ID:

dsi_15733

 Coordinate:

2r:12848440-12848658 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-17.1 -16.9 -16.8

Flybase annnotation

CDS [2r_12848110_12848392_+]; three_prime_UTR [2r_12848393_12848533_+]; exon [2r_12848110_12848533_+]

No Repeatable elements found

mature
star
  1. dsi_15733  2r:12848598-12848612 +
  2. 3r:12895227-12895241 +

Sense Strand Reads

################################################################################################################################################-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
TAATCAATTGATATTCTAACTGTGGATGTAAAAGTAATCAGGCATTTCAGGTATAGCGTAACCGTAGATAATAAAATAGATATGTTAAAATGACATGCATTACTTATTTAGAGATAAATACACTGTATACACTGTATAACCGTGACTAGGAATTTTTAACAGTGGTGGGGGGAGCTTAAATTGTGGGCCACTTGAGATTTTTAATCTTATCATTGCGTTTTTTCAAATGTTATTTTTATAACTGTTGCTTTTGTTTTGATCGCACAAAGCCACAGCTGATTGTGGTTTTGCTGAACTGCCAACCTGTTATAGTTCTGCG
*****************************************************************************************************************.......(((.((((((...)))).)).)))...............((((((((((((((((((((...(((...)))))))).))))...)))))))))))........************************************************************************************************ 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 M053
female body
 M023
head
 SRR553486
Makindu_3 day-old ovaries
 M025
embryo
 SRR902009
testis
 GSM343915
embryo
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 SRR902008
ovaries
 SRR618934
dsim w501 ovaries
 SRR1275487
Male larvae		 SRR553485
Chicharo_3 day-old ovaries
.....AATTGATATTCTAACTGTGGAA.................................................................................................................................................................................................................................................................................................... 22 1 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0 0
....................................................................................TTAAGATGACATGCATTACTT...................................................................................................................................................................................................................... 21 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
.................................................................................................................ATAAATACACTGTATACACTG......................................................................................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................ATCATTGCGTTTTTT................................................................................................ 15 0 2 1.00 2 0 0 0 0 0 0 0 2 0 0 0 0 0
................TAACTGTGGATGTAAAAGTAATCAG...................................................................................................................................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
............................TAAAAGTAATCAGGCATTTCA.............................................................................................................................................................................................................................................................................. 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
.......................................................................................................................................................................................TGGGCCACTTGAGATTTTTAAA.................................................................................................................. 22 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
...........................................................................................GACATGCATTACTTATTTAGAGATA........................................................................................................................................................................................................... 25 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0
.....................................................................................................................ATACACTGTATACACTGT........................................................................................................................................................................................ 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
................TAACTGTGGATGTAAAAGT............................................................................................................................................................................................................................................................................................ 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
........TGATATTCTAACTGTGGAT.................................................................................................................................................................................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
......ATTGATATTCTAACTGTGGATGTAAAA.............................................................................................................................................................................................................................................................................................. 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...................................AATCAGGCATTTCAGGTATAGCGT.................................................................................................................................................................................................................................................................... 24 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0
..........................................................................AATAGATATGTTAAAATGACA................................................................................................................................................................................................................................ 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................................................TGCTGAACTGCCAACCTGTTATAGTT..... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................TATAATTGTTGCTTTTGTTTTAA............................................................ 23 2 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0
....CAATTGATATTCTAACTGTGGAT.................................................................................................................................................................................................................................................................................................... 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................ATAAATACACTGTATACACT.......................................................................................................................................................................................... 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.....................................TCAGGCATTTCAGGTATAGCGC.................................................................................................................................................................................................................................................................... 22 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................CACTGTATACACTGTATAACC.................................................................................................................................................................................. 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................................TTAGAGATAAATACACTGTATACACT.......................................................................................................................................................................................... 26 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
...........................................................................................................TTAGAGATAAATACACTGTATACACTG......................................................................................................................................................................................... 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................AACCGTGACTAGGAATTTTTAACAGT............................................................................................................................................................ 26 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
TAATCAATTGATATTCTAACTGTGGAT.................................................................................................................................................................................................................................................................................................... 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................ATTGTGGGCCACTTGAGATTT....................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
........................................................CGTAACCGTAGATAATAAAATAGAT.............................................................................................................................................................................................................................................. 25 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
.......................................................................................................................ACACTGTATACACTGTATAACCGT................................................................................................................................................................................ 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................TTTTTAACAGTGGTGGGGGGA.................................................................................................................................................. 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................TGGGGGGAGCTTAAATTGTGG..................................................................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................AACAGATTGTAGTTTTGCTGA......................... 21 3 4 0.25 1 0 0 0 0 0 0 0 0 1 0 0 0 0
...............................................................................................TGCATTACTGATTTTGAAATAA.......................................................................................................................................................................................................... 22 3 5 0.20 1 0 0 0 0 0 0 0 0 0 1 0 0 0
....................................................................................................................................................................GTGGGGGGTGCTTGTATTGTG...................................................................................................................................... 21 3 5 0.20 1 0 0 0 0 0 0 1 0 0 0 0 0 0
.........................................................................AAATAGGTATGTTAAAA..................................................................................................................................................................................................................................... 17 1 6 0.17 1 0 0 0 0 0 0 0 0 1 0 0 0 0
............................................................................................................................................................................................................................................................TTTTTGATCGCACAAA................................................... 16 1 6 0.17 1 0 0 0 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................AATCATTGCGTTTTTT................................................................................................ 16 1 12 0.17 2 0 0 0 0 0 0 0 2 0 0 0 0 0
.........................................GAATTCCAGGTATAGCG..................................................................................................................................................................................................................................................................... 17 2 7 0.14 1 0 0 0 0 0 0 0 0 0 0 1 0 0
...........................................................................................................................................................................................................................................................TATTTTGATCTCACAAGGCC................................................ 20 3 8 0.13 1 0 0 0 0 1 0 0 0 0 0 0 0 0
....................................................................................................................AATACACTGTAGTCACTG......................................................................................................................................................................................... 18 2 9 0.11 1 1 0 0 0 0 0 0 0 0 0 0 0 0
........................GATGTTAAAGTCATCCGGCA................................................................................................................................................................................................................................................................................... 20 3 9 0.11 1 0 0 0 0 0 0 0 0 0 0 0 1 0
........................................................................................................TATTTAGGGAAAAAGACACT................................................................................................................................................................................................... 20 3 11 0.09 1 0 0 0 0 0 0 0 0 1 0 0 0 0
..............................................................................................................................................................................................CTTGAGACTGTTAATCT................................................................................................................ 17 2 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0
..........ATAGTCTAACTGTGGAGC................................................................................................................................................................................................................................................................................................... 18 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

ATTAGTTAACTATAAGATTGACACCTACATTTTCATTAGTCCGTAAAGTCCATATCGCATTGGCATCTATTATTTTATCTATACAATTTTACTGTACGTAATGAATAAATCTCTATTTATGTGACATATGTGACATATTGGCACTGATCCTTAAAAATTGTCACCACCCCCCTCGAATTTAACACCCGGTGAACTCTAAAAATTAGAATAGTAACGCAAAAAAGTTTACAATAAAAATATTGACAACGAAAACAAAACTAGCGTGTTTCGGTGTCGACTAACACCAAAACGACTTGACGGTTGGACAATATCAAGACGC
************************************************************************************************.......(((.((((((...)))).)).)))...............((((((((((((((((((((...(((...)))))))).))))...)))))))))))........***************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 SRR618934
dsim w501 ovaries
 M023
head
 SRR902009
testis
 SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 O001
Testis
 M025
embryo
.........CTATAAGATTGACACCTAC................................................................................................................................................................................................................................................................................................... 19 0 1 2.00 2 1 0 1 0 0 0 0 0
..............................................................................................................................................................................................................................................................................GTGTCGACTAACACCAA................................ 17 0 1 1.00 1 0 1 0 0 0 0 0 0
............................ATTTTCATTAGTCCGTAAAGT.............................................................................................................................................................................................................................................................................. 21 0 1 1.00 1 0 0 0 1 0 0 0 0
............................................................................................................................................GCACTGATCCTTAAAAGTTGTC............................................................................................................................................................. 22 1 1 1.00 1 1 0 0 0 0 0 0 0
............................TTTTTCACTAGTCCGTAAGGT.............................................................................................................................................................................................................................................................................. 21 3 2 0.50 1 0 0 0 0 1 0 0 0
..........................................................................................................................................................................................................................................................AGCAAAACTCGCCTGTTTCGG................................................ 21 3 2 0.50 1 0 0 0 0 0 1 0 0
....................................TAGTCCGTAAAGACCAGAT........................................................................................................................................................................................................................................................................ 19 2 4 0.25 1 0 0 0 0 1 0 0 0
.................................................................................................GGAATAAATAAATCTCTAT........................................................................................................................................................................................................... 19 2 7 0.14 1 0 0 0 0 0 0 1 0
...............................................................CATCGATTATTTTATC................................................................................................................................................................................................................................................ 16 1 9 0.11 1 0 1 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................GCGTGTGTCGGTGTCCAC......................................... 18 2 17 0.06 1 0 0 0 0 0 0 0 1
.......................................................................................................................................................................................................................................................................TGATTGGGTGTCGACTAAT..................................... 19 3 19 0.05 1 0 0 0 0 0 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2r:12848390-12848708 + dsi_15733 TAATCAATT---------------GA-------TATTCTAACTGTGGATGTAAAAGTAATCAGGCATTTCAGGTATAGCGTAAC-CGT------------------------------AGATAATAAAATAGATATGTTA-------AAATGACATGCATTACTTATTTAGA----------------------GATAA-----A--TACACTGTATACACTGTATAACCGT------------------------GACTAGGA-ATTTTTAACA---GTGGTGGGGGGAG-C---------------------------------TT--------------------------------AAATTGTGGGCCACTTGAGA----------TTTTTAATCTTATCATTG-----CGT--TT-TTTC-AAATG--TTATTT-TTATAACTGT---TGCTTTTGTTTTGATCGCACAAAGCCAC----------AGC--TGATTGTGGTTTTGCTGAACT--------------------GCCAACCTGTTA---TAGTT-CT-GCG
droSec2 scaffold_1:9678085-9678394 + TAATCAATT---------------GA-------TATTCTAACCGTGGATGTAAAAGTAATCAGGCATTTCAGGTATAGCGTAAC-CGT------------------------------AGATAATAAAGTAGATATGTCA-------AAATGACATGCATTACTTATTTAGA----------------------GATTA-----A--TACAC---------TGTATAACCGT------------------------GACTAGGA-ATTTTTAACA---GTTGTGCGGGGAG-C---------------------------------TT--------------------------------AAATTGTGGGCCACTTGAGA----------TTTTTAATCTTATCATTG-----CGT--TT-TTTC-AAATG--TTATTT-TTATAACTTT---TGCTTTTGTTTTGATCGCACAAAGCCAC----------AGC--TGATTGTGTTTTTGCTGAACT--------------------GCCAACCTGTTA---TAGTT-CT-GCG
dm3 chr2R:12178713-12179015 + TAATCAATT---------------GA-------TAGCCTAA-------TGTAAAAGTATTCAGGCATTTCAGGTATAGCGTAAC-TGT------------------------------AGATAATAAAATAGAT--GTTA-------AAGTGACATGCATTACCTATTTAGA----------------------GTTTA-----A--TACAC---------TGTTTAACCGT------------------------GACTAGGA-ATTTTTAACA---GTGGTGGGGGAAT-C---------------------------------GT--------------------------------AAATTGTGGGCTACTTAAGA----------TTTATAATCTTATCATTG-----CGTT-TT-TTTC-AAATGT-TTATTT-TTATAACTGT---TGCTTTTGTTTTGATCGCACAACGCCGC----------AGC--TGATTGTGTTTTTGCTGAACT--------------------GCCAACCTGTTG---TAGTT-CT-GCG
droEre2 scaffold_4845:13683209-13683522 - TAATTATTC---------------GAAATGGATTATTC-AACCGTGGATATAAAAGTAATCAGACATTTCAGGTAGA---TAAC-GGT------------------------------AGATAATAAAATAGATATGGTA-------AAATGACATGCATTACTTATTTAGA----------------------GTTTA-----A--TATGG---------TGTATAACCGT------------------------GACTAGGA-ATTTTTAACG---GTGATTGAGGGAG-T--------GTAACACATTTCAT------------------------------------------------ATGTGGGCCACTTAAGA----------TTATTAATCTTATCTCT-----------TT-TCTG-AAATA--TTATTT-TTCTAGCTGT---TGCTTTTGTTTTGATCGCAGAACGCCAC----------AGC--TGATTGT----TTGCTGAACT--------------------GCCAACCTGTTA---TAGTT-CT-GCG
droYak3 2R:16807174-16807451 - TAATTATTC---------------GA-------T-----------------------------TCATTTC----ATAACGTAAC-GAT------------------------------AACTAATAAAACAAATATGCTA-------GTATGACACGCATTACTT----GGA----------------------GATTA-----A--TCTAG---------TGTTTAACCAT------------------------GACTAGGA-ATTTTAAGCG---GTGGTTCGGGGAG-C--------GTAACACATT-CA------------------------------------------------ATTTTAGGCTACTTGAGA----------TTATTAATCTTATCATTG-----CAT--T--TTTC-AAATG--TTGTTT-TTTTAGCTGT---TGCTTTTGTTTTGATCGCAGAACGCCAC----------AGC--TGATTATGT--TTGCTGAACT--------------------GCCAACCTGTTA---TAGTT-CT-GCG
droEug1 scf7180000409672:2998068-2998387 - TAATCATTTCC---------------------------------------------------------------AAAGTGCAATCGGT------------------------------AGATAATAAAATAAATCA---A-------ACATGACCTGCATTATATTTATTGT----------------------GTTAA-----AAATGGA-----------------------CTAA-AAATCGATTCTCGGCATGACTACAA-ATTTTTAATG---GTGATTGGTCAAT-CG--------------------ATTTAAGAAGGCGTATAGCACCTGAGCATTCTATTCTACGGCCTTTAT---CAATTTCAATTCAAA-----------ATACAATCTTATCAATA-----TGTATTT-TTTTTAAGTG--TTCT-A-TTATCAGCAC---TGTTATTGTTTTGATCGCTAGCTGCAAC----------AGC--TGACTGT-----AGTG------------------CGGTAATGCCAACTTGTTA---TCAAAACAGACG
droBia1 scf7180000301506:2776300-2776603 - TAATCTTTTCC---------------------------------------------------------------ATTTCGTAGA-TTTTGCT-AAAATA-AAACTAAT--------------------------CA---GATACAGTAAATGACCAGCATTATTTATAATCG----------------------TTGGG--GG--GAAAGA-----------------------CCAAAAAATTGATTTTAGTCATGACTACAA-ACTTTGAATG---CTGATTGGAG-AGTTGTTTGATTCCTGTGTATTTCCA------------------------------------------------AATTGGGCCACTTAAGGGGTGTATTAGTGAATAATCTTATCATAT-----CAATATA-TTTCGAAATA-----T-C-TTATCAGCAT---------TGTTTGGAGTGCCAGTTAAAAC----------AGC--TGATTGT-----GGCTGGGCT--------------------GCCAGCCCGTTT---TCATACCA-ACG
droTak1 scf7180000416016:761738-762015 + TAAAGATTTCC---------------------------------------------------------------AAAGCGTAAC-TGTAGAT-AAAAGA-AAACTAAT--------------------------CA---AACACTTTAAATGACCTGCATTATTTATGTGGT----------------------GTTGAG-GGAAAAAAGA-----------------------CTAA-AAATCGATTTTAGCCATGACTACAACATTTTTAGTG---GTGATTGGGG-AG--------------TACACTCCAA-----------------------------------------------AATTTAGGCCACTTAAAG----------CGTACAATCTTATCAGTT-----CGAT-TT-TTTCAAAATG--TTTT-C-TTATCAGCAA---------TGTTTTGTACGCCGGCCGCCAC----------AGC--TGATTGC-----GGCGGAGCT--------------------GCCAACCTGTTT---TGG---------
droEle1 scf7180000491027:535976-536259 - TAATCATATCC---------------------------------------------------------------CTAACGTAAT-TGTAG---AGATTA-AAACTAAT--------------------------CA---GACATTTTAAATAGCCTGCAATAATTATTGGGT----------------------GCGAAG--C--GAAAGA-----------------------CTGC-AAATCGACTGTAGTCTTAGCTACAA-ACTTGTAATG---GTGATTGGGCGAA-T--------T------------------------GT--------------------------------AT---ATATTTCACTAAACA----------CTTTCAATCTTATCAAAT-----CGTCTTT-TTTGGAATTG--TTTTCG-TTATCGGCAT---TGTTTTTGTTTTGATCGCGGGCTGCAAC----------AGC--TGATTGT-----GACGGAACT--------------------GCCAACCTATCTTTCGCATT-CC-GCA
droRho1 scf7180000769565:84991-85275 + TAATCTTATCC--------------G-------TATTC-------------------------------------------AAA-CGT------------------------------AAAGAATAAAACGAATTT---G-------TATTGACC----TTACTTATGTATG--TATATATGTTTTGGGT----GCGAGG--A--AAAAGA-----------------------TTAC-AAATCGACTGTGGTCATAACTAC-------CCAACGAAGTTGATGGAG--AG-G--------GTTATACATTCCAAATTTAG---------------------------------------------GAGGCGATT---------------TGTTCAATCTTATCATAC-----ACAT-TA-TTTC-AAATTTGTTTTCG-TTATCAGCAT-------TTTCTTTTGATCGCGGGCTGCAAC----------AGC--TGATTGT-----GGTGGAACT--------------------GCCAACCTGTTT---GCATT-CC-GCA
droFic1 scf7180000453851:335229-335449 + TAACTCTAA------------------------------------------------------------------------------------AAAGTA-AAACCGAT--------------------------TA---AACATTCTTAAATATTTGTACCATTTACTGGAT----------------------GATAAGCTA--CAAATA-----------------------CTGA-AAA---------------------------ATAATG---GTGATTGGGGGAA----------------------------------------------------------------------------------------------------GTTTAATCTTATCAAAT-----CGAATTG-TTTGGTAATG--CTACCG-TTATCAGCTTTTTTTGTTTTGTTTTTATCTCATTCTGCGAC----------AGC--TGATTAC-----AGGAGAGCT--------------------GCCAACCTGTGT---TGACA-CT-GTG
droKik1 scf7180000302470:530193-530418 + TGAAAAGTA---------------GA-------TA-----------------------------------------------------------AGAAA-----------------------------------TA---A----------------ACATTTCTT--------------------------------TG-----C--TTCGG---------TGCTTAACAATGACTAA-AAATCGATTGTAATCATTACGGCCC-ATTTTAATAG---GTAGCTGTAGGAA-G--------------------------------CGT--------------------------------A------------TTTTCGG---------TTGTTAAATCTTATCTGTT-----CGAT-TATTTGG-GA--A--TTTT-G-TTATCAGCTT---TGTTTTTGTTTTGAT------TTGGAAC----------AGC--TGATTGC-----GGCAGGACT--------------------GCCAACCCGTGT---TAGTT-TT-GAG
droAna3 scaffold_13266:15555047-15555051 + TAACC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBip1 scf7180000396567:49776-50023 + TAACATGATCA--------------A-------TA---------------------------------------------------------------AACAACA-------------------------------------------------ATACTTTACTTACCTGAAACCATACCAGTTTTTTGTTAGATTCCA-----A--AATA-----------------------ATGA-TA----------------------A-A-------------TTTTTGGGC-AA--------------TCCCTTTCCG-----------------------------------------------ATTATAGCCTATTTTATG---------GTGGTTAATCTAATCAAATCATTGAGT--TC-TCCA-AGAGA--TTACCTTTTATTACCTA---------TGCT---------TACCAAC-CCATCTGTTGCTGTTTTGATTGG----CGGCAGTGCTGCCACCTGGCGGGCAT-----------TGGTG---TAGAC-AT-GTT
dp5 3:3969739-3969825 - CATTTTGTTTTTTTTTTTATTTCC----------------------------------------------------------------TT--T---------------------------------------------T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G-ATATCAGTT------------------TCGCTCAACGAC-C----------AGC--TGTTTGT----CGGCGGTGCT--------------------GCCAACCTGTG----------CT-GTA
droPer2 scaffold_2:4153759-4153845 - CATTTTGTTTTTTTTTTTATTTCC----------------------------------------------------------------TT--T---------------------------------------------T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G-ATATCAGTT------------------TCGCTCAACGAC-C----------AGC--TGTTTGC----CGGTGGTGCT--------------------GCCAACCTGTG----------CT-GTA
droWil2 scf2_1100000004510:1884872-1884879 - TAATAAAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droVir3 scaffold_4724:4988-5082 - TAATAGCGT---------------GG-------AATTCGAA-------TAG-----------------------------------------------A-TAACAATTCATGAATTCTAGATAGAAAGATTGCCATT-GG-------CAATGACTTTTAATATCTATCTGTA----------------------TATCA-----A--TA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
TAATCAATT---------------GA-------TATTCTAACTGTGGATGTAAAAGTAATCAGGCATTTCAGGTATAGCGTAAC-CGT------------------------------AGATAATAAAATAGATATGTTA-------AAATGACATGCATTACTTATTTAGA----------------------GATAA-----A--TACACTGTATACACTGTATAACCGT------------------------GACTAGGA-ATTTTTAACA---GTGGTGGGGGGAG-C---------------------------------TT--------------------------------AAATTGTGGGCCACTTGAGA----------TTTTTAATCTTATCATTG-----CGT--TT-TTTC-AAATG--TTATTT-TTATAACTGT---TGCTTTTGTTTTGATCGCACAAAGCCAC----------AGC--TGATTGTGGTTTTGCTGAACT--------------------GCCAACCTGTTA---TAGTT-CT-GCGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.....AATT---------------GA-------TATTCTAACTGTGGAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.00220000000000000000
...................................................................................................................................................................................................ATAA-----A--TACACTGTATACACTG.....................................................................................................................................................................................................................................................................................................................................................2111.00110000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................ATCATTG-----CGT--TT-TTT............................................................................................................................................1521.00200000000020000000
......................................TAACTGTGGATGTAAAAGTAATCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00101000000000000000
..................................................TAAAAGTAATCAGGCATTTCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000000001000
..............................................................................................................................................................................................................................................................................................................................................................................TGGGCCACTTGAGA----------TTTTTAAA......................................................................................................................................................................2211.00100000000000001000
.......................................................................................................................................................GACATGCATTACTTATTTAGA----------------------GATA..............................................................................................................................................................................................................................................................................................................................................................................2511.00100000000000100000
............................................................................................................................................................................................................A--TACACTGTATACACTGT....................................................................................................................................................................................................................................................................................................................................................1811.00101000000000000000
......................................TAACTGTGGATGTAAAAGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100010000000000000
........T---------------GA-------TATTCTAACTGTGGAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00101000000000000000
......ATT---------------GA-------TATTCTAACTGTGGATGTAAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00101000000000000000
.........................................................AATCAGGCATTTCAGGTATAGCGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000000000100000
...............................................................................................................................AATAGATATGTTA-------AAATGACA.........................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000001000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTGAACT--------------------GCCAACCTGTTA---TAGTT-......2611.00100010000000000000
....CAATT---------------GA-------TATTCTAACTGTGGAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100010000000000000
...................................................................................................................................................................................................ATAA-----A--TACACTGTATACACT......................................................................................................................................................................................................................................................................................................................................................2011.00100010000000000000
...........................................................TCAGGCATTTCAGGTATAGCGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100010000000000000
.................................................................................................................................................................................................................CACTGTATACACTGTATAACC..............................................................................................................................................................................................................................................................................................................................................2111.00110000000000000000
.......................................................................................................................................................................TTAGA----------------------GATAA-----A--TACACTGTATACACT......................................................................................................................................................................................................................................................................................................................................................2611.00100100000000000000
.......................................................................................................................................................................TTAGA----------------------GATAA-----A--TACACTGTATACACTG.....................................................................................................................................................................................................................................................................................................................................................2711.00110000000000000000
..................................................................................................................................................................................................................................AACCGT------------------------GACTAGGA-ATTTTTAACA---GT............................................................................................................................................................................................................................................................................................2611.00100100000000000000
TAATCAATT---------------GA-------TATTCTAACTGTGGAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100010000000000000
..........................................................................................................................................................................................................................................................................................................................................................................ATTGTGGGCCACTTGAGA----------TTT...........................................................................................................................................................................2111.00101000000000000000
..............................................................................CGTAAC-CGT------------------------------AGATAATAAAATAGAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100100000000000000
................................................................................................................................................................................................................ACACTGTATACACTGTATAACCGT------------------------....................................................................................................................................................................................................................................................................................................................2411.00101000000000000000
..........................................................................................................................................................................................................................................................................TTTTTAACA---GTGGTGGGGGGA..................................................................................................................................................................................................................................................................................2111.00100000001000000000
..........................................................................................................................................................................................................................................................................................TGGGGGGAG-C---------------------------------TT--------------------------------AAATTGTGG...................................................................................................................................................................................................2111.00100000001000000000
droSec2
TAATCAATT---------------GA-------TATTCTAACCGTGGATGTAAAAGTAATCAGGCATTTCAGGTATAGCGTAAC-CGT------------------------------AGATAATAAAGTAGATATGTCA-------AAATGACATGCATTACTTATTTAGA----------------------GATTA-----A--TACAC---------TGTATAACCGT------------------------GACTAGGA-ATTTTTAACA---GTTGTGCGGGGAG-C---------------------------------TT--------------------------------AAATTGTGGGCCACTTGAGA----------TTTTTAATCTTATCATTG-----CGT--TT-TTTC-AAATG--TTATTT-TTATAACTTT---TGCTTTTGTTTTGATCGCACAAAGCCAC----------AGC--TGATTGTGTTTTTGCTGAACT--------------------GCCAACCTGTTA---TAGTT-CT-GCGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.................................................GTAAAAGTAATCAGGCATTTCAGGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2513.0030210
..............................................................GGCATTTCAGGTATAGCGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010010
............................................................................................................................................................................................................................................................................TTTAACA---GTTGTGCGGGGAG-................................................................................................................................................................................................................................................................................2011.0010001
......................................................................................GT------------------------------AGATAATAAAGTAGATAT............................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010010
.................................................................................................................................................................................................................CAC---------TGTATAACCGT------------------------GACTAGG.............................................................................................................................................................................................................................................................................................................2111.0010001
.......................................................GTAATCAGGCATTTCAGGTATAGCGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010010
.........................................................AATCAGGCATTTCAGGTATAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0011000
..........................................................................................................................................................................................................................................................................TTTTTAACA---GTTGTGCGGGGA..................................................................................................................................................................................................................................................................................2111.0010001
...................................................AAAAGTAATCAGGCATTTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010010
......................................................AGTAATCAGGCATTTCAGGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010010
........T---------------GA-------TATTCTAACCGTGGATGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010010
................................................TGTAAAAGTAATCAGGCATTTCAGGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010010
.................................................GTAAAAGTAATCAGGCATTTCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010010
...........................................GTGGATGTAAAAGTAATCAGGCAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010010
................................................................................................................................................................................................................................................................................ACA---GTTGTGCGGGGAG-C---------------------------------TT--------------------------------AA..........................................................................................................................................................................................................2111.0010100
.................................................................................................................................................................................................................................................................................................................................................................................................................ATCATTG-----CGT--TT-TTTC-AAAT......................................................................................................................................2011.0010010
dm3
TAATCAATT---------------GA-------TAGCCTAA-------TGTAAAAGTATTCAGGCATTTCAGGTATAGCGTAAC-TGT------------------------------AGATAATAAAATAGAT--GTTA-------AAGTGACATGCATTACCTATTTAGA----------------------GTTTA-----A--TACAC---------TGTTTAACCGT------------------------GACTAGGA-ATTTTTAACA---GTGGTGGGGGAAT-C---------------------------------GT--------------------------------AAATTGTGGGCTACTTAAGA----------TTTATAATCTTATCATTG-----CGTT-TT-TTTC-AAATGT-TTATTT-TTATAACTGT---TGCTTTTGTTTTGATCGCACAACGCCGC----------AGC--TGATTGTGTTTTTGCTGAACT--------------------GCCAACCTGTTG---TAGTT-CT-GCGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
........................................................................GTATAGCGTAAC-TGT------------------------------AGATAATA......................................................................................................................................................................................................................................................................................................................................................................................................................................................2315.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000
..............................................................GGCATTTCAGGTATAGCGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1913.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................TCAGGTATAGCGTAAC-TGT------------------------------AGATAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000
.......................................................GTATTCAGGCATTTCAGGTATAGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................TTCAGGTATAGCGTAAC-TGT------------------------------AGATA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................ATAGCGTAAC-TGT------------------------------AGATAATA......................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100001000000
......................................................................................................................................................................................................................................................................................................................................................................................................TTTATAATCTTATCATTG-----CGT....................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
...............................................................GCATTTCAGGTATAGCGTAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
...................................................................................................................................................................................................................................................................................................................................................................................TACTTAAGA----------TTTATAATCTTA..................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.................................................................ATTTCAGGTATAGCGTAAC-TG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
..................................................TAAAAGTATTCAGGCATTTCAGGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTTTTGTTTTGATCGCACAACGCCG....................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
..............................................................................................................................AAATAGAT--GTTA-------AAGTGA...........................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGATCGCACAACGCCGC----------AGC--TGAT................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
..........................................................................ATAGCGTAAC-TGT------------------------------AGATAATAAAATAGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................TTCAGGCATTTCAGGTATAGCGTA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
.............................................................................................................................................................................................................................................................................TTAACA---GTGGTGGGGGAAT-C---------------------------------G.............................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
.................................TAGCCTAA-------TGTAAAAGTATTC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..............................................................................................................................................................................................................................GTTTAACCGT------------------------GACTAGGA-ATT........................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
................................................TGTAAAAGTATTCAGGCATT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................AATTGTGGGCTACTTAAGT----------..............................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................CATTG-----CGTT-TT-TTTC-AAATGT-TTATT..............................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................TTTTAACA---GTGGTGGGGGAAT-................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................TTA-----A--TACAC---------TGTTTAACCG.............................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................TATCATTG-----CGTT-TT-TTTC-AAA.......................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
............................................................CAGGCATTTCAGGTATAGCGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
..................................................................................AC-TGT------------------------------AGATAATAAAATAGAT--GT..........................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
......................................................................................GT------------------------------AGATAATAAAATAGAT--GTTA-------AAA..............................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................A----------TTTATAATCTTATCATTG-----CG.....................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
............................................................................AGCGTAAC-TGT------------------------------AGATAATAAAATAGAT--G...........................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTGTTTTTGCTGAACT--------------------...........................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
........................................................TATTCAGGCATTTCAGGTATAGCGTAAC-...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
................................................................CATTTCAGGTATAGCGTAAC-...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
......................................................................................................................................................................................................................................................................................................................................GT--------------------------------AAATTGTGGGCTACTTAAG.........................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................CTAGGA-ATTTTTAACA---GTGGT.........................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................TATAATCTTATCATTG-----CGTT-T.................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................AAAGTATTCAGGCATTTCAGGTA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................AGCGTAAC-TGT------------------------------AGATAAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................CATTTCAGGTATAGCGTAAC-T..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................AAC-TGT------------------------------AGATAATAAAATAGAT--GTTA-------.................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................TAAAAGTATTCAGGCATTTCAGGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................GTGGGCTACTTAAGA----------TTTATAATC.....................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................TTATAATCTTATCATTG-----CGTT-..................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000
...TCAATT---------------GA-------TAGCCTAA-------TGTAAAAGTATT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................GTATTCAGGCATTTCAGGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
.....................................................................................TGT------------------------------AGATAATAAAATAGAT--............................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................TGTAAAAGTATTCAGGCAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................CGTAAC-TGT------------------------------AGATAATAAAAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
...........................................................TCAGGCATTTCAGGTATAGCGTAAC-T..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
..................................................................TTTCAGGTATAGCGTAAC-TGT------------------------------AGAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................TCTTATCATTG-----CGTT-TT-TTTC-..........................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
.........................................................................TATAGCGTAAC-TGT------------------------------AGATA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
.......................................................................................................................................................................................................................................T------------------------GACTAGGA-ATTTTTAACA---GT............................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.......................................................................................T------------------------------AGATAATAAAATAGAT--GTTA-------.................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................GTATAGCGTAAC-TGT------------------------------AGATA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
...................................................................TTCAGGTATAGCGTAAC-TGT------------------------------A.............................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................AGGCATTTCAGGTATAGCGTAAC-TGT------------------------------AG............................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................T-TTATAACTGT---TGCTTT.........................................................................................................1720.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................TAACCGT------------------------GACTAGGA-AGG........................................................................................................................................................................................................................................................................................................1820.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000
droEre2
TAATTATTC---------------GAAATGGATTATTC-AACCGTGGATATAAAAGTAATCAGACATTTCAGGTAGA---TAAC-GGT------------------------------AGATAATAAAATAGATATGGTA-------AAATGACATGCATTACTTATTTAGA----------------------GTTTA-----A--TATGG---------TGTATAACCGT------------------------GACTAGGA-ATTTTTAACG---GTGATTGAGGGAG-T--------GTAACACATTTCAT------------------------------------------------ATGTGGGCCACTTAAGA----------TTATTAATCTTATCTCT-----------TT-TCTG-AAATA--TTATTT-TTCTAGCTGT---TGCTTTTGTTTTGATCGCAGAACGCCAC----------AGC--TGATTGT----TTGCTGAACT--------------------GCCAACCTGTTA---TAGTT-CT-GCGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..............................................................GACATTTCAGGTAGA---TAAC-GGT------------------------------A.............................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.0020001100
.................................TATTC-AACCGTGGATATAAAAGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.0020000110
.......................................AACCGTGGATATAAAAGTA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000100
..................................................................................................................................................................................................................................................................CTAGGA-ATTTTTAACG---GTGA..........................................................................................................................................................................................................................................................................................2011.0011000000
........................................................................GTAGA---TAAC-GGT------------------------------AGATAATAAAATAGAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000100
..............................................................GACATTTCAGGTAGA---TAAC-GGT------------------------------AGATA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000100
..ATTATTC---------------GAAATGGATTATT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000010
.....................................................................CAGGTAGA---TAAC-GGT------------------------------AGATAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000100
..............................GATTATTC-AACCGTGGATATAAAAGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000010
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GC--TGATTGT----TTGCTGAACT--------------------GCCAACCT...................2711.0011000000
.................................................ATAAAAGTAATCAGACATTTCAGGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010001000
.................................................................................AAC-GGT------------------------------AGATAATAAAATAGATATGGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000100
..........................................................................................................................AATAAAATAGATATGGTA-------AAA..............................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010001000
............................................................CAGACATTTCAGGTAGA---TAAC-GGT------------------------------..............................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000100
.................................................................ATTTCAGGTAGA---TAAC-GGT------------------------------..............................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000100
...............................................................ACATTTCAGGTAGA---TAAC-GGT------------------------------A.............................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000100
.......................................AACCGTGGATATAAAAGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000010
.................................TATTC-AACCGTGGATATAAAAGTA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0011000000
droYak3
TAATTATTC---------------GA-------T-----------------------------TCATTTC----ATAACGTAAC-GAT------------------------------AACTAATAAAACAAATATGCTA-------GTATGACACGCATTACTT----GGA----------------------GATTA-----A--TCTAG---------TGTTTAACCAT------------------------GACTAGGA-ATTTTAAGCG---GTGGTTCGGGGAG-C--------GTAACACATT-CA------------------------------------------------ATTTTAGGCTACTTGAGA----------TTATTAATCTTATCATTG-----CAT--T--TTTC-AAATG--TTGTTT-TTTTAGCTGT---TGCTTTTGTTTTGATCGCAGAACGCCAC----------AGC--TGATTATGT--TTGCTGAACT--------------------GCCAACCTGTTA---TAGTT-CT-GCGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.....................................................................C----ATAACGTAAC-GAT------------------------------AACTAAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100100000000
.................................................................................................................................................................................................................TAG---------TGTTTAACCAT------------------------GACTAGG.............................................................................................................................................................................................................................................................................................................2111.00101000000000
.................................................................................................................................CAAATATGCTA-------GTATGACACGC......................................................................................................................................................................................................................................................................................................................................................................................................................2211.00101000000000
droEug1
TAATCATTTCC---------------------------------------------------------------AAAGTGCAATCGGT------------------------------AGATAATAAAATAAATCA---A-------ACATGACCTGCATTATATTTATTGT----------------------GTTAA-----AAATGGA-----------------------CTAA-AAATCGATTCTCGGCATGACTACAA-ATTTTTAATG---GTGATTGGTCAAT-CG--------------------ATTTAAGAAGGCGTATAGCACCTGAGCATTCTATTCTACGGCCTTTAT---CAATTTCAATTCAAA-----------ATACAATCTTATCAATA-----TGTATTT-TTTTTAAGTG--TTCT-A-TTATCAGCAC---TGTTATTGTTTTGATCGCTAGCTGCAAC----------AGC--TGACTGT-----AGTG------------------CGGTAATGCCAACTTGTTA---TCAAAACAGACGSizeHit CountTotal NormTotal
No Reads
droBia1
TAATCTTTTCC---------------------------------------------------------------ATTTCGTAGA-TTTTGCT-AAAATA-AAACTAAT--------------------------CA---GATACAGTAAATGACCAGCATTATTTATAATCG----------------------TTGGG--GG--GAAAGA-----------------------CCAAAAAATTGATTTTAGTCATGACTACAA-ACTTTGAATG---CTGATTGGAG-AGTTGTTTGATTCCTGTGTATTTCCA------------------------------------------------AATTGGGCCACTTAAGGGGTGTATTAGTGAATAATCTTATCATAT-----CAATATA-TTTCGAAATA-----T-C-TTATCAGCAT---------TGTTTGGAGTGCCAGTTAAAAC----------AGC--TGATTGT-----GGCTGGGCT--------------------GCCAGCCCGTTT---TCATACCA-ACGSizeHit CountTotal NormTotal
No Reads
droTak1
TAAAGATTTCC---------------------------------------------------------------AAAGCGTAAC-TGTAGAT-AAAAGA-AAACTAAT--------------------------CA---AACACTTTAAATGACCTGCATTATTTATGTGGT----------------------GTTGAG-GGAAAAAAGA-----------------------CTAA-AAATCGATTTTAGCCATGACTACAACATTTTTAGTG---GTGATTGGGG-AG--------------TACACTCCAA-----------------------------------------------AATTTAGGCCACTTAAAG----------CGTACAATCTTATCAGTT-----CGAT-TT-TTTCAAAATG--TTTT-C-TTATCAGCAA---------TGTTTTGTACGCCGGCCGCCAC----------AGC--TGATTGC-----GGCGGAGCT--------------------GCCAACCTGTTT---TGG---------SizeHit CountTotal NormTotal
No Reads
droEle1
TAATCATATCC---------------------------------------------------------------CTAACGTAAT-TGTAG---AGATTA-AAACTAAT--------------------------CA---GACATTTTAAATAGCCTGCAATAATTATTGGGT----------------------GCGAAG--C--GAAAGA-----------------------CTGC-AAATCGACTGTAGTCTTAGCTACAA-ACTTGTAATG---GTGATTGGGCGAA-T--------T------------------------GT--------------------------------AT---ATATTTCACTAAACA----------CTTTCAATCTTATCAAAT-----CGTCTTT-TTTGGAATTG--TTTTCG-TTATCGGCAT---TGTTTTTGTTTTGATCGCGGGCTGCAAC----------AGC--TGATTGT-----GACGGAACT--------------------GCCAACCTATCTTTCGCATT-CC-GCASizeHit CountTotal NormTotal
No Reads
droRho1
TAATCTTATCC--------------G-------TATTC-------------------------------------------AAA-CGT------------------------------AAAGAATAAAACGAATTT---G-------TATTGACC----TTACTTATGTATG--TATATATGTTTTGGGT----GCGAGG--A--AAAAGA-----------------------TTAC-AAATCGACTGTGGTCATAACTAC-------CCAACGAAGTTGATGGAG--AG-G--------GTTATACATTCCAAATTTAG---------------------------------------------GAGGCGATT---------------TGTTCAATCTTATCATAC-----ACAT-TA-TTTC-AAATTTGTTTTCG-TTATCAGCAT-------TTTCTTTTGATCGCGGGCTGCAAC----------AGC--TGATTGT-----GGTGGAACT--------------------GCCAACCTGTTT---GCATT-CC-GCASizeHit CountTotal NormTotal
No Reads
droFic1
TAACTCTAA------------------------------------------------------------------------------------AAAGTA-AAACCGAT--------------------------TA---AACATTCTTAAATATTTGTACCATTTACTGGAT----------------------GATAAGCTA--CAAATA-----------------------CTGA-AAA---------------------------ATAATG---GTGATTGGGGGAA----------------------------------------------------------------------------------------------------GTTTAATCTTATCAAAT-----CGAATTG-TTTGGTAATG--CTACCG-TTATCAGCTTTTTTTGTTTTGTTTTTATCTCATTCTGCGAC----------AGC--TGATTAC-----AGGAGAGCT--------------------GCCAACCTGTGT---TGACA-CT-GTGSizeHit CountTotal NormTotal
No Reads
droKik1
TGAAAAGTA---------------GA-------TA-----------------------------------------------------------AGAAA-----------------------------------TA---A----------------ACATTTCTT--------------------------------TG-----C--TTCGG---------TGCTTAACAATGACTAA-AAATCGATTGTAATCATTACGGCCC-ATTTTAATAG---GTAGCTGTAGGAA-G--------------------------------CGT--------------------------------A------------TTTTCGG---------TTGTTAAATCTTATCTGTT-----CGAT-TATTTGG-GA--A--TTTT-G-TTATCAGCTT---TGTTTTTGTTTTGAT------TTGGAAC----------AGC--TGATTGC-----GGCAGGACT--------------------GCCAACCCGTGT---TAGTT-TT-GAGSizeHit CountTotal NormTotal
No Reads
droAna3
TAACC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
TAACATGATCA--------------A-------TA---------------------------------------------------------------AACAACA-------------------------------------------------ATACTTTACTTACCTGAAACCATACCAGTTTTTTGTTAGATTCCA-----A--AATA-----------------------ATGA-TA----------------------A-A-------------TTTTTGGGC-AA--------------TCCCTTTCCG-----------------------------------------------ATTATAGCCTATTTTATG---------GTGGTTAATCTAATCAAATCATTGAGT--TC-TCCA-AGAGA--TTACCTTTTATTACCTA---------TGCT---------TACCAAC-CCATCTGTTGCTGTTTTGATTGG----CGGCAGTGCTGCCACCTGGCGGGCAT-----------TGGTG---TAGAC-AT-GTTSizeHit CountTotal NormTotal
No Reads
dp5
CATTTTGTTTTTTTTTTTATTTCC----------------------------------------------------------------TT--T---------------------------------------------T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G-ATATCAGTT------------------TCGCTCAACGAC-C----------AGC--TGTTTGT----CGGCGGTGCT--------------------GCCAACCTGTG----------CT-GTASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
CATTTTGTTTTTTTTTTTATTTCC----------------------------------------------------------------TT--T---------------------------------------------T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G-ATATCAGTT------------------TCGCTCAACGAC-C----------AGC--TGTTTGC----CGGTGGTGCT--------------------GCCAACCTGTG----------CT-GTASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
TAATAAAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droVir3
TAATAGCGT---------------GG-------AATTCGAA-------TAG-----------------------------------------------A-TAACAATTCATGAATTCTAGATAGAAAGATTGCCATT-GG-------CAATGACTTTTAATATCTATCTGTA----------------------TATCA-----A--TA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
............................................................................................................CATGAATTCTAGATAGAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
......................................................................................................................AGATAGAAAGATTGCCATT-GG-------C................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
....................................................................................................................CTAGATAGAAAGATTGCCATT-GG-------C................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000100000000000000000000000000000000000000000000000000000000000
.................................................AG-----------------------------------------------A-TAACAATTCATGAATT................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................AGAAAGATTGCCATT-GG-------C................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000100000000000000000000000000000000000000000000000000000000000
........T---------------GG-------AATTCGAA-------TAG-----------------------------------------------A-TAACA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2030.331000000000000000100000000000000000000000000000000000000000000000

Generated: 05/19/2015 at 02:53 AM