ID:

dsi_15761

 Coordinate:

3l:7875450-7875599 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

exon [3l_7875325_7875449_+]; CDS [3l_7875325_7875449_+]; intron [3l_7875450_7896031_+]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
TGGGCAGGCTATTTAGTCTCAGTCCTTCCAGCATCAGAAGTTACGGAAATGTAAGTGGATTTTAAGTTATCTAGATGTATATAATAGTATATTATAGGGTAACCAAAGTTCCTGATTGCCGACACTTGTGTCGGCCCTTTGACTTTACAAACTCCCACTCGTAATAATTGCCGATGGCTATTTATAAACATTCTGAGGGAGCAAAGGTCATGACTCACTTGGAGTCTCTCTGGTTTTATGGTGTCCATAA
**************************************************...((.(((((((..(((((((.(((((((......)))))))...))))))).))))))))).....((((((....))))))(((((.((.((((.(((...(((.((((((...))).))))))...))).))))...)).))))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 GSM343915
embryo
 SRR618934
dsim w501 ovaries
 M053
female body
 SRR553486
Makindu_3 day-old ovaries
..................................................................................................................................................................................................GAGGGAGGAAAGGGCATG...................................... 18 2 5 1.20 6 5 0 0 1 0
.................CTCAGTCCTTCCAGCATCAGAAGT................................................................................................................................................................................................................. 24 0 1 1.00 1 0 1 0 0 0
................................................................................................................................................................................................................................TCAGTCTGGTTCTATGGTGT...... 20 3 4 0.25 1 0 0 1 0 0
............................................................................................................................................................................................CATTCTGAGGGAGCGA.............................................. 16 1 5 0.20 1 0 0 0 0 1
.......................................................................................TATATTGTAGGGTAAGC.................................................................................................................................................. 17 2 13 0.08 1 0 0 1 0 0
.......................................TTTACGGAAATGTAA.................................................................................................................................................................................................... 15 1 20 0.05 1 0 0 1 0 0
...............CTCTCAGTCCTTCCCG........................................................................................................................................................................................................................... 16 2 20 0.05 1 0 0 1 0 0

Anti-sense strand reads

ACCCGTCCGATAAATCAGAGTCAGGAAGGTCGTAGTCTTCAATGCCTTTACATTCACCTAAAATTCAATAGATCTACATATATTATCATATAATATCCCATTGGTTTCAAGGACTAACGGCTGTGAACACAGCCGGGAAACTGAAATGTTTGAGGGTGAGCATTATTAACGGCTACCGATAAATATTTGTAAGACTCCCTCGTTTCCAGTACTGAGTGAACCTCAGAGAGACCAAAATACCACAGGTATT
**************************************************...((.(((((((..(((((((.(((((((......)))))))...))))))).))))))))).....((((((....))))))(((((.((.((((.(((...(((.((((((...))).))))))...))).))))...)).))))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 GSM343915
embryo
 SRR553485
Chicharo_3 day-old ovaries
 M053
female body
 M024
male body
..................................................................................................................................................................................................................................AGACACCGAAATACCACAG..... 19 2 2 0.50 1 1 0 0 0 0 0
.................................................................................................................................................................................................................................GAGAGACCCAACTACCACA...... 19 2 2 0.50 1 0 0 1 0 0 0
...........AAATAAGAGTCAGGAAG.............................................................................................................................................................................................................................. 17 1 2 0.50 1 0 1 0 0 0 0
.............................................................................................................................................................................................TAAGGCTCCCTGGTTTCC........................................... 18 2 3 0.33 1 0 0 0 1 0 0
...................................................................................................................................................................................TAAAGGTTGGTAAGACTCCCT.................................................. 21 3 6 0.17 1 0 0 0 0 1 0
......................................................................................................................................................................................AGGTTTGTAAGACTCCCT.................................................. 18 2 6 0.17 1 1 0 0 0 0 0
..................................................................................................................................................................................CTAAATGTTGGTAAGACTCC.................................................... 20 3 10 0.10 1 0 0 0 0 0 1
.........................................................................................................................................................................................................................GAACCTCAGAAAGTCCA................ 17 2 18 0.06 1 0 0 0 1 0 0
........................................................................................................................................................................................GTTGGTAAGACTCCCTTG................................................ 18 3 20 0.05 1 0 0 0 0 1 0

Generated: 04/24/2015 at 10:31 AM