ID:

dsi_15783

 Coordinate:

3r:21178509-21178851 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-96.8 -96.8 -96.7

Flybase annnotation

intergenic

No Repeatable elements found

mature
  1. 2l:2585841-2585856 +
  2. 2l:4159626-4159641 +
  3. 2l:9426537-9426552 +
  4. 2r:6433435-6433450 +
  5. 2r:6878613-6878628 +
  6. 2r:10810284-10810299 +
  7. 2r:12344333-12344348 +
  8. 2r:13046202-13046217 +
  9. 2r:20259741-20259756 +
  10. 3l:15491149-15491164 +
  11. 3l:16272389-16272404 +
  12. 3r:6605630-6605645 +
  13. 3r:11082127-11082142 +
  14. 3r:16666238-16666253 +
  15. dsi_15783  3r:21178744-21178759 +
  16. 4:28563-28578 +
  17. x:9068738-9068753 +
  18. x:10068947-10068962 +
  19. node_125350:31-46 +
  20. node_15115:456-471 +
star

Sense Strand Reads

GCGCGGTTTTTGCTGCTATCGAGTTCTTCTTTTGCTGGATTTTATATATGGTAACGATTGTTGCTGCTGCTGCTGCTGTATCATTGAAAAATGCAGCTTTAAATTTAACTTAAATGCTAAAACTTTGCAAGTGGCTTTGAAAAGCAACGCGAGAGTTAGGACAAACAAGTTGGAGGAAATTTTCCAGCTACAGCTGCTGCCTCTGCCAGCGTCGCAGTCGCTGTTCGAGATAAAGGATATGCCCGGATCTAAAAGATACAGTTTTTCCTCTTGTTTCTTTTTCCGCTGCTGCTGCTGCTACATTTGCTGCTTGGCATTTTCCGCACAGCAACAACAATCGTTGAGACAGGACCGCAAGTTTTGCTAAAATGTATCATAACACCAAATGAGCAGAGTTGGGAAGAGTGAGCGCCAAATAATGCAAATAAATGAATAAGCCCAAA
**************************************************.((((((((((((.(((((.(((.(((((((.........)))))))..............(((((((((......(((((((((((....))))...((.((((.(((........(((((((((....))))))))).......))).))))))((((((.((((.((......(((((((((((...((....((((...))))...))...)))).)))))))......)))))).)).))))...)))))))...)))))))))...)))))))).))))))))))))((.((((((.....))))))))....(((.((((........))))))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 SRR902009
testis
 SRR902008
ovaries
 SRR553487
NRT_0-2 hours eggs
 M024
male body		 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
.......................................................................................................................................................................................................................................................................................................................................................................................................AGAGTTGGGAAGAGTGAGCGCC.............................. 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................................................................................TGGCATTTTCCGCACATCGTCAA............................................................................................................. 23 3 1 1.00 1 0 1 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................................................................................TGGCATTTTCCGCACATCGTCA.............................................................................................................. 22 3 3 0.67 2 0 0 2 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................................................................................................AACCGTTGATACAGGACC.......................................................................................... 18 2 3 0.33 1 1 0 0 0 0 0 0 0 0
............................................................................................................................................................TAGGACAAGGAAGTTTGAGG........................................................................................................................................................................................................................................................................... 20 3 3 0.33 1 0 0 0 1 0 0 0 0 0
.......................................................................................................................................................................................................................................................................................................................TGGCATTTTCCGCACATCGTC............................................................................................................... 21 3 7 0.29 2 0 0 0 0 0 0 1 1 0
.................................................................................................................................................................................................................................................................................TGTCTTTTTCCGCTACTG........................................................................................................................................................ 18 2 10 0.20 2 1 0 0 0 1 0 0 0 0
.................................................................................GATTGAAAAATGCAGCT......................................................................................................................................................................................................................................................................................................................................................... 17 1 5 0.20 1 0 0 0 1 0 0 0 0 0
........................................................................................................................................................................................................................................................................................................................GGCATTTTCCGCACATCGTCA.............................................................................................................. 21 3 10 0.10 1 0 0 1 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................................................................................................GTAACAACAATCGATGAGCC................................................................................................ 20 3 16 0.06 1 0 0 0 0 1 0 0 0 0
...........................................................................................................................................................................................................................................................................................................................................................................................CACCAAAAGAGCAGA................................................. 15 1 19 0.05 1 0 0 0 0 0 0 0 0 1
....................................................ACCGATTCTTCCTGCTGCTG................................................................................................................................................................................................................................................................................................................................................................................... 20 3 20 0.05 1 0 0 0 0 0 1 0 0 0
.....................................................................................................................................................................................................................................................................TTTTTCCTCTTGTTTG...................................................................................................................................................................... 16 1 20 0.05 1 0 0 0 0 0 1 0 0 0
.............................................................................................................................................................................................................................................................................................CTGCTGCTGCTGCTAC.............................................................................................................................................. 16 0 20 0.05 1 0 0 0 0 0 1 0 0 0

Anti-sense strand reads

CGCGCCAAAAACGACGATAGCTCAAGAAGAAAACGACCTAAAATATATACCATTGCTAACAACGACGACGACGACGACATAGTAACTTTTTACGTCGAAATTTAAATTGAATTTACGATTTTGAAACGTTCACCGAAACTTTTCGTTGCGCTCTCAATCCTGTTTGTTCAACCTCCTTTAAAAGGTCGATGTCGACGACGGAGACGGTCGCAGCGTCAGCGACAAGCTCTATTTCCTATACGGGCCTAGATTTTCTATGTCAAAAAGGAGAACAAAGAAAAAGGCGACGACGACGACGATGTAAACGACGAACCGTAAAAGGCGTGTCGTTGTTGTTAGCAACTCTGTCCTGGCGTTCAAAACGATTTTACATAGTATTGTGGTTTACTCGTCTCAACCCTTCTCACTCGCGGTTTATTACGTTTATTTACTTATTCGGGTTT
**************************************************.((((((((((((.(((((.(((.(((((((.........)))))))..............(((((((((......(((((((((((....))))...((.((((.(((........(((((((((....))))))))).......))).))))))((((((.((((.((......(((((((((((...((....((((...))))...))...)))).)))))))......)))))).)).))))...)))))))...)))))))))...)))))))).))))))))))))((.((((((.....))))))))....(((.((((........))))))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 M053
female body
 GSM343915
embryo
..............................................................................................................................................................................................................................................................................................................................AGGGCGTGTCGTTGTTGTT.......................................................................................................... 19 1 1 1.00 1 1 0 0 0 0 0 0
..........AGGACGATTGCTCATGAAGAAAA.......................................................................................................................................................................................................................................................................................................................................................................................................................... 23 3 1 1.00 1 0 1 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................................................AAGGGCGTGTCGTTGTTGT........................................................................................................... 19 1 1 1.00 1 1 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................................................................AAAAAGCGTGTCGTTGTTGTTG......................................................................................................... 22 2 3 0.33 1 1 0 0 0 0 0 0
..........................................................................................................................................................................................................................................CCTATAGGGGCCTAGTTT............................................................................................................................................................................................... 18 2 4 0.25 1 0 0 1 0 0 0 0
.............................................................................................................................................................................................................................................................................................................................AAAGGCGTGTCGTTGTTGTTGT........................................................................................................ 22 2 5 0.20 1 1 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................................................ATGGGCGTGTCGTTGTTGT........................................................................................................... 19 2 11 0.18 2 1 0 0 1 0 0 0
...............................................................................................................................................................................................................................................................................................................................GGGCGTGTCGTTGTTGTT.......................................................................................................... 18 1 6 0.17 1 1 0 0 0 0 0 0
........................................................................................................................................................................................................................................................................................AAGGCGACGACGACGACG................................................................................................................................................. 18 0 7 0.14 1 0 0 0 0 0 1 0
.............................................................................................................................................................................................................................................................................................................................ATGGGCGTGTCGTTGTTGTT.......................................................................................................... 20 2 8 0.13 1 1 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................................................GCGTGTCGTTGTTGTT.......................................................................................................... 16 0 8 0.13 1 0 0 0 1 0 0 0
...................................................................................................ATTTTTATTGAATTTACGAT.................................................................................................................................................................................................................................................................................................................................... 20 2 9 0.11 1 0 0 1 0 0 0 0
......................................................................................................................................................................................................................................................TAGATTTTCTTTGTCA..................................................................................................................................................................................... 16 1 9 0.11 1 0 0 0 0 1 0 0
...............................................................................................................................................................................................................................................................................................................................TGGCGTGTCGTTGTTGTT.......................................................................................................... 18 1 14 0.07 1 1 0 0 0 0 0 0
......................................................................................TTTTTATGTGGAAATTTAAAGT............................................................................................................................................................................................................................................................................................................................................... 22 3 15 0.07 1 0 0 0 0 0 0 1
................................................................................................................................................................................................................................................................................................................................GGCGTGTCGTTGTTGTTG......................................................................................................... 18 1 18 0.06 1 0 0 0 1 0 0 0
...................................................................................................................................................................................AAAAAGTCGATATCGACG...................................................................................................................................................................................................................................................... 18 2 18 0.06 1 0 0 0 0 1 0 0
..........................................................................................................................................................................................................................................................................................................................................................................................TGGGGTTTACGCATCTCAA.............................................. 19 3 19 0.05 1 0 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3r:21178459-21178901 + dsi_15783 GCGCGGTTTTTGCTGCTAT-CGAGT------------------------------TC---TTC-TTTTGCTGGA-----------------------------------TTTT-ATATATGGTAACGA-----------------------------------------------------------------------------------TTGTTGCTGCTGCT-GCTGCTGTATCATTGAAA-----------------------------------------------------------------------------------------------------------------A--------------------AT----------------------------------GCAGCTTTAAATTTAACTTAAATGCTA-AAACT------------TTGCA----------------AGTGGCTTTG--AAAA-------------GCAACGC------------------------------------------------GAGAGTT-------AGGACAA---------AC----AAGTTGGAGGAAA-----TTTTCCAGC-TACA------------GC---TGC---------------TGCCTC--------------------------TGCCAGCGTCGCAG-----------------------------------------------------------------TCGCTGTTCGAGATAAAGGATATGCCCGGATCTAAAAGATACAGTTTTTCCTCTTGT--T-------TCTTTT-T--------CCGCTGCTGCTGCTGC------------------------------------------------TACATTTGCTG------CTTGGC-ATTTT-CC--------------------------------------------------------------------------------------------GCA---C------------------------------------------AGCAACAACAATCGTT--------------------------------------------------------------------------------------------------------------------GAGACA---G-----------GACCGCAAGTTT----T-------------------GCT------AAAATGT----------------------ATCATAACACCAAATGAGCAG-------AGTTG-------GGAAGAGTGAGCGC-CA---AATAATGC-AA------ATAAATGAATAAGCC-----CAAA
droSec2 scaffold_13:460897-461132 + GCGCGGTTTTTGCTGCTAT-CGAGT------------------------------TC---TTC-TTTTGCTGGA-----------------------------------TTTT-ATATATGGTAACGA-----------------------------------------------------------------------------------TTGTTGCTGCTGCT-GCT---GTATCATTGAAA-----------------------------------------------------------------------------------------------------------------A--------------------AT----------------------------------GCAGCTTTAAATTTAACTTAAATGCTA-AAACT------------TTGCA----------------AGTGGCTTTA--AAAA-------------GCAACGC------------------------------------------------AAGAGTT-------AGGACAA---------AC----AAGTTGGAGGAAA-----TTTTCCAGC-TACAGCTAC------AGC---TGC---------------TGCCTC--------------------------TGCCAGCGTCGCAG-----------------------------------------------------------------TCGCAG-TCGAGATAAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dm3 chr3R:21681964-21682398 + GCGCGGTTTTTGCTGCTAT-CGAGT------------------------------TC---TTC-TTTTGCTGGA-----------------------------------TTTT-ATATATGGAAACGA-----------------------------------------------------------------------------------TTGTTGCTGCT----------GTATCATTGCAG-----------------------------------------------------------------------------------------------------------------C--------------------TT----------------------------------GCAGCTTTAAATTTAACTTAAATGCTA-AAACA------------TCG-----------------------TTTTG--AAAA-------------GCAACGC------------------------------------------------GAGAGTT--------AGACAA---------AC----AAGTTGGAGGAAA-----TTTTCCAGC-TACAGCTAC------AGC---TGC---------------TGCCTC--------------------------AGCCAGCGTCGCAG-----------------------------------------------------------------TCGCTGTTCGAGATAAAGGATATGCCCGGATCTAAAAGATACAGTTTTTCCTCTTGT--T-------TCTTTT-T--------CCGCTGCTGCTGCT---------CGTGC------------------------------------TACATTTGCTG------CTTGGC-ATTTT-CC--------------------------------------------------------------------------------------------GCA---C------------------------------------------AGCAACAACAATCGTT--------------------------------------------------------------------------------------------------------------------GAGACA---G-----------GACCGCAAGTTT----T-------------------GCT------AAAATGT----------------------AACATAACACCAAATAAGCAG-------AGTTA-------GGAAGAGTGAGCGC-CA---AATAATGC-AA------ATAAATGAATAAGCC-----CAAA
droEre2 scaffold_4820:6367085-6367537 - GCGCGGTTTTTGCTGCTAT-CGAGT------------------------------TCATTTTT-TTTTGCTGGA-----------------------------------TTTT-A--TATGGTAACGA-----------------------------------------------------------------------------------TTGTTGCTGCTGCT-------GTATCATTTA---------------------------------------------------------------------------------------------------------------TAAAA--------------------AT----------------------------------GTCACTTAAGATTTGATTTAATTGCTA-TCACA------------TCGCT----------------AGTGGCTTTGGCAAAA-------------GCAGCGC------------------------------------------------GACAGTT--------AGACAA---------AC----AAGTTGGAGGAAA-----TTTTCCAGC-TTCAGCTAC------AGC---TGC---------------TGCCTC--------------------------GGCCAGCGTCGCAG-----------------------------------------------------------------TCGCTGTTCGAGATAAAGGATATGCCCGGATCTAAAAGATACAGTTTTTCCTCTTGT--T-------TCTTTT-T--------CCGCTGCTGCTGCTGC------------------------------------------------TACAATCGCTG------CTTGGC-ATTTT-CC--------------------------------------------------------------------------------------------GCA---C------------------------------------------AGCAACAACAATCGTT--------------------------------------------------------------------------------------------------------------------GAGACA---G-----------GACCTCAAGTTT----A-------------------GCT------AAAATGT----------------------AACATAACACCAAATAAGAAG-------CGAAA-------AACAAAGTGAACGC-CA---AGTAATAC-AAATACTCGTATATGAATAAGCC-----CAAA
droYak3 3R:24799593-24800067 - GCGCGGTTTTTGCTGCTAT-CGAGT------------------------------TC---TTCTTTTTGCTGGA-----------------------------------TTTT-A--TATGGTAACGA-----------------------------------------------------------------------------------TTGTTGCTGCTGCT-------GTATCATTGAAAATCA----------------------------------------------------------------------------------------------------------------------------------TT----------------------------------GTCACTTCAAATTTGATTTAATTGCCC-AAACA------------TCGCA----------------AGTGTCAATG--AAAA-------------GCAATGC------------------------------------------------GAGAGTT--------AGACAA---------AC----AAGTTGAAGGAAA-----TTTTCCAGC-TACAGCTAC------AGC---TGC---------------TGCCTC--------------------------GGCCAGCGTCGCAG-----------------------------------------------------------------TCGCTGTTCGAGATAAAGGATATGCCCGGATCTAAAAGATACAGTTTTTCCTCTTGT--T-------TCTTTT-T--------CCGCTGCTGCTGCTGC------------------------TGCCACTGCTGCTGCGGCTGCTGCTACATTCGCTG------CTTGGC-ATTTT-CC--------------------------------------------------------------------------------------------GCA---C------------------------------------------AGCAACAACAATCGTT--------------------------------------------------------------------------------------------------------------------GAGACA---G-----------GACCTCAAGTTT----A-------------------GCT------AAAATGT----------------------AACATAACACCAAATAAGAAGCGAACAGAAC--AC-----AAAAAAGTGAGCGC-CA---AATAATGC-AA------ATAAATGAATAAGCC-----CAAA
droEug1 scf7180000409682:944865-945360 - GCGCGGTTTTTGCTGCTCT-CGAGTTTTT---TT---------------------TC---TTC-TTTTTCTGGA-----------------------------------TTTC-A--CATGGTAACGA-----------------------------------------------------------------------------------TTGTTGCTGCTGCT-------GTCTAATTGAAA----------------------CCT----------------------------------------------------------TAAAAGTTCTTATTTTA-TTTTTAAA----------------------------------------------------CTA--------------------------------TAAATTA------------TCACT----------------AGTCCCTTAG--AAAA-------------GTAGC-C---AAAAA--------------------------------------ATGAGAATT--------CGACAA---------AC----AAGTTGGAGGAAA-----TTTTCCAGC-TACAGCTAC------AGCTGCTGC---------------TGCCTC--------------------------TGCCAGCGTCGCTG-----------------------------------------------------------------TCGCTGTTCGAGATAAAGGATATGCCCGGATCTAAAAGATACAGTTTTTCTTCTTGT--T-------TCTTTTTT--------CCGTTGCTGCTGCTGC------------------------TGCCTTTGC---------------T---TCTGCTGAATTTTCATGAC-ATTTT-CC--------------------------------------------------------------------------------------------ATACAGAAA-----------AC----------------AA---------AGCAACAACAATCGTT--------------------------------------------------------------------------------------------------------------------GAGACA---GG----------GACCTTAAGTTT----TTCGATATA-----------TCTAGT---TAAATGTAATAAACAAAGAAAGAAAAAGTTAAATAA-----------------------A--AT-------AAAAGTGAGCGC-CA---AATTATGG-AA------ATAAATAAATAAGCC-----GAAA
droBia1 scf7180000302113:1863689-1864132 + GCGCGGTTTTTCTAGCTCT-CGAGC------------------------------ATTTTTTT-TATAACTAGA-----------------------------------TTCC-G--CATGCTAACGA-----------------------------------------------------------------------------------TTGTTGCTTCT-------------------------------------------------------------TAA----------------------------------------------------------------------------------------------AAAAATTAT-----AATTTT-TTGAGTAA-------------------------------TAAA-CAA-----------TCCTAAAA----------------ATTGTTG--AAAA-------------GTATC-T------------------------------------------------A--------------AGAC------------C---------AGGGGAAA-----TTTTCCAGC-TAAGGCTTAGGCTACAGC---TGC---------------TGCCTC--------------------------TGCCAGCGTCGCTGCCGCAGCC----------------------------------------------GCTGTCGCTG-TCGCTGTTTGAGATAAAGGATATGCCCGGATCTAAAAGATACAGTTTTTCTTCTTGT--T-------CCTTTTTT--------CCGCTGCTGCTGCTG---------------------------------------------------------CTG------CCTGGCCATTTT-CCTTTGGC-------------------------------------------------------------------------------------------------------------------------------------------ACAACAAGCGTT--------------------------------------------------------------------------------------------------------------------GAGAAA---G-----------GACCTCAGCTT-GATGTGCTATATACTTGCCTTATAGCT------AAAATGT----------------------AATAAA--ATCGA----GCA-------AAGC--AA----ATATTAAGTGAGCGG-GA---AAGTATGCGAA------ATAACTGAATAAGCC-----GAAA
droTak1 scf7180000415658:114849-115283 + GCGCGGTTTTTCCAGCTCT-CGAGT------------------------------AAATTTTT-TTAATCTAGC-----------------------------------TTTTGA--AATGTTAACGA-----------------------------------------------------------------------------------TTGTTGCTGCTCCA-GCTGCTA------------------------------------------------------------------------A--------------------------------------------------------------------------AAATAATATTTGAAAATTTT-AAACGTA--------------------------------TAAAATA------------TCGTA----------------AATATTTTCG--AAAA-------------CTAAC--------------------------------------------------AAGA----------------------------------GTCAGGGGAAA-----ATTTCCAGC-TAAAGCTACAGCTACAGC---TGC---------------TGCCTC--------------------------TGCCAGCGTCGCTGCCGCC----------------------------------------------------G-------TCGCTGTTTGAGATAAAGGATATGCTCGGATCTAAAAGATACAGTTTTTCTTCTTGT--T-------TCTTTT-T--------CCGCTGCTACTGCTGC------------------------------------------------T------GCTG------CTTGGG-ATTTT-CC--------------------------------------------------------------------------------------------CTA---C------------------------------------------AGCAACAACAATCGTT--------------------------------------------------------------------------------------------------------------------GAGACA---G-----------GACCTTTAGTATTATTTGCTATATATTTGCTTTATGGCC------AAAATGT----------------------AATAT----CCAA-----------------------------AAAAGTGAGCGG-GA---AAGTATGCGAA------ATAACTGAATAAGCC-----GAAA
droEle1 scf7180000491261:1068543-1068950 - GCGCGGTTTTTGCTGCTCC-CGAGTTT---------------------------------TT----ATTCTGGA-----------------------------------TTTC-A---ATGGTAACGA-----------------------------------------------------------------------------------TTGTTGCTGCTGCT-------GTATTGTCAAGG----------------------ACTATT---ATATTACCCAT--------------------------AAAAAATAATTTAT-------------------------------------------------------------------------------------------------------------------------------------TCCAA----------------AGTATTTTTG--AAAA-------------ATAAT-C------------------------------------------------AAAAATT--------GGACAA---------AC----AAGTTGGAGGAAA-----TTTTCCAGC-TACAGCTAC------AGC---TGC---------------TGCCTC--------------------------TGCCAGCGTCGCTG-----------------------------------------------------------------CCGCAGTTCGAGATAAAGGATATGCCCGGATCTAAAAGATACAGTTTTTCTTCTTGT--T-------TCTTTTTTT-------CTGCTGGTGCTGCTGC------------------------------------------------T------TCTG------CTTGGC-ATTTT-GC--------------------------------------------------------------------------------------------ACA--GCAAC---------------------------------------AGCAACAACAATCGTT--------------------------------------------------------------------------------------------------------------------GAGAAA---G-----------GACCACAAGTTT----T-------------------GCTAGAT--AAAATGT----------------------AACATACAACCAA--------------------------GAAATAAGTGAGCGC-CA---AAGTATGC-AA------ATAA--------------------
droRho1 scf7180000761346:13566-13977 + GCGCGGTTTTTGCTGCTCC-CGAGTTT---------------------------------TT----TTTCTGGA-----------------------------------TTTC-A---ATGGTAACGA-----------------------------------------------------------------------------------TTGTTGCTGCTGCT-------GTTTCGTTGGGA----------------------ACTAGTCAAATATTACTTAT--------------------------CAAAA-------------------------------------------------------------------------------------------------------------------------ATA-AAATA------------TT--C----------------AGTATTTTTG--AAAA-------------GTAAC-CAAC----------------------------------------------AAAATT--------GGACAA---------AC----AAGTTGGCAGAAA-----GTTTCCAGC-TACA------------GC---TGC---------------TGTTTC--------------------------TGCCAGCGTCGCTG-----------------------------------------------------------------CCGCTGTTCGAGATAAAGGATATGCCCGGATCTAAAAGATACAGTTTTTCTTCTTGT--T-------CCTTTTTT--------GCGCTGCTGCGGCTGC------------------------------------------------T------TCTG------CCTGGC-ATTTT-CC--------------------------------------------------------------------------------------------ACA--GCAAT---A------GC---------------------------AACAACAACAATCGTT--------------------------------------------------------------------------------------------------------------------GAGACA---G-----------GACCTTAA----------------------------GCT------AAAATGT----------------------AACTTACAACCAA-T-------------------------AAAGAAGTGAGCGC-CA---AAGTATGC-AA------ATAAATGAATAAGCC-----GAAA
droFic1 scf7180000454055:1583337-1583777 + GCGCGGTTTTTGCTGCTCC-CGAGTTT---------------------------------------TTTCTGGA-----------------------------------TGT--A--AATGGTAACGA-----------------------------------------------------------------------------------TTGTTGCTGCTGCT-------GCTTTATTGAAA----------------------ACTAA-------------------------------------------------------------------------------------------------------------AATTAATATT----AATT---------------------------------TTAAAAGTTT-AAACAACCCAGAGCTTGTC-AA----------------AGTTTTTTCG--AAAA-------------GTATA-C------------------------------------------------AAAAATC--------GGACAA---------AC----AAGTTGGAGGAAA-----TTTTCCAGC-TACA------------GC---TGC---------------TGCCTC--------------------------TGCCAGCGTCGCTG-----------------------------------------------------------------CCACTGTTCGAGATAAAGGATATGCCCGGATCTAAAAGATACAGTTTTTCTTCTTGT--T-------CCTTTT-T--------CCGCTGCCGCTGCTGCTGCTGCTCGTGC------------------------------------T---TCTGCTG------CCTGGC-ATTTT-CC--------------------------------------------------------------------------------------------ACA--GC------------------------------------------AGCAACAACAATCGTT--------------------------------------------------------------------------------------------------------------------GAGACA---G-----------GACCTTAGGTAT----T-------------------GCTATGTCAAAAATGT----------------------AATATACAACCGA--------------------------AAATTAAGTGAGCGC-CA---AAGTATGC-AA------ATAAATGAATAAGCC-----GAAA
droKik1 scf7180000302475:2818732-2819221 - GCGCGGTTTTGGCTGCTCCCCGAGTTT---------------------------------TT--TTGTGCCTGA-----------------------------------TTTT-T--TATGGTAGCGA-----------------------------------------------------------------------------------TTGTTGCTGCT-CTGACAGCT------------------------------------------------------------------------------------------------------------------------CAAGAAAATTGCCACGCAGAAAAAAAAG-------AA-----AATATTGCCGAATAAAAATTG--------------------------------------------TCACAAAAGTTGTT-------GG-----------------------------------CCAAAAAGAAA------------AAAAGATTTGTGTTAGCCGAAA-----AGGC--------AGCCAA---------AC----AAGTTGGAGGAAA-----TTTTCCAGC-TACA------------GC---TGC---------------TGCCGC--------------------------AGCCAACGTCGCTGTCGCA----------------------------------------------GC-GCTGCCGCTGT-----GTCCGAGATAAAGGATATGCCCGGATCTAAAAGATACAGTTTTTCTT-------T-------GCTTTT-T---------CG-----------------------------CAGG------------------------------------CTG------CTTGGC-ATTTT-CC--------------------------------------------------------------------------------------------ACA--GC------------------------------------------GGCAACAACAATCGCCAACCAAAGAAG-AATTTCGTCTGCCAGCCGAAAAAAAAGAA---GAAA-T------------AAT---------------------------------------------------AA---------------------------------------------------------G------AAAATGA----------------------AACATAAAGCCAG-TGAGT------------GAGAGAGAGAGAGAAGAGAACGC-CA----AGAATGC-AAAA----ATAAATGAATAAGACCCCCAGAAA
droAna3 scaffold_13340:11464459-11464998 - GCGCGGTTTCTGCTGATAC-CGAATC------------------------------------------TCTAGA-----------------------------------ATT-----AATGGTAACGA-----------------------------------------------------------------------------------TTGTTGCTGCTGCT-GCTGTTG----A-----------------------------------------------------------------------TTT-------------TTTGAGAGT---------ATTTTTTAAAAGAAAAATTAGCTTACAATAAAAAAAA-------TA-----AATA------AATAAATA--G--------------------------------------------CC----------------------------------------------------------ATAGAGAAATGATCGAGCGGCAAAAGGTATATATTTTTCGAAAGG---A--AAACCCCAAG---GA---------AC----AAGTTGTGGGAAA-----TTTTCCAGC-TACGGCTAC------AGC---TGC---TGCTGTCGGTGCTGCCTC--------------------------AGTCAACGGCTCTGCAGCA----------------------------------------------GC-GCTGTCGCTGT-----GTCCGAGATAAAGGATATGCCCGGATCTAAAAGATACAGTTTTTCTTCTTTT--T-------CCTTTTT----------TGCTGCTGC------------TTGAGTTGTGCAGG------------------------------------CTG------CTTGGT-ATTTT-TCTTTATCCCA-------------------------------------------------------ACAGTAACAGCTAAGAAAAAAAA-----------AAAA---A------ACAAAAACAACTACG---------GCAACAGCAAGAACAATCGGT---------------------------------------------------------ATTTTAACGTGAAATTAACGAAGGAATT-------------------------------TAGCCA-----------------------------------------------GGTAGCA------AAAATGT----------------------A------------------------------------------------AGCAC-CGAGGGAGTATGC-AA------ATAAATTAATAAGCC-----AAAG
droBip1 scf7180000396691:373322-373837 - GCGCGGTTTCTGCTGATAC-CGAATC------------------------------------------TCCAGA-----------------------------------ATT-----AATGGTAACGA-----------------------------------------------------------------------------------TTGTTGCTGCTGCT-GCTGTTG----A-----------------------------------------------------------------------TTT-------------TT--------------------TTT--AAGAAAAATTAGCTTACAAAAA----AA-----TTAA-----AATA------AATAAATA--G--------------------------------------------TCACA---------------------------------------------------------------ATGATCGAGCGGCATTAAGTATATATTTTTTGAAAGT---A--AAACCCCAAG---GA---------AC----AAGTTGTGGGAAA-----TTTTCCAGC-TACGGCTAC------AGC---TGC---TGCTGTCGCTGCTGCCTC--------------------------TGTCAGCGCCTCTGCGGCA----------------------------------------------GC-GCTGTCGCTGT-----GTCCGAGATAAAGGATATGCCCGGATCTAAAAGATACAGTTTTTCTTCTTTT--T-------CCTTTTT----------TGCTTCTTC------------TTGAGTTGTGCAGG------------------------------------CTG------CTTGGT-ATTTT-TTTTT-----------------------------------------------------TAATCCAAACAGCAACAG------------------------AAAT---A------ACAAAAACAAGAACG---------GCAACA------GCA------------------A----------------------ACAGCA---AGAA-CAATCGGTATTTTAACGTGAAACTAACGAAGGAATT-------------------------------TAGCCA-----------------------------------------------GCTAGCA------AA----------------------------------------------------------------------AATGTGAGCAC-CGAGCGAGTATGC-AA------ATAAATTAATAAGCC-----AAAG
dp5 2:23406550-23407102 - GCGCGGTTTTTGCTGCTCT-CCAGCTT-----------------------------------------GGGGGGATTTGTGGTAAAACTTCTATCTT----------------------------CTG-----------------------------------------------------------------------------------TTGTTGCTG------------------------------------------------------------------GGTCCTCGTCCTCCTGTTGTTAAT--CACAGC------------------------------------------------------------------------AGAAA-----------------------------------------------------------------------------------------TTGTTG--AAACGAATTAGCGAGAAAGC----ACCAAAAATAAA------------A---------------CCGAGT-----AGGAAG--CCAAGGAAAA---------GC----A-----AAGGAAA-----TTTTCCAGC-TACAGCTAC------AGC---TGCTC-TGCTGCTACTGCTGCCGC--------------------------TGCGAGCGTCGCTGC----------GTCAACAGCGCTGCTGCTGCCGCGGCTGCTGCTGCT-GCTGCGGGTGCTGCTGT-----GTCCGAGATAAAGGATATGCCCGGATCTAAAAGATACAGTTTTTCTTCTTCTGTTTCAATTTTTTTTT-TTCGTGTTT--TTTGCTCC------------TTGTCTTGTGCAGG------------------------------------CTG------CTTGGC-TTTCTGGCTGCG---------------------------------------------------------------------------GAAAAGCAGAGCGGAA---C---AGC---------AA------CAACA---------GCAACA------GAAAT---------------A-----------------------------------------------------------CTAAAGCAATAATTTGTTTGGAGAATTCGTT--------------CCGACG-----------------------------------------------GCTGGCC-----AAAAATGT----------------------GGCATACAACT--------------------------------GAAGTGTGGCCCGAAGAAACTATGC-AA------ATAAATTAATATGCC-----GAAA
droPer2 scaffold_3:6178270-6178815 - GCGCGGTTCTTGCTCCTCT-CCAGTTT-----------------------------------------GGGGGA-TTTGTGGTAAAACTTCTATCTT----------------------------CTG-----------------------------------------------------------------------------------TTGTTGCTG------------------------------------------------------------------GGTCCTCGTCCTCCTGTTGTTAAT--CACAGC------------------------------------------------------------------------AGAAA-----------------------------------------------------------------------------------------TTGTTG--AAACGAATTAGCGAGAAAGC----ACCAAAAATAAA------------A---------------CCGAGG-----AGGAAG--CCAAGGAAAA---------GC----A-----AAGGAAA-----TTTTCCAGC-TACAGCTAC------AGC---TGCTC-TGCTGCTACTGCTGCCGC--------------------------TGCGAGCGTCGCTGC----------GTCAACAGCGCTGCTGCTGCCG------CTGCTGCT-GCTGCGGGTGCTGCTGT-----GTCCGAGATAAAGGATATGCCCGGATCTAAAAGATACAGTTTTTCTTCTTCTGTTTCAATTTTTTTTT-TTCGTGTTT--TTTGCTCC------------TTGTCTTGTGCAGG------------------------------------CTG------CTTGGC-TTTCTTGCTGCG---------------------------------------------------------------------------GAAAAGCAGAGCGGAA---C---AGC---------AA------CAACA---------GCAACA------GAAAT---------------A-----------------------------------------------------------CTAAAGCAATAATTTGTTTGGAGAATTCGTT--------------CCGACG-----------------------------------------------GCTGGCC-----AAAAATGT----------------------GGCATACAACT--------------------------------GAAGTGTGGCCCGAAGAAACTATGC-AA------ATAAATTAATATGCC-----GAAA
droWil2 scf2_1100000004943:14359177-14359742 - GCGCGGTTTTGCCTGCTTC-TG-CT------------------------------GC---TTC-TCTTGAACGG-----------------------------------TTTT-ATTTATGGTAACTAAAAAAAAAATAAAAAAAATTGAAAAATTAAACGTAAAAACCCAAACGAAATTCAATTAAATGTAATCACAACAAATTAATAAATTATTCAAGTTTG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCTAAAAATTGTT-------TGTCACCTTTC---------------TAAATC----ACAAAAAATAA-----------------------------------------GGAAG--CAA-AAAAAAGAAAGAAAAACGAAACCGTTGAAGGAAA-----TTTTCCAGTTTACAGCTGC------TGC---------------------TGCTGC--------------------------TGCTGGTGTTGCTGCTGGC------GTC---------------------------------AACAGC-GCTGCTTGTAT-----GTCCGAGATAAAGGATATGCCCGGATCTAAAAGATACAGTTTTTCCTTTTTG--C-------CATTCATT--------CTCCTGCT---------------CGCCTCTTCC-------TGTC---------------------------CCTG------CTTGTG-CTTCT-CCTTCACCACCTTAGATGGCACTCCAGTTTACCTCAATAAACCAATTCACTTATTTTCTATCTCGGACAGCAGCAGC----------A-----ACAA---C---ATC---------AA------CAACA---------GCAACA------ACAAC---------------A-----------------------------------------------------------ATAA----------------------------------------------------------------------------------------------------------------------------------------------TAAC-AAATAA---------------------AGGTAGAAATGTGCTT-C----AACTATGC-AA------ATAAATTAATAAGCC-----AAAA
droVir3 scaffold_13047:16101865-16102392 - TTGCGGTTTGTTCTTAATT-TTCATTTATGATAT-------------------------------GCTGCT--------------------------------------TTTT-T-----------AA-----------------------------------------------------------------------------------TTGTTCTTGT-----CG--TCG----ATTGTTGATTGTTGTTCTT------------------------------------------GATGTTGTTA--------------------------------------------------------------------------------------------------------------------------CTA---------AA-ATG-----------TTCTAAAAATGAG-CG-TTGA---ATTTTCG--CAAA-------------GCAGCGT-------------------------------------------------------------------AA---------------------ACGAAAAT----TTTTCCAGC-TACAGCTG---------------CTGGCGGTGCCACGGCCGCAGCTGCTAACGCTGCTGCTGCT-CTGCTCTGCTAACGCCGCTGCTGCTGCTGCTG------------------------------CTCCTGACTGC-GCTGCTGCGTT-----GTCCGAGATAAAGGATATGCCCGGATCTAAAAGATACAGTTTTTTTTTTTA-----------------------------------------------------CTTGTGCAGGCAGC--------------------------------TTG------CTTGGC-TTTTT-GCTTTGACGCTGC-GTTTG------------------TAAGC----------------GAACTTAAGCAAC-------------------------A--ACAAC---A------ACAACAACAACAACG---------GCAAAA------GAA------------------A--------------------------------------------------------ATTTA-------------------TACTGTG---TGTGCGTGCGGCTTG-AGAGCAG-AATGA-TGTGAGTGACAA------------------------GTTGGCG------AAAAAAA---------------AAAA-----------ACCGA-----------AAACGAA--AC-------AAAAATGTGCGC------AACTATGC-AA------ATAAATTAATAAGCC-----AAAG
droMoj3 scaffold_6540:14905473-14906043 - GCGCGACTGGTGCTCAACT-TGTATTT---------------------------------ATC-TGCTGCTGC------------------------------------TTT--------------AA-----------------------------------------------------------------------------------TTGTTGTTGTTGCT-GCTGTCA----ATTGTTGATTGTGGTTCTTGTTGTTGTTG--------------------CGCCATTGGACTCTATTTGTCAA-------------------------------------------------------------------------------------------------------------------ATTTG------------------------------TCA-AAAAACCCG-CCTTTCA---TTTTTGG--CGTA-------------GCAGCGT-------------------------------------------------------------------AA---------------------ATGAAAATT---TTTTTCAGC-TACAGCTG---------------CTGGCGGTGCCACGGCCGCAGCTGCTAGTGCTGCTG------CTACTCTGCCAACGTCGCAGCCGCTGCT---TTC---------------------------------GGCTGC-GCTGCTGCGCT-----GTCCGAGATAAAGGATATGCCCGGATCTAAAAGATACAGTTTTTTTTTTT-----------------------------CGCC-------------------AACTTGTGCAGGCTGC--------------------------------CTG------CTTGGC-TTTTT-GCTGTGTCGCTTC-GTTCC------------------TAAGC----------------GAACTTAAGCAGTAACAG------------------------CAAC---AACAACCACAAC------AACAATCACA---GCAAC------AACATT----------------A----------------------ACAGCAGCAGCAAAG------------A-GAGAAAATTA-------------------CAATGTG---TGTGCGTGCGGTTTGGATAGCAG-AGTAAAAATGAGTGACAA------------------------GTTGGC-----------------------------AAAA-----------ACCAA-----------AAATG-A--AC-------AAAAGTGTGCGC------AACTATGC-AA------ATAAATTAATAAGCC-----AAAC
droGri2 scaffold_15116:946858-947431 - CCGCGGTTTGTTCTTAACT-TTTATTTATGGTATGCTGCTTTTGCTGCTGCTGCTG--------------------------------------CTACTGCTGCTGCTGTTTT-T-----------TT-----------------------------------------------------------------------------------TTCTTCTTGTTTGT-CG--TCG----ATTGTTGATTGT----------------------------------TAT--------------------------CAATT-----------------------------------CAAAAG--------------------AA----------------------------------TTCACT-------------------------------------------AAATGCGAG-CG-TTAA---ATTTT-------------------------------------------------------------------------------------------CGCCTA---------GC----AGCGTAGTCAAAATTTTTTTTTCCAGC-TACAGCTG---------------CTGGCGGTGCCACAGCCGCAGCTGCTCATGCTGCTTCTGCTGCTGCTCCGCTTACGTCGCAGCTGCTGCTGCTGCC---------------------------------GACTGC-GCTGCTGCGTT-----GTCCGAGATAAAGGATATGCCCAGATCTAAAAGATACAGTTTTTTTTT-------------------------------------------------------ACTTCTGCAGGCTGC--------------------------------TTG------CTTGGC-TTTTT-GCTGTGTCGCTCC-ATTCG------------------CAAGC----------------GAATTTAGGCAAC----------------G-----ACAA---G------A------ACAAC------AACAGCCAGAAGAACAACA------AA-------------------A----------------------ACAGCA---GAAAAC------------AACGTAAAATTA-------------------GAATGCGTGGTGTGCGTGCGGGTTG-AGAGTAA-AGTGA-AGTGAGTGACAA------------------------GTTGGC-----------------------------AAAA-----------ACTGA-----------AAATGTA--AC-------AAAAATGTGCGC------AACTATAC-AA---CAAGTAAATTAATAAGCC-----AAAG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
GCGCGGTTTTTGCTGCTAT-CGAGT------------------------------TC---TTC-TTTTGCTGGA-----------------------------------TTTT-ATATATGGTAACGA-----------------------------------------------------------------------------------TTGTTGCTGCTGCT-GCTGCTGTATCATTGAAA-----------------------------------------------------------------------------------------------------------------A--------------------AT----------------------------------GCAGCTTTAAATTTAACTTAAATGCTA-AAACT------------TTGCA----------------AGTGGCTTTG--AAAA-------------GCAACGC------------------------------------------------GAGAGTT-------AGGACAA---------AC----AAGTTGGAGGAAA-----TTTTCCAGC-TACA------------GC---TGC---------------TGCCTC--------------------------TGCCAGCGTCGCAG-----------------------------------------------------------------TCGCTGTTCGAGATAAAGGATATGCCCGGATCTAAAAGATACAGTTTTTCCTCTTGT--T-------TCTTTT-T--------CCGCTGCTGCTGCTGC------------------------------------------------TACATTTGCTG------CTTGGC-ATTTT-CC--------------------------------------------------------------------------------------------GCA---C------------------------------------------AGCAACAACAATCGTT--------------------------------------------------------------------------------------------------------------------GAGACA---G-----------GACCGCAAGTTT----T-------------------GCT------AAAATGT----------------------ATCATAACACCAAATGAGCAG-------AGTTG-------GGAAGAGTGAGCGC-CA---AATAATGC-AA------ATAAATGAATAAGCC-----CAAASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AG-------AGTTG-------GGAAGAGTGAGCGC-C.............................................2211.00110000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTCCTCTTGT--T-------TG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................16200.05100000000001000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCTGCTGCTGC------------------------------------------------TAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................16200.05100000000001000000
droSec2
GCGCGGTTTTTGCTGCTAT-CGAGT------------------------------TC---TTC-TTTTGCTGGA-----------------------------------TTTT-ATATATGGTAACGA-----------------------------------------------------------------------------------TTGTTGCTGCTGCT-GCT---GTATCATTGAAA-----------------------------------------------------------------------------------------------------------------A--------------------AT----------------------------------GCAGCTTTAAATTTAACTTAAATGCTA-AAACT------------TTGCA----------------AGTGGCTTTA--AAAA-------------GCAACGC------------------------------------------------AAGAGTT-------AGGACAA---------AC----AAGTTGGAGGAAA-----TTTTCCAGC-TACAGCTAC------AGC---TGC---------------TGCCTC--------------------------TGCCAGCGTCGCAG-----------------------------------------------------------------TCGCAG-TCGAGATAAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
dm3
GCGCGGTTTTTGCTGCTAT-CGAGT------------------------------TC---TTC-TTTTGCTGGA-----------------------------------TTTT-ATATATGGAAACGA-----------------------------------------------------------------------------------TTGTTGCTGCT----------GTATCATTGCAG-----------------------------------------------------------------------------------------------------------------C--------------------TT----------------------------------GCAGCTTTAAATTTAACTTAAATGCTA-AAACA------------TCG-----------------------TTTTG--AAAA-------------GCAACGC------------------------------------------------GAGAGTT--------AGACAA---------AC----AAGTTGGAGGAAA-----TTTTCCAGC-TACAGCTAC------AGC---TGC---------------TGCCTC--------------------------AGCCAGCGTCGCAG-----------------------------------------------------------------TCGCTGTTCGAGATAAAGGATATGCCCGGATCTAAAAGATACAGTTTTTCCTCTTGT--T-------TCTTTT-T--------CCGCTGCTGCTGCT---------CGTGC------------------------------------TACATTTGCTG------CTTGGC-ATTTT-CC--------------------------------------------------------------------------------------------GCA---C------------------------------------------AGCAACAACAATCGTT--------------------------------------------------------------------------------------------------------------------GAGACA---G-----------GACCGCAAGTTT----T-------------------GCT------AAAATGT----------------------AACATAACACCAAATAAGCAG-------AGTTA-------GGAAGAGTGAGCGC-CA---AATAATGC-AA------ATAAATGAATAAGCC-----CAAASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAG-----------------------------------------------------------------TCGCTGTTCGAGATA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTTT-T--------CCGCTGCTGCTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGGAAA-----TTTTCCAGC-TCG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAGCGTCGCAG-----------------------------------------------------------------TCGCTGTTCGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGCAG-----------------------------------------------------------------TCGCTGTTCGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1820.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGC------------------------------------------------GAGAGTT--------AGACAA---------AC----TTC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2230.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA---------AC----AAGTTGGAGGAAA-----A.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1840.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACAGTTTTTCCTCTTTG--.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1960.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
GCGCGGTTTTTGCTGCTAT-CGAGT------------------------------TCATTTTT-TTTTGCTGGA-----------------------------------TTTT-A--TATGGTAACGA-----------------------------------------------------------------------------------TTGTTGCTGCTGCT-------GTATCATTTA---------------------------------------------------------------------------------------------------------------TAAAA--------------------AT----------------------------------GTCACTTAAGATTTGATTTAATTGCTA-TCACA------------TCGCT----------------AGTGGCTTTGGCAAAA-------------GCAGCGC------------------------------------------------GACAGTT--------AGACAA---------AC----AAGTTGGAGGAAA-----TTTTCCAGC-TTCAGCTAC------AGC---TGC---------------TGCCTC--------------------------GGCCAGCGTCGCAG-----------------------------------------------------------------TCGCTGTTCGAGATAAAGGATATGCCCGGATCTAAAAGATACAGTTTTTCCTCTTGT--T-------TCTTTT-T--------CCGCTGCTGCTGCTGC------------------------------------------------TACAATCGCTG------CTTGGC-ATTTT-CC--------------------------------------------------------------------------------------------GCA---C------------------------------------------AGCAACAACAATCGTT--------------------------------------------------------------------------------------------------------------------GAGACA---G-----------GACCTCAAGTTT----A-------------------GCT------AAAATGT----------------------AACATAACACCAAATAAGAAG-------CGAAA-------AACAAAGTGAACGC-CA---AGTAATAC-AAATACTCGTATATGAATAAGCC-----CAAASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA---C------------------------------------------AGCAACAACAATCGTT--------------------------------------------------------------------------------------------------------------------GAG.................................................................................................................................................................................................2212.0020000020
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA---C------------------------------------------AGCAACAACAATCGTT--------------------------------------------------------------------------------------------------------------------GA..................................................................................................................................................................................................2111.0010000010
.........................................................................................................................GTAACGA-----------------------------------------------------------------------------------TTGTTGCTGCTGCT-------..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000010
droYak3
GCGCGGTTTTTGCTGCTAT-CGAGT------------------------------TC---TTCTTTTTGCTGGA-----------------------------------TTTT-A--TATGGTAACGA-----------------------------------------------------------------------------------TTGTTGCTGCTGCT-------GTATCATTGAAAATCA----------------------------------------------------------------------------------------------------------------------------------TT----------------------------------GTCACTTCAAATTTGATTTAATTGCCC-AAACA------------TCGCA----------------AGTGTCAATG--AAAA-------------GCAATGC------------------------------------------------GAGAGTT--------AGACAA---------AC----AAGTTGAAGGAAA-----TTTTCCAGC-TACAGCTAC------AGC---TGC---------------TGCCTC--------------------------GGCCAGCGTCGCAG-----------------------------------------------------------------TCGCTGTTCGAGATAAAGGATATGCCCGGATCTAAAAGATACAGTTTTTCCTCTTGT--T-------TCTTTT-T--------CCGCTGCTGCTGCTGC------------------------TGCCACTGCTGCTGCGGCTGCTGCTACATTCGCTG------CTTGGC-ATTTT-CC--------------------------------------------------------------------------------------------GCA---C------------------------------------------AGCAACAACAATCGTT--------------------------------------------------------------------------------------------------------------------GAGACA---G-----------GACCTCAAGTTT----A-------------------GCT------AAAATGT----------------------AACATAACACCAAATAAGAAGCGAACAGAAC--AC-----AAAAAAGTGAGCGC-CA---AATAATGC-AA------ATAAATGAATAAGCC-----CAAASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEug1
GCGCGGTTTTTGCTGCTCT-CGAGTTTTT---TT---------------------TC---TTC-TTTTTCTGGA-----------------------------------TTTC-A--CATGGTAACGA-----------------------------------------------------------------------------------TTGTTGCTGCTGCT-------GTCTAATTGAAA----------------------CCT----------------------------------------------------------TAAAAGTTCTTATTTTA-TTTTTAAA----------------------------------------------------CTA--------------------------------TAAATTA------------TCACT----------------AGTCCCTTAG--AAAA-------------GTAGC-C---AAAAA--------------------------------------ATGAGAATT--------CGACAA---------AC----AAGTTGGAGGAAA-----TTTTCCAGC-TACAGCTAC------AGCTGCTGC---------------TGCCTC--------------------------TGCCAGCGTCGCTG-----------------------------------------------------------------TCGCTGTTCGAGATAAAGGATATGCCCGGATCTAAAAGATACAGTTTTTCTTCTTGT--T-------TCTTTTTT--------CCGTTGCTGCTGCTGC------------------------TGCCTTTGC---------------T---TCTGCTGAATTTTCATGAC-ATTTT-CC--------------------------------------------------------------------------------------------ATACAGAAA-----------AC----------------AA---------AGCAACAACAATCGTT--------------------------------------------------------------------------------------------------------------------GAGACA---GG----------GACCTTAAGTTT----TTCGATATA-----------TCTAGT---TAAATGTAATAAACAAAGAAAGAAAAAGTTAAATAA-----------------------A--AT-------AAAAGTGAGCGC-CA---AATTATGG-AA------ATAAATAAATAAGCC-----GAAASizeHit CountTotal NormTotal
No Reads
droBia1
GCGCGGTTTTTCTAGCTCT-CGAGC------------------------------ATTTTTTT-TATAACTAGA-----------------------------------TTCC-G--CATGCTAACGA-----------------------------------------------------------------------------------TTGTTGCTTCT-------------------------------------------------------------TAA----------------------------------------------------------------------------------------------AAAAATTAT-----AATTTT-TTGAGTAA-------------------------------TAAA-CAA-----------TCCTAAAA----------------ATTGTTG--AAAA-------------GTATC-T------------------------------------------------A--------------AGAC------------C---------AGGGGAAA-----TTTTCCAGC-TAAGGCTTAGGCTACAGC---TGC---------------TGCCTC--------------------------TGCCAGCGTCGCTGCCGCAGCC----------------------------------------------GCTGTCGCTG-TCGCTGTTTGAGATAAAGGATATGCCCGGATCTAAAAGATACAGTTTTTCTTCTTGT--T-------CCTTTTTT--------CCGCTGCTGCTGCTG---------------------------------------------------------CTG------CCTGGCCATTTT-CCTTTGGC-------------------------------------------------------------------------------------------------------------------------------------------ACAACAAGCGTT--------------------------------------------------------------------------------------------------------------------GAGAAA---G-----------GACCTCAGCTT-GATGTGCTATATACTTGCCTTATAGCT------AAAATGT----------------------AATAAA--ATCGA----GCA-------AAGC--AA----ATATTAAGTGAGCGG-GA---AAGTATGCGAA------ATAACTGAATAAGCC-----GAAASizeHit CountTotal NormTotal
No Reads
droTak1
GCGCGGTTTTTCCAGCTCT-CGAGT------------------------------AAATTTTT-TTAATCTAGC-----------------------------------TTTTGA--AATGTTAACGA-----------------------------------------------------------------------------------TTGTTGCTGCTCCA-GCTGCTA------------------------------------------------------------------------A--------------------------------------------------------------------------AAATAATATTTGAAAATTTT-AAACGTA--------------------------------TAAAATA------------TCGTA----------------AATATTTTCG--AAAA-------------CTAAC--------------------------------------------------AAGA----------------------------------GTCAGGGGAAA-----ATTTCCAGC-TAAAGCTACAGCTACAGC---TGC---------------TGCCTC--------------------------TGCCAGCGTCGCTGCCGCC----------------------------------------------------G-------TCGCTGTTTGAGATAAAGGATATGCTCGGATCTAAAAGATACAGTTTTTCTTCTTGT--T-------TCTTTT-T--------CCGCTGCTACTGCTGC------------------------------------------------T------GCTG------CTTGGG-ATTTT-CC--------------------------------------------------------------------------------------------CTA---C------------------------------------------AGCAACAACAATCGTT--------------------------------------------------------------------------------------------------------------------GAGACA---G-----------GACCTTTAGTATTATTTGCTATATATTTGCTTTATGGCC------AAAATGT----------------------AATAT----CCAA-----------------------------AAAAGTGAGCGG-GA---AAGTATGCGAA------ATAACTGAATAAGCC-----GAAASizeHit CountTotal NormTotal
No Reads
droEle1
GCGCGGTTTTTGCTGCTCC-CGAGTTT---------------------------------TT----ATTCTGGA-----------------------------------TTTC-A---ATGGTAACGA-----------------------------------------------------------------------------------TTGTTGCTGCTGCT-------GTATTGTCAAGG----------------------ACTATT---ATATTACCCAT--------------------------AAAAAATAATTTAT-------------------------------------------------------------------------------------------------------------------------------------TCCAA----------------AGTATTTTTG--AAAA-------------ATAAT-C------------------------------------------------AAAAATT--------GGACAA---------AC----AAGTTGGAGGAAA-----TTTTCCAGC-TACAGCTAC------AGC---TGC---------------TGCCTC--------------------------TGCCAGCGTCGCTG-----------------------------------------------------------------CCGCAGTTCGAGATAAAGGATATGCCCGGATCTAAAAGATACAGTTTTTCTTCTTGT--T-------TCTTTTTTT-------CTGCTGGTGCTGCTGC------------------------------------------------T------TCTG------CTTGGC-ATTTT-GC--------------------------------------------------------------------------------------------ACA--GCAAC---------------------------------------AGCAACAACAATCGTT--------------------------------------------------------------------------------------------------------------------GAGAAA---G-----------GACCACAAGTTT----T-------------------GCTAGAT--AAAATGT----------------------AACATACAACCAA--------------------------GAAATAAGTGAGCGC-CA---AAGTATGC-AA------ATAA--------------------SizeHit CountTotal NormTotal
No Reads
droRho1
GCGCGGTTTTTGCTGCTCC-CGAGTTT---------------------------------TT----TTTCTGGA-----------------------------------TTTC-A---ATGGTAACGA-----------------------------------------------------------------------------------TTGTTGCTGCTGCT-------GTTTCGTTGGGA----------------------ACTAGTCAAATATTACTTAT--------------------------CAAAA-------------------------------------------------------------------------------------------------------------------------ATA-AAATA------------TT--C----------------AGTATTTTTG--AAAA-------------GTAAC-CAAC----------------------------------------------AAAATT--------GGACAA---------AC----AAGTTGGCAGAAA-----GTTTCCAGC-TACA------------GC---TGC---------------TGTTTC--------------------------TGCCAGCGTCGCTG-----------------------------------------------------------------CCGCTGTTCGAGATAAAGGATATGCCCGGATCTAAAAGATACAGTTTTTCTTCTTGT--T-------CCTTTTTT--------GCGCTGCTGCGGCTGC------------------------------------------------T------TCTG------CCTGGC-ATTTT-CC--------------------------------------------------------------------------------------------ACA--GCAAT---A------GC---------------------------AACAACAACAATCGTT--------------------------------------------------------------------------------------------------------------------GAGACA---G-----------GACCTTAA----------------------------GCT------AAAATGT----------------------AACTTACAACCAA-T-------------------------AAAGAAGTGAGCGC-CA---AAGTATGC-AA------ATAAATGAATAAGCC-----GAAASizeHit CountTotal NormTotal
No Reads
droFic1
GCGCGGTTTTTGCTGCTCC-CGAGTTT---------------------------------------TTTCTGGA-----------------------------------TGT--A--AATGGTAACGA-----------------------------------------------------------------------------------TTGTTGCTGCTGCT-------GCTTTATTGAAA----------------------ACTAA-------------------------------------------------------------------------------------------------------------AATTAATATT----AATT---------------------------------TTAAAAGTTT-AAACAACCCAGAGCTTGTC-AA----------------AGTTTTTTCG--AAAA-------------GTATA-C------------------------------------------------AAAAATC--------GGACAA---------AC----AAGTTGGAGGAAA-----TTTTCCAGC-TACA------------GC---TGC---------------TGCCTC--------------------------TGCCAGCGTCGCTG-----------------------------------------------------------------CCACTGTTCGAGATAAAGGATATGCCCGGATCTAAAAGATACAGTTTTTCTTCTTGT--T-------CCTTTT-T--------CCGCTGCCGCTGCTGCTGCTGCTCGTGC------------------------------------T---TCTGCTG------CCTGGC-ATTTT-CC--------------------------------------------------------------------------------------------ACA--GC------------------------------------------AGCAACAACAATCGTT--------------------------------------------------------------------------------------------------------------------GAGACA---G-----------GACCTTAGGTAT----T-------------------GCTATGTCAAAAATGT----------------------AATATACAACCGA--------------------------AAATTAAGTGAGCGC-CA---AAGTATGC-AA------ATAAATGAATAAGCC-----GAAASizeHit CountTotal NormTotal
No Reads
droKik1
GCGCGGTTTTGGCTGCTCCCCGAGTTT---------------------------------TT--TTGTGCCTGA-----------------------------------TTTT-T--TATGGTAGCGA-----------------------------------------------------------------------------------TTGTTGCTGCT-CTGACAGCT------------------------------------------------------------------------------------------------------------------------CAAGAAAATTGCCACGCAGAAAAAAAAG-------AA-----AATATTGCCGAATAAAAATTG--------------------------------------------TCACAAAAGTTGTT-------GG-----------------------------------CCAAAAAGAAA------------AAAAGATTTGTGTTAGCCGAAA-----AGGC--------AGCCAA---------AC----AAGTTGGAGGAAA-----TTTTCCAGC-TACA------------GC---TGC---------------TGCCGC--------------------------AGCCAACGTCGCTGTCGCA----------------------------------------------GC-GCTGCCGCTGT-----GTCCGAGATAAAGGATATGCCCGGATCTAAAAGATACAGTTTTTCTT-------T-------GCTTTT-T---------CG-----------------------------CAGG------------------------------------CTG------CTTGGC-ATTTT-CC--------------------------------------------------------------------------------------------ACA--GC------------------------------------------GGCAACAACAATCGCCAACCAAAGAAG-AATTTCGTCTGCCAGCCGAAAAAAAAGAA---GAAA-T------------AAT---------------------------------------------------AA---------------------------------------------------------G------AAAATGA----------------------AACATAAAGCCAG-TGAGT------------GAGAGAGAGAGAGAAGAGAACGC-CA----AGAATGC-AAAA----ATAAATGAATAAGACCCCCAGAAASizeHit CountTotal NormTotal
No Reads
droAna3
GCGCGGTTTCTGCTGATAC-CGAATC------------------------------------------TCTAGA-----------------------------------ATT-----AATGGTAACGA-----------------------------------------------------------------------------------TTGTTGCTGCTGCT-GCTGTTG----A-----------------------------------------------------------------------TTT-------------TTTGAGAGT---------ATTTTTTAAAAGAAAAATTAGCTTACAATAAAAAAAA-------TA-----AATA------AATAAATA--G--------------------------------------------CC----------------------------------------------------------ATAGAGAAATGATCGAGCGGCAAAAGGTATATATTTTTCGAAAGG---A--AAACCCCAAG---GA---------AC----AAGTTGTGGGAAA-----TTTTCCAGC-TACGGCTAC------AGC---TGC---TGCTGTCGGTGCTGCCTC--------------------------AGTCAACGGCTCTGCAGCA----------------------------------------------GC-GCTGTCGCTGT-----GTCCGAGATAAAGGATATGCCCGGATCTAAAAGATACAGTTTTTCTTCTTTT--T-------CCTTTTT----------TGCTGCTGC------------TTGAGTTGTGCAGG------------------------------------CTG------CTTGGT-ATTTT-TCTTTATCCCA-------------------------------------------------------ACAGTAACAGCTAAGAAAAAAAA-----------AAAA---A------ACAAAAACAACTACG---------GCAACAGCAAGAACAATCGGT---------------------------------------------------------ATTTTAACGTGAAATTAACGAAGGAATT-------------------------------TAGCCA-----------------------------------------------GGTAGCA------AAAATGT----------------------A------------------------------------------------AGCAC-CGAGGGAGTATGC-AA------ATAAATTAATAAGCC-----AAAGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAAAAAAA-----------AAAA---A------ACAAAAAC.............................................................................................................................................................................................................................................................................................................................................................2311.001010000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAA-----------AAAA---A------ACAAAAACAACTA........................................................................................................................................................................................................................................................................................................................................................2120.501010000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAA-----------AAAA---A------ACAAAAAC.............................................................................................................................................................................................................................................................................................................................................................21200.051010000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAA-----------AAAA---A------ACAAAAA..............................................................................................................................................................................................................................................................................................................................................................20200.051010000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAA-----------AAAA---A------ACAAAAACAACC.........................................................................................................................................................................................................................................................................................................................................................20200.051010000
droBip1
GCGCGGTTTCTGCTGATAC-CGAATC------------------------------------------TCCAGA-----------------------------------ATT-----AATGGTAACGA-----------------------------------------------------------------------------------TTGTTGCTGCTGCT-GCTGTTG----A-----------------------------------------------------------------------TTT-------------TT--------------------TTT--AAGAAAAATTAGCTTACAAAAA----AA-----TTAA-----AATA------AATAAATA--G--------------------------------------------TCACA---------------------------------------------------------------ATGATCGAGCGGCATTAAGTATATATTTTTTGAAAGT---A--AAACCCCAAG---GA---------AC----AAGTTGTGGGAAA-----TTTTCCAGC-TACGGCTAC------AGC---TGC---TGCTGTCGCTGCTGCCTC--------------------------TGTCAGCGCCTCTGCGGCA----------------------------------------------GC-GCTGTCGCTGT-----GTCCGAGATAAAGGATATGCCCGGATCTAAAAGATACAGTTTTTCTTCTTTT--T-------CCTTTTT----------TGCTTCTTC------------TTGAGTTGTGCAGG------------------------------------CTG------CTTGGT-ATTTT-TTTTT-----------------------------------------------------TAATCCAAACAGCAACAG------------------------AAAT---A------ACAAAAACAAGAACG---------GCAACA------GCA------------------A----------------------ACAGCA---AGAA-CAATCGGTATTTTAACGTGAAACTAACGAAGGAATT-------------------------------TAGCCA-----------------------------------------------GCTAGCA------AA----------------------------------------------------------------------AATGTGAGCAC-CGAGCGAGTATGC-AA------ATAAATTAATAAGCC-----AAAGSizeHit CountTotal NormTotal
No Reads
dp5
GCGCGGTTTTTGCTGCTCT-CCAGCTT-----------------------------------------GGGGGGATTTGTGGTAAAACTTCTATCTT----------------------------CTG-----------------------------------------------------------------------------------TTGTTGCTG------------------------------------------------------------------GGTCCTCGTCCTCCTGTTGTTAAT--CACAGC------------------------------------------------------------------------AGAAA-----------------------------------------------------------------------------------------TTGTTG--AAACGAATTAGCGAGAAAGC----ACCAAAAATAAA------------A---------------CCGAGT-----AGGAAG--CCAAGGAAAA---------GC----A-----AAGGAAA-----TTTTCCAGC-TACAGCTAC------AGC---TGCTC-TGCTGCTACTGCTGCCGC--------------------------TGCGAGCGTCGCTGC----------GTCAACAGCGCTGCTGCTGCCGCGGCTGCTGCTGCT-GCTGCGGGTGCTGCTGT-----GTCCGAGATAAAGGATATGCCCGGATCTAAAAGATACAGTTTTTCTTCTTCTGTTTCAATTTTTTTTT-TTCGTGTTT--TTTGCTCC------------TTGTCTTGTGCAGG------------------------------------CTG------CTTGGC-TTTCTGGCTGCG---------------------------------------------------------------------------GAAAAGCAGAGCGGAA---C---AGC---------AA------CAACA---------GCAACA------GAAAT---------------A-----------------------------------------------------------CTAAAGCAATAATTTGTTTGGAGAATTCGTT--------------CCGACG-----------------------------------------------GCTGGCC-----AAAAATGT----------------------GGCATACAACT--------------------------------GAAGTGTGGCCCGAAGAAACTATGC-AA------ATAAATTAATATGCC-----GAAASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
GCGCGGTTCTTGCTCCTCT-CCAGTTT-----------------------------------------GGGGGA-TTTGTGGTAAAACTTCTATCTT----------------------------CTG-----------------------------------------------------------------------------------TTGTTGCTG------------------------------------------------------------------GGTCCTCGTCCTCCTGTTGTTAAT--CACAGC------------------------------------------------------------------------AGAAA-----------------------------------------------------------------------------------------TTGTTG--AAACGAATTAGCGAGAAAGC----ACCAAAAATAAA------------A---------------CCGAGG-----AGGAAG--CCAAGGAAAA---------GC----A-----AAGGAAA-----TTTTCCAGC-TACAGCTAC------AGC---TGCTC-TGCTGCTACTGCTGCCGC--------------------------TGCGAGCGTCGCTGC----------GTCAACAGCGCTGCTGCTGCCG------CTGCTGCT-GCTGCGGGTGCTGCTGT-----GTCCGAGATAAAGGATATGCCCGGATCTAAAAGATACAGTTTTTCTTCTTCTGTTTCAATTTTTTTTT-TTCGTGTTT--TTTGCTCC------------TTGTCTTGTGCAGG------------------------------------CTG------CTTGGC-TTTCTTGCTGCG---------------------------------------------------------------------------GAAAAGCAGAGCGGAA---C---AGC---------AA------CAACA---------GCAACA------GAAAT---------------A-----------------------------------------------------------CTAAAGCAATAATTTGTTTGGAGAATTCGTT--------------CCGACG-----------------------------------------------GCTGGCC-----AAAAATGT----------------------GGCATACAACT--------------------------------GAAGTGTGGCCCGAAGAAACTATGC-AA------ATAAATTAATATGCC-----GAAASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGCTGCCGC--------------------------TGCGAGCGTCG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000010
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTGCT-GCTGCGGGTGCTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2050.201010000
droWil2
GCGCGGTTTTGCCTGCTTC-TG-CT------------------------------GC---TTC-TCTTGAACGG-----------------------------------TTTT-ATTTATGGTAACTAAAAAAAAAATAAAAAAAATTGAAAAATTAAACGTAAAAACCCAAACGAAATTCAATTAAATGTAATCACAACAAATTAATAAATTATTCAAGTTTG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCTAAAAATTGTT-------TGTCACCTTTC---------------TAAATC----ACAAAAAATAA-----------------------------------------GGAAG--CAA-AAAAAAGAAAGAAAAACGAAACCGTTGAAGGAAA-----TTTTCCAGTTTACAGCTGC------TGC---------------------TGCTGC--------------------------TGCTGGTGTTGCTGCTGGC------GTC---------------------------------AACAGC-GCTGCTTGTAT-----GTCCGAGATAAAGGATATGCCCGGATCTAAAAGATACAGTTTTTCCTTTTTG--C-------CATTCATT--------CTCCTGCT---------------CGCCTCTTCC-------TGTC---------------------------CCTG------CTTGTG-CTTCT-CCTTCACCACCTTAGATGGCACTCCAGTTTACCTCAATAAACCAATTCACTTATTTTCTATCTCGGACAGCAGCAGC----------A-----ACAA---C---ATC---------AA------CAACA---------GCAACA------ACAAC---------------A-----------------------------------------------------------ATAA----------------------------------------------------------------------------------------------------------------------------------------------TAAC-AAATAA---------------------AGGTAGAAATGTGCTT-C----AACTATGC-AA------ATAAATTAATAAGCC-----AAAASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---C---ATC---------AA------CAACA---------GCAACA------.................................................................................................................................................................................................................................................................................................................................18200.05100010
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA---C---ATC---------AA------CAACA---------GCAACA------.................................................................................................................................................................................................................................................................................................................................19200.05100010
droVir3
TTGCGGTTTGTTCTTAATT-TTCATTTATGATAT-------------------------------GCTGCT--------------------------------------TTTT-T-----------AA-----------------------------------------------------------------------------------TTGTTCTTGT-----CG--TCG----ATTGTTGATTGTTGTTCTT------------------------------------------GATGTTGTTA--------------------------------------------------------------------------------------------------------------------------CTA---------AA-ATG-----------TTCTAAAAATGAG-CG-TTGA---ATTTTCG--CAAA-------------GCAGCGT-------------------------------------------------------------------AA---------------------ACGAAAAT----TTTTCCAGC-TACAGCTG---------------CTGGCGGTGCCACGGCCGCAGCTGCTAACGCTGCTGCTGCT-CTGCTCTGCTAACGCCGCTGCTGCTGCTGCTG------------------------------CTCCTGACTGC-GCTGCTGCGTT-----GTCCGAGATAAAGGATATGCCCGGATCTAAAAGATACAGTTTTTTTTTTTA-----------------------------------------------------CTTGTGCAGGCAGC--------------------------------TTG------CTTGGC-TTTTT-GCTTTGACGCTGC-GTTTG------------------TAAGC----------------GAACTTAAGCAAC-------------------------A--ACAAC---A------ACAACAACAACAACG---------GCAAAA------GAA------------------A--------------------------------------------------------ATTTA-------------------TACTGTG---TGTGCGTGCGGCTTG-AGAGCAG-AATGA-TGTGAGTGACAA------------------------GTTGGCG------AAAAAAA---------------AAAA-----------ACCGA-----------AAACGAA--AC-------AAAAATGTGCGC------AACTATGC-AA------ATAAATTAATAAGCC-----AAAGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
......................................................................................................................................................................................................................................................TGTTGTTCTT------------------------------------------GATGTTGTT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1950.201000000000000000000000000000000010000000000000000000000000000000
droMoj3
GCGCGACTGGTGCTCAACT-TGTATTT---------------------------------ATC-TGCTGCTGC------------------------------------TTT--------------AA-----------------------------------------------------------------------------------TTGTTGTTGTTGCT-GCTGTCA----ATTGTTGATTGTGGTTCTTGTTGTTGTTG--------------------CGCCATTGGACTCTATTTGTCAA-------------------------------------------------------------------------------------------------------------------ATTTG------------------------------TCA-AAAAACCCG-CCTTTCA---TTTTTGG--CGTA-------------GCAGCGT-------------------------------------------------------------------AA---------------------ATGAAAATT---TTTTTCAGC-TACAGCTG---------------CTGGCGGTGCCACGGCCGCAGCTGCTAGTGCTGCTG------CTACTCTGCCAACGTCGCAGCCGCTGCT---TTC---------------------------------GGCTGC-GCTGCTGCGCT-----GTCCGAGATAAAGGATATGCCCGGATCTAAAAGATACAGTTTTTTTTTTT-----------------------------CGCC-------------------AACTTGTGCAGGCTGC--------------------------------CTG------CTTGGC-TTTTT-GCTGTGTCGCTTC-GTTCC------------------TAAGC----------------GAACTTAAGCAGTAACAG------------------------CAAC---AACAACCACAAC------AACAATCACA---GCAAC------AACATT----------------A----------------------ACAGCAGCAGCAAAG------------A-GAGAAAATTA-------------------CAATGTG---TGTGCGTGCGGTTTGGATAGCAG-AGTAAAAATGAGTGACAA------------------------GTTGGC-----------------------------AAAA-----------ACCAA-----------AAATG-A--AC-------AAAAGTGTGCGC------AACTATGC-AA------ATAAATTAATAAGCC-----AAACSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
CCGCGGTTTGTTCTTAACT-TTTATTTATGGTATGCTGCTTTTGCTGCTGCTGCTG--------------------------------------CTACTGCTGCTGCTGTTTT-T-----------TT-----------------------------------------------------------------------------------TTCTTCTTGTTTGT-CG--TCG----ATTGTTGATTGT----------------------------------TAT--------------------------CAATT-----------------------------------CAAAAG--------------------AA----------------------------------TTCACT-------------------------------------------AAATGCGAG-CG-TTAA---ATTTT-------------------------------------------------------------------------------------------CGCCTA---------GC----AGCGTAGTCAAAATTTTTTTTTCCAGC-TACAGCTG---------------CTGGCGGTGCCACAGCCGCAGCTGCTCATGCTGCTTCTGCTGCTGCTCCGCTTACGTCGCAGCTGCTGCTGCTGCC---------------------------------GACTGC-GCTGCTGCGTT-----GTCCGAGATAAAGGATATGCCCAGATCTAAAAGATACAGTTTTTTTTT-------------------------------------------------------ACTTCTGCAGGCTGC--------------------------------TTG------CTTGGC-TTTTT-GCTGTGTCGCTCC-ATTCG------------------CAAGC----------------GAATTTAGGCAAC----------------G-----ACAA---G------A------ACAAC------AACAGCCAGAAGAACAACA------AA-------------------A----------------------ACAGCA---GAAAAC------------AACGTAAAATTA-------------------GAATGCGTGGTGTGCGTGCGGGTTG-AGAGTAA-AGTGA-AGTGAGTGACAA------------------------GTTGGC-----------------------------AAAA-----------ACTGA-----------AAATGTA--AC-------AAAAATGTGCGC------AACTATAC-AA---CAAGTAAATTAATAAGCC-----AAAGSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
..................................................................................................................................................................................................................................................................................................................................................................AAAG--------------------AA----------------------------------TTCACT-------------------------------------------AAATGCGAG-CG-TT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00101

Generated: 05/18/2015 at 04:09 PM