-TTTT-------------------------------ATT--GTTT------------------------------CC-GATAACAG---GTT--------------ATTCGTTA------------GC-TGTT-----------------------TAGCTAAAGGATGGAGTCCAGGCCCCGGCGACGAGAGCGCT
droEug1 scf7180000409787:1838579-1838829 + ATATG------CTACACCAGCGA--T-TATTA---------------------AACT--GTAAGGTGTAGCTC-TAAA-ATTAAAA--TTTTATTGTTA--AAGAATTCAAA--CGAA-AA-------CA-AAGCGG--AAGCAAA----------CTCATTG--------------------GCAA-ACA-------------------AAA-A--GGCCC------ATTAAA--CGGATGAAAGAAGA----------------TA-TTTGT---ATT--TTTT--TATGTCAAATGCAT--T-AACAACAATTG--CTT-T-TT-------------------------------ATT--GTTT------------------------------CC-GATAACAG---TTC--------------ACTCGTT--------------------------------------------AGCTAGAGGATTGCATCCAGGCCCCGACGACGAGAGCGCT
droBia1 scf7180000302075:5340182-5340447 - ATATG------CTACACCGGCGA--T-TATTA---------------------CACT--GTAAGGTGTAGCTC-TAAA-ATTAAAA--TTTTATTGTTA--AAGAATTCAAA--CGAA-AA-------CA-AAGCGGTTGAGCAAA----------ACCATTG--------------------GCAA-GCG-------------------AAA-A--GGCCC------ATTAAACACGGATGAAAGAAGAG------ATTGAGT------TT---GAGTTTG-TTTCATACGTCAAATGCAT--T-AACAACAATTG--CCT-T-TT----------------------------TTTATT--GTTT------------------------------CC-GATAACAG---TTC--------------GATGGTT--------------------------------------------GGCTAGAGGATTGAATCCAGGCCCCGGCGTCGGGAGCGCT
droTak1 scf7180000415310:360146-360396 - ATACG------CTACACCGGCGA--T-TATTA---------------------AACT--GTAAGGTGTAGCTC-TAAA-ATTAAAA--TTTTATTGTTA--AAGAATTCTAAAACGAA-AA-------CA-AAGCGG--AAGCAAA----------ACCATTG--------------------GCAA-GCG-------------------AAA-A--GGCCC------ATTAAA--CGGATGAAAGAAGAT------A--C-----GA-TTTG----------TTT--TATGTCAAATGCAT--T-AACAACAATTG--CCT-T-TT-------------------------------ATT--GTTT------------------------------CC-GATAACAG---TTG--------------ATTCGTT--------------------------------------------AGCTAGAGGATTGAATCCAGGCCCCGGCGACGAGAGCGCT
droEle1 scf7180000491280:4263171-4263460 + ATATG------CTACACCGACGA--T-TATTA---------------------AACT--ATAAGGTGTAGCTC-TAA--ATTACAA--TTTTATTGTTA--AAGAATTCAAA--AGAA-AA-------ACGAAGCGG--AAGCAGAAGCAAT---AACCATTG--------------------GCCA-GCG-------------------AAA-A--AGCCC------ATTAAA--CGGATGAAAGAAAGA------A-AGCGTATTA-CTTG----------TTT--TATGTCAAATGCATTTT-AACAACAATTG--CCT-T-TT-------------------------------ATT--GTTT------------------------------CC-GATAACAG---TTG--------------GTTCGTGTGTGTTCATTCTAGCT-----GAA-------------GGCTAGAGGCTAGAGGATTGAATCCAGGCCCCGGCGACGAGAGCGCT
droRho1 scf7180000779538:511078-511321 + ATATG------CTACACCGACGA--T-TATTG---------------------AACT--GTAAGGTGCAGCCCTTAAA-ATTACAA--TTTTATTGTTA--AAGAATTCAAA--AGAA-AA-------C-------G--AAGCAAA----------AACATTG--------------------GCAA-GCG-------------------AAA-A--GGCCC------ATTAAA--CGGATAAAAGAAAAG------A--T-----AA-CTTG----------TTT--TATGTCAAATGCAT--T-AACAACAATTG--CCT-T-TT-------------------------------ATT--GTTT------------------------------CC-GATAACAG---TTC--------------GTTCGTT--------------------------------------------AGCTAGAGGATTGAATCCAGGCCCCGGCGACGAGACCGCT
droFic1 scf7180000453826:167524-167773 + ATATG------CTACACCGATGA--T-TATTA---------------------AACT--GTAAGGTGTAGCTC-TAAA-ATTACAA--TTTTATTGTTA--ACAAATTTAAA--AGAA-AA-------CA-AAGCAG--AAGCA-A----------ACCATTG--------------------GCAA-GCG-------------------AAA-A--GGCCC------ATTAAA--CGGATGAAAGAAAAG------AAAG-----AA-TTTG----------TTT--TATGTCAAATGCAT--T-AACAACAATTG--CCT-T-TT-------------------------------ATT--GTTT------------------------------CC-GATAACAG---ATC--------------GTTCGTT--------------------------------------------AGCTAGAGGATTGAATCCAGACCCCGGCGCCGAGAGCGTT
droKik1 scf7180000302706:1728327-1728595 - ATACGACTAGGCTACACCGACTA--T-TATTA---------------------AACT--GTAAGGTGTAGCTG-TAAA-ATTACAA--TTTTATTGTTA--AAGAATTCAAA--AGAA-AA-------CA-A-------AAGCAAAAGATGA---CCCCATTG--------------------GCAAAGCG-------------------ACAAAGAAGCCC------ATTAAA--CGGATGAAAGAAGAA---------A-----CATTTTG----------TTT--TATGTCAAATGCAT--C-AACAACAATTG--CCTGT-TT----------------------------TTTATT--TTAT------------------------------CCGGATAACAG---TTCG-------------ATTCGATA------------------------------------------TAGCTAGAGGATTGAGTCCAGGCCCCGGCGACGAGAACGCT
droAna3 scaffold_13340:21902736-21903004 - ATATG------CTACACCGAATA--T-TATTA---------------------AACAAGGCAAGGTGTAGCCC-TAAA-ATTACAA--TTTTATTGTTA--AAGAACTCAAG--CGCC-AA-------G---------------AA----------ACCATTG-------------------------------------------------------GCCC------ATTAAA--CGGATAAATGAAAACCACACAC--C-----CA-CTCG----------ATT--TATGTCAAATGCAT--T-AAC---AATTT--TAT-T-TT---------------ATTGTTTTTGTTTTTTTTT--TTTA----------------------TGTTTTTTGT-GATAACAGAG-TTT-GTTTTTTTTTTTGATTCGAA--------------------------------------------AGCTAGAGGATTGAATCCACGCCCCGGCGACGAGAGCGCT
droBip1 scf7180000396583:302846-303086 + ATACG------CTACACCGAATA--T-TATTA---------------------AACG--GCAAGGTGTAGCCC-TAAA-ATTAAAA--TTTTATTGTTA--AAGAACTCA-----------------------GCGG--CAAG-AA----------CCCATTG--------------------GCT---CG-------------------AGA-G-GGGCCC------ATTAAA--CGGATAAAAGAAAA----------------CA-TACG----------ATT--TATGTCAAATGCAT--T-AACAACAATTG--GCT-T-TT-------------------------------ATT--GTTTTTTTT-------------------------TC-GATAACAGAGTTTTG-------------ATTCGAA--------------------------------------------AGCTAGAGGATTGAATCCACGCCCCGGCGACGGGAGCGCT
dp5 2:8321051-8321346 + CTATACA-----TTTAC---TTA--T-TCTTA---------------------AACT--GTAAAGTGTAGGATGTAAA-ATTAAAA--TTTTATTGTTACCACAAATTCTAA--CAAA-AA-------CAGAAACAG--ATTCAAAAACTAATACAACAATTG--------------------GAAAATTGAAAAT------------------T--TGCCC------ATTAAAACAGAATGAAAGAAACA----CAA--A-----CA-CTTGTGGAATT-GTTTT--TCTGTCAAATGCAT--TCAACAACAATTG--CAT-T------------------------ATTATTTTTTATTTTGTTT------------------------------CC-CACTACAT---TTTG-------------ATTTGTTT---------------TGTTT----------------------AAGCTAGAGGATTGAATCCAAGCCACGTCGGCGCGAGCGCT
droPer2 scaffold_0:2156151-2156436 + ATTTA------CT--------TA--T-TCTTA---------------------AACT--GTAAAGTGTAGGATTTAAA-ATTACAA--TTTTATTGTTACCACAAATTCTAA--CAAA-AA-------CAGAAACAG--ATTCAAAAACTAA---TACAATTG--------------------AAAAATTGGAAAT------------------T--TGCCC------ATTAAAACAGAATGAAAGAAACA----CAA--A-----CA-CTTGTGGAATT-GTTTT--TCTGTCAAATGCAT--TCAACAACAATTG--CAT-T------------------------ATTACTTTTTATTTTGTTT------------------------------CC-CACAACAT---TTTG-------------ATTTGTTT---------------T-TTT----------------------AAGCTAGAGGATTGAATCCAAGCCACGTCGGCGCGAGCGCT
droWil2 scf2_1100000004921:968587-968919 - ATATA------TACCATATATGAAATATATTAAAACAAAAAACAAAAAAAAGAAATT--GTAAAGTATAGGGC-TACATATACCAA--TTTTATTGTTA--AACAATTCAAA--AACAAAAAAA----GAAAAGAGA--AAGAAAA----------AAC---GAAAATTGCAGTAATGCAACAACAA-AAG-------------------A-A-C--AACCC------ATTAAA--CGGATGAAAGAACA----------------CA-CTTG----------TTT--TATGTCAAATGCAA--C-CACAACAATTTTGCAC-A------------------------TTTGTTTTTTATT--ATTA------------------------------TA-ATTAAATG---TTT-GTTTTTAGTTTTAAGT-------------------------GAAAGGACATGCGTATGGA-CCCGGCTAGAGGATTGAGTCCAGGCCACGACGACGAGATCGTT
droVir3 scaffold_12855:3394330-3394605 + AAATA------TTGCACTTGCTA--T-TTGT----------------------AACT--GTGAACTGTAGCCCCTAAA-ATTAATACGCATTATTGTTA--AACAATTCAAG--AGAC-AA---GCAACA-AAA-A---GAGAG-A---------AA-CAATG--------------------A----------ATTTCCCCCTCCCTCAAA-----AAATA------ATTAAA--CGGCGATAAAAA---------A--A-----CA-CTTG----------TTT--TATGTCAAATGCAA--C-AGCAACAATTG--CCC-TTTT-------------------------------AT---ATTT------------GTATATATGATTTGATTTGT-GGTTAAAG---T--------------------------------------------------------GTTAAGC-ACCAACTAGAGGATTGAATCCAGGCCGCGACGGCGCGAACGTT
droMoj3 scaffold_6540:9797045-9797368 - ATATAGA---TGTACACTTGATA--T-TTAT----------------------CAAT--GTAC-TCGTAGCCCTTTAA-ATTAATACTTTTTATTGTTA--AATAATTGAAG--AGAC-AAACAGCAACA-AAAAA---GAGAT-A---------AA-CAATG--------------------GAGA-AAA-------------------A-A-A--TTCCCAAAAATATTAAA--TGGCTATATAAAAAG------C--A-----AA-C-TG----------TTT--TATGTCAAATGCAA--C-AACAACAATTG--CCT-TTTTATTATCAATTCTATAA-------------TTATT--ATTATTTTTTACATATTTATATTTGATTTGATTCGC-GTTACTTTAG-TGT---GTGTGTGT-------------------------------------------GTGAGGC-ACAAGCTAGAGGATTGAATCCAGGCCGCGACGACGCGAACGCT
droGri2 scaffold_14906:6074567-6074737 + AAATA------TTGCACTTGCTA--T-TTGTA---------------------AACT--GTAAACTGTAGCCC-TAAA-TTTAACA--CTTAATTGTTA--AACAATTCAAG--CAAA----------CA-A-------AAGAA-C---------AA-CAATG--------------------GAAA-CCC-------------------AAA-A----CGC------ATTAAA--CGGAGAAAAGAA------------------CA-CTTG----------TTT--TATGTCAAATGCA------ACAACAAATG--CTG-T-TT-------------------------------CTT--TTTT--------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
ATATG------CTGCACCGGCGA--T-TATTA---------------------AACT--TTGAGGTGTAGCGC-TAAA-ATAAAAA--TTTTATTGTTA--AAGAATTCAAA--CGAA-AA-------AACAAGCGG--AAGCAAA----------ACCATTG--------------------GCAA-GCG-------------------AAA-C--GGCCC------ATTAAA--CGGATGAAAGAAACG------A--A-----CA-CTTG----------TTT--TATGTCAAATGCAT--T-AACAACAATTG--CCT-T-TT-------------------------------ATT--GTTT------------------------------CC-GATAACAG---GTG--------------GTCCGTT--------------------------------------------GGCTAGAGGATGGAGTCCAGGCCCCGGCGACGAGAGCGCTSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.................................................................................................TA--AAGAATTCAAA--CGAA-AA-------AACAAGC................................................................................................................................................................................................................................................................................................................................................................................................2615.00500000001100012000
....................................................................................................................................AGCGG--AAGCAAA----------ACCATTG--------------------GCAA-GCG-------------------A....................................................................................................................................................................................................................................................................................................................2714.00400000010000012000
............................................................................................................................................................................................................................................................................................................................................................................................................................TG--------------GTCCGTT--------------------------------------------GGCTAGAGGATGG...........................2213.00300000000001002000
..............................TA---------------------AACT--TTGAGGTGTAGCGC-TAAA-A.......................................................................................................................................................................................................................................................................................................................................................................................................................................................2513.00300000000003000000
.................................................................................................TA--AAGAATTCAAA--CGAA-AA-------AACAAGCGG--A...........................................................................................................................................................................................................................................................................................................................................................................................2912.00200000020000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCGTT--------------------------------------------GGCTAGAGGATGGA..........................2112.00200000000001001000
......................................................................................................................................................................................................................................TAAA--CGGATGAAAGAAACG------A--A-----CA-CT........................................................................................................................................................................................................................................................2511.00100000010000000000
...........................TATTA---------------------AACT--TTGAGGTGTAGCGC-TAAA-........................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00101000000000000000
.................................................................................................................................................A----------ACCATTG--------------------GCAA-GCG-------------------AAA-C--GG............................................................................................................................................................................................................................................................................................................2111.00100000001000000000
.....................................................................................A--TTTTATTGTTA--AAGAATTCAAA--CGAA-A...............................................................................................................................................................................................................................................................................................................................................................................................................2811.00100000001000000000
.....................................................................................................AAGAATTCAAA--CGAA-AA-------AACAAGCGG--A...........................................................................................................................................................................................................................................................................................................................................................................................2711.00100000001000000000
....................................................................................................................................AGCGG--AAGCAAA----------ACCATTG--------------------GCAA-GCG-------------------.....................................................................................................................................................................................................................................................................................................................2611.00100000000001000000
...........................................................TTGAGGTGTAGCGC-TAAA-ATAAAAA--T..............................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000000001000000
......................................................................................................AGAATTCAAA--CGAA-AA-------AACAAGCGG--A...........................................................................................................................................................................................................................................................................................................................................................................................2611.00100000001000000000
..................................................................................................A--AAGAATTCAAA--CGAA-AA-------.......................................................................................................................................................................................................................................................................................................................................................................................................1811.00101000000000000000
...............................A---------------------AACT--TTGAGGTGTAGCGC-TAAA-ATA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000000001000000
..................................................................................................A--AAGAATTCAAA--CGAA-AA-------AACAAGCGG--A...........................................................................................................................................................................................................................................................................................................................................................................................2811.00100000000000010000
.........................................................................................................ATTCAAA--CGAA-AA-------AACAAGCGG--AAG.........................................................................................................................................................................................................................................................................................................................................................................................2511.00100010000000000000
.................................................................................................................................................................TG--------------------GCAA-GCG-------------------AAA-C--GGCCC------ATTAAA--CGGA.......................................................................................................................................................................................................................................................................................2811.00100000000000001000
............................................................................................................................................................................................................................................CGGATGAAAGAAACG------A--A-----CA-CT........................................................................................................................................................................................................................................................2111.00101000000000000000
....................................................................................................................................AGCGG--AAGCAAA----------ACCATTG--------------------GCAA-GCG-------------------AA...................................................................................................................................................................................................................................................................................................................2811.00100000000000001000
..................................................................GTAGCGC-TAAA-ATAAAAA--TTTTATT........................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100100000000000000
...............................A---------------------AACT--TTGAGGTGTAGCGC-TAAA-AT......................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000000001000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................G---GTG--------------GTCCGTT--------------------------------------------GGCTAGA.................................1811.00100001000000000000
.........................................................................................TTTATTGTTA--AAGAATTCAAA--CGA..................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000000000001000
.....................................................................................................................................................................................................................................TTAAA--CGGATGAAAGAAAA.............................................................................................................................................................................................................................................................................1921.00220000000000000000
............................................................................................ATTGTTA--AAGAATTCAAA--CGAA-AA-------AACA...................................................................................................................................................................................................................................................................................................................................................................................................2811.00100000001000000000
..........................................................................................................................................................................................A-GCG-------------------AAA-C--GGCCC------ATTAAA--CGGAAA.....................................................................................................................................................................................................................................................................................2511.00100000000001000000
...........................................................TTGAGGTGTAGCGC-TAAA-AT......................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00101000000000000000
...........................................................................................TATTGTTA--AAGAATTCAAA--CGAA-AA-------AA.....................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000000000010000
.................CGGCGA--T-TATTA---------------------AACT--TTGAGGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100100000000000000
................................................................................................TTA--AAGAATTCAAA--CGAA-AA-------AACAAGCGG--A...........................................................................................................................................................................................................................................................................................................................................................................................3011.00100000010000000000
....................................................................................................................................................................................................................................ATTAAA--CGGATGAAAGAAAC.............................................................................................................................................................................................................................................................................2011.00101000000000000000
.................................................................................................................................................................TG--------------------GCAA-GCG-------------------AAA-C--GGCCC------ATTAAA--CGGAA......................................................................................................................................................................................................................................................................................2911.00100000001000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................ATAACAG---GTG--------------GTCCGTT--------------------------------------------GGCT....................................2111.00100000010000000000
......................................................................................................................................................................................................................................TAAA--CGGATGAAAGAAAC.............................................................................................................................................................................................................................................................................1811.00101000000000000000
............................ATTA---------------------AACT--TTGAGGTGTAGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00101000000000000000
..............................................................................................................AA--CGAA-AA-------AACAAGCGG--AAGCAAA----------ACC........................................................................................................................................................................................................................................................................................................................................................................2711.00100000000000010000
...................................................................................................................................AAGCGG--AAGCAAA----------ACCATTG--------------------GC..............................................................................................................................................................................................................................................................................................................................................2211.00100000000001000000
...TG------CTGCACCGGCGA--T-TATTA---------------------AACT--............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100010000000000000
......................................................................................................................................................................................................................................TAAA--CGGATGAAAGAAACG------A--A-----CA-CTTG----------T...........................................................................................................................................................................................................................................2811.00100000010000000000
.............................TTA---------------------AACT--TTGAGGTGTAGCGC-TAAA-A.......................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100010000000000000
.....................................................................................................................................................................................................................................TTAAA--CGGATGAAAGAAACG------A--A-----CA-CTTG----------T...........................................................................................................................................................................................................................................2911.00100000010000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................CCGTT--------------------------------------------GGCTAGAGGATGGAGT........................2111.00100000000000001000
..............................................................................................TGTTA--AAGAATTCAAA--CGAA-AA-------AAC....................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000000000001000
..............................TA---------------------AACT--TTGAGGTGTAGCGC-TAAA-AT......................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000000001000000
...................................................................................................................GAA-AA-------AACAAGCGG--A...........................................................................................................................................................................................................................................................................................................................................................................................1520.50100000010000000000
......................................................................................................................................................................................................................................TAAA--CGGATGAAAGAAACG------A--A-----A............................................................................................................................................................................................................................................................2220.50100000000001000000
........................................................................................TTTTATTGTTA--AAGA..............................................................................................................................................................................................................................................................................................................................................................................................................................1550.20100000000010000000
droSec2
ATATG------CTGCACCGGCGA--T-TATTA---------------------AACT--TTAAGGTGTAGCGC-TAA--ATTACAA--TTTTATTGTTA--AAGAATTCAAA--CGAA-AA-------AACAAGCGG--AAGCAAA----------ACCATTG--------------------GCAA-GCG-------------------AAA-C--GGTCC------ATTAAA--CGGATGAAAGAAACG------A--A-----CA-CTTG----------TTT--TATGTCAAATGCAT--T-AACAACAATTG--CCT-T-TT-------------------------------ATT--GTTT------------------------------CC-GATAACAG---GTT--------------GTCCGTT--------------------------------------------GGCTAGAGGATGGAGTCCAGGCCCCGGCGACGAGAGCGCTSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...............................................................................................................................................................................................................................................................................................................................................................................................................................................CGTT--------------------------------------------GGCTAGAGGATGGAGTC.......................2111.0010100
.............................................................................................................................................................................................................................................................................................................................................................................TT------------------------------CC-GATAACAG---GTT--------------GTCCGT.....................................................................................2111.0010001
...........................TATTA---------------------AACT--TTAAGGTGTAGCGC-TA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100
............................................................................................................................................AGCAAA----------ACCATTG--------------------GCAA-GCG-------------------A....................................................................................................................................................................................................................................................................................................................2111.0011000
.............................TTA---------------------AACT--TTAAGGTGTAGCGC-TA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0011000
.....................................................AACT--TTAAGGTGTAGCGC-TAA--A.......................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100
.................................................................................................................................................A----------ACCATTG--------------------GCAA-GCG-------------------AAA-C--GG............................................................................................................................................................................................................................................................................................................2111.0011000
............................................................................................................................................AGCAAA----------ACCATTG--------------------GCAA-GCG-------------------AAA-C--G.............................................................................................................................................................................................................................................................................................................2511.0011000
...................................................................TAGCGC-TAA--ATTACAA--TTTTATTGTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010001
....................................................................................................................................................................................................................................ATTAAA--CGGATGAAAGAAAT.............................................................................................................................................................................................................................................................................2011.0010100
.................................................................................................................................................A----------ACCATTG--------------------GCAA-GCG-------------------AAA-C--G.............................................................................................................................................................................................................................................................................................................2011.0010010
.............................................................................................................................................................CCATTG--------------------GCAA-GCG-------------------AAA-C--GGT...........................................................................................................................................................................................................................................................................................................2011.0010010
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAGAGGATGGAGTCCAGGC..................2011.0010100
...................................................................................................................................AAGCGG--AAGCAAA----------ACCATT.....................................................................................................................................................................................................................................................................................................................................................................1911.0010010
................................................................................................TTA--AAGAATTCAAA--CGAA-A...............................................................................................................................................................................................................................................................................................................................................................................................................1911.0011000
.........................................................................................................ATTCAAA--CGAA-AA-------AACAAGCGG--............................................................................................................................................................................................................................................................................................................................................................................................2211.0010010
.............................................................................................................AAA--CGAA-AA-------AACAAGCGG--AAGC........................................................................................................................................................................................................................................................................................................................................................................................2211.0010010
............................................................TAAGGTGTAGCGC-TAA--ATTAC...................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010001
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAGAGGATGGAGTCCAGGCCCCGG.............2611.0011000
dm3
ATATG------CTGCACCGGCGA--C-TATTA---------------------AACT--GTAAGGTGTAGCGC-TAA--ATTACAA--TTTTATTGTTA--AAGAATTCAAA--CGAA-AAAAA----AACAAGCGG--AAGCAAA----------ACCATTG--------------------GCAA-GCG-------------------AAA-T--GGCCC------ATTAAA--CGGATGAAAGAAACG------A--A-----GA-CTTG----------TTT--TATGTCAAATGCAT--T-AACAACAATTG--CCT-T-TT-------------------------------ATT--GTTT------------------------------CC-GATAACAG---GTT--------------ATCCGTT--------------------------------------------GGCTAGAGAATGGAGTCCAGGCCCCGGCGACGAGAGCGCTSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
......................................................................................................................................................................................................................................TAAA--CGGATGAAAGAAACG------A--A-----GA-CT........................................................................................................................................................................................................................................................25117.001700000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000030101000000000000000000100100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................TTAAA--CGGATGAAAGAAACG------A--A-----GA-CT........................................................................................................................................................................................................................................................26115.00150000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003010800000000000000020100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................A--CGGATGAAAGAAACG------A--A-----GA-CTTG----------TTT--.......................................................................................................................................................................................................................................27112.00120000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008000400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................TA---------------------AACT--GTAAGGTGTAGCGC-TAA--AT......................................................................................................................................................................................................................................................................................................................................................................................................................................................2518.0080000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000400000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010100000
...........................................................GTAAGGTGTAGCGC-TAA--ATTACA..................................................................................................................................................................................................................................................................................................................................................................................................................................................2317.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000100500000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................AAA--CGGATGAAAGAAACG------A--A-----GA-CT........................................................................................................................................................................................................................................................2417.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................TACAA--TTTTATTGTTA--AAGAATTCAAA--C....................................................................................................................................................................................................................................................................................................................................................................................................................2815.0050000000000000000000000000000000000000000000000000000000000000000000000000000011210000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................CGGATGAAAGAAACG------A--A-----GA-CTTG----------TTT--.......................................................................................................................................................................................................................................2615.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000500000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................TAAA--CGGATGAAAGAAAC.............................................................................................................................................................................................................................................................................1814.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................ATTG--------------------GCAA-GCG-------------------AAA-T--GGCCC------ATTAAA--C..........................................................................................................................................................................................................................................................................................2714.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................T--GTAAGGTGTAGCGC-TAA--AT......................................................................................................................................................................................................................................................................................................................................................................................................................................................2013.0030000000000100000000000000000000000000000000000000000000000000000000000000000001000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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............................................................TAAGGTGTAGCGC-TAA--ATTACAA--TT.............................................................................................................................................................................................................................................................................................................................................................................................................................................2513.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
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...........................TATTA---------------------AACT--GTAAGGTGTAGCGC-.............................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
droEre2
ATATG------CTACACCGGCGA--T-TATTA---------------------AACT--GTAAGGTGTAGCGC-TAA--ATTACAA--TTTTATTGTTA--AAGAATTCAAA--CGAA-AA-------C--AAGCGG--AAACAAAAGCAAA---AACCATTG--------------------GCAA-GCG-------------------AA--A--GGCCC------ATTAAA--CGGATGAAAGAAAAG------A--T-----CA-CTTG----------TTT--TATGTCAAATGCAT--T-AACAACAATTG--CCT-T-TT-------------------------------ATT--GTGT------------------------------CC-GATAACAG---GTT--------------GTTCGTT--------------------------------------------AGCTAGAGAATTGAGTCCAGGCCCCGGCGACGAGAGCGCTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.....................GA--T-TATTA---------------------AACT--GTAAGGTGTA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................2213.0030000120
......................A--T-TATTA---------------------AACT--GTAAGGTGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000020
.....................GA--T-TATTA---------------------AACT--GTAAGGTGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000110
............................ATTA---------------------AACT--GTAAGGTGTAGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000100
..............................TA---------------------AACT--GTAAGGTGTAGCGC-TAA--AT......................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0011000000
..................................................................................................................................................................................................................................................................................................................................................................................................................TAACAG---GTT--------------GTTCGTT--------------------------------------------AGCTA...................................2111.0010000010
.........................T-TATTA---------------------AACT--GTAAGGTGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000010
......................A--T-TATTA---------------------AACT--GTAAGGTGTA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000010
.........................................................................................................ATTCAAA--CGAA-AA-------C--AAGCGG--............................................................................................................................................................................................................................................................................................................................................................................................2011.0011000000
......................................................................CGC-TAA--ATTACAA--TTTTATTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000010
.............................................................AAGGTGTAGCGC-TAA--ATTACAA--TT.............................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000010
............................................................................................................CAAA--CGAA-AA-------C--AAGCGG--AAACAA......................................................................................................................................................................................................................................................................................................................................................................................2311.0010000100
...........................................................................................................................................................................................................................CCC------ATTAAA--CGGATGAAAGA................................................................................................................................................................................................................................................................................2011.0010000100
.........................T-TATTA---------------------AACT--GTAAGGTGTA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000010
......................................................................................................................................................AA---AACCATTG--------------------GCAA-GCG-------------------AA--A--G.............................................................................................................................................................................................................................................................................................................2111.0010000010
droYak3
ATATG------CTACACCGGCGA--T-TATTT---------------------AACT--GTAAGGTGTAGCGC-TAAA-ATTACAA--TTTTATTGTTA--AAGAATTCAAA--AGAA-AA-------CACAAGCGA--AAGCAAA----------ACCATTG--------------------GCAA-GCG-------------------AAAAA--GGCCC------ATTAAA--CGGATGAAAGAAGAG------A--T-----CA-CTTG----------TTT--TATGTCAAATGCAT--T-AACAACAATTG--CCT-TTTT-------------------------------ATT--GTTT------------------------------CC-GATAACAG---GTT--------------ATTCGTTA------------GC-TGTT-----------------------TAGCTAAAGGATGGAGTCCAGGCCCCGGCGACGAGAGCGCTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
....................................................................................................................................................................................................................................ATTAAA--CGGATGAAAGAAG..............................................................................................................................................................................................................................................................................1912.00200000020000
................................................................................................................................................AA----------ACCATTG--------------------GCAA-GCG-------------------AAAA.................................................................................................................................................................................................................................................................................................................2011.00100000010000
........................................................................................................................................................................................................................................................GAG------A--T-----CA-CTTG----------TTT--TATGTCAAAT.............................................................................................................................................................................................................................2411.00101000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................TT--------------ATTCGTTA------------GC-TGTT-----------------------TAGCT....................................2111.00101000000000
...................................................................TAGCGC-TAAA-ATTACAA--TTT............................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100100000000
...................................................................................CAA--TTTTATTGTTA--AAGAATT...........................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100100000000
....................................................................................................................................................................................................................................ATTAAA--CGGATGAAAGAAGAG------A--T-----CA-CTT.......................................................................................................................................................................................................................................................2811.00100000010000
...........................TATTT---------------------AACT--GTAAGGTGTAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00101000000000
....................CGA--T-TATTT---------------------AACT--GTAAGGTGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00101000000000
....................................................................................................................................................................................................................................ATTAAA--CGGATGAAAGAAGA.............................................................................................................................................................................................................................................................................2011.00100000010000
...........................TATTT---------------------AACT--GTAAGGTGTAGCGC-TAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00101000000000
.................................................................................................................................................................................................................................................................A--T-----CA-CTTG----------TTT--TATGTCAA...............................................................................................................................................................................................................................1911.00101000000000
droEug1
ATATG------CTACACCAGCGA--T-TATTA---------------------AACT--GTAAGGTGTAGCTC-TAAA-ATTAAAA--TTTTATTGTTA--AAGAATTCAAA--CGAA-AA-------CA-AAGCGG--AAGCAAA----------CTCATTG--------------------GCAA-ACA-------------------AAA-A--GGCCC------ATTAAA--CGGATGAAAGAAGA----------------TA-TTTGT---ATT--TTTT--TATGTCAAATGCAT--T-AACAACAATTG--CTT-T-TT-------------------------------ATT--GTTT------------------------------CC-GATAACAG---TTC--------------ACTCGTT--------------------------------------------AGCTAGAGGATTGCATCCAGGCCCCGACGACGAGAGCGCTSizeHit CountTotal NormTotal
No Reads
droBia1
ATATG------CTACACCGGCGA--T-TATTA---------------------CACT--GTAAGGTGTAGCTC-TAAA-ATTAAAA--TTTTATTGTTA--AAGAATTCAAA--CGAA-AA-------CA-AAGCGGTTGAGCAAA----------ACCATTG--------------------GCAA-GCG-------------------AAA-A--GGCCC------ATTAAACACGGATGAAAGAAGAG------ATTGAGT------TT---GAGTTTG-TTTCATACGTCAAATGCAT--T-AACAACAATTG--CCT-T-TT----------------------------TTTATT--GTTT------------------------------CC-GATAACAG---TTC--------------GATGGTT--------------------------------------------GGCTAGAGGATTGAATCCAGGCCCCGGCGTCGGGAGCGCTSizeHit CountTotal NormTotal
No Reads
droTak1
ATACG------CTACACCGGCGA--T-TATTA---------------------AACT--GTAAGGTGTAGCTC-TAAA-ATTAAAA--TTTTATTGTTA--AAGAATTCTAAAACGAA-AA-------CA-AAGCGG--AAGCAAA----------ACCATTG--------------------GCAA-GCG-------------------AAA-A--GGCCC------ATTAAA--CGGATGAAAGAAGAT------A--C-----GA-TTTG----------TTT--TATGTCAAATGCAT--T-AACAACAATTG--CCT-T-TT-------------------------------ATT--GTTT------------------------------CC-GATAACAG---TTG--------------ATTCGTT--------------------------------------------AGCTAGAGGATTGAATCCAGGCCCCGGCGACGAGAGCGCTSizeHit CountTotal NormTotal
No Reads
droEle1
ATATG------CTACACCGACGA--T-TATTA---------------------AACT--ATAAGGTGTAGCTC-TAA--ATTACAA--TTTTATTGTTA--AAGAATTCAAA--AGAA-AA-------ACGAAGCGG--AAGCAGAAGCAAT---AACCATTG--------------------GCCA-GCG-------------------AAA-A--AGCCC------ATTAAA--CGGATGAAAGAAAGA------A-AGCGTATTA-CTTG----------TTT--TATGTCAAATGCATTTT-AACAACAATTG--CCT-T-TT-------------------------------ATT--GTTT------------------------------CC-GATAACAG---TTG--------------GTTCGTGTGTGTTCATTCTAGCT-----GAA-------------GGCTAGAGGCTAGAGGATTGAATCCAGGCCCCGGCGACGAGAGCGCTSizeHit CountTotal NormTotal
No Reads
droRho1
ATATG------CTACACCGACGA--T-TATTG---------------------AACT--GTAAGGTGCAGCCCTTAAA-ATTACAA--TTTTATTGTTA--AAGAATTCAAA--AGAA-AA-------C-------G--AAGCAAA----------AACATTG--------------------GCAA-GCG-------------------AAA-A--GGCCC------ATTAAA--CGGATAAAAGAAAAG------A--T-----AA-CTTG----------TTT--TATGTCAAATGCAT--T-AACAACAATTG--CCT-T-TT-------------------------------ATT--GTTT------------------------------CC-GATAACAG---TTC--------------GTTCGTT--------------------------------------------AGCTAGAGGATTGAATCCAGGCCCCGGCGACGAGACCGCTSizeHit CountTotal NormTotal
No Reads
droFic1
ATATG------CTACACCGATGA--T-TATTA---------------------AACT--GTAAGGTGTAGCTC-TAAA-ATTACAA--TTTTATTGTTA--ACAAATTTAAA--AGAA-AA-------CA-AAGCAG--AAGCA-A----------ACCATTG--------------------GCAA-GCG-------------------AAA-A--GGCCC------ATTAAA--CGGATGAAAGAAAAG------AAAG-----AA-TTTG----------TTT--TATGTCAAATGCAT--T-AACAACAATTG--CCT-T-TT-------------------------------ATT--GTTT------------------------------CC-GATAACAG---ATC--------------GTTCGTT--------------------------------------------AGCTAGAGGATTGAATCCAGACCCCGGCGCCGAGAGCGTTSizeHit CountTotal NormTotal
No Reads
droKik1
ATACGACTAGGCTACACCGACTA--T-TATTA---------------------AACT--GTAAGGTGTAGCTG-TAAA-ATTACAA--TTTTATTGTTA--AAGAATTCAAA--AGAA-AA-------CA-A-------AAGCAAAAGATGA---CCCCATTG--------------------GCAAAGCG-------------------ACAAAGAAGCCC------ATTAAA--CGGATGAAAGAAGAA---------A-----CATTTTG----------TTT--TATGTCAAATGCAT--C-AACAACAATTG--CCTGT-TT----------------------------TTTATT--TTAT------------------------------CCGGATAACAG---TTCG-------------ATTCGATA------------------------------------------TAGCTAGAGGATTGAGTCCAGGCCCCGGCGACGAGAACGCTSizeHit CountTotal NormTotal
No Reads
droAna3
ATATG------CTACACCGAATA--T-TATTA---------------------AACAAGGCAAGGTGTAGCCC-TAAA-ATTACAA--TTTTATTGTTA--AAGAACTCAAG--CGCC-AA-------G---------------AA----------ACCATTG-------------------------------------------------------GCCC------ATTAAA--CGGATAAATGAAAACCACACAC--C-----CA-CTCG----------ATT--TATGTCAAATGCAT--T-AAC---AATTT--TAT-T-TT---------------ATTGTTTTTGTTTTTTTTT--TTTA----------------------TGTTTTTTGT-GATAACAGAG-TTT-GTTTTTTTTTTTGATTCGAA--------------------------------------------AGCTAGAGGATTGAATCCACGCCCCGGCGACGAGAGCGCTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
......................A--T-TATTA---------------------AACAAGGCAAGGTGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000010
.............................................................................................TTGTTA--AAGAACTCAAG--CGCC-AA-------G---------------A......................................................................................................................................................................................................................................................................................................................................................................................2511.001000001
..........................................................................................................................................................................................................................................................................................................................................................................................................................................TGATTCGAA--------------------------------------------AGCTAGAGGATT............................2111.001010000
.........................................................AGGCAAGGTGTAGCCC-TAAA-A.......................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000001
.................CGAATA--T-TATTA---------------------AACAAGGCAAGGTGTA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001000010
.............................TTA---------------------AACAAGGCAAGGTGTAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000010
......................A--T-TATTA---------------------AACAAGGCAAGGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001010000
............................................................................................ATTGTTA--AAGAACTCAAG--CGC..................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000010
............................ATTA---------------------AACAAGGCAAGGTGTAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000010
droBip1
ATACG------CTACACCGAATA--T-TATTA---------------------AACG--GCAAGGTGTAGCCC-TAAA-ATTAAAA--TTTTATTGTTA--AAGAACTCA-----------------------GCGG--CAAG-AA----------CCCATTG--------------------GCT---CG-------------------AGA-G-GGGCCC------ATTAAA--CGGATAAAAGAAAA----------------CA-TACG----------ATT--TATGTCAAATGCAT--T-AACAACAATTG--GCT-T-TT-------------------------------ATT--GTTTTTTTT-------------------------TC-GATAACAGAGTTTTG-------------ATTCGAA--------------------------------------------AGCTAGAGGATTGAATCCACGCCCCGGCGACGGGAGCGCTSizeHit CountTotal NormTotal
No Reads
dp5
CTATACA-----TTTAC---TTA--T-TCTTA---------------------AACT--GTAAAGTGTAGGATGTAAA-ATTAAAA--TTTTATTGTTACCACAAATTCTAA--CAAA-AA-------CAGAAACAG--ATTCAAAAACTAATACAACAATTG--------------------GAAAATTGAAAAT------------------T--TGCCC------ATTAAAACAGAATGAAAGAAACA----CAA--A-----CA-CTTGTGGAATT-GTTTT--TCTGTCAAATGCAT--TCAACAACAATTG--CAT-T------------------------ATTATTTTTTATTTTGTTT------------------------------CC-CACTACAT---TTTG-------------ATTTGTTT---------------TGTTT----------------------AAGCTAGAGGATTGAATCCAAGCCACGTCGGCGCGAGCGCTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.....................................................AACT--GTAAAGTGTAGGATGTAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010001000000
.....CA-----TTTAC---TTA--T-TCTTA---------------------AACT--G...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
droPer2
ATTTA------CT--------TA--T-TCTTA---------------------AACT--GTAAAGTGTAGGATTTAAA-ATTACAA--TTTTATTGTTACCACAAATTCTAA--CAAA-AA-------CAGAAACAG--ATTCAAAAACTAA---TACAATTG--------------------AAAAATTGGAAAT------------------T--TGCCC------ATTAAAACAGAATGAAAGAAACA----CAA--A-----CA-CTTGTGGAATT-GTTTT--TCTGTCAAATGCAT--TCAACAACAATTG--CAT-T------------------------ATTACTTTTTATTTTGTTT------------------------------CC-CACAACAT---TTTG-------------ATTTGTTT---------------T-TTT----------------------AAGCTAGAGGATTGAATCCAAGCCACGTCGGCGCGAGCGCTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.....................................................................................................................................................................................................................................TTAAAACAGAATGAAAGAAACA----CA......................................................................................................................................................................................................................................................................2412.002000002
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAATCCAAGCCACGTCGGCG........2211.001100000
...........CT--------TA--T-TCTTA---------------------AACT--GTAAAGTGTAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001010000
droWil2
ATATA------TACCATATATGAAATATATTAAAACAAAAAACAAAAAAAAGAAATT--GTAAAGTATAGGGC-TACATATACCAA--TTTTATTGTTA--AACAATTCAAA--AACAAAAAAA----GAAAAGAGA--AAGAAAA----------AAC---GAAAATTGCAGTAATGCAACAACAA-AAG-------------------A-A-C--AACCC------ATTAAA--CGGATGAAAGAACA----------------CA-CTTG----------TTT--TATGTCAAATGCAA--C-CACAACAATTTTGCAC-A------------------------TTTGTTTTTTATT--ATTA------------------------------TA-ATTAAATG---TTT-GTTTTTAGTTTTAAGT-------------------------GAAAGGACATGCGTATGGA-CCCGGCTAGAGGATTGAGTCCAGGCCACGACGACGAGATCGTTSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.......................................................................................................................................................................................................................................AAA--CGGATGAAAGAACA----------------C............................................................................................................................................................................................................................................................1813.00330000
......................................................................................................................................................................................................................................TAAA--CGGATGAAAGAACA----------------CA-CTTG----------TTT--.......................................................................................................................................................................................................................................2712.00220000
.............................................................................................................................................GAAAA----------AAC---GAAAATTGCAGTAAT......................................................................................................................................................................................................................................................................................................................................................2311.00100010
...........................................AAAAAAAAGAAATT--GTAAAGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100010
........................................AACAAAAAAAAGAAATT--GTAAAGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100010
........................................................................................................................................................................................................................................AA--CGGATGAAAGAACA----------------CA-CT........................................................................................................................................................................................................................................................2011.00110000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGGACATGCGTATGGA-C..........................................1911.00100001
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGATTGAGTCCAGGCCACGA.............2111.00100001
............................................................................................................................................................................................AAG-------------------A-A-C--AACCC------ATTAAA--CGGA.......................................................................................................................................................................................................................................................................................2111.00100010
..................................................................ATAGGGC-TACATATACCAA--TTTT...........................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100010
....................................................................................................................................................................................................................................ATTAAA--CGGATGAAAGAACA----------------CA-CTTG----------T...........................................................................................................................................................................................................................................2711.00110000
..............................................................AAGTATAGGGC-TACATATAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00101000
......................................................ATT--GTAAAGTATAGGGC-TA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100010
.....................................................................................................................................................................................................................................TTAAA--CGGATGAAAGAACA----------------.............................................................................................................................................................................................................................................................1911.00100100
.....................................................AATT--GTAAAGTATAGGGC-TA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100010
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGGA-CCCGGCTAGAGGAT.............................2111.00101000
....................................................AAATT--GTAAAGTATAGGGC-.............................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100001
....................................................................................................................................................................................................................................ATTAAA--CGGATGAAAGAAC..............................................................................................................................................................................................................................................................................1911.00110000
..............................................................................................................................................................................................G-------------------A-A-C--AACCC------ATTAAA--CGGATGAAAGA................................................................................................................................................................................................................................................................................2611.00100100
.........................................................................................................................................................................................................................AACCC------ATTAAA--CGGATGAAAGAAC..............................................................................................................................................................................................................................................................................2411.00110000
........................................................T--GTAAAGTATAGGGC-TACA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00110000
..................................................................ATAGGGC-TACATATACCAA--T..............................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100010
.....................................................................................................................AAAAAAA----GAAAAGAGA--AAGAAAA----------AA.........................................................................................................................................................................................................................................................................................................................................................................2511.00100100
.....................................................AATT--GTAAAGTATAGGGC-.............................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100010
...................................................................TAGGGC-TACATATACCAA--TTTTATTGT......................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00101000
droVir3
AAATA------TTGCACTTGCTA--T-TTGT----------------------AACT--GTGAACTGTAGCCCCTAAA-ATTAATACGCATTATTGTTA--AACAATTCAAG--AGAC-AA---GCAACA-AAA-A---GAGAG-A---------AA-CAATG--------------------A----------ATTTCCCCCTCCCTCAAA-----AAATA------ATTAAA--CGGCGATAAAAA---------A--A-----CA-CTTG----------TTT--TATGTCAAATGCAA--C-AGCAACAATTG--CCC-TTTT-------------------------------AT---ATTT------------GTATATATGATTTGATTTGT-GGTTAAAG---T--------------------------------------------------------GTTAAGC-ACCAACTAGAGGATTGAATCCAGGCCGCGACGGCGCGAACGTTSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.................................................................................................TA--AACAATTCAAG--AGAC-AA---GC.........................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000100000000000000000000000
...................................................................................................................GAC-AA---GCAACA-AAA-A---GAGA........................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000000000000000000000000000000000000010
............................................................................AA-ATTAATACGCATTATTGTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
...............ACTTGCTA--T-TTGT----------------------AACT--GTGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000100000000000000000000000000000000000
..........................................................................................................................................................................................................CTCCCTCAAA-----AAATA------ATTAAA--CGGCGAT....................................................................................................................................................................................................................................................................................2811.001000000000000000000000000000000000000001000000000000000000000000
.............................................................GAACTGTAGCCCCTAAA-AT......................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000100000000000000000000000000000000000000000000
........................................................T--GTGAACTGTAGCCCCTAAA-........................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000001000000000000000000000000000000000000
......................A--T-TTGT----------------------AACT--GTGAACTGTAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000010000000000000000000000000000000
....................CTA--T-TTGT----------------------AACT--GTGAACTGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000100000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................TTT------------GTATATATGATTTGATTT..........................................................................................................................2111.001000000000000000000000000000000000000000100000000000000000000000
...................................................................................................................GAC-AA---GCAACA-AAA-A---GAGAG-A---------............................................................................................................................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
AAATA------TTGCACTTGCTA--T-TTGT----------------------AAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000100000000000000000000000000000000000000000000000000000000000
..................................................................................AATACGCATTATTGTTA--AACAATTC..........................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000100000000000000000000000000000000000000000000000000000000000
.....................................................................................................................C-AA---GCAACA-AAA-A---GAGAG-A---------............................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000001000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................A---------A--A-----CA-CTTG----------TTT--TATGTCAA...............................................................................................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................AAATA------ATTAAA--CGGCGATAAAAA---------A--A-----CA-C.........................................................................................................................................................................................................................................................2811.001000100000000000000000000000000000000000000000000000000000000000
......................................................ACT--GTGAACTGTAGCCCCTAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000001000
...................................................................................................................GAC-AA---GCAACA-AAA-A---GAGAG-......................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000010000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................TGT-GGTTAAAG---T--------------------------------------------------------GTTAAGC-ACCAAC.....................................2511.001000000000000000000000000001000000000000000000000000000000000000
............................TGT----------------------AACT--GTGAACTGTAGCCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000010000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCCGCGACGGCGCGAACGT.2111.001000000000000000000000000000001000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................ATATATGATTTGATTTGT-GG.....................................................................................................................2011.001000000000000000000000000000000010000000000000000000000000000000
......................A--T-TTGT----------------------AACT--GTGAACTGTA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
..................................................................................................A--AACAATTCAAG--AGAC-AA---G..........................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000001000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGAATCCAGGCCGCGACG...........2111.001000000000000000001000000000000000000000000000000000000000000000
droMoj3
ATATAGA---TGTACACTTGATA--T-TTAT----------------------CAAT--GTAC-TCGTAGCCCTTTAA-ATTAATACTTTTTATTGTTA--AATAATTGAAG--AGAC-AAACAGCAACA-AAAAA---GAGAT-A---------AA-CAATG--------------------GAGA-AAA-------------------A-A-A--TTCCCAAAAATATTAAA--TGGCTATATAAAAAG------C--A-----AA-C-TG----------TTT--TATGTCAAATGCAA--C-AACAACAATTG--CCT-TTTTATTATCAATTCTATAA-------------TTATT--ATTATTTTTTACATATTTATATTTGATTTGATTCGC-GTTACTTTAG-TGT---GTGTGTGT-------------------------------------------GTGAGGC-ACAAGCTAGAGGATTGAATCCAGGCCGCGACGACGCGAACGCTSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.............................................................AC-TCGTAGCCCTTTAA-ATT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
...................GATA--T-TTAT----------------------CAAT--GTAC-TCGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000010
.........................................................................TTTAA-ATTAATACTTTTTATTGTTA--AATA..............................................................................................................................................................................................................................................................................................................................................................................................................................2911.001100000
...............................................................................................................................................................................................................................................................................TG----------TTT--TATGTCAAATGCAA--A-.....................................................................................................................................................................................................................2011.001000100
.............................................................AC-TCGTAGCCCTTTAA-ATTA....................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
..ATAGA---TGTACACTTGATA--T-TTAT----------------------CAAT--GT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.001100000
.......................................................................................................................................................................................................................................................AAAG------C--A-----AA-C-TG----------TTT--TATGTCAAA..............................................................................................................................................................................................................................2311.001100000
....................ATA--T-TTAT----------------------CAAT--GTAC-TCGTAGCCCTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000001
droGri2
AAATA------TTGCACTTGCTA--T-TTGTA---------------------AACT--GTAAACTGTAGCCC-TAAA-TTTAACA--CTTAATTGTTA--AACAATTCAAG--CAAA----------CA-A-------AAGAA-C---------AA-CAATG--------------------GAAA-CCC-------------------AAA-A----CGC------ATTAAA--CGGAGAAAAGAA------------------CA-CTTG----------TTT--TATGTCAAATGCA------ACAACAAATG--CTG-T-TT-------------------------------CTT--TTTT--------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
.............................................................................................................................................................................................................................................................................CTTG----------TTT--TATGTCAAATGCA------ACAACA..............................................................................................................................................................................................................2611.00110
.........................................................................................................ATTCAAG--CAAA----------CA-A-------AAGAA-C---------AA-CA.......................................................................................................................................................................................................................................................................................................................................................................2411.00110

Generated: 05/18/2015 at 10:29 PM