ID:

dsi_15790

 Coordinate:

3l:16497921-16498070 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

ATAAACTCTTATAGTTAGTGAAAAAAAACATAATTTAAAAAGGAATATTATGGCCCAAATTTAACTAGTTATAAAAGTAATTCAAACATGCTTTCCAAAAAATTCCTTTTAAATATATTCACTACTTAAAGAAACACCTGAGTGTATCTAAATAAATCTAAACTCGTATCTCATTCCATTTGTTATCCCTCCCTTCACAGGATCTGTCCTACAAAGACAAGCACTGGCACGAGGCCTGTTTCCTGTGCTT
**************************************************.............((.((((...((((((.........)))))).............((((.(((((((((.................))))))))).))))........)))).)).................................************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 M025
embryo
 M053
female body
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR902009
testis
 SRR553487
NRT_0-2 hours eggs
 GSM343915
embryo
 SRR902008
ovaries
.....................................................................................................................................................................................................AAGGATCTGTCCTACAAAGACAAGC............................ 25 1 1 2.00 2 0 2 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................CACTGGCACGAGGCCTGTTTCCTGTG... 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................ACGAGGCCTGTTTCCTGTGCT. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................AAGGATCTGTCCTACAAAGACAAGCACT......................... 28 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................CTACAAAGACAAGCACTGGCACGA.................. 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................ACGAGGCCTGTTTCCTGTGCTT 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
........TTATAGTTAGTGACATAAA............................................................................................................................................................................................................................... 19 2 3 0.33 1 0 0 0 1 0 0 0 0 0 0
.................................TTTAAAAAGGAATATT......................................................................................................................................................................................................... 16 0 4 0.25 1 0 0 0 0 0 1 0 0 0 0
.........TATAGTTAGTGAGAAAAAAAAAAA......................................................................................................................................................................................................................... 24 3 4 0.25 1 0 0 0 0 1 0 0 0 0 0
........TTATAGTTGGAGAAAAAAAA.............................................................................................................................................................................................................................. 20 2 4 0.25 1 0 0 0 0 0 0 1 0 0 0
...........TAGTTAGTGAGAAAAA............................................................................................................................................................................................................................... 16 1 5 0.20 1 0 0 0 1 0 0 0 0 0 0
.........TATAGTTAGTGAGAAAAAAA............................................................................................................................................................................................................................. 20 2 5 0.20 1 0 0 0 0 0 0 0 1 0 0
................................................................................................................................................................................................CTTGAGAGGATCTGTCC......................................... 17 2 11 0.18 2 0 0 0 0 1 1 0 0 0 0
.................................................................................................................................................................................................TTCAGAGGATCTGTC.......................................... 15 1 7 0.14 1 0 0 0 0 1 0 0 0 0 0
.........................................................................................................................................................................................................................CAAGCACTGGGATGACGCC.............. 19 3 19 0.11 2 0 0 0 0 0 0 1 0 0 1
.............GTAAGTGAAAAAAAACATT.......................................................................................................................................................................................................................... 19 2 10 0.10 1 0 0 0 1 0 0 0 0 0 0
................................................................................................................ATATATTCCCTTCTGAAAGA...................................................................................................................... 20 3 17 0.06 1 0 0 0 0 0 0 0 0 1 0
................................................................................................................................................................................................CTTGAGAGGATCTGTC.......................................... 16 2 20 0.05 1 0 0 0 0 0 1 0 0 0 0

Anti-sense strand reads

TATTTGAGAATATCAATCACTTTTTTTTGTATTAAATTTTTCCTTATAATACCGGGTTTAAATTGATCAATATTTTCATTAAGTTTGTACGAAAGGTTTTTTAAGGAAAATTTATATAAGTGATGAATTTCTTTGTGGACTCACATAGATTTATTTAGATTTGAGCATAGAGTAAGGTAAACAATAGGGAGGGAAGTGTCCTAGACAGGATGTTTCTGTTCGTGACCGTGCTCCGGACAAAGGACACGAA
**************************************************.............((.((((...((((((.........)))))).............((((.(((((((((.................))))))))).))))........)))).)).................................************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR902009
testis
 M024
male body		 SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
.................................AAATTTTTCCTTATAATGCCAGT.................................................................................................................................................................................................. 23 3 1 1.00 1 1 0 0 0 0 0 0
................................................................................................................................................................................................GAAGTGCCGTGGACAGGATG...................................... 20 3 3 0.33 1 0 1 0 0 0 0 0
.........................................................................................................................................................TTTAGAGATGAGCATAGGGTA............................................................................ 21 3 3 0.33 1 0 0 1 0 0 0 0
...............................................................................TAAGGGTGTACGAAAGGTT........................................................................................................................................................ 19 2 4 0.25 1 1 0 0 0 0 0 0
....................................................................................................................................................................................................TGTTCTAGTCATGATGTTTCT................................. 21 3 5 0.20 1 0 0 0 1 0 0 0
............................................................................................................................................................................................................ACAGGATGTTGGTGTTC............................. 17 2 13 0.08 1 0 0 0 0 0 0 1
...........................................................................................................................................................................................................GACAGGATGTTACTATT.............................. 17 2 14 0.07 1 0 0 0 0 1 0 0
.......................................................................................................................................................................TAGATTAAGGTAAACACT................................................................. 18 2 17 0.06 1 0 0 0 0 0 1 0
...........................................................................TCATTAAGTTTTTACTGAAG........................................................................................................................................................... 20 3 20 0.05 1 0 0 0 0 0 1 0
.....................................................................................................................................................................................................................TTGTGTTCGTGACCG...................... 15 1 20 0.05 1 1 0 0 0 0 0 0
........................................................................................................................................................................AGATTAAGGTAAACACTA................................................................ 18 2 20 0.05 1 0 0 0 0 1 0 0
..................................................................................................................................................................................................AGTGCCGTGGACAGGATG...................................... 18 3 20 0.05 1 0 1 0 0 0 0 0

Generated: 04/24/2015 at 05:06 AM