ID:

dsi_15755

 Coordinate:

3r:17389589-17389645 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-10.4 -10.0 -10.0 -9.6

Flybase annnotation

CDS [3r_17389333_17389588_-]; exon [3r_17389176_17389588_-]; CDS [3r_17389646_17390235_-]; exon [3r_17389646_17390264_-]; intron [3r_17389589_17389645_-]

No Repeatable elements found

Sense Strand Reads

##################################################---------------------------------------------------------##################################################
GGCAAGGCCAAGGACTTCAGTCCGCGCGCTCGATTCCGCAGCTGGCTGGGGTGAGTAGACTCCAAACGGAAGATCCCACCTGAATTAATGTTCACATGGCCTTACAGATACGAGCTGCCATTCGATAGGCATGACTGGATAGTCGATCGCTGTGGCA
**************************************************((.................(((...(((..(((((....)))))..))).)))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR902008
ovaries
 SRR902009
testis
 SRR553486
Makindu_3 day-old ovaries
 M024
male body		 M025
embryo
 M053
female body
 SRR553485
Chicharo_3 day-old ovaries
 GSM343915
embryo
 SRR553488
RT_0-2 hours eggs
.............................................................................................................................TAGGCATGACTGGATAGTCGATCGC....... 25 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
........................CGCGCTCGATTCCGCAGCTGGCTGGGA.......................................................................................................... 27 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
..................................................GTGAGTAGACTCCAAACGGAAGATC.................................................................................. 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
..................................................................................................................................ATGACTGGATAGTCGATCGCG...... 21 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0
.......................................................................................................TGGGATACGAGCTGCCATTCGATAGGC........................... 27 3 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.................................................................................................................................CATGACTGGATAGTCGATCGCTGT.... 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................CGATAGGCATGACTGGAT................. 18 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0
..................................................GTGAGTAGACTCCAAACGGAAA..................................................................................... 22 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
..................................................................................................................CTGCCATTCGATAGGCATGACTGGA.................. 25 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0
...AAGGCCAAGGACTTC........................................................................................................................................... 15 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................GATAGTCGATCGCTGTGGCA 20 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
............................................................................................................................ATAGGCATGACTGGATAGTCGATCGC....... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...................................................................................................................TGCCATTCGATAGGCATGACTGGATAGTC............. 29 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0
...........................................................................................................TTACGAGCTGCGATCCGATA.............................. 20 3 8 0.88 7 0 0 0 7 0 0 0 0 0 0 0
.....................................GCAGCTGGCTGGGGT......................................................................................................... 15 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
..........................................TGGCTGGGGTGAGTA.................................................................................................... 15 0 4 0.25 1 1 0 0 0 0 0 0 0 0 0 0
..................................................................................GATTAATGTTCTCATGGACT....................................................... 20 3 10 0.20 2 0 0 0 0 2 0 0 0 0 0 0
........................................................................................................................................GGATAGTCGGTCGCT...... 15 1 6 0.17 1 0 0 0 0 0 0 0 0 0 0 1
.............................................................................................................................................GTCGATCGCTCTGGC. 15 1 11 0.09 1 0 0 0 0 0 0 0 0 0 0 1
..................................................TTGAGTAGACTCCAAAAGAAA...................................................................................... 21 3 11 0.09 1 0 0 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

CCGTTCCGGTTCCTGAAGTCAGGCGCGCGAGCTAAGGCGTCGACCGACCCCACTCATCTGAGGTTTGCCTTCTAGGGTGGACTTAATTACAAGTGTACCGGAATGTCTATGCTCGACGGTAAGCTATCCGTACTGACCTATCAGCTAGCGACACCGT
**************************************************((.................(((...(((..(((((....)))))..))).)))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
.............................................................GGTTTGCCTCCTTGGG................................................................................ 16 2 20 3.95 79 79 0 0
...............CAGTCAGGCGCGCGA............................................................................................................................... 15 1 2 0.50 1 1 0 0
..........................................ACCGACCCCACTCAT.................................................................................................... 15 0 4 0.25 1 1 0 0
..............GAAGGCAGGAGCTCGAGCTA........................................................................................................................... 20 3 7 0.14 1 0 1 0
...................................................................................TAATTACAAGAGTACCTGAC...................................................... 20 3 11 0.09 1 1 0 0
.........................................................................................................................AGTTCCCCGTACTGACCTA................. 19 3 11 0.09 1 0 0 1
..................................................................................TTGATGACAAGTGTACC.......................................................... 17 2 18 0.06 1 1 0 0
............................GAGTTTAGGCGTCGACCAA.............................................................................................................. 19 3 20 0.05 1 0 1 0

Generated: 04/23/2015 at 06:35 PM