ID:

dsi_15781

 Coordinate:

3r:4284187-4284336 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-15.5 -14.6

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

TGGAAAGCAAAAAACAACAGAAAGAACAAATAAAACGCGGCGATGTGTGCAGCTTTGACTTAATTTCAGTGCGTTCAACCTAGGAGCAAACGAGACGGATAGCGATAGAGGGGGATGCAGAGCAAAAGCTCTCGAGCAAGTGCATCGATAGTGGGCGAGAAGGAGAGCGAGAGAGTGATGTGTTGTGTTTTTATTTACAGTTGAAGGATTATTATGTGACTTTTACAAGGCGAGACAGAGACAGCGACAA
**************************************************************************************************.............................((((((......((.(((.....))).))......)))))).......*************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR902009
testis
 M024
male body		 M053
female body
 GSM343915
embryo
 SRR553488
RT_0-2 hours eggs
...............................................................................................................................................................................................TCTTTACAGTTGAAGGATTATTATGTGA............................... 28 1 1 1.00 1 0 0 1 0 0 0 0 0
..........................................................................................................................................................GCGAGAAGGAGAGCGAGAGAG........................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 1 0
...................................................................................................................................................................................................TACAGTTGAAGGATTATTATGTGA............................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0
.................................................................................................................................................................................................................TATTATGTGACTTTTACAAGGCGAGA............... 26 0 1 1.00 1 1 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................TACAAGGCGAGACAGAGACAGCGAC.. 25 0 1 1.00 1 0 1 0 0 0 0 0 0
..................................................................................................ATAGCGATAGAGGGGGATGCAGA................................................................................................................................. 23 0 1 1.00 1 0 0 0 0 0 1 0 0
..................................................................................................................................................................................................TAAACGTTGAAGGATTATTATGTGACTT............................ 28 3 1 1.00 1 0 0 0 0 1 0 0 0
..............CGACAGAAAGAACAAATAAAACGCGG.................................................................................................................................................................................................................. 26 1 1 1.00 1 1 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................TACAAGGCGAGACAGAGACAGCGACA. 26 0 1 1.00 1 0 0 1 0 0 0 0 0
................................................................................................................................................................................................................................ACAAGGCGAGACAGA........... 15 0 2 0.50 1 0 1 0 0 0 0 0 0
...........................................................................................................................................................CGAGAAGGAGAGCGCGAGA............................................................................ 19 1 2 0.50 1 0 0 0 1 0 0 0 0
..........................................................................................................................................................ACGAGAAGGAGAGCGCGAGATT.......................................................................... 22 3 2 0.50 1 0 0 0 1 0 0 0 0
..................................................................................................ATAGCGATAGAGGGCGGT...................................................................................................................................... 18 2 2 0.50 1 0 1 0 0 0 0 0 0
.........................................................................................................................................................GACGAGAAGGAGAGCGCGAGA............................................................................ 21 2 7 0.43 3 0 0 0 3 0 0 0 0
..........................................................................................................................................................................................................................CCTTTAACAAGGTGAGACAG............ 20 3 3 0.33 1 0 1 0 0 0 0 0 0
...........................................................................................................................................................CGAGAAGGAGAGCGCGAGAT........................................................................... 20 2 3 0.33 1 0 0 0 1 0 0 0 0
...................................CGCGGCGACGCGTGAAGCTT................................................................................................................................................................................................... 20 3 4 0.25 1 0 0 0 0 0 0 0 1
TGGAAAGCATAAAACCACGG...................................................................................................................................................................................................................................... 20 3 5 0.20 1 1 0 0 0 0 0 0 0
................................................................................................................................................................AGGAGAGCAAGAGAGT.......................................................................... 16 1 11 0.09 1 0 1 0 0 0 0 0 0
............AACAACAGAAAGAAAAAA............................................................................................................................................................................................................................ 18 1 14 0.07 1 1 0 0 0 0 0 0 0
..........................................................................................................................................................................................................GAAGGATCATTAAGTGA............................... 17 2 14 0.07 1 0 0 1 0 0 0 0 0
................................................................................................................................................TCTTTAGTGGGCGAGAA......................................................................................... 17 2 15 0.07 1 0 0 0 0 0 0 0 1
...........................................................................................................................................................CGAGAAGGAGAGCGCGAG............................................................................. 18 1 19 0.05 1 0 0 0 1 0 0 0 0
.....................................................................................................................................................................................................CTGTGGAAGGATTATTA.................................... 17 2 19 0.05 1 0 1 0 0 0 0 0 0
...........................................................................................................................................................CGAGAAGGAGAGCGCGAGT............................................................................ 19 2 20 0.05 1 0 0 0 1 0 0 0 0
..................................................................................................................................................................................................................................AAGGCGAGGCAGAGA......... 15 1 20 0.05 1 0 1 0 0 0 0 0 0
..........................................................................................CGAGACCGATAGCGAA................................................................................................................................................ 16 2 20 0.05 1 0 0 1 0 0 0 0 0

Anti-sense strand reads

ACCTTTCGTTTTTTGTTGTCTTTCTTGTTTATTTTGCGCCGCTACACACGTCGAAACTGAATTAAAGTCACGCAAGTTGGATCCTCGTTTGCTCTGCCTATCGCTATCTCCCCCTACGTCTCGTTTTCGAGAGCTCGTTCACGTAGCTATCACCCGCTCTTCCTCTCGCTCTCTCACTACACAACACAAAAATAAATGTCAACTTCCTAATAATACACTGAAAATGTTCCGCTCTGTCTCTGTCGCTGTT
***************************************************************************.............................((((((......((.(((.....))).))......)))))).......************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553488
RT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 M023
head
 M024
male body		 SRR618934
dsim w501 ovaries
.......................................................................................................................................................................................ACACAAAAATCATTGTCAGCT.............................................. 21 3 3 0.33 1 1 0 0 0 0
.............TGTTGTCATGCTTCTTTATT......................................................................................................................................................................................................................... 20 3 19 0.16 3 0 3 0 0 0
....................................................................................................................................................................................................................................CCGCTCTCTCGCTGTCGTTGT. 21 3 14 0.07 1 0 0 1 0 0
......................................................................CTCAAGCTGGATCCT..................................................................................................................................................................... 15 2 20 0.05 1 1 0 0 0 0
.....................................................................................................................................................................TCGCTCTCTCACTAAA..................................................................... 16 1 20 0.05 1 0 0 0 0 1
......................................................................................................................................................................GGCTATCTCAGTACACAA.................................................................. 18 3 20 0.05 1 0 0 0 1 0

Generated: 04/24/2015 at 12:37 AM