ID:

dsi_15709

 Coordinate:

2r:5495042-5495191 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-12.6 -12.4 -12.4 -12.3

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

CTCTCTGTGCGACTCTCAGTGGCCTCCTGCTGCACGATGCCGATGCGATGGTGAGATGTATTTCACAGATACTCGTTCTTTGGCGGTCGGCGCGTCGCGAGCTTCGAGGTTTTAGTTCGGTTTTAGCTCTGATTCCGTGAGGACGCTCGCCAGAGGAACCGCTCCGCGTTCCGTTCCGTTATTCGACTCGGGGACCTCGCACGGGGCCTACCGCTCACCCACACTTCTTCAAGCGCAAGCACACACACAC
************************************************************************************************************************************......((.((....((.....((((.(((...)))))))....))....))...))************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 M023
head
 O002
Head
 SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
 M024
male body		 SRR902009
testis
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
....................................................................................................................................TTCCGTGAGGACGCTCGC.................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.......................................................................................................................................................................GTTCCGTTCCGTTATTCGACTC............................................................. 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0
......................................................................................................................................................................................TCGACTCGGGGACCTCGC.................................................. 18 0 1 1.00 1 0 0 1 0 0 0 0 0 0
.............................................................................................................................GCTCTGATTCCGTGAGGACGCTCGCC................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.........................................................................................................................TTTAGCTCTGATTCCGTGAGGACGCT....................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..............................................................................................................................CTCTGATTCCGTGAGGACG......................................................................................................... 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0
....................................................................................................................................TTCCGTGAGGACGCTCGCCAGAGGAACCG......................................................................................... 29 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..............................................................................................................................................ACGCTCGCCAGAGGAACCGC........................................................................................ 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0
..............................................................................TTTGGCGGTCGGCGCGTCGC........................................................................................................................................................ 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0
........................................................................................................................................TTGAGGACGCTCGCCAGAGGAACCGCT....................................................................................... 27 1 1 1.00 1 0 1 0 0 0 0 0 0 0
........................................................................................................................................................................................................ACCGGGCCTACAGCTCAACC.............................. 20 3 2 1.00 2 0 0 0 0 0 2 0 0 0
...................................................................................................................................ATTCCGTGAGGACGCTCGCC................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...................................................................................................................................ATTCCGTGAGGAGCGTCGCCAGA................................................................................................ 23 3 1 1.00 1 0 0 0 0 1 0 0 0 0
..............................................................................................................................CTCTGATTCCGTGAGGAC.......................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.......................................................................................................................................CGTGAGGACGCTCGCCAGAGGAACCGCT....................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..........................................................................................................................TTAGCTCTGATTCCGTGAGGACGCT....................................................................................................... 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0
.............................................................................................GTTGCGATCATCGAGGTTTT......................................................................................................................................... 20 3 8 0.75 6 0 0 0 0 0 0 6 0 0
..............................................................................................................................CTCTGGTTCCGTGAAGAC.......................................................................................................... 18 2 2 0.50 1 0 1 0 0 0 0 0 0 0
.................AGTAACCTCCTGCTGAACGA..................................................................................................................................................................................................................... 20 3 4 0.25 1 0 0 0 0 0 0 0 1 0
...............................................................................................................................................................................CCGTTATTCGGATCCGGGA........................................................ 19 3 10 0.10 1 0 0 0 0 0 0 0 0 1
...............................................................................................................................TGTGATTCCGTGAGTA........................................................................................................... 16 2 20 0.10 2 0 0 0 0 2 0 0 0 0
.........................................................................................................................................................................................................CGGGGCCTAACGCGAACC............................... 18 3 12 0.08 1 0 0 0 0 0 1 0 0 0
.......................................................................................................................................................................................................................................AGCGCAAGTACACACA... 16 1 17 0.06 1 0 0 0 1 0 0 0 0 0
.........................................................................................GCGCGTCGCGCGCCTC................................................................................................................................................. 16 2 20 0.05 1 0 0 0 1 0 0 0 0 0
.......................................................................................GGGCGGGTCGCGAGCT................................................................................................................................................... 16 2 20 0.05 1 0 0 0 1 0 0 0 0 0
.......................................................................................CGGAACGTCGGGAGCTTC................................................................................................................................................. 18 3 20 0.05 1 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

GAGAGACACGCTGAGAGTCACCGGAGGACGACGTGCTACGGCTACGCTACCACTCTACATAAAGTGTCTATGAGCAAGAAACCGCCAGCCGCGCAGCGCTCGAAGCTCCAAAATCAAGCCAAAATCGAGACTAAGGCACTCCTGCGAGCGGTCTCCTTGGCGAGGCGCAAGGCAAGGCAATAAGCTGAGCCCCTGGAGCGTGCCCCGGATGGCGAGTGGGTGTGAAGAAGTTCGCGTTCGTGTGTGTGTG
*************************************************************......((.((....((.....((((.(((...)))))))....))....))...))************************************************************************************************************************************ 		Read size # Mismatch Hit Count Total Norm Total SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 M024
male body		 SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
...................................................................................................................................................................................................GTGGGTGCCCCGGATGGAGA................................... 20 3 2 0.50 1 0 1 0 0 0
......................................................................................................................CCAAGACCGAGACTAAAGCACT.............................................................................................................. 22 3 2 0.50 1 0 0 1 0 0
.................................................................................................................................................................GAGGCGCAAGTCAACGCA....................................................................... 18 2 7 0.43 3 3 0 0 0 0
.................................................................................................................................................................GAGGCGCAAGTCAACGCAA...................................................................... 19 2 3 0.33 1 1 0 0 0 0
......................................................................................................................................................................GCAAGGCAAGGCGATA.................................................................... 16 1 4 0.25 1 0 1 0 0 0
...........................................................................................................CCAAAATCATGCCAA................................................................................................................................ 15 1 12 0.17 2 2 0 0 0 0
.............AGAGTCATCGGAGGA.............................................................................................................................................................................................................................. 15 1 7 0.14 1 0 0 0 1 0
......................................................................................................................CCAAGACCGAGACTAAAGCAC............................................................................................................... 21 3 8 0.13 1 0 0 1 0 0
...........................................................................................................CCAAAATCATGCCAAA............................................................................................................................... 16 1 10 0.10 1 1 0 0 0 0
..GAGAAACGCTGAGAG......................................................................................................................................................................................................................................... 15 1 14 0.07 1 0 0 0 1 0
.......................................................................................................................................................................................GCTTGGCCCCTGGAGCG.................................................. 17 2 16 0.06 1 0 1 0 0 0
...................................................................................................................................................GCGGTCTACTTGGCG........................................................................................ 15 1 16 0.06 1 0 0 0 0 1
...............................................................................................................................................................GCCAGGCGCAAGTCAAAGC........................................................................ 19 3 20 0.05 1 0 0 0 0 1
...........................................................................................................................................................CTTGGCGAGTCGCCAG............................................................................... 16 2 20 0.05 1 1 0 0 0 0

Generated: 04/23/2015 at 03:20 PM