dsi_15752

five_prime_UTR [2r_20082035_20082099_-]; exon [2r_20082035_20082099_-]; exon [2r_20081554_20081941_-]; CDS [2r_20081554_20081941_-]; intron [2r_20081942_20082034_-]

##################################################---------------------------------------------------------------------------------------------################################################## GCCGCGAATCGAAGCAGACGCGTTTATCCAAGTGAATTGAATCTAAAAAGGTACGAGAAAGGACAGAGCCAACGCGGAATTTATTGTGCAGTGAAGAAGTGAAGTGATTAGCTCATTGTCGTCTCGTTTCTTGATCAAAGCAGATGTCCGTAGTGCCACTGATGTTCCGTGACTGGTGGGATGAGCTCGACTT ************************************************...........((((((((.(((((...((((.((........)).))))...))).)).))))..)))).**********************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M025 embryo	GSM343915 embryo	SRR553486 Makindu_3 day-old ovaries	M023 head	M024 male body	O002 Head	SRR553485 Chicharo_3 day-old ovaries	SRR618934 dsim w501 ovaries	O001 Testis	SRR553487 NRT_0-2 hours eggs
..................................................GTACGAGAAAGGACAGAG.............................................................................................................................	18	0	1	2.00	2	2	0	0	0	0	0	0	0	0	0
.......................................................................................................................................CTAAAAAGATGTCCGTAGTGCCACT.................................	25	3	1	2.00	2	2	0	0	0	0	0	0	0	0	0
..CGCGAATCGAAGCAGACGCG...........................................................................................................................................................................	20	0	1	2.00	2	0	0	0	2	0	0	0	0	0	0
.................................................................................................................................................GTCCGTAGTGCCACTGATGTTCCGTGG.....................	27	1	1	1.00	1	1	0	0	0	0	0	0	0	0	0
................................................................................................AAGTGAAGTGATTAGCTCATTGTCG........................................................................	25	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................................................AGGTACGAGAAAGGACAG...............................................................................................................................	18	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................ACTGATGTTCCGTGACTGGTGGGAT...........	25	0	1	1.00	1	0	0	1	0	0	0	0	0	0	0
....................................................................................................................TATCGTCTCGTTTCTTGATCAAAGCA...................................................	26	1	1	1.00	1	0	0	0	0	0	0	1	0	0	0
..........GAAGCAGACGCGTTTATCCAAGT................................................................................................................................................................	23	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................CTCGTTTCTTGATCAAAGCAG..................................................	21	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................TCAGAGACTGGTTGGATGAGCTCG....	24	3	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..CGCGAATCGAAGCAGACG.............................................................................................................................................................................	18	0	1	1.00	1	0	0	0	0	1	0	0	0	0	0
.......................................................................................................................................................AGTGCCACTGATGTTCCGTGA.....................	21	0	1	1.00	1	0	0	1	0	0	0	0	0	0	0
..................................................................................ATTGTGCAGTGAAGAAGTGAAG.........................................................................................	22	0	1	1.00	1	0	0	0	0	0	1	0	0	0	0
............................................TAAAAGGTACGAGATAGG...................................................................................................................................	18	2	3	0.33	1	0	0	0	0	0	0	0	1	0	0
...............................................................................................................................TTCTTGATCAAAGTAG..................................................	16	1	6	0.17	1	0	0	0	0	0	0	0	1	0	0
.............................................................................................................................GCTTCTTGATCAAAGC....................................................	16	1	7	0.14	1	0	0	0	0	0	0	0	1	0	0
........................................................................CGCGGAATTGAGTGTGGAGT.....................................................................................................	20	3	8	0.13	1	0	0	0	0	0	0	0	0	1	0
.....GTATCGAAGCTAACGCGTT.........................................................................................................................................................................	19	3	14	0.07	1	0	0	1	0	0	0	0	0	0	0
.........................................................................................................................................................................TGACTGGTGGGATCCCCT......	18	3	20	0.05	1	0	0	0	1	0	0	0	0	0	0
GACGCTAATCGGAGCAGA...............................................................................................................................................................................	18	3	20	0.05	1	0	0	0	0	0	0	0	0	0	1

CGGCGCTTAGCTTCGTCTGCGCAAATAGGTTCACTTAACTTAGATTTTTCCATGCTCTTTCCTGTCTCGGTTGCGCCTTAAATAACACGTCACTTCTTCACTTCACTAATCGAGTAACAGCAGAGCAAAGAACTAGTTTCGTCTACAGGCATCACGGTGACTACAAGGCACTGACCACCCTACTCGAGCTGAA **********************************************************************...........((((((((.(((((...((((.((........)).))))...))).)).))))..)))).************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553488 RT_0-2 hours eggs
.............................................................................................................................CAAAGAACTAGTACCGT...................................................	17	2	20	0.05	1	1

Species	Coordinate	ID	Alignment
droSim2	2r:20081892-20082084 -	dsi_15752	GCCGCGAATCGAAGCAGAC-GCGTTTATC----------------------------------------C-------AAGT---GAATTGA----ATCT--AAAAAGGTACGAGA---AAGGACA--GAGCCAAC---GC---------GGAA-----------------------------------------------------------------------------------------TT----------TATTGTGCAGTGA-------------------------------------AGAAGTG------------AAGTGATTAGCTCATTG-TCG----TCTCGTTTC------TTGATCAA-AGCAGATGTCCGTAGTGCCACTGATGTTCCGTGACTGGTGGGATGAGCTCGACTT
droSec2	scaffold_9:2852089-2852281 -		GCCGCGAATCGAAGCAGAC-GCGTTTATC----------------------------------------C-------AAGT---GAATTGA----ATCT--AAAAAGGTACGAGG---AAGGACC--GAGCCAAC---GC---------GGAA-----------------------------------------------------------------------------------------TT----------TATTGTGCAGTGA-------------------------------------AGAAGTG------------AAGTGATTGGCTCATTA-TCG----TCTCGTTTC------TTGATCAA-AGCAGATGTCCGTAGTGCCACTGATGTTCCGTGACTGGTGGGATGAGCTCGACTT
dm3	chr2R:19572856-19573048 -		GCCGCGAATCGAAGCAGAC-GCGTTTATC----------------------------------------C-------AAGT---GAATTGA----ATCT--AAAAAGGTACGAGG---AAGGACC--AAGCCAAC---GC---------GGAA-----------------------------------------------------------------------------------------TT----------TATTGAACAGTGA-------------------------------------AGAAGTG------------AAGTGATTAGCTCACTA-TCG----TCTCGTTTC------TTGATCAA-AGCAGATGTCCGTAGTGCCACTGATGTTCCGTGACTGGTGGGATGAGCTCGACTT
droEre2	scaffold_4845:20934678-20934867 -		GCCGCGAATCGAAACAGAC-GCGCCCATT----------------------------------------A-------ACGT---GAATTGA----ATCT-----AAGGTACGAGG---AAGGACA--AAGCCCAC---GC---------GGAA-----------------------------------------------------------------------------------------TA----------CATTGGAGAGTGA-------------------------------------AAAAGGG------------CAGTGATTAGCTCACAA-TCG----TCTCGTTTC------TTGATCAA-ACCAGATGTCCGTAGTGCCCCTGATGTTCCGTGACTGGTGGGATGAGCTGGACTT
droYak3	2R:19549596-19549791 -		GCCGCGAATCGATACAGAC-GCGTTTATC----------------------------------------A-------ACGT---GAATTCA----ATCT--AAAAAGGTACGAGA---AAGGACA--AAGCCAAC---GT---------GGAA----------------------------TA---TA----TC------------------A------------------------AATATTATTA--------------TAGTGA-------------------------------------AGAAGTG------------CAGTGATTATCGT-------G----TCTCTTCTT-----CTCGATCAA-AGCAGATGTCCGTAGTGCCCCTGATGTTCCGCGACTGGTGGGATGAGCTCGACTT
droEug1	scf7180000409474:72232-72434 +		GCCGCGAATCGAAAAAGAC-GCGTTTATC----------------------------------------G-------AAGT---GAATAAA----ATCT-AGAAAAGGTACGAAGGGGAAGGATA--AT--------------------------------------------------------ATATA-------TATA--T----AAAAG------------------------AGGACAATAAGTGCA------------------------------------------------A-TAATTAGTG------------AAGTGCTTGGCTCACTA-TCG----TCTCGTTTC------TTGACCAA-ATTAGATGTCCGTAGTGCCCCTGATGTTCCGTGACTGGTGGGATGAGCTCGACTT
droBia1	scf7180000301754:4041618-4041836 -		GCCGCGAATCGAAGAAGAC-GCGTTAAGT--------------------GT------------------T-------AAGT---GAATAAA----ATCG-CAGAAAGGTACGAGA---AAGGATA--TATTTAAT---A---------------------TCTA---------ATAAAGAAAAGAATATA-------TGTA--C----A----------------------------AAAACAATAAGTGGA------------------------------------------------T-TAAAAAGTG------------AAGTGA--AGCTCACTA-TCG----TCTCGTTTC------TTGACCAC-ATTAGATGTCCGTAGTGCCCCTGATGTTCCGTGACTGGTGGGATGAGCTCGACTT
droTak1	scf7180000415306:102937-103152 +		GCCGCGAATCGAAACAGAC-GTGTTAATC----------------------------------------G-------AAGT---GAATAAA----ATCCAAAAAAAGGTACGAAA---AAGGATA--AATAAAA-----------------AA-------TATTTAAATAT----------------------T--AAAAA--T----AAAAG------------------------AGAACAATTAGTGAT------------------------------------------------T-TTAAAAGTG------------AAGTGATTAGCTCACTA-TCG----TCTCGTTTC------TTGATCAA-ATTAGATGTCCGTAGTGCCCCTGATGTTCCGTGACTGGTGGGATGAGCTCGACTT
droEle1	scf7180000491201:1204487-1204699 +		GCCGCGAACCGAAAAAGAC-ACGCGAATC----------------------------------------G-------AAGT---GAATAAA----ATCG--AAAAAGGTACGAAA---AAGGATA--CATCCACC---TG---------AGAA----------------------------AA--------TTCGAATACA-------ATATA------------------------AGGACAATAAGTGCA------------------------------------------------A-TAATTAGTG------------AAGTGTTTGGCTCACTA-TCG----TCTCGTTTC------TTGACCAA-ATTAGATGTCCGTAGTGCCCCTGATGTTCCGTGATTGGTGGGATGAGCTCGACTT
droRho1	scf7180000778122:84604-84819 +		ACCGCGAAACGGAAAAGAC-ACACGAGTC----------------------------------------A-------AAGT---GAATTAA----ATCT--AGAAAGGTACGAAA---AAGGATA--CATCCAGC-------------------------TATA--------------GAAAAAAATACT-------TCTA--A----AAAAA------------------------AAGACAATAAGTGCA------------------------------------------------A-TAATTAGTG------------AAGTGATTGGCTCACTA-TCG----TCTCGTTTT------TTGACCAA-ATTAGATGTCCGTAGTGCCCCTGATGTTCCGTGATTGGTGGGATGAGCTCGACTT
droFic1	scf7180000453809:639878-640104 +		GCCGCGAATCGAAAAAGAC-ACGCGAATC--------------------GAG------A-------GATCGGAA--AAAATATTAAAT--A----AACC--AACAAGGTACGAAG---AAGGATA--TATCCAAA-------------------------TATA--------------------------GAGA--AAATA--ATCCAACAAGT-----------------------GAAATTATAAGTGCA------------------------------------------------A-TAATTAGTG------------AAGTGTTTGGCTCACTA-TCG----TCTCGTTTT------TTGACCAA-ATTAGATGTCCGTAGTGCCCCTGATGTTCCGTGACTGGTGGGATGAGCTCGATTT
droKik1	scf7180000302470:2159467-2159646 +		GCGGCGAATAGAAAACCAC-ACGCGAATC--------------------GTA------C-------GATCG--------------AAA-AG----ATAT-AGCCAAGGTACGCAA---AAGGATACAAAGCTA-----------------------------G-------------------------------------------------A------------------------AGGACTACAAGTGC-----------------------------------------------------------C------------AAGTGATTAGCTT-------G----ATTATTTCC------TTGATCAAAACCAGATGTCCGTAGTGCCCCTGATGTTCCGTGATTGGTGGGATGAGCTTGACTT
droAna3	scaffold_13266:8210611-8210830 -		GACGCGAATCGAAAAAGAC-ACGCGAATC--------------------GTA------A-------GATCGGAACT-AAAT---A-AT-TA----ACCAAAAAAAAGGTACGA------AGGATA--CACCAAGT-------------------------TGTA--------------------------AAGC--ATATA--T----AAAAG------------------------TGGAATATCTGTGCA------------------------------------------------ACTGATTGGTG------------ACGTGATTAGCTCACAA-TCG----TCTCGTTTT------TTGACCAA-ACTAGATGTCCGTAGTGCCCCTGATGTTCCGTGATTGGTGGGATGAGCTCGATTT
droBip1	scf7180000396759:606408-606632 +		ACCGCGAATCGAAAAAGAC-ACGCGAATC--------------------GTA------A-------GATCGGAATT-AAAT---A-AT-TA----ACCA--ATAAAGGTACGAATC--AAGGATA--CTTCAAGT-------------------------TAAA--------------------------AAGCGAATATATAC-----TAAG------------------------TGGAATTACTGTGCA------------------------------------------------ACTAACTGGTG------------ACGTGATTAGCTCACAA-TCG----TCTTGTTTT------TTGACCAA-ACTAGATGTCCGTAGTGCCCCTGATGTTCCGTGATTGGTGGGATGAGCTCGACTT
dp5	3:9427914-9428094 +		GCGGCGAATCAAGAAAGATCGGGA-ATAC----------------------------------------G-------AAAT---ATATAAA--AGA----ATCAAAGGTACAAATCG-GAGGATA--TATA---------------------------------------------------------------------------------G------------------------AGGACTATTTGC----------------------------------------------------------------------------GCCATTAGCTCACCGTTCG----TATCGTTTCTCCATCTCCATCAA-CGTAGATGTCCGTTGTGCCCCTAATGTTCCGCGACTGGTGGGATGAGATTGACTT
droPer2	scaffold_4:4750248-4750428 +		GCGGCGAATCAAGAAAGATCGGGA-ATAC----------------------------------------G-------AAAT---ATATAAA--AGA----ATCAAAGGTACAAATCG-GAGGATA--TATA---------------------------------------------------------------------------------G------------------------AGGACTATTTGC----------------------------------------------------------------------------GCCATTAGCTCACCGTTCG----TATCGTTTCTCCATCTCCATCAA-CGTAGATGTCCGTTGTGCCCCTAATGTTCCGCGACTGGTGGGATGAGATTGACTT
droWil2	scf2_1100000004954:2476022-2476207 +		AACACGAATAGAGAAAGAC-GTGTGCGTG--------------------TGG------A-------GACC-------AGCT---GAATTAGGATAA----ACCAAAGGTACGAGACG-AAGGATT--AACAAGGC---------------------------------------------------------T--------------------------------------------CGGTTATAGTGT-------------------------------------------------------------G------------AA---ATTTACTGGTTT-TCAATTGGCTCTGTGT------T-----TA-CGTAGATGTCTGTAGTGCCTCTAATGTTCCGCGACTGGTGGGATGAACTCGATTT
droVir3	scaffold_12875:1199782-1200067 -		AACGCGAAACGGAATATAC-AAGAAAATAAATTCAGTTGCTTTTTGTCGGTGACTAAT----------CC-------AC-----GAAT--A----ATCC--ACAAAGGTACAAGGCA-CAGAATA--T--TAAAA-------------------------TGTATAAATATTTATAAAGAAAA--------TTCG-------------AAAAAAGAAAAAACGATCGTAAACATTTTCGACTGATCCGTTCG------------------------------------------------ACTAACTGGTGATGCGCATTAAT-TGCCATTAGCTCT--G-TCT-A--TCTCTTCT--GT-TCTCCTGTCA-CGTAGATGTCCGTTGTGCCTCTAATGTTCCGCGACTGGTGGGATGAGCTTGAATT
droMoj3	scaffold_6496:4266782-4267025 -		ACCGCGAATCGGAAAACAC-GAAAAATTC---------------------TA------CATTCTGTGATT-------AATT---GGATT------ATTT-AGCAAAGGTACGAAA---GGTAGCC--AAA----TTATACAAACAAAAAAAAGTTTAATATAAA--------------------------ATGAAAATATATAT----AAAAA-----------T-TCAAACGTTT-CGGATTA-------------------------------------------------------------T-AGAT---------AAC-TGCCATTAGCTTGTTA-TCT-TCTTCTCA-TT---------CTTC-A-AATAGATGTCCGTTGTTCCTCTAATGTTCCGTGATTGGTGGGATGAGCTTGACTT
droGri2	scaffold_15245:9784622-9784891 +		GCCGCGAAACGGAATAGAC-GCAAAAAAA--------------------GCGAGAAAT----------TCA-----AAAGT---G--ATCA----ATTA--GCAAAGGTACATGG---AATGACA--AGAATAAT---AC---------AA-------------------------------------------------A--T----AAAAA------------------------CATATATCAGATACACTAGTTGTGAAGTGATTGGAGTGATGTGATTTAATTTGATTTCATTTGACTAACCGAAGATGTGCATTAAC-TGCCATTAGCTT--TA-TCT----TCTCTTCTT-----CTCACGCCA-CGTAGATGTCCGTAGTTCCTCTAATGTTCCGCGACTGGTGGGATGAGCTCGACTT

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

GCCGCGAATCGAAGCAGAC-GCGTTTATC----------------------------------------C-------AAGT---GAATTGA----ATCT--AAAAAGGTACGAGA---AAGGACA--GAGCCAAC---GC---------GGAA-----------------------------------------------------------------------------------------TT----------TATTGTGCAGTGA-------------------------------------AGAAGTG------------AAGTGATTAGCTCATTG-TCG----TCTCGTTTC------TTGATCAA-AGCAGATGTCCGTAGTGCCACTGATGTTCCGTGACTGGTGGGATGAGCTCGACTT	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
...........................................................................................................GTACGAGA---AAGGACA--GAG.........................................................................................................................................................................................................................................................................................................	18	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..CGCGAATCGAAGCAGAC-GCG....................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................GTCCGTAGTGCCACTGATGTTCCGTGG.....................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................AAGTG------------AAGTGATTAGCTCATTG-TCG----...............................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
.........................................................................................................AGGTACGAGA---AAGGACA--G...........................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................ACTGATGTTCCGTGACTGGTGGGAT...........	25	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
..........GAAGCAGAC-GCGTTTATC----------------------------------------C-------AAGT---.......................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................CTCGTTTC------TTGATCAA-AGCAG..................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..CGCGAATCGAAGCAGAC-G......................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................AGTGCCACTGATGTTCCGTGA.....................	21	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................ATTGTGCAGTGA-------------------------------------AGAAGTG------------AAG.....................................................................................................	22	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0

droSec2

GCCGCGAATCGAAGCAGAC-GCGTTTATC----------------------------------------C-------AAGT---GAATTGA----ATCT--AAAAAGGTACGAGG---AAGGACC--GAGCCAAC---GC---------GGAA-----------------------------------------------------------------------------------------TT----------TATTGTGCAGTGA-------------------------------------AGAAGTG------------AAGTGATTGGCTCATTA-TCG----TCTCGTTTC------TTGATCAA-AGCAGATGTCCGTAGTGCCACTGATGTTCCGTGACTGGTGGGATGAGCTCGACTT	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
...................................................................................................................................................................................................................................................................................................................AGTG------------AAGTGATTGGCTCA..........................................................................................	18	1	1.00	1	0	0	0	1
.CCGCGAATCGAAGCAGAC-G......................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1
........................................................................................................................................................................................................................................................................................................................................................................................................................GGTGGGATGAGCTCGACT.	18	1	1.00	1	0	0	0	1
............AGCAGAC-GCGTTTATC----------------------------------------C-------A.............................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0
........................................................................................................................................................A-----------------------------------------------------------------------------------------TT----------TATTGTGCAGTGA-------------------------------------AGAAGTG------------AAG.....................................................................................................	26	1	1.00	1	0	1	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................GTGACTGGTGGGATGAGC.......	18	1	1.00	1	0	0	0	1

dm3

GCCGCGAATCGAAGCAGAC-GCGTTTATC----------------------------------------C-------AAGT---GAATTGA----ATCT--AAAAAGGTACGAGG---AAGGACC--AAGCCAAC---GC---------GGAA-----------------------------------------------------------------------------------------TT----------TATTGAACAGTGA-------------------------------------AGAAGTG------------AAGTGATTAGCTCACTA-TCG----TCTCGTTTC------TTGATCAA-AGCAGATGTCCGTAGTGCCACTGATGTTCCGTGACTGGTGGGATGAGCTCGACTT	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
GCCGCGAATCGAAGCAGA.........................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................GTGACTGGTGGGATGAGC.......	18	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................GTGACTGGTGGGATGAGCT......	19	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
......................GTTTATC----------------------------------------C-------AAGT---GAATTGA----ATCT--AAAAAGC...............................................................................................................................................................................................................................................................................................................................	30	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............AGCAGAC-GCGTTTATC----------------------------------------C-------AAGT---GA.....................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................G----TCTCGTTTC------TTGATCAA-AGCAG..................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................GACTGGTGGGATGAGCT......	17	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........TCGAAGCAGAC-GCGTTTAT...............................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
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........................................................................................................................................................................................................................................................................................................................................................................................GATGTCCGTAGTGCCACTGAT..............................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................TGTCCGTAGTGCCACTGAT..............................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................TGATGTTCCGTGACTGGTGGGAT...........	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...........................................................................................................GTACGAGG---AAGGACC--AAG.........................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
.........................TATC----------------------------------------C-------AAGT---GAATTGA----ATCT--......................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
GCCGCGAATCGAAGCAGAC-GCGT...................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................GAACAGTGA-------------------------------------AGAAGTG------------AAGT....................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................TTC------TTGATCAA-AGCAGATC...............................................	19	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................TTC------TTGATCAA-AGCAGCA................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

GCCGCGAATCGAAACAGAC-GCGCCCATT----------------------------------------A-------ACGT---GAATTGA----ATCT-----AAGGTACGAGG---AAGGACA--AAGCCCAC---GC---------GGAA-----------------------------------------------------------------------------------------TA----------CATTGGAGAGTGA-------------------------------------AAAAGGG------------CAGTGATTAGCTCACAA-TCG----TCTCGTTTC------TTGATCAA-ACCAGATGTCCGTAGTGCCCCTGATGTTCCGTGACTGGTGGGATGAGCTGGACTT	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
............................................................................................................TACGAGG---AAGGACA--AAGCCCAC---GC---------......................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1	0
.........................................................................................................................................................................................................................................................................................................................................................................................................TGATGTTCCGTGACTGGTGG..............	20	1	1.00	1	0	0	0	1	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................CTGATGTTCCGTGACTGGTGGGA............	23	1	1.00	1	0	0	0	0	0	1	0
........................................................................................................................................................................................................................................................................................................................................................................................................................GGTGGGATGAGCTGGACTT	19	1	1.00	1	0	0	0	0	1	0	0
..........................................................................................................GGTACGAGG---AAGGACA--AAGCCC......................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0	0
.......................................................................................................................................................AA-----------------------------------------------------------------------------------------TA----------CATTGGAGAGTGA-------------------------------------AAAAG......................................................................................................................	22	1	1.00	1	0	0	0	0	0	1	0
....................GCGCCCATT----------------------------------------A-------ACGT---GAATTGA----ATC.........................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................AAAAGGG------------CAGTGATTAGC.............................................................................................	18	1	1.00	1	0	0	0	1	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................CGTGACTGGTGGGATGAGCTG.....	21	1	1.00	1	0	0	0	0	1	0	0
.........................................................................................................................GACA--AAGCCCAC---GC---------GGAA-----------------------------------------------------------------------------------------TA----------CATT.........................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0	0
..CGCGAATCGAAACAGAC-G......................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	1	0
..............................................................................................................................................................................................................................................................................................................................................................................................CGTAGTGCCCCTGATGTTCCGTGACT...................	26	1	1.00	1	0	1	0	0	0	0	0

droYak3

GCCGCGAATCGATACAGAC-GCGTTTATC----------------------------------------A-------ACGT---GAATTCA----ATCT--AAAAAGGTACGAGA---AAGGACA--AAGCCAAC---GT---------GGAA----------------------------TA---TA----TC------------------A------------------------AATATTATTA--------------TAGTGA-------------------------------------AGAAGTG------------CAGTGATTATCGT-------G----TCTCTTCTT-----CTCGATCAA-AGCAGATGTCCGTAGTGCCCCTGATGTTCCGCGACTGGTGGGATGAGCTCGACTT	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
............................................................................................................................A--AAGCCAAC---GT---------GGAA----------------------------TA---TA----TC------------------.......................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.............................................................................................................ACGAGA---AAGGACA--AAGCCAAC---G................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.....GAATCGATACAGAC-GCGTTTATC----------------------------------------......................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
............TACAGAC-GCGTTTATC----------------------------------------A-------ACGT---G......................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................TCTCTTCTT-----CTCGATCAA-AGCAG..................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
GCCGCGAATCGATACAGAC-G......................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................GT-------G----TCTCTTCTT-----CTCGATCAA-AGCAG..................................................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...........................................................................................................GTACGAGA---AAGGACA--AAGCCAAC---GT---------GG....................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.......ATCGATACAGAC-GCGTTTATC----------------------------------------A-------AC............................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................GATGTCCGTAGTGCCCCTGATGTT...........................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0

droEug1

GCCGCGAATCGAAAAAGAC-GCGTTTATC----------------------------------------G-------AAGT---GAATAAA----ATCT-AGAAAAGGTACGAAGGGGAAGGATA--AT--------------------------------------------------------ATATA-------TATA--T----AAAAG------------------------AGGACAATAAGTGCA------------------------------------------------A-TAATTAGTG------------AAGTGCTTGGCTCACTA-TCG----TCTCGTTTC------TTGACCAA-ATTAGATGTCCGTAGTGCCCCTGATGTTCCGTGACTGGTGGGATGAGCTCGACTT	Size	Hit Count	Total Norm	Total
No Reads

droBia1

GCCGCGAATCGAAGAAGAC-GCGTTAAGT--------------------GT------------------T-------AAGT---GAATAAA----ATCG-CAGAAAGGTACGAGA---AAGGATA--TATTTAAT---A---------------------TCTA---------ATAAAGAAAAGAATATA-------TGTA--C----A----------------------------AAAACAATAAGTGGA------------------------------------------------T-TAAAAAGTG------------AAGTGA--AGCTCACTA-TCG----TCTCGTTTC------TTGACCAC-ATTAGATGTCCGTAGTGCCCCTGATGTTCCGTGACTGGTGGGATGAGCTCGACTT	Size	Hit Count	Total Norm	Total
No Reads

droTak1

GCCGCGAATCGAAACAGAC-GTGTTAATC----------------------------------------G-------AAGT---GAATAAA----ATCCAAAAAAAGGTACGAAA---AAGGATA--AATAAAA-----------------AA-------TATTTAAATAT----------------------T--AAAAA--T----AAAAG------------------------AGAACAATTAGTGAT------------------------------------------------T-TTAAAAGTG------------AAGTGATTAGCTCACTA-TCG----TCTCGTTTC------TTGATCAA-ATTAGATGTCCGTAGTGCCCCTGATGTTCCGTGACTGGTGGGATGAGCTCGACTT	Size	Hit Count	Total Norm	Total
No Reads

droEle1

GCCGCGAACCGAAAAAGAC-ACGCGAATC----------------------------------------G-------AAGT---GAATAAA----ATCG--AAAAAGGTACGAAA---AAGGATA--CATCCACC---TG---------AGAA----------------------------AA--------TTCGAATACA-------ATATA------------------------AGGACAATAAGTGCA------------------------------------------------A-TAATTAGTG------------AAGTGTTTGGCTCACTA-TCG----TCTCGTTTC------TTGACCAA-ATTAGATGTCCGTAGTGCCCCTGATGTTCCGTGATTGGTGGGATGAGCTCGACTT	Size	Hit Count	Total Norm	Total
No Reads

droRho1

ACCGCGAAACGGAAAAGAC-ACACGAGTC----------------------------------------A-------AAGT---GAATTAA----ATCT--AGAAAGGTACGAAA---AAGGATA--CATCCAGC-------------------------TATA--------------GAAAAAAATACT-------TCTA--A----AAAAA------------------------AAGACAATAAGTGCA------------------------------------------------A-TAATTAGTG------------AAGTGATTGGCTCACTA-TCG----TCTCGTTTT------TTGACCAA-ATTAGATGTCCGTAGTGCCCCTGATGTTCCGTGATTGGTGGGATGAGCTCGACTT	Size	Hit Count	Total Norm	Total
No Reads

droFic1

GCCGCGAATCGAAAAAGAC-ACGCGAATC--------------------GAG------A-------GATCGGAA--AAAATATTAAAT--A----AACC--AACAAGGTACGAAG---AAGGATA--TATCCAAA-------------------------TATA--------------------------GAGA--AAATA--ATCCAACAAGT-----------------------GAAATTATAAGTGCA------------------------------------------------A-TAATTAGTG------------AAGTGTTTGGCTCACTA-TCG----TCTCGTTTT------TTGACCAA-ATTAGATGTCCGTAGTGCCCCTGATGTTCCGTGACTGGTGGGATGAGCTCGATTT	Size	Hit Count	Total Norm	Total
No Reads

droKik1

GCGGCGAATAGAAAACCAC-ACGCGAATC--------------------GTA------C-------GATCG--------------AAA-AG----ATAT-AGCCAAGGTACGCAA---AAGGATACAAAGCTA-----------------------------G-------------------------------------------------A------------------------AGGACTACAAGTGC-----------------------------------------------------------C------------AAGTGATTAGCTT-------G----ATTATTTCC------TTGATCAAAACCAGATGTCCGTAGTGCCCCTGATGTTCCGTGATTGGTGGGATGAGCTTGACTT	Size	Hit Count	Total Norm	Total
No Reads

droAna3

GACGCGAATCGAAAAAGAC-ACGCGAATC--------------------GTA------A-------GATCGGAACT-AAAT---A-AT-TA----ACCAAAAAAAAGGTACGA------AGGATA--CACCAAGT-------------------------TGTA--------------------------AAGC--ATATA--T----AAAAG------------------------TGGAATATCTGTGCA------------------------------------------------ACTGATTGGTG------------ACGTGATTAGCTCACAA-TCG----TCTCGTTTT------TTGACCAA-ACTAGATGTCCGTAGTGCCCCTGATGTTCCGTGATTGGTGGGATGAGCTCGATTT	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
........................................................................................................................................................................................................................................................................................................................................................................................GATGTCCGTAGTGCCCCTGAT..............................	21	1	1.00	1	0	1	0	0	0	0
..................C-ACGCGAATC--------------------GTA------A-------GATCGG...................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0
........................................................................................................................................................................................................A--T----AAAAG------------------------TGGAATATCTGTGCA------------------------------------------------AC.............................................................................................................................	24	1	1.00	1	0	1	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................GATTAGCTCACAA-TCG----TCTCGTT........................................................................	23	1	1.00	1	0	0	1	0	0	0
.........................................................................................................AGGTACGA------AGGATA--CACCAAGT-------------------------T..........................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................TCCGTGATTGGTGGGATGAGCTCGAT..	26	1	1.00	1	0	0	0	0	1	0
.............................................................................................................ACGA------AGGATA--CACCAAGT-------------------------...........................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0
..........GAAAAAGAC-ACGCGAATC--------------------GTA------A-------GAT......................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................TGCCCCTGATGTTCCGTGG.....................	19	1	1.00	1	1	0	0	0	0	0
...........................................................................................................GTACGA------AGGATA--CACCAAGT-------------------------T..........................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................GTTCCGTGATTGGTGGGAT...........	19	1	1.00	1	0	1	0	0	0	0
.........................................................................ACT-AAAT---A-AT-TA----ACCAAAAAAAAGGT..............................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0
........................GAATC--------------------GTA------A-------GATCGGAACT-..............................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0
.........CGAAAAAGAC-ACGCGAATC--------------------GTA------A-------GATC.....................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0
.......ATCGAAAAAGAC-ACGCGAATC--------------------..........................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................GTTTT------TTGACCAA-ACTAGATGTCC............................................	24	1	1.00	1	0	1	0	0	0	0

droBip1

ACCGCGAATCGAAAAAGAC-ACGCGAATC--------------------GTA------A-------GATCGGAATT-AAAT---A-AT-TA----ACCA--ATAAAGGTACGAATC--AAGGATA--CTTCAAGT-------------------------TAAA--------------------------AAGCGAATATATAC-----TAAG------------------------TGGAATTACTGTGCA------------------------------------------------ACTAACTGGTG------------ACGTGATTAGCTCACAA-TCG----TCTTGTTTT------TTGACCAA-ACTAGATGTCCGTAGTGCCCCTGATGTTCCGTGATTGGTGGGATGAGCTCGACTT	Size	Hit Count	Total Norm	Total
No Reads

dp5

GCGGCGAATCAAGAAAGATCGGGA-ATAC----------------------------------------G-------AAAT---ATATAAA--AGA----ATCAAAGGTACAAATCG-GAGGATA--TATA---------------------------------------------------------------------------------G------------------------AGGACTATTTGC----------------------------------------------------------------------------GCCATTAGCTCACCGTTCG----TATCGTTTCTCCATCTCCATCAA-CGTAGATGTCCGTTGTGCCCCTAATGTTCCGCGACTGGTGGGATGAGATTGACTT	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
............................................................................................................................................................................................................................................................................................................................................................TATCGTTTCTCCATCTCCATC..........................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................TTGTGCCCCTAATGTTCCG........................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........AAGAAAGATCGGGA-ATAC----------------------------------------G-------AAAT---.......................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................GTTCCGCGACTGGTGGGATGA.........	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................TATTTGC----------------------------------------------------------------------------GCCATTAGCTCACCGTTC....................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................AAAGGTACAAATCG-GAGGATA--TAT.........................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0

droPer2

GCGGCGAATCAAGAAAGATCGGGA-ATAC----------------------------------------G-------AAAT---ATATAAA--AGA----ATCAAAGGTACAAATCG-GAGGATA--TATA---------------------------------------------------------------------------------G------------------------AGGACTATTTGC----------------------------------------------------------------------------GCCATTAGCTCACCGTTCG----TATCGTTTCTCCATCTCCATCAA-CGTAGATGTCCGTTGTGCCCCTAATGTTCCGCGACTGGTGGGATGAGATTGACTT	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
..................................................................................................................................................................................................................................................................................................................................................................................................................GCGACTGGTGGGATGAGAT......	19	1	2.00	2	0	0	0	0	0	2
..........................................................................................A--AGA----ATCAAAGGTACAAATC.......................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	2	0	0	0	0	0
.CGGCGAATCAAGAAAGAT........................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0	0
............................................................................................................................A--TATA---------------------------------------------------------------------------------G------------------------AGGACTATTTGC----------------------------------------------------------------------------......................................................................................................	18	1	1.00	1	1	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................AATGTTCCGCGACTGGTGGGA............	21	1	1.00	1	0	1	0	0	0	0
..........................TAC----------------------------------------G-------AAAT---ATATAAA--AGA----ATCAAAGGTA.............................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0
..............AAGATCGGGA-ATAC----------------------------------------G-------AAAA---.......................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1
....................................................................................................................................................................................................................................................................................................................................................................................................................GACTGGTGGGATGAGATTGAC..	21	1	1.00	1	0	0	0	0	0	1

droWil2

AACACGAATAGAGAAAGAC-GTGTGCGTG--------------------TGG------A-------GACC-------AGCT---GAATTAGGATAA----ACCAAAGGTACGAGACG-AAGGATT--AACAAGGC---------------------------------------------------------T--------------------------------------------CGGTTATAGTGT-------------------------------------------------------------G------------AA---ATTTACTGGTTT-TCAATTGGCTCTGTGT------T-----TA-CGTAGATGTCTGTAGTGCCTCTAATGTTCCGCGACTGGTGGGATGAACTCGATTT	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
....................................................................................................................G-AAGGATT--AACAAGGC---------------------------------------------------------T--------------------------------------------C.............................................................................................................................................................................................	18	1	3.00	3	2	0	0	1	0
...ACGAATAGAGAAAGAC-GTGTGC.................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	2.00	2	0	0	1	0	1
.....GAATAGAGAAAGAC-GTGTGC.................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0
......AATAGAGAAAGAC-GTGTGCGTG--------------------T.........................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0
................GAC-GTGTGCGTG--------------------TGG------A-------GACC-------..............................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0
..CACGAATAGAGAAAGAC-G......................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0
...................................................................................................................CG-AAGGATT--AACAAGGC---------------------------------------------------------T--------------------------------------------CG............................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0
....CGAATAGAGAAAGAC-GTGTGCG................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0
.......ATAGAGAAAGAC-GTGTGCGTG--------------------TGG------A-------.........................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	1	0
.................................................................................................................GACG-AAGGATT--AACAAGGC---------------------------------------------------------T--------------------------------------------CGGTT.........................................................................................................................................................................................	25	1	1.00	1	0	0	0	1	0
.......................................................................................................................AGGATT--AACAAGGC---------------------------------------------------------T--------------------------------------------CGGTTA........................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0
..................................................................................................................................................................................................................................................................................................................................................TT-TCAATTGGCTCTGTGT------T-----TA-CGTA...................................................	25	1	1.00	1	0	1	0	0	0
...ACGAATAGAGAAAGAC-GTGTGCGTG--------------------T.........................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0
...............AGAC-GTGTGCGTG--------------------TGG------A-------GA.......................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0
.............AAAGAC-GTGTGCGTG--------------------TGG------A-------GA.......................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1
.........................................................................................................AGGTACGAGACG-AAGGAT...............................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	1
...................................................................................................................................................................................................................................................................................................................................................................................................................CGACTGGTGGGATGAACTCGAT..	22	1	1.00	1	0	0	1	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................CTAATGTTCCGCGACTGGTGG..............	21	1	1.00	1	0	1	0	0	0
............GAAAGAC-GTGTGCGTG--------------------TGG------A-------.........................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0
.................................................................................................................................................................................................................................................................................................................................................................GTGT------T-----TA-CGTAGATGTCTGTAGTGCCT...................................	27	1	1.00	1	0	1	0	0	0
....CGAATAGAGAAAGAC-GTGTG..................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0
....CGAATAGAGAAAGAC-GTGTGC.................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0
.........AGAGAAAGAC-GTGTGCGTG--------------------..........................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0
.............AAAGAC-GTGTGCGTG--------------------TGG------A-------GAC......................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0
....CGAATAGAGAAAGAC-GTGTGCGTG--------------------..........................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0
.................AC-GTGTGCGTG--------------------TGG------A-------GAC......................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	1
..............................................................................GCT---GAATTAGGATAA----ACCA...................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0
................................................................................................................................ACAAGGC---------------------------------------------------------T--------------------------------------------CGGTTATAGTG...................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0
........................................................................................................................................................................................................................................................................................................................................................................................................CTAATGTTCCGCGACTGGTGGG.............	22	1	1.00	1	0	0	0	1	0
..................................................................GACC-------AGCT---GAATTAGGATA............................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0

droVir3

AACGCGAAACGGAATATAC-AAGAAAATAAATTCAGTTGCTTTTTGTCGGTGACTAAT----------CC-------AC-----GAAT--A----ATCC--ACAAAGGTACAAGGCA-CAGAATA--T--TAAAA-------------------------TGTATAAATATTTATAAAGAAAA--------TTCG-------------AAAAAAGAAAAAACGATCGTAAACATTTTCGACTGATCCGTTCG------------------------------------------------ACTAACTGGTGATGCGCATTAAT-TGCCATTAGCTCT--G-TCT-A--TCTCTTCT--GT-TCTCCTGTCA-CGTAGATGTCCGTTGTGCCTCTAATGTTCCGCGACTGGTGGGATGAGCTTGAATT	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
..............................ATTCAGTTGCTTTTTGTCGGTGA......................................................................................................................................................................................................................................................................................................................................................................................	23	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................CCGCGACTGGTGGGATGAGC.......	20	1	2.00	2	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................CT-A--TCTCTTCT--GT-TCTCCTGTC.........................................................	22	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2
..........................................................................................................................................................................................................................................................................................................................................TAGCTCT--G-TCT-A--TCTCTTCT--.....................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................CTTTTTGTCGGTGACTAAT----------C......................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................ATTTTCGACTGATCCGTTCG------------------------------------------------ACT............................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....GAAACGGAATATAC-AAGAAAATAAATT..........................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................CTGGTGGGATGAGCTTGAA..	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................AGATGTCCGTTGTGCCTC..................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................AGTTGCTTTTTGTCGGTGACT....................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................TGTCCGTTGTGCCTCTAATGTTCC.........................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................CTGTCA-CGTAGATGTCCGTTGTGCCT...................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................TTCCGCGACTGGTGGGATGAGC.......	22	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
AACGCGAAACGGAATATAC-AAGAA..................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................GTTCCGCGACTGGTGGGATGAGCT......	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................CTGGTGGGATGAGCTTGA...	18	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................CAGTTGCTTTTTGTCGGTGACT....................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

ACCGCGAATCGGAAAACAC-GAAAAATTC---------------------TA------CATTCTGTGATT-------AATT---GGATT------ATTT-AGCAAAGGTACGAAA---GGTAGCC--AAA----TTATACAAACAAAAAAAAGTTTAATATAAA--------------------------ATGAAAATATATAT----AAAAA-----------T-TCAAACGTTT-CGGATTA-------------------------------------------------------------T-AGAT---------AAC-TGCCATTAGCTTGTTA-TCT-TCTTCTCA-TT---------CTTC-A-AATAGATGTCCGTTGTTCCTCTAATGTTCCGTGATTGGTGGGATGAGCTTGACTT	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
............................................................................................................................................................................................................................................................................................................................................................................................................TGTTCCGTGATTGGTGGGATGAGCT......	25	1	9.00	9	2	0	0	0	0	7
............................................................................................................................................................................................................................................................................................................................................................................................................TGTTCCGTGATTGGTGGGA............	19	1	3.00	3	1	0	0	0	0	2
............................................................................................................................................................................................................................................................................................................................................................................................................TGTTCCGTGATTGGTGGGATGAGC.......	24	1	3.00	3	1	0	0	0	0	2
.............................................................................................................................................................................................................................................................................................................................................................................................................GTTCCGTGATTGGTGGGATGAGCT......	24	1	3.00	3	2	0	0	0	0	1
..........................................................................................................................................................................................................................................................................................................................................................................................................AATGTTCCGTGATTGGTGGGATGAGCT......	27	1	3.00	3	0	0	0	0	0	3
....................................................................................................................................................................................................................................................................................................................................................................................................................GATTGGTGGGATGAGCTTG....	19	1	3.00	3	1	0	0	0	0	2
..CGCGAATCGGAAAACAC-GAAAAAT................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	2.00	2	1	0	0	1	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................CGTGATTGGTGGGATGAGCT......	20	1	2.00	2	2	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................TTCCGTGATTGGTGGGATGAGCT......	23	1	2.00	2	0	0	0	0	0	2
....................................................................................................................................................................................................................................................................................................................................................................................................................GATTGGTGGGATGAGCTTGACT.	22	1	2.00	2	0	0	0	0	0	2
.............................................................................................................................................................................................................................................................................................................................................................................................................GTTCCGTGATTGGTGGGATGA.........	21	1	2.00	2	0	0	0	0	0	2
...........................................................................................................................................................................................................................................................................................................................................................................................................ATGTTCCGTGATTGGTGGGATG..........	22	1	1.00	1	1	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................GGTGGGATGAGCTTGACT.	18	1	1.00	1	0	0	0	0	0	1
..................................................................................................................................................................................................................................................................................................................................................................................................................GTGATTGGTGGGATGAGCTTGACT.	24	1	1.00	1	0	0	0	0	0	1
...........................................................ATTCTGTGATT-------AATT---GGATT------ATT.........................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
ACCGCGAATCGGAAAACAC-GAAA...................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................GATGTCCGTTGTTCCTCTAATG.............................	22	1	1.00	1	1	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................CTCA-TT---------CTTC-A-AATAGATGTCCGTT.........................................	25	1	1.00	1	1	0	0	0	0	0
............................................................TTCTGTGATT-------AATT---GGATT------ATTT-AG.....................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
............................C---------------------TA------CATTCTGTGATT-------AATT---GGATT------............................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
..................................................................................................................................................................................................................................................TA-------------------------------------------------------------T-AGAT---------AAC-TGCCATTAGCTTGTTA-TC....................................................................................	28	1	1.00	1	1	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................GATTGGTGGGATGAGCTTGA...	20	1	1.00	1	0	0	0	0	0	1
.........................................................................................................................................................................................................................................................................................................................................................................................................TAATGTTCCGTGATTGGTGGG.............	21	1	1.00	1	1	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................TGATTGGTGGGATGAGCTTGA...	21	1	1.00	1	0	0	0	0	0	1
............................................................................................................................................................................................................................................................................................................................................................................................................TGTTCCGTGATTGGTGGGATGAGCTTG....	27	1	1.00	1	0	0	0	0	0	1
..............................................................................................................................................................................................................................................................................................................................................................................................................TTCCGTGATTGGTGGGATGAGCTT.....	24	1	1.00	1	0	0	0	0	0	1
............................................................................................................................................................................................................................................................................................................................................................................................................TGTTCCGTGATTGGTGGGAT...........	20	1	1.00	1	0	0	0	0	0	1
........................................................................................................................................................................................................................................................................................................................................................................................................CTAATGTTCCGTGATTGGTGG..............	21	1	1.00	1	0	0	0	0	0	1
.............................................................................................................................................................................................................................................................................................................................................................................................................GTTCCGTGATTGGTGGGATGAGC.......	23	1	1.00	1	0	0	0	0	0	1
............................C---------------------TA------CATTCTGTGATT-------AATT---GGATT------AT..........................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................TTCCGTGATTGGTGGGATG..........	19	1	1.00	1	1	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................GATTGGTGGGATGAGCTTGAC..	21	1	1.00	1	0	0	0	0	0	1
.......................................................................................................................................................................................................................................................................................................................................................................................................TCTAATGTTCCGTGATTGGTGGGAT...........	25	1	1.00	1	1	0	0	0	0	0
...........................TC---------------------TA------CATTCTGTGATT-------AATT---GGATT------ATT.........................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................GTGATTGGTGGGATGAGCTA.....	20	1	1.00	1	0	0	0	0	0	1
...............................................................................................................................................................................................................................................................................................................................................................................................................TCCGTGATTGGTGGGATGAGCT......	22	1	1.00	1	0	0	0	0	0	1
....................................................................................................................................................................................................................................................................................................................................................................................AATAGATGTCCGTTGTTCCTCTAATG.............................	26	1	1.00	1	1	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................CTAATGTTCCGTGATTGGTGGGATGAGC.......	28	1	1.00	1	0	0	0	0	0	1
...........................................................................................................................................................................................................................................................................................................................................................................................................ATGTTCCGTGATTGGTGGGATGAGC.......	25	1	1.00	1	0	0	0	0	0	1
..................................................................................................................................................................................................................................................................................................................................................................................................................GTGATTGGTGGGATGAGCTTGACTT	25	1	1.00	1	0	0	0	0	0	1
...................................................................ATT-------AATT---GGATT------ATTT-AGC....................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................AATGTTCCGTGATTGGTGGGATGAG........	25	1	1.00	1	0	0	0	0	0	1
...........................................................................................................................................................................................................................................................................................................................................AGCTTGTTA-TCT-TCTTCTCA-TT---------..............................................................	22	1	1.00	1	1	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................ATGTTCCGTGATTGGTGGGATGAGCT......	26	1	1.00	1	0	0	0	0	0	1
..................................................................................................................................................................................................................................................................................................................................................................................................................GTGATTGGTGGGATGAGCTTGAC..	23	1	1.00	1	0	0	0	0	0	1
.....................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGTGGGATGAGCTTGACT.	21	1	1.00	1	1	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................GTTCCTCTAATGTTCCGTGATT...................	22	1	1.00	1	1	0	0	0	0	0

droGri2

GCCGCGAAACGGAATAGAC-GCAAAAAAA--------------------GCGAGAAAT----------TCA-----AAAGT---G--ATCA----ATTA--GCAAAGGTACATGG---AATGACA--AGAATAAT---AC---------AA-------------------------------------------------A--T----AAAAA------------------------CATATATCAGATACACTAGTTGTGAAGTGATTGGAGTGATGTGATTTAATTTGATTTCATTTGACTAACCGAAGATGTGCATTAAC-TGCCATTAGCTT--TA-TCT----TCTCTTCTT-----CTCACGCCA-CGTAGATGTCCGTAGTTCCTCTAATGTTCCGCGACTGGTGGGATGAGCTCGACTT	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

dsi_15752

2r:20081942-20082034 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-11.8	-11.1	-11.0