ID:

dsi_15791

 Coordinate:

2l:391175-391405 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-16.2 -15.8 -15.8

Flybase annnotation

Antisense to CDS [2l_391382_392425_-]; Antisense to three_prime_UTR [2l_391278_391381_-]; Antisense to exon [2l_391278_392456_-]; three_prime_UTR [2l_390475_391361_+]; exon [2l_389629_391361_+]

No Repeatable elements found

Sense Strand Reads

#############################################################################################################################################################################################################################################----------------------------------------------------------------------------------------------
CATACATTCAGAACAGTGTAACTGCAGTCCCACGTAGTCTGTAATCGAACGTAATTATTAAGAACACGAGATTGGCGGAAACACAAGAACATCAGCAAAAATACATTAAAGATAAAAACTAAGCTGTTTTCGTTATGGGTCTGGGATTTTTTGTTTGTATTTTGGCATTTTAAAAACTTAATACTAAATTACTTGAATTAAACTTTATTCTTTGTAAATATAGATACTCCTGAACTTAATTTTATTCTTATTTGTTGCTAAAACTCCATGACGTTTTCCAGATGGCGTTGCTTAAAGAATCGGCACTCCTCGCGAATTACTTCGCCGGATT
***************************************************..........(((((.((((((..((((..((...(((...((((..........................))))..)))....))..)))).)))))).)))))..........********************************************************************************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 M024
male body		 SRR553487
NRT_0-2 hours eggs
 SRR902009
testis
 M025
embryo
 SRR902008
ovaries
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 M023
head
 O002
Head
 GSM343915
embryo
 M053
female body
...................................................TAATTATTAAGAACACGAGATTGGC............................................................................................................................................................................................................................................................... 25 0 1 7.00 7 4 1 0 1 0 0 0 0 1 0 0 0 0
.......................................................TATTAAGAACACGAGATTGGCGGA............................................................................................................................................................................................................................................................ 24 0 1 5.00 5 3 1 0 0 0 0 0 1 0 0 0 0 0
.......................................................................TTGGCGGAAACACAAGAACATCAGC........................................................................................................................................................................................................................................... 25 0 1 4.00 4 2 2 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................ATTTTTTGTTTGTATTTTGGC..................................................................................................................................................................... 21 0 1 3.00 3 0 0 0 3 0 0 0 0 0 0 0 0 0
............................................TCGAACGTAATTATTAAGAACACGAGA.................................................................................................................................................................................................................................................................... 27 0 1 3.00 3 1 0 0 0 0 0 0 0 2 0 0 0 0
.......................................................TATTAAGAACACGAGATTGGCGGAAA.......................................................................................................................................................................................................................................................... 26 0 1 2.00 2 0 1 0 0 0 0 1 0 0 0 0 0 0
.......................................TGTAATCGAACGTAATTATTAAGAACA......................................................................................................................................................................................................................................................................... 27 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0 0
......TTCAGAACAGTGTAACTGCAGTCCC............................................................................................................................................................................................................................................................................................................ 25 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0
.......TCAGAACAGTGTAACTGCAGTCCCACGT........................................................................................................................................................................................................................................................................................................ 28 0 1 2.00 2 1 0 0 1 0 0 0 0 0 0 0 0 0
.................................................CGTAATTATTAAGAACACGAGATTGGC............................................................................................................................................................................................................................................................... 27 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0 0
.............................................................GAACACGAGATTGGCGGAAACACAA..................................................................................................................................................................................................................................................... 25 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0 0
......................................................................ATTGGCGGAAACACAAGAACATCAGC........................................................................................................................................................................................................................................... 26 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................ACGAGATTGGCGGAAACACAAGAAC................................................................................................................................................................................................................................................. 25 0 1 2.00 2 0 0 0 0 0 2 0 0 0 0 0 0 0
.......TCAGAACAGTGTAACTGCAGTCCCACG......................................................................................................................................................................................................................................................................................................... 27 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................................TTGGCGGAAACACAAGAACATCAGCAAAAA...................................................................................................................................................................................................................................... 30 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................TCAGCAAAAATACATTAAAGA........................................................................................................................................................................................................................... 21 0 1 2.00 2 0 0 0 2 0 0 0 0 0 0 0 0 0
..............................................................AACACGAGATTGGCGGAAAC......................................................................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
......TTCAGAACAGTGTAACT.................................................................................................................................................................................................................................................................................................................... 17 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................TATTAAGAACACGAGATTGGCGG............................................................................................................................................................................................................................................................. 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................TTGGCGGAAACACAAGAACATCAGCAAAA....................................................................................................................................................................................................................................... 29 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................TAAGAACACGAGATTGGCGGAAACACAA..................................................................................................................................................................................................................................................... 28 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0
...............................................................ACACGAGATTGGCGGAAA.......................................................................................................................................................................................................................................................... 18 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.......................................................TATTAAGAACACGAGATTGGCGGAAACA........................................................................................................................................................................................................................................................ 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...........................................................AAGAACACGAGATTGGCGGAAACACAAG.................................................................................................................................................................................................................................................... 28 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.................................GTAGTCTGTAATCGA........................................................................................................................................................................................................................................................................................... 15 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................TATGGGTCTGGGATTCATTGGT................................................................................................................................................................................ 22 3 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0
........................................................ATTAAGAACACTAGATTGGCGGAG........................................................................................................................................................................................................................................................... 24 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.........................................................TTAAGAACACGAGATTGGCGGAAT.......................................................................................................................................................................................................................................................... 24 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
..............................................................AACACGAGATTGGCGGAAA.......................................................................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
........................................................ATTAAGAACACGAGATTGGCGGAAAC......................................................................................................................................................................................................................................................... 26 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
.......................................TGTAATCGAACGTAATTATTAAGAACACG....................................................................................................................................................................................................................................................................... 29 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................AACACGAGATTGGCGGAAACACAAGA................................................................................................................................................................................................................................................... 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
............................CCCACGTAGTCTGTAATCGAAC......................................................................................................................................................................................................................................................................................... 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.......ACAGAACAGTGTAACTGCAGTCCCACGT........................................................................................................................................................................................................................................................................................................ 28 1 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0
..........................................................TAAGAACACGAGATTGGCGGAAACA........................................................................................................................................................................................................................................................ 25 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0
...............................................................ACACGAGATTGGCGGAAACAC....................................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
...........................................ATCGAACGTAATTATTAAGAACACGAGT.................................................................................................................................................................................................................................................................... 28 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................TGGCGTTGCTTAAAGAATCG............................. 20 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0
.......................................TGTAATCGAACGTAATTATT................................................................................................................................................................................................................................................................................ 20 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0
..........................................................TAAGAACACGAGATTGGCGGTA........................................................................................................................................................................................................................................................... 22 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................GTAAATATAGATACTCCTGAACT............................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..........................GTCCCACGTAGTCTGTAATCGAAC......................................................................................................................................................................................................................................................................................... 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.........................................................TTAAGAACACGAGATTGGCGGAAACA........................................................................................................................................................................................................................................................ 26 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0
...........................................................................CGGAAACACAAGAACATCAGC........................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
..................................................................................................................................................TTTTTAGTTTGTATTTTGGCA.................................................................................................................................................................... 21 1 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0
.......TCGGAACGGTGTAACTGCGGTC.............................................................................................................................................................................................................................................................................................................. 22 3 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0
...............................................................................................................................................................................................................................................................................................TTGCTTAAAGAATCGGCA.......................... 18 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0
..................................................GTAATTATTAAGAACACGAGATTGGC............................................................................................................................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
................................................................CACGAGATTGGCGGAAACACAAGA................................................................................................................................................................................................................................................... 24 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
.................................................CGTAATTATTAAGAACACGAGATTGGCGGA............................................................................................................................................................................................................................................................ 30 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................TGTTTTCGTTTTGGGCCTGGGATTTTT.................................................................................................................................................................................... 27 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
................................................................CACGAGATTGGCGGAAACACA...................................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
........................................................................................ACATCAGCAAAAATACATTAAAGA........................................................................................................................................................................................................................... 24 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
................................................................CACGAGATTGGCGGAAACA........................................................................................................................................................................................................................................................ 19 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
.......................................TGTAATCGAACGTAATTATTAAGAAC.......................................................................................................................................................................................................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................AACACGAGATTGGCGGAAACA........................................................................................................................................................................................................................................................ 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0
..............................CACGTAGTCTGTAATCGAACGTAA..................................................................................................................................................................................................................................................................................... 24 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0
................................................................................................................................................................................................................................................................................................TGCTTAAAGAATCGGCACTCC...................... 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0
...................................................TAATTATTAAGAACACGAGATTGGCGGA............................................................................................................................................................................................................................................................ 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
......................................................TTATTAAGAACACGAGATTGGCGGAAA.......................................................................................................................................................................................................................................................... 27 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0
....................................................................AGATTGGCGGAAACACAAGAACATCA............................................................................................................................................................................................................................................. 26 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
.......................................................................TTGGCGGAAACACAAGAACATCAG............................................................................................................................................................................................................................................ 24 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0
...........................................................AAGAACACGAGATTGGCGGAT........................................................................................................................................................................................................................................................... 21 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
..................................................................CGAGATTGGCGGAAACACAAGAACA................................................................................................................................................................................................................................................ 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
......................TGCAGTCCCACGTAGTCTGTAATCGAACG........................................................................................................................................................................................................................................................................................ 29 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
........................................................ATTAAGAACACGAGATTGGCGGAAACA........................................................................................................................................................................................................................................................ 27 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0
............................................................AGAACACGAGATTGGCGGAA........................................................................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
..........................................................TAAGAACACGAGATTGGCGGAAACAC....................................................................................................................................................................................................................................................... 26 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0
........................................................ATTAAGAACACGAGATTGGCGGAA........................................................................................................................................................................................................................................................... 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................TATTCTAACTTGTTGGTAAAAC................................................................... 22 3 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................TTCTGGGTCTGCGATTTTT.................................................................................................................................................................................... 19 2 4 0.25 1 0 0 0 0 1 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................TACTCGTGAACTTACTCTTAT...................................................................................... 21 3 5 0.20 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................TTCTATGTAAATAAAGATTCTC...................................................................................................... 22 3 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 1 0
.................................................................................................................................................................................TTAATACTAAAATACTTCAATTAA.................................................................................................................................. 24 2 7 0.14 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................TTAATACTAAAATACTTCAATAAA.................................................................................................................................. 24 3 8 0.13 1 0 0 0 0 0 0 0 0 0 0 0 0 1
.......................................................................................................................................................................................................................................................TTATTTGTTGCGAAAACT.................................................................. 18 1 10 0.10 1 0 0 0 0 0 0 0 1 0 0 0 0 0
...................................................................................................................................................................................................................................TCCTGATCTTATTTTTATT..................................................................................... 19 2 15 0.07 1 0 0 0 1 0 0 0 0 0 0 0 0 0
..................................................................................................................AACTCTAAGCGGTTTTCGTT..................................................................................................................................................................................................... 20 3 19 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0 0
.......................................................................TTGGGGCTAACACAAGAAC................................................................................................................................................................................................................................................. 19 3 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..................................................................................ACAACAACATCAGCAAAA....................................................................................................................................................................................................................................... 18 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0 0
.................................................................ACGAGGTTGGCGGAAT.......................................................................................................................................................................................................................................................... 16 2 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

---------------------------------------------------------------------------------------------------------------------------------------------------------##################################################################################################################################################################################
GTATGTAAGTCTTGTCACATTGACGTCAGGGTGCATCAGACATTAGCTTGCATTAATAATTCTTGTGCTCTAACCGCCTTTGTGTTCTTGTAGTCGTTTTTATGTAATTTCTATTTTTGATTCGACAAAAGCAATACCCAGACCCTAAAAAACAAACATAAAACCGTAAAATTTTTGAATTATGATTTAATGAACTTAATTTGAAATAAGAAACATTTATATCTATGAGGACTTGAATTAAAATAAGAATAAACAACGATTTTGAGGTACTGCAAAAGGTCTACCGCAACGAATTTCTTAGCCGTGAGGAGCGCTTAATGAAGCGGCCTAA
*********************************************************************************************************************************************************************..........(((((.((((((..((((..((...(((...((((..........................))))..)))....))..)))).)))))).)))))..........*************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 GSM343915
embryo
.................................................................................................................................AGCAATACCCAGACCCT......................................................................................................................................................................................... 17 0 1 1.00 1 0 1 0 0 0 0
..............................................................................................................................................................................TTGAATTATGATTTAATGAAT........................................................................................................................................ 21 1 1 1.00 1 0 0 1 0 0 0
...........................AGGGTGCATCATACATTAGCT........................................................................................................................................................................................................................................................................................... 21 1 1 1.00 1 0 1 0 0 0 0
..................................................................................AGTTCTCGTAGTCGTTTTCATGT.................................................................................................................................................................................................................................. 23 3 1 1.00 1 1 0 0 0 0 0
........................................................................................................................................................................................................................TTATATCTATGAGGACTTGAAT............................................................................................. 22 0 1 1.00 1 0 0 0 0 1 0
............................................................................................................................................................................................................................................................................ACTGCAAAAGGTCTACCGCAACGA....................................... 24 0 1 1.00 1 0 0 0 1 0 0
.....................................................................................................................................................................................ATGATTTAATGAACTTAATTTGAAAT............................................................................................................................ 26 0 1 1.00 1 0 0 1 0 0 0
................................................................................................................................................................GAACCTTAAAAGTTTTGAATTAT.................................................................................................................................................... 23 3 3 0.67 2 2 0 0 0 0 0
................................................................................................................................................................AGACCTTAAAAGTTTTGAATTAT.................................................................................................................................................... 23 3 2 0.50 1 1 0 0 0 0 0
......................................................................................................................................................................................................................................................................TGAGGTACTGCGAAAGGT................................................... 18 1 2 0.50 1 0 0 0 0 0 1
...............................................................................TTGTGTTCTTGTAGCC............................................................................................................................................................................................................................................ 16 1 8 0.25 2 0 0 0 2 0 0
.........................................................................CCGCCCTTGGGTTCCTGTAG.............................................................................................................................................................................................................................................. 20 3 7 0.14 1 0 0 0 0 0 1
.....................................................................................TCTGATAGGCGTTTTTATGT.................................................................................................................................................................................................................................. 20 3 10 0.10 1 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2l:391125-391455 + dsi_15791 C--ATACATTCAGAACAGTGTAACTGCAG------TCCCACGTAGTCTGTAA--TCGAACGTAA---------TTATTAAGAACACGAGATTGGCGGAA-ACA--C----AAGA-ACATCAGCAAAAATACATTAAAGATAAAAACTAA-G------CTGTT-----TTCGTTATGGGTCTGGGA------------------------------------------------------------------TTTTTTGTTTGT--------ATTTTGGCATTTTA------------------------------------AAAACTTAATACTAAATTACTTGAATTA-----------------AACTTTATTCTTTGTAA--------------------------------------------------------------------------------------------------------------ATATAGATACT------CCT---GAACTTAATT-----------------TTATT-----------------------------------------------CTTATTTGT---------------------------------------------------------------------------------------------TGCTAAAACTCCATGACGTTTTCCAGATGGCGTTGCTTAAAGAATCGGCACTCCTCGCGAATTACTTCGCCGGATT
droSec2 scaffold_14:402196-402525 + C--ATACATTCAGAACAGTGTAACTGCAG------TCCCACGTAGTCTGTAA--TCGAACGTAA---------TTATTAAGAACACGAGATTGGCGGAA-ACA--C----AAGA-ACATCAGCAAAAATACATTAAAGATAAAAACTAA-G------CTGTT-----TTCGTTTTGGGCCTGGGA------------------------------------------------------------------TTTTTTGTTTGT--------ATTTTGCCATTTT-------------------------------------AAAACTTAATACTAAATTACTTAAATTA-----------------AACTTTATTCTTTGTAA--------------------------------------------------------------------------------------------------------------ATATAGATACT------CCT---GACCTTAATT-----------------TTATT-----------------------------------------------CTTATTTGT---------------------------------------------------------------------------------------------TGCTAAAACTCCATTACGTTTTCCAGATGGCGTTGCTTAAAGAATCGGCACTCCTCGCGAATTACTTCGCCGGATT
dm3 chr2L:418304-418630 + C--ATACATTCAGAACAGTGTAACTGCAG------TCCCACGTAGTCAGTAA--TCGAACGTAA---------TTATTAAGAACACGAGATTGGCGGAA-ACA--C----AAGA-ACATCAGCAAAAATACATTAAAGATAAAAATTAA-T------CTGTT-----TTCGTTTTGGGCCTGGGT-----------------------------------------------------------------GTTTTTTG----T--------ATTTTAGCATTTT-------------------------------------AAAATTTAATACTAAAGTACTTAAATTA-----------------AACTTTATTCTTTGTAA--------------------------------------------------------------------------------------------------------------ATATAGATACT------CCT---GAACTTAATT-----------------TTATT-----------------------------------------------TTCATTTGT---------------------------------------------------------------------------------------------TGCTAAAACTCCATGACACTTTCCAGATGGCGTTGCTTAAAGAAGCGGCACTCCTCGCGAATTATTTCGCCGGATT
droEre2 scaffold_4929:470167-470536 + C--ATACATTCAGAACAGTGTAACTGCAG------TCCCACGTAGTCTGTAA--TCGAACGTAA---------TTATTAAGAACACGAGATTGGCGGAA-ACA--C----AGAA-ACATCAGCAAAAATACATTAAAGATCCAAATTAA-G------TTGTT-----TTCGTTTTGGGACTGGGC------------------------------------------------------------------TTTTTTGTTT------------------ATTTT-------------------------------------AAAACTTATTACTAAAGAAGTTGACTCA-----------------AACTCTATTCTTTATAAT-----------------------------------------TAAAAGATGTATGCGCA-----ACAAAAATCAGACTGCACCAAAT-----------------ATACAAATTGAGATATT------CCTACTAAATTAAATG-----------------AAATC-----------------------------------------------CTTATTTGT---------------------------------------------------------------------------------------------TGCTAAAAATCCATGACATTTCCCAGGTGTCGTTGCTTGAAGAAGCGGCATTCCTCGCGAATTACTTCGCCCGATT
droYak3 2L:402202-402577 + C--ATACATTCAGAACAGTGTAACTGCAG------TCCCACGTAGTCTGTAA--TCGAACGTAA---------TTATTAAGAACACGAGATTGGCGGAA-ACA--C----AGAA-ACATCAGCAAAAATACATTAAAGATACAAATTGA-G------TTGTT-----TTTGTTTTGGGATTGGGC-----------------------------------------------------------------ATTTTTTGTTT----------ATTTCGGCCTTTT-------------------------------------A-AACTAATTACTAAAGCAGTTGATTCA-----------------AACTCTATTCCTTGTAAA------------------------------CCACAGGCT----------G-AGGCGCA-----ACATCGATCAGACTGCACCAAAG-----------------ATACAAATTGAGATATT------CTTACT-AATTAAATT-----------------AAACC-----------------------------------------------CTTA-TTGT---------------------------------------------------------------------------------------------TGCTAAAACTCCATGACACTTCCCAGGTGTCTTTGCTTGAAGAAGCGGCACTCCTCTCGAATTACTTCGCCCGATT
droEug1 scf7180000409554:1147388-1147760 + C--ATACATTCAGAACAGTGTAACTGCAT------CCCC-TGTAGTCTGTAA--AAGAACGTAACCCTAAGAATTAT-AAAAACACGAGAATGGCGAAA-ACA--C----AAAA-AC---AGCTA-AATCCATTAAAGATACAAATTAA-A------TCGTTATATTTTTATTTTGGGACAAA----TTTTAA----A-T-----------------TAG---GCTTAATCTTAAAATTGAAATT----------------------------------------------TTATAA------------------------------------------------------------------------------------AAACTATAGAAC--TT-----TATAATGCTTAGGTAAATAATGTTAAAAAATATTTTAGCAGATTAACAA-----------------AGGTTTA-------ACTTAATATAAATTAAGATACTTAATATCCA---GAA-----------------------------------------------------------------------------------AT---------------------------------------------------------------------------------------------AATTAGAACTCTATAACATTTCCAAGATGTCGTTGCTTGTAAAAGCGACAATCCTCTCGAATTACCTCGCCGGACT
droBia1 scf7180000302261:3422797-3423116 - C--ATACATTCAGAACAGTGTAACTGCAG------CCCCAAGTAGTCTGTAA--ACGAACGTAAGCCTAAGAATTATTAAGAACCCGAGAATGGCAAAA-ACA--C----AAAA-ACATCCGCAA-AATCCATTAAAGATAAAACTAAA-A------TCGTT-----GTTTTTCTGGGGCTGGGAGATTACTA----A-C--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATCG----GTTACATTAAAACAAAGTCTTATAAATATTGGTTAAGAGTTGAGTTACAATACAATTACTAGCTCTGCAATTCC---------------------------------------------------------------------------------------------TCCTAGAACTCCATGACATTTCCTAGATGTCGTTGCTTGAAGAACCGGCACTCCTCGCGAATAACCTCGCCGGACT
droTak1 scf7180000413017:97048-97206 - C--ATACATTCAGAACAGTGTAACTGCAG------CCCCACGTAGTCTGTAA--ACGAACGTAGGCCTAAGAACTATTAAGAACCCGAGAATGGCGAAA-ACA--C----AAAA-ACATCAGCAA-AATCCATTAAAGATACAAATTAA-A------TTGGT-----GTTTTTT-----CTGGGA------------------------------------------------------------------GCTTTTAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT
droEle1 scf7180000491026:418051-418393 - C--ATACATTCAGAACAGTGTAACTGCAG------CCCCACATAGTCTGTAA--ACGAGCATAAGCCTAAGAAATATTAAGAACACAAGAATGGCGAAA-AC--------AAAA-ACATCTGCAA-AATCCATTAAAGATACAAATTAA-A------TTGAGTTTTCTTCGACTTGGGGTAAAAA----GTTGTATTATTTGGGTTAGAG--AAAACAATATTATA----------------------------------------------AGATAAC-TTTCA------------------------------------CAAACTTAAGAACAAACTATTT---------------------------------------------------------------------------------------------------------------------------------------------------------TAAATATG------CTGACT-AACTTAATGTATAGAT------------------------------------------AATCATT-----------------------------------------------------------------------------------------------------------CAAA----GTCTAGAACTCTATGACATTTCCCAGATGTCGTTGCTTGAAGAAGCGGCACTCCTCGCGTATCATCTCGCCGGATT
droRho1 scf7180000779917:245506-245673 - C--ATACATTCAGAACAGTGTAACTGCAG------CCCCACGTAGTCTGTAA--ACGAACATAATCCTAA----------GAACCCAAGATTGGCGAAA-ACA--C----AAAA-ACATCTGCAA-AATCCATTAAAGATTAAAATTAA-ATGAA----GT--T--TTTTATTTTGGCT--------------------------AGTGCG-----------------------------------------------------------------------------------------GGCTTTAAGTTTTG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTTTTG
droFic1 scf7180000453904:688482-688833 + C--ATACATTCAAAACAGTGTAACTGCAG------CCCCACGTAGTCTGTAA--TCGAACGTAGGCCTAAGAATTATTAAGAACACAAGAATGGCAGAA-ACA--C----AAAA-ACATCAACAA-AATCCATTAAAGATACAAATTAA-A------TAGTT----TTTTATTTTGGGTTTGGCG-----------------------------------------------------------------GTTTTTCTTTTGGGACATTCGATTTT----------------------------------------------------------------GTTGATTCC-----------------AGCTCT-----------------------------------------------------------------------------------------------------CAACACAGATTTTAAACTTTCGGAGTACATT------CTAACT-GACCTAATTAAGAGATATACTAAAACAAA------------------AAGAT--------------------------TTCAGGTTT---------------------------------------------------------------------------------------------TGCTAAAACTCCATGACGTTTCCCAGATGTCGTTGTTTGAAGAAGCGGCACTCCTCGCGAATAACCTCTCCGGATT
droKik1 scf7180000302270:743042-743243 - C--ATACATTCAGAACAGTGTAACTGCAT-------CCCACGTAGCCTGTAA--ACGAACGTAAGCCTAAGAATGATTAAGAACACGAGATTGGCGAAA-A-ACACACACGAGA-ACAACAGCAA-AATCCATTAAAGCTAAAAATTAA-TTAAA----GT--C--TTTTATTTTGTGT------------------------------------------------------------------------------------------------------------TGAGA--A----TGGGATTAAGTTTAAGCTTTTCAAAAATTAATAATG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAAA---------------------------------------------------------------------
droAna3 scaffold_12943:4835451-4835900 - C--ATACATTCAGAACAGTGTAACTGCAT------CCCCAAGTAGTCTGTAAA-ACGAACGTAACCCTAAGGATTATAAATAACACGAGAATGGCGAAA-ACA--C----AAAA-CCAACAGCAA-GATCCATTAAAGCTAAAAATTATGA------ATGAGTT---TTTACT-TGGGT--------------------------TGTACTTTAAT---------------TGA-------GATT-----------------------------TGGACATTTTCGGAGCTA--G----GAAATGGAATTCTAGGATCTC-A---------------GTGGTTGATTAATATGTTAAGTAATACAT-------------------------ATGTTTTAAATT-ATTAG---ATCCAGAAAAT----------GATTGATACTAATAAC---------------------------------------------------------------------------------------------------------------------------------------------------------CCTCCAAACGATCGTAACAATCTATACTTTTTATCTAATTATTTAATATATTATTAAAATAATAAACTTTATAGAAAAAATATTATAGAAA----ACTTAAAAATCGATGACGTTTGCCAGATGTCGTTGCTTGAAAAAGCGGCACTCTTCGCGGATGACCTCTCCCGATT
droBip1 scf7180000395654:198854-199061 + C--ATACATTCAGAACAGTGTAACTGCAT------CCCCAAGTAGTCTGTAAA-ACGAACGTAACCCTAAGGATTATAAATAACACGAAAATGGCGAAACACA--C----AAAATCCAACAGCAA-GATCCATTAAAGCTGAAAATTCGAA------ATGAGTT---TTTAAT-TGGGT--------------------------AATGGTTTAATCGAT---ATA------------------------------------------------CGGTCATTTTC------------------------------------AGAGCTTAAAA-T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTATAACC----TGGGTT
dp5 4_group3:1215928-1216043 - C--ATACATTCAGAACAGTGTAACTGCATCCCAAACCCCCCGTAGCTTGTAAGCACGAACGTAAGCCTAAGATTTATAAAGA-----AGATTGGCGAAA-A-A--C----AAA-----------A-GATCCATTAAAGCTAAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droPer2 scaffold_1:2686633-2686846 - C--ATACATTCAGAACAGTGTAACTGCATCCCAAACCCCCCGTAGCTTGTAAGCACGAACGTAAGCCTAAGATTTATAAAGA-----AGATTGGCGAAA-A-A--C----AAA-----------A-GATTCATTAAAGCTAAAGCTATA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT-----------------TAACA-----------------------------------------------ATTA-T------------------------------------------------------------------------------------CAT----A----GACTAAAATTCAAAAACACTTGACAAGTGACGTTGCTTGAAGAAGCGGCATTCCTCGCGTATGACCTCGCCGTCTT
droWil2 scf2_1100000004954:5211978-5212118 + AGAATACATAAATAAAACTTTATTTTCCA------CATTTCTTAGTCTAAAAATA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAAATA--------------------------------------------------------------------------CAATG-----------------------------------------------------------------------------------------------------------AAAT----TTTTAAAAATCGGTTACACTACCCAAATGGCGTTGACTGAGAAAACGACACTCCTCTCGTTTTATCTCGCCAGATT
droVir3 scaffold_12963:18821326-18821399 + C---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAAATTCGGTTACATTGTCCAGGTGACACTGTTTGAAGAAGCGGCATTCCTCGCGCTTCACTTCACCCGTTT
droMoj3 scaffold_6500:24348728-24349089 - C--TTACATTC-GAACAGTGTAACTGGAT------CCCAACGTAGTGTGTAA--ACGATTATAATTTTAA-----------------AGAATGGCGTTA-A---------------CAGCTGCTACAATTCATTAAAGCTCGAAAACAA-TGCAAATCTGGT-----ATTTATTTGGAAGGGGGAAATAGGTA----A-C-----------------GAT---ATCGAATCATCGAA----------------------------------------------TGAGTG--CTAAAAAAGTGCTGCCAATTTTG---------------------------T----------------------------------------------------------------TTGCTTAACCAGAAAGT----------GAATTGGCCAAATGACAT-----------------TCTCTCAA------TCTTAAATTTATTGAACATACTTTAAACTT---------------ATAAAT------------------------------------------AATTACT-----------------------------------------------------------------------------------------------------------GAAAACCAATCTAAAAGTCCGTAACATTATCCAAGTGGCACTGTTTGAAGAGGCGGCATTCCTCACGCTTCACTTCGCCCGATT
droGri2 scaffold_15252:6737464-6737616 + A--TGTCAATAA----------------------------------------------------------------------------------------------------------------------------------------------------------------T-TTAAA--------------------------AGTATTCTATT---------------TTA-------TATTTGCTTATTTATAG-----------------------------TGTAT--C----TGGAATTAAGTCTAGGA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATTAAT---------------------------------------------------------------------------------------------TGTTAAAAGTCGGTAACATTATCTAAATGGCACTGCTTGAAGAAACGGCATTCTTCGCGCTTCACCTCGCCCGTTT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
C--ATACATTCAGAACAGTGTAACTGCAG------TCCCACGTAGTCTGTAA--TCGAACGTAA---------TTATTAAGAACACGAGATTGGCGGAA-ACA--C----AAGA-ACATCAGCAAAAATACATTAAAGATAAAAACTAA-G------CTGTT-----TTCGTTATGGGTCTGGGA------------------------------------------------------------------TTTTTTGTTTGT--------ATTTTGGCATTTTA------------------------------------AAAACTTAATACTAAATTACTTGAATTA-----------------AACTTTATTCTTTGTAA--------------------------------------------------------------------------------------------------------------ATATAGATACT------CCT---GAACTTAATT-----------------TTATT-----------------------------------------------CTTATTTGT---------------------------------------------------------------------------------------------TGCTAAAACTCCATGACGTTTTCCAGATGGCGTTGCTTAAAGAATCGGCACTCCTCGCGAATTACTTCGCCGGATTSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.............................................................TAA---------TTATTAAGAACACGAGATTGGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2517.00700000041110000000
..........................................................................TATTAAGAACACGAGATTGGCGGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2415.00500000031001000000
..........................................................................................TTGGCGGAA-ACA--C----AAGA-ACATCAGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2514.00400000022000000000
........................................................................................................................................................................................A------------------------------------------------------------------TTTTTTGTTTGT--------ATTTTGGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2113.00300000000300000000
......................................................TCGAACGTAA---------TTATTAAGAACACGAGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2713.00300000010020000000
..........................................................................TATTAAGAACACGAGATTGGCGGAA-A................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.00200000001000010000
...............................................TGTAA--TCGAACGTAA---------TTATTAAGAACA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.00200000011000000000
........TTCAGAACAGTGTAACTGCAG------TCCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.00200000020000000000
.........TCAGAACAGTGTAACTGCAG------TCCCACGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2812.00200000010100000000
...........................................................CGTAA---------TTATTAAGAACACGAGATTGGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.00200000011000000000
................................................................................GAACACGAGATTGGCGGAA-ACA--C----AA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.00202000000000000000
.........................................................................................ATTGGCGGAA-ACA--C----AAGA-ACATCAGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.00200000011000000000
....................................................................................ACGAGATTGGCGGAA-ACA--C----AAGA-AC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.00200200000000000000
.........TCAGAACAGTGTAACTGCAG------TCCCACG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.00200000011000000000
..........................................................................................TTGGCGGAA-ACA--C----AAGA-ACATCAGCAAAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................3012.00200000011000000000
......................................................................................................................TCAGCAAAAATACATTAAAGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.00200000000200000000
.................................................................................AACACGAGATTGGCGGAA-AC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00101000000000000000
........TTCAGAACAGTGTAACT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1711.00100000010000000000
..........................................................................TATTAAGAACACGAGATTGGCGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000010000000000
..........................................................................................TTGGCGGAA-ACA--C----AAGA-ACATCAGCAAAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.00100000001000000000
.............................................................................TAAGAACACGAGATTGGCGGAA-ACA--C----AA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100000000000010000
..................................................................................ACACGAGATTGGCGGAA-A................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00101000000000000000
..........................................................................TATTAAGAACACGAGATTGGCGGAA-ACA--............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100000001000000000
..............................................................................AAGAACACGAGATTGGCGGAA-ACA--C----AAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00101000000000000000
.........................................GTAGTCTGTAA--TCGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1511.00100000001000000000
............................................................................TTAAGAACACGAGATTGGCGGAA-T................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000000000001000
.................................................................................AACACGAGATTGGCGGAA-A................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100100000000000000
...........................................................................ATTAAGAACACGAGATTGGCGGAA-AC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100100000000000000
...............................................TGTAA--TCGAACGTAA---------TTATTAAGAACACG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.00100000010000000000
.................................................................................AACACGAGATTGGCGGAA-ACA--C----AAGA-..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00101000000000000000
....................................CCCACGTAGTCTGTAA--TCGAAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00101000000000000000
.............................................................................TAAGAACACGAGATTGGCGGAA-ACA--............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000000000010000
..................................................................................ACACGAGATTGGCGGAA-ACA--C----.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000000001000
...................................................A--TCGAACGTAA---------TTATTAAGAACACGAGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100000010000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCGTTGCTTAAAGAATCG.............................2011.00100000000001000000
...............................................TGTAA--TCGAACGTAA---------TTATT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000000001000000
...........................................................................................................................................................................................................................................................................................................................................................................................GTAA--------------------------------------------------------------------------------------------------------------ATATAGATACT------CCT---GAACT............................................................................................................................................................................................................................................................2311.00100000010000000000
............................G------TCCCACGTAGTCTGTAA--TCGAAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00101000000000000000
............................................................................TTAAGAACACGAGATTGGCGGAA-ACA--............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000000010000000
..............................................................................................CGGAA-ACA--C----AAGA-ACATCAGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100100000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCTTAAAGAATCGGCA..........................1811.00100000100000000000
............................................................GTAA---------TTATTAAGAACACGAGATTGGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000010000000000
...................................................................................CACGAGATTGGCGGAA-ACA--C----AAGA-..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100100000000000000
...........................................................CGTAA---------TTATTAAGAACACGAGATTGGCGGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................3011.00100000010000000000
...................................................................................CACGAGATTGGCGGAA-ACA--C----A......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000000001000
...................................................................................................................ACATCAGCAAAAATACATTAAAGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000000100000000
...................................................................................CACGAGATTGGCGGAA-ACA--............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100100000000000000
...............................................TGTAA--TCGAACGTAA---------TTATTAAGAAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000001000000000
.................................................................................AACACGAGATTGGCGGAA-ACA--............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00110000000000000000
......................................CACGTAGTCTGTAA--TCGAACGTAA---------............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000000001000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTTAAAGAATCGGCACTCC......................2111.00100000000000010000
.............................................................TAA---------TTATTAAGAACACGAGATTGGCGGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100000001000000000
.........................................................................TTATTAAGAACACGAGATTGGCGGAA-A................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000000000010000
.......................................................................................AGATTGGCGGAA-ACA--C----AAGA-ACATCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000000000001000
..........................................................................................TTGGCGGAA-ACA--C----AAGA-ACATCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00110000000000000000
..............................................................................AAGAACACGAGATTGGCGGAT-.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000000001000
.....................................................................................CGAGATTGGCGGAA-ACA--C----AAGA-ACA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000010000000000
........................TGCAG------TCCCACGTAGTCTGTAA--TCGAACG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.00100000000000001000
...........................................................................ATTAAGAACACGAGATTGGCGGAA-ACA--............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000000000010000
...............................................................................AGAACACGAGATTGGCGGAA-.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000000000001000
.............................................................................TAAGAACACGAGATTGGCGGAA-ACA--C----.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000000000010000
...........................................................................ATTAAGAACACGAGATTGGCGGAA-.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00101000000000000000
droSec2
C--ATACATTCAGAACAGTGTAACTGCAG------TCCCACGTAGTCTGTAA--TCGAACGTAA---------TTATTAAGAACACGAGATTGGCGGAA-ACA--C----AAGA-ACATCAGCAAAAATACATTAAAGATAAAAACTAA-G------CTGTT-----TTCGTTTTGGGCCTGGGA------------------------------------------------------------------TTTTTTGTTTGT--------ATTTTGCCATTTT-------------------------------------AAAACTTAATACTAAATTACTTAAATTA-----------------AACTTTATTCTTTGTAA--------------------------------------------------------------------------------------------------------------ATATAGATACT------CCT---GACCTTAATT-----------------TTATT-----------------------------------------------CTTATTTGT---------------------------------------------------------------------------------------------TGCTAAAACTCCATTACGTTTTCCAGATGGCGTTGCTTAAAGAATCGGCACTCCTCGCGAATTACTTCGCCGGATTSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.............................................................................................................................................................................TTGGGCCTGGGA------------------------------------------------------------------TTTTTTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010010
..............ACAGTGTAACTGCAG------TCCCACGTAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0011000
................AGTGTAACTGCAG------TCCCACGTAGTC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0011000
........................TGCAG------TCCCACGTAGTCTGTAA--TCGAAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0011000
..........................................................................TATTAAGAACACGAGATTGGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010010
...........................................................................ATTAAGAACACGAGATTGGCGGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100
.....................................................................................CGAGATTGGCGGAA-ACA--C----AAGA-ACATC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0011000
..............................................................................AAGAACACGAGATTGGCGGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010010
dm3
C--ATACATTCAGAACAGTGTAACTGCAG------TCCCACGTAGTCAGTAA--TCGAACGTAA---------TTATTAAGAACACGAGATTGGCGGAA-ACA--C----AAGA-ACATCAGCAAAAATACATTAAAGATAAAAATTAA-T------CTGTT-----TTCGTTTTGGGCCTGGGT-----------------------------------------------------------------GTTTTTTG----T--------ATTTTAGCATTTT-------------------------------------AAAATTTAATACTAAAGTACTTAAATTA-----------------AACTTTATTCTTTGTAA--------------------------------------------------------------------------------------------------------------ATATAGATACT------CCT---GAACTTAATT-----------------TTATT-----------------------------------------------TTCATTTGT---------------------------------------------------------------------------------------------TGCTAAAACTCCATGACACTTTCCAGATGGCGTTGCTTAAAGAAGCGGCACTCCTCGCGAATTATTTCGCCGGATTSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.............................................................................................................................................................................TTGGGCCTGGGT-----------------------------------------------------------------GTTTTTTG----T--------......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21156.005600000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000100010000000000000000100000000000000010000000001000000000000000001000000200800001141001402100000006310400
.........TCAGAACAGTGTAACTGCAG------TCCCACG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27119.00190000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000100000000000000030000101010102010000000000000000000000000000000000000000000000000000000000000000000000020000100000000000000000010200000
...........................................................................................................................................................................TTTTGGGCCTGGGT-----------------------------------------------------------------GTTTTTT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21115.00150000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000300020000000000000000000000000000000000100000000000300100
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droEre2
C--ATACATTCAGAACAGTGTAACTGCAG------TCCCACGTAGTCTGTAA--TCGAACGTAA---------TTATTAAGAACACGAGATTGGCGGAA-ACA--C----AGAA-ACATCAGCAAAAATACATTAAAGATCCAAATTAA-G------TTGTT-----TTCGTTTTGGGACTGGGC------------------------------------------------------------------TTTTTTGTTT------------------ATTTT-------------------------------------AAAACTTATTACTAAAGAAGTTGACTCA-----------------AACTCTATTCTTTATAAT-----------------------------------------TAAAAGATGTATGCGCA-----ACAAAAATCAGACTGCACCAAAT-----------------ATACAAATTGAGATATT------CCTACTAAATTAAATG-----------------AAATC-----------------------------------------------CTTATTTGT---------------------------------------------------------------------------------------------TGCTAAAAATCCATGACATTTCCCAGGTGTCGTTGCTTGAAGAAGCGGCATTCCTCGCGAATTACTTCGCCCGATTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
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..........................................................................TATTAAGAACACGAGATTGGCGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2316.0060000006
.............................................................TAA---------TTATTAAGAACACGAGATTGGCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.0021000100
............................................................................TTAAGAACACGAGATTGGCGGAA-ACA--C----A......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0011000000
..................................................................................................................................................TAA-G------TTGTT-----TTCGTTTTGGGACTGGGT------------------------------------------------------------------..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0011000000
.........TCAGAACAGTGTAACTGCAG------TCCCACG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0011000000
.................GTGTAACTGCAG------TCCCACGTAGTCTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0011000000
......................................................TCGAACGTAA---------TTATTAAGAACACGAGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0011000000
........................................................GAACGTAA---------TTATTAAGAACACGAGAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0011000000
....TACATTCAGAACAGTGTAACTGCAG------T.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0011000000
.............................................................................TAAGAACACGAGATTGGCGGAA-ACA--............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0011000000
.....................................................................................CGAGATTGGCGGAA-ACA--C----AGAA-ACA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0011000000
....................................CCCACGTAGTCTGTAA--TCGAACGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000010
..................TGTAACTGCAG------TCCCACGTAGTCTGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0011000000
..................................................................................ACACGAGATTGGCGGAA-AC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010001000
..........................................................................TATTAAGAACACGAGATTGGCGGAA-AC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0011000000
...................................................................................CACGAGATTGGCGGAA-ACA--C----AGAA-ACATC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0011000000
..............ACAGTGTAACTGCAG------TCCCACG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0011000000
.......................................................................................................................................................................TTCGTTTTGGGACTGGGC------------------------------------------------------------------TTTTTTGTT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0011000000
...................................TCCCACGTAGTCTGTAA--TCGAACG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0011000000
...............................................................A---------TTATTAAGAACACGAGATT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0011000000
droYak3
C--ATACATTCAGAACAGTGTAACTGCAG------TCCCACGTAGTCTGTAA--TCGAACGTAA---------TTATTAAGAACACGAGATTGGCGGAA-ACA--C----AGAA-ACATCAGCAAAAATACATTAAAGATACAAATTGA-G------TTGTT-----TTTGTTTTGGGATTGGGC-----------------------------------------------------------------ATTTTTTGTTT----------ATTTCGGCCTTTT-------------------------------------A-AACTAATTACTAAAGCAGTTGATTCA-----------------AACTCTATTCCTTGTAAA------------------------------CCACAGGCT----------G-AGGCGCA-----ACATCGATCAGACTGCACCAAAG-----------------ATACAAATTGAGATATT------CTTACT-AATTAAATT-----------------AAACC-----------------------------------------------CTTA-TTGT---------------------------------------------------------------------------------------------TGCTAAAACTCCATGACACTTCCCAGGTGTCTTTGCTTGAAGAAGCGGCACTCCTCTCGAATTACTTCGCCCGATTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...................................................................................CACGAGATTGGCGGAA-ACA--C----AGAA-AC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2614.00401000000003
..................................................................................ACACGAGATTGGCGGAA-ACA--C----AGAA-AC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.00200100010000
.........TCAGAACAGTGTAACTGCAG------TCCCACG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00101000000000
...................................................................................CACGAGATTGGCGGAA-ACA--C----A......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000000000
......................................................................................GAGATTGGCGGAA-ACA--C----A......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100100000000
..............................................................AA---------TTATTAAGAACACGAGATTGGCGGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000010000
...................................TCCCACGTAGTCTGTAA--TCGAACGTAA---------T...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00101000000000
..................................................AA--TCGAACGTAA---------TTATTAAGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000
................................................................................GAACACGAGATTGGCGGAA-ACA--C----AGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00101000000000
......................................................................................GAGATTGGCGGAA-ACA--C----AGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000010000
..........................................................................TATTAAGAACACGAGATTGGCGGAA-A................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00110000000000
..................................................................................ACACGAGATTGGCGGAA-ACA--C----AGAA-A.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000010000
..................................................................................ACACGAGATTGGCGGAA-AC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000010000
...................................TCCCACGTAGTCTGTAA--TCGAACG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00101000000000
droEug1
C--ATACATTCAGAACAGTGTAACTGCAT------CCCC-TGTAGTCTGTAA--AAGAACGTAACCCTAAGAATTAT-AAAAACACGAGAATGGCGAAA-ACA--C----AAAA-AC---AGCTA-AATCCATTAAAGATACAAATTAA-A------TCGTTATATTTTTATTTTGGGACAAA----TTTTAA----A-T-----------------TAG---GCTTAATCTTAAAATTGAAATT----------------------------------------------TTATAA------------------------------------------------------------------------------------AAACTATAGAAC--TT-----TATAATGCTTAGGTAAATAATGTTAAAAAATATTTTAGCAGATTAACAA-----------------AGGTTTA-------ACTTAATATAAATTAAGATACTTAATATCCA---GAA-----------------------------------------------------------------------------------AT---------------------------------------------------------------------------------------------AATTAGAACTCTATAACATTTCCAAGATGTCGTTGCTTGTAAAAGCGACAATCCTCTCGAATTACCTCGCCGGACTSizeHit CountTotal NormTotal
No Reads
droBia1
C--ATACATTCAGAACAGTGTAACTGCAG------CCCCAAGTAGTCTGTAA--ACGAACGTAAGCCTAAGAATTATTAAGAACCCGAGAATGGCAAAA-ACA--C----AAAA-ACATCCGCAA-AATCCATTAAAGATAAAACTAAA-A------TCGTT-----GTTTTTCTGGGGCTGGGAGATTACTA----A-C--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATCG----GTTACATTAAAACAAAGTCTTATAAATATTGGTTAAGAGTTGAGTTACAATACAATTACTAGCTCTGCAATTCC---------------------------------------------------------------------------------------------TCCTAGAACTCCATGACATTTCCTAGATGTCGTTGCTTGAAGAACCGGCACTCCTCGCGAATAACCTCGCCGGACTSizeHit CountTotal NormTotal
No Reads
droTak1
C--ATACATTCAGAACAGTGTAACTGCAG------CCCCACGTAGTCTGTAA--ACGAACGTAGGCCTAAGAACTATTAAGAACCCGAGAATGGCGAAA-ACA--C----AAAA-ACATCAGCAA-AATCCATTAAAGATACAAATTAA-A------TTGGT-----GTTTTTT-----CTGGGA------------------------------------------------------------------GCTTTTAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTSizeHit CountTotal NormTotal
No Reads
droEle1
C--ATACATTCAGAACAGTGTAACTGCAG------CCCCACATAGTCTGTAA--ACGAGCATAAGCCTAAGAAATATTAAGAACACAAGAATGGCGAAA-AC--------AAAA-ACATCTGCAA-AATCCATTAAAGATACAAATTAA-A------TTGAGTTTTCTTCGACTTGGGGTAAAAA----GTTGTATTATTTGGGTTAGAG--AAAACAATATTATA----------------------------------------------AGATAAC-TTTCA------------------------------------CAAACTTAAGAACAAACTATTT---------------------------------------------------------------------------------------------------------------------------------------------------------TAAATATG------CTGACT-AACTTAATGTATAGAT------------------------------------------AATCATT-----------------------------------------------------------------------------------------------------------CAAA----GTCTAGAACTCTATGACATTTCCCAGATGTCGTTGCTTGAAGAAGCGGCACTCCTCGCGTATCATCTCGCCGGATTSizeHit CountTotal NormTotal
No Reads
droRho1
C--ATACATTCAGAACAGTGTAACTGCAG------CCCCACGTAGTCTGTAA--ACGAACATAATCCTAA----------GAACCCAAGATTGGCGAAA-ACA--C----AAAA-ACATCTGCAA-AATCCATTAAAGATTAAAATTAA-ATGAA----GT--T--TTTTATTTTGGCT--------------------------AGTGCG-----------------------------------------------------------------------------------------GGCTTTAAGTTTTG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTTTTGSizeHit CountTotal NormTotal
No Reads
droFic1
C--ATACATTCAAAACAGTGTAACTGCAG------CCCCACGTAGTCTGTAA--TCGAACGTAGGCCTAAGAATTATTAAGAACACAAGAATGGCAGAA-ACA--C----AAAA-ACATCAACAA-AATCCATTAAAGATACAAATTAA-A------TAGTT----TTTTATTTTGGGTTTGGCG-----------------------------------------------------------------GTTTTTCTTTTGGGACATTCGATTTT----------------------------------------------------------------GTTGATTCC-----------------AGCTCT-----------------------------------------------------------------------------------------------------CAACACAGATTTTAAACTTTCGGAGTACATT------CTAACT-GACCTAATTAAGAGATATACTAAAACAAA------------------AAGAT--------------------------TTCAGGTTT---------------------------------------------------------------------------------------------TGCTAAAACTCCATGACGTTTCCCAGATGTCGTTGTTTGAAGAAGCGGCACTCCTCGCGAATAACCTCTCCGGATTSizeHit CountTotal NormTotal
No Reads
droKik1
C--ATACATTCAGAACAGTGTAACTGCAT-------CCCACGTAGCCTGTAA--ACGAACGTAAGCCTAAGAATGATTAAGAACACGAGATTGGCGAAA-A-ACACACACGAGA-ACAACAGCAA-AATCCATTAAAGCTAAAAATTAA-TTAAA----GT--C--TTTTATTTTGTGT------------------------------------------------------------------------------------------------------------TGAGA--A----TGGGATTAAGTTTAAGCTTTTCAAAAATTAATAATG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAAA---------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droAna3
C--ATACATTCAGAACAGTGTAACTGCAT------CCCCAAGTAGTCTGTAAA-ACGAACGTAACCCTAAGGATTATAAATAACACGAGAATGGCGAAA-ACA--C----AAAA-CCAACAGCAA-GATCCATTAAAGCTAAAAATTATGA------ATGAGTT---TTTACT-TGGGT--------------------------TGTACTTTAAT---------------TGA-------GATT-----------------------------TGGACATTTTCGGAGCTA--G----GAAATGGAATTCTAGGATCTC-A---------------GTGGTTGATTAATATGTTAAGTAATACAT-------------------------ATGTTTTAAATT-ATTAG---ATCCAGAAAAT----------GATTGATACTAATAAC---------------------------------------------------------------------------------------------------------------------------------------------------------CCTCCAAACGATCGTAACAATCTATACTTTTTATCTAATTATTTAATATATTATTAAAATAATAAACTTTATAGAAAAAATATTATAGAAA----ACTTAAAAATCGATGACGTTTGCCAGATGTCGTTGCTTGAAAAAGCGGCACTCTTCGCGGATGACCTCTCCCGATTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
....................................................................................................ACA--C----AAAA-CCAACAGCAA-GATC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001010000
..............................................CTGTAAA-ACGAACGTAACCCTAAGGATT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001010000
..............................................................................AATAACACGAGAATGGCGAAA-A................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001010000
..............................................................................AATAACACGAGAATGGCGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001010000
..............................................................................................................AAAA-CCAACAGCAA-GATCC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001010000
........................TGCAT------CCCCAAGTAGTCTGTAAA-ACG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001100000
...................................................................................................................CCAACAGCAA-GATCCATTAAAGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001010000
...............................................................................................GAAA-ACA--C----AAAA-CCAACAGCAA-GAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001001000
.........................................................................................................C----AAAA-CCAACAGCAA-GATCC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001010000
................................................GTAAA-ACGAACGTAACCCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
................................................................................................................AA-CCAACAGCAA-GATCCATT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001010000
droBip1
C--ATACATTCAGAACAGTGTAACTGCAT------CCCCAAGTAGTCTGTAAA-ACGAACGTAACCCTAAGGATTATAAATAACACGAAAATGGCGAAACACA--C----AAAATCCAACAGCAA-GATCCATTAAAGCTGAAAATTCGAA------ATGAGTT---TTTAAT-TGGGT--------------------------AATGGTTTAATCGAT---ATA------------------------------------------------CGGTCATTTTC------------------------------------AGAGCTTAAAA-T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTATAACC----TGGGTTSizeHit CountTotal NormTotal
No Reads
dp5
C--ATACATTCAGAACAGTGTAACTGCATCCCAAACCCCCCGTAGCTTGTAAGCACGAACGTAAGCCTAAGATTTATAAAGA-----AGATTGGCGAAA-A-A--C----AAA-----------A-GATCCATTAAAGCTAAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.....................AACTGCATCCCAAACCCCCC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
.......................................................................ATTTATAAAGA-----AGATTGGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010010000000
........TTCAGAACAGTGTAACTGCATCCCAAAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010100000000
.......................................................................ATTTATAAAGA-----AGATTGGCGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000001
.......ATTCAGAACAGTGTAACTGCATCC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000100000
droPer2
C--ATACATTCAGAACAGTGTAACTGCATCCCAAACCCCCCGTAGCTTGTAAGCACGAACGTAAGCCTAAGATTTATAAAGA-----AGATTGGCGAAA-A-A--C----AAA-----------A-GATTCATTAAAGCTAAAGCTATA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT-----------------TAACA-----------------------------------------------ATTA-T------------------------------------------------------------------------------------CAT----A----GACTAAAATTCAAAAACACTTGACAAGTGACGTTGCTTGAAGAAGCGGCATTCCTCGCGTATGACCTCGCCGTCTTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
......................................................................GATTTATAAAGA-----AGATTGGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2017.007400003
..............................................................................AAGA-----AGATTGGCGAAA-A-A--C----.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1914.004400000
............................................................................TAAAGA-----AGATTGGCGAAA-A-...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001010000
.......ATTCAGAACAGTGTAACTGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001001000
.............................................CTTGTAAGCACGAACGTAAGCCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
...........AGAACAGTGTAACTGCATCCC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
droWil2
AGAATACATAAATAAAACTTTATTTTCCA------CATTTCTTAGTCTAAAAATA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAAATA--------------------------------------------------------------------------CAATG-----------------------------------------------------------------------------------------------------------AAAT----TTTTAAAAATCGGTTACACTACCCAAATGGCGTTGACTGAGAAAACGACACTCCTCTCGTTTTATCTCGCCAGATTSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droVir3
C---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAAATTCGGTTACATTGTCCAGGTGACACTGTTTGAAGAAGCGGCATTCCTCGCGCTTCACTTCACCCGTTTSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCGGTTACATTGTCCAGGT................................................2111.001001000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAATTCGGTTACATTGTC.....................................................2011.001000000000000000000000000000000000000000000000000000000000000010
droMoj3
C--TTACATTC-GAACAGTGTAACTGGAT------CCCAACGTAGTGTGTAA--ACGATTATAATTTTAA-----------------AGAATGGCGTTA-A---------------CAGCTGCTACAATTCATTAAAGCTCGAAAACAA-TGCAAATCTGGT-----ATTTATTTGGAAGGGGGAAATAGGTA----A-C-----------------GAT---ATCGAATCATCGAA----------------------------------------------TGAGTG--CTAAAAAAGTGCTGCCAATTTTG---------------------------T----------------------------------------------------------------TTGCTTAACCAGAAAGT----------GAATTGGCCAAATGACAT-----------------TCTCTCAA------TCTTAAATTTATTGAACATACTTTAAACTT---------------ATAAAT------------------------------------------AATTACT-----------------------------------------------------------------------------------------------------------GAAAACCAATCTAAAAGTCCGTAACATTATCCAAGTGGCACTGTTTGAAGAGGCGGCATTCCTCACGCTTCACTTCGCCCGATTSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..........C-GAACAGTGTAACTGGAT------CCCAACG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001100000
..................................................................TTAA-----------------AGAATGGCGTTA-A---------------CAGCTGCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000001
...................GTAACTGGAT------CCCAACGTAGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000001
........................TGGAT------CCCAACGTAGTGTGTAA--A..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000001
droGri2
A--TGTCAATAA----------------------------------------------------------------------------------------------------------------------------------------------------------------T-TTAAA--------------------------AGTATTCTATT---------------TTA-------TATTTGCTTATTTATAG-----------------------------TGTAT--C----TGGAATTAAGTCTAGGA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATTAAT---------------------------------------------------------------------------------------------TGTTAAAAGTCGGTAACATTATCTAAATGGCACTGCTTGAAGAAACGGCATTCTTCGCGCTTCACCTCGCCCGTTTSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/19/2015 at 03:05 AM