ID:

dsi_15699

 Coordinate:

2l:386981-387130 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-2.4 -1.9

Flybase annnotation

intergenic

Repeatable elements

NameClassFamilyStrand
T-richLow_complexityLow_complexity+

Sense Strand Reads

TCCGCAACGCTAACCGATTTTGTCCGCTGCGAGTAAAAAAAATCGGAAAAGTAAGCTCAAAAAAAGAACAGCTAACATACGCCCATTAATGTTTTTGGAGGCTTCTTCGGTGTTTTTTTTTGGTCGAAACGCCCTCGTCATCCAGCGGTGAAAAAAGTGACGTGACATGAAGGCAAAGCAAAGAAAGAAGAGAACCGAAGAGCGCAGTGAAAAACAGAAAATAAAACGAAATGGAAAGCAAAGCAAAAAA
************************************************************************************..........((((((....))))))................**************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 M024
male body		 SRR553486
Makindu_3 day-old ovaries
 SRR902009
testis
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
....................................................................................ATTAATGTTTTTGGAGGC.................................................................................................................................................... 18 0 1 2.00 2 2 0 0 0 0 0 0 0
...........................................................................................TTTTTGGAGGCTTCT................................................................................................................................................ 15 0 1 1.00 1 0 0 1 0 0 0 0 0
............................................................................................................GGTGTTTTTTTTTGGTCG............................................................................................................................ 18 0 1 1.00 1 1 0 0 0 0 0 0 0
...........AACCGATTTTGTCCGCTGC............................................................................................................................................................................................................................ 19 0 1 1.00 1 0 1 0 0 0 0 0 0
.......................................AAATCGGAAAAGTAAGCTC................................................................................................................................................................................................ 19 0 1 1.00 1 0 0 1 0 0 0 0 0
............................................................AAAAAGAACGGCTAACATACG......................................................................................................................................................................... 21 1 1 1.00 1 0 0 0 1 0 0 0 0
.......................................................................................................................................................AAAAAGTGACGTGACATGAAG.............................................................................. 21 0 1 1.00 1 0 0 0 1 0 0 0 0
................................GTAAAAAAAATCGGAAAAGT...................................................................................................................................................................................................... 20 0 1 1.00 1 0 1 0 0 0 0 0 0
...................................................................................CATTAATGTTGTTGGAAGC.................................................................................................................................................... 19 2 2 0.50 1 0 1 0 0 0 0 0 0
...........................................................................................................................................................AGTGACGGACCATGAAGGCA........................................................................... 20 3 3 0.33 1 0 0 0 0 1 0 0 0
.........................................................................................................................................TCATCCAGCGGATAAAAA............................................................................................... 18 2 11 0.18 2 0 0 0 0 0 2 0 0
..............................................................................................................................................................................AAAGCAAAGAAAGGAGA........................................................... 17 1 6 0.17 1 0 0 0 0 1 0 0 0
.............................................................................................................................................................................................TAGAACTGAAGAGCCCAGTG......................................... 20 3 7 0.14 1 0 0 0 0 0 0 1 0
.......................................................................................................................................................................................ACAGAAGAGAACCGCAGTGC............................................... 20 3 8 0.13 1 0 0 0 0 0 0 0 1
................................................AAGGAAGCTCAAAAATTGAAC..................................................................................................................................................................................... 21 3 8 0.13 1 0 1 0 0 0 0 0 0
.........................................................................................................................................TCATCCAGCGGATAGAAAA.............................................................................................. 19 3 20 0.10 2 0 0 0 0 0 2 0 0
..........................................................................................................................................................................................GATGATAACCGAAGAGCCC............................................. 19 3 12 0.08 1 1 0 0 0 0 0 0 0
...............................................................................................................................AATGCGCTCGTCATCCA.......................................................................................................... 17 2 16 0.06 1 0 0 0 0 0 1 0 0
...........................................................................................................................................................................................................................AACAAAACGGAATGGAAAG............ 19 2 17 0.06 1 0 0 0 0 0 0 1 0
.................................................................................................................................................................................................ACCGAAGAGAGCAGT.......................................... 15 1 20 0.05 1 0 0 0 0 0 1 0 0
.............................................GAATAGTTCGCTCAAAAAA.......................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 1 0

Anti-sense strand reads

AGGCGTTGCGATTGGCTAAAACAGGCGACGCTCATTTTTTTTAGCCTTTTCATTCGAGTTTTTTTCTTGTCGATTGTATGCGGGTAATTACAAAAACCTCCGAAGAAGCCACAAAAAAAAACCAGCTTTGCGGGAGCAGTAGGTCGCCACTTTTTTCACTGCACTGTACTTCCGTTTCGTTTCTTTCTTCTCTTGGCTTCTCGCGTCACTTTTTGTCTTTTATTTTGCTTTACCTTTCGTTTCGTTTTTT
****************************************************************************************************************************..........((((((....))))))................************************************************************************************ 		Read size # Mismatch Hit Count Total Norm Total M023
head
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR902009
testis
 SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 GSM343915
embryo
 SRR553485
Chicharo_3 day-old ovaries
..............................................................................................................................TTTGCGGGAGCAGCAGGTC......................................................................................................... 19 1 1 1.00 1 1 0 0 0 0 0 0 0
..................................................................................................................................CGGAACCAGTAGGTCGCC...................................................................................................... 18 2 1 1.00 1 0 0 1 0 0 0 0 0
.....................CAGGCGACGCTCATTTTTTT................................................................................................................................................................................................................. 20 0 1 1.00 1 0 0 0 1 0 0 0 0
...................................................................TGTCGATTGTATGCGGGTAAT.................................................................................................................................................................. 21 0 1 1.00 1 0 1 0 0 0 0 0 0
.........................................................................................................................................................................................................................TTTTATTTTGCTTTACATTCCCTT......... 24 3 5 0.20 1 0 0 0 0 1 0 0 0
...........................................................................................................................................................................CCGTTTCGATTCATTCTT............................................................. 18 2 7 0.14 1 1 0 0 0 0 0 0 0
.....................CAGGCGACGGTGATTATTTT................................................................................................................................................................................................................. 20 3 11 0.09 1 0 0 0 0 0 0 1 0
...................................................................................................................................GGGAGCTGTAAGTCGCC...................................................................................................... 17 2 13 0.08 1 0 0 0 0 0 1 0 0
.....................................................................................................................................................................................TCTTTCTTCTCTTGC...................................................... 15 1 19 0.05 1 0 1 0 0 0 0 0 0
.................................ATTTTTTTTAGCCTTA......................................................................................................................................................................................................... 16 1 20 0.05 1 0 0 0 0 0 1 0 0
...............................................................................................................................................................CGCACTGTCCTTCCGT........................................................................... 16 2 20 0.05 1 0 0 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2l:386931-387180 - dsi_15699 TCCGC-------AACGCTAACC----------------GATTTTGTCCGCT-G----------------------------------------CGAGT---AAAAAAA-------ATC---------GGAAAAGTAAGCT-----CAA---------------------A--------AAAAGA---ACAGCTA-----AC------ATACGCCCATTAATGTTT-----------------TTGGAGGCTTC------TTCGGTG---TTTTTTT-TTG------GTCGAAACGCCCTCGTCATCCAGCGG-TGA--------AAAA----------------------------------------------AGTGACGTGACAT-GAAG-GCAAAGCAAAGAAAGAAGAGAA-----C--CG--AAGAGCGCAGTGA---------AAAACAGAAAATAAAACGAAATGGAAAGCAAAGCA--AAAAA
droSec2 scaffold_14:397999-398250 - TCCGC-------AACGCTAACC----------------GATTTTGTCCGCT-G----------------------------------------CGAGT---AAAAAAA-------ATC---------GGAAAAGTAAGCT-----CAA---------------------A-------AAAAGGA---ACAGCTA-----CC------ATACGCCCATTAATGTTT-----------------TTGGGGGCTTC------TTCGGTG---TTTTTTTTTTG------GTCGAAACGCCCTCGTCATCCAGCGG-TGA--------AAAA----------------------------------------------AGTGACGTGACAT-GAAG-GCAAAGCAAAGAAAGAAGAGAA-----C--CG--AAGAGAGCAGTGA---------AAAACAGAAAATAAAACGAAATGGAAAACAAAGCA--AAAAA
dm3 chr2L:414244-414493 - TCCGC-------AACGCTAACC----------------GATTTTGTCCGCTGG----------------------------------------CGAGT---AAAAAAA-------ATC---------GGAAAAGTAAGCT-----CAA---------------------AA------AAAAAGA---ACAGCTA-----AC------ATACGCCCATTAATGTTT-----------------TTGGAGGCTTC------TTCGGTG-CTTTTTT-TTTTG------GGCAAAACGCCCTCGTCATCCAGCGG-TGA--------AAAA----------------------------------------------AGTGACGTGACAT-GAAA-GCAA-----AGAAAGAAGAGAA-----C--CG--AAGAGCGCAGTGA---------AAAACAGAAAATAAAACGAAACGGAAAGCAAAGTA--AAAAG
droEre2 scaffold_4929:465716-465973 - TCCGC-------AACGCTAACC----------------GATTTTGTCCGCT-G----------------------------------------CGAGT---AAAAAAA--------TT---------AGAAAAGTAAGCT-----AAA---------------------AAAAAAAAAAAAATA---ACAGCTA-----AC------ATACGCCCATTAATGTTT-----------------TTGGAGGCTTC------TTCGGTG---CTTTTTT-TTG------GGCGAAACGCCTTCGTCATCCAGCGG-TGA--------AAAA----------------------------------------------AGTGACGTGACAT-GAAG-GCAAAGCAAAGAAAGAAGAGAA-----G--CA--GAGAGCGCAGTGA---------AAAACAGAAAATAAAACGAAACGGAAAGCGAAAAT-AGCAAA
droYak3 2L:397918-398175 - TCCGC-------AACGCTAACC----------------GATTTTGTCCGCT-G----------------------------------------CGAGT---AAAAAAAT-------TC---------GGAAAAGTAAGCC-----CAA--------------------CAAAAAAAGAAAAAAA---ACAGCTA-----AC------ATACGCCCATTAATGTTT-----------------TTGGAGGCTTC------TTCGGGG---TTTTTT--TTG------GGCGAAACGCCTTCGTCATCCAGCGG-TGA--------AAAA----------------------------------------------AGTGACGTGACAT-GAAG-GCAAAGCAAAGAAAGAAGAGAA-----G--CA--GAGAGCGCAGTGA---------AAAACAGAAAATAAAACGAAACGGAAAGCGAAGCA--GAAAA
droEug1 scf7180000409554:1143034-1143277 - TCCGC-------AACGCTAAGC----------------GATTTTGCCCGCA-C----------------------------------------CGAGT---GAAAAAA--------TC---------GGCAAAGTAAGCC-----CCA---------------------A--------AAAATA---A--TTTA-----TA------ATACGCCCATTAATGTTTT-AG--------------TGGTGGCTTC------ATTTGTTTCTTTTTT-TTTGG------GGCGAAACGCCTTCGTCATCCAGTGC-TGA--------AAAA----------------------------------------------AGTGACGTGACAT-GAAG-GCAA------GAAAGAA---------GGCGCA--AAGAGCGCAGTGA---------AAAACAGAAAATAAAACGAAACGGAAAGCGAAACA--GAAAA
droBia1 scf7180000302261:3427118-3427368 + TCCGC-------AACGCCTGGC----------------GACTTCGACCGCT-G----------------------------------------CGAGT---GAAAA---------ATC---------GGAAAAGTAAGCC-----CCC---------------------A-------GAAGAGCTCAGCAGCTCTG--CACA-----ATACGCCCATTAATGTTT------------GGTTTTCGGTGGCTTC------TTCGGTG---TTT-----TTG------GGCGAAACGCCTTCGTCATCCAGCGGGTGA---------AAA----------------------------------------------AGTGACGTGACAT-GAAG-GCAA------GAAAGAAGAGAA-----GCGCA--GAGAGCGC-GTGA---------AAAACAGAA-ATAAAACGAAACGGAAAGCGAAACA--GAAAA
droTak1 scf7180000413017:101810-102053 + TCCGC-------AACGCCAAC-----------------G-------------G----------------------------------------CGAGT---GAAAAAAT-------TG---------GGAAAAGTAAGCGAC---CCCG--------------------G-------GAAAAGT---TCGGCTC-----A-------ATACGCCCATCAATGTTTT-AG---TTTT-CGTTTTCGGTGGCTTC------TTTGGTG---TTTTTTT-TGG------GGCGAAACGCCTTCGTCATCCAGCGG-TGA--------AAAA----------------------------------------------AGTGACGTGACATCGAA-----------CGAAAGAAGAGAA-----GCGCG--GAGAGCGCGGTGA---------AAAACAGAAAATAAAACGAAACGGAAAGCGAA-CA--ACAGA
droEle1 scf7180000491026:422651-422913 + TCCGC-------AACGCTCAAC----------------GATTTTGTCCGCT-G---TAA---------------------------------CCGAGCATCGAACAAAT-CGGAAATC---------GGAGAAGTAAGCT-----CCC---------------------A-------AAAA---------------AACACATTATAATACGCCCATTAATGTTTTTAA-----------TTTCGGTGGCTTC------TTTGGTG---TCTTTTTTTTG------GGCGAAACGCCTTCGTCATCCAGCGG-TGA---------AAA----------------------------------------------AGTGACGTGACAT-GAAG-GCAA------GAAAGAA---------GGCGCAAAGAGAGCGCAGTGA---------AAAACAGAAAATAAAACGAAACAGAAAGCGAATCA--GAAAA
droRho1 scf7180000779917:249944-250198 + TCCGC-------AACGCCAAAC----------------GATTTTGTCCGCT-G---TTA---------------------------------CCGAGT---GAAAAAAT-CGGAAATC---------GGAGAAGTAAGCT-----CCA---------------------C-------AAAA---------------ACCACAATAT-GTACGCCCATTAATGTTTT-A----------GTTTTCGGTGGCTTC------TTCGGTG---TTTTTT--TTG------GGCAAAACGCCTTCGTCATCCAGCGA-TGA--------AAAA----------------------------------------------AGTGACGTGACAT-GAAG-GCAA------GAAAGAA---------GGCGCA--AAGAGCGCAGTGA---------AAAACAGAAAATAAAACGAAACAGAAAGCGATGTA--GA-AA
droFic1 scf7180000453904:684126-684373 - TCCGC-------TACGCTAAAC----------------GATTGTGACCGCT-G---TCT---------------------------------CCGTGT---GAAAAAATTCGGAAATC---------GGAAAAGTAAGCC-----TCC---------------------G---------AA---------------ACCACAATA--GTACGCCCATTAATTTCG--A----------GTTTTCGGTGGCTTC------ATTGGTG---TTTTTT--TT-------GGCGAAACGCCTTCGTCATCCAGCGG-TGAA-------AAAA----------------------------------------------AGTGACGTGACAT-GAAGAACGA------GAAAGAT---------GGCACA--AAGAGCGCAATGA---------AAAACAGAAAATAAAACGAAACAGAAAGCGAAAC--------
droKik1 scf7180000302270:747045-747314 + TCCGG-------AACGCCAA-C----------------GATTTTCCCC--T-GCTG---CTGCCGCTGCTG---------CTGTTGGGTGCTCCGAGT---GAAAAAA-------------------AGCAAAGTAAGCTCC---CC----------------------C-------GAAA---------------ACCACA-----ATACGCCCATTAATGTTT------------G--TTTCGGTGGCTCCG-----TTTGGGG---TTT------T-------GGCGAAACGCCTTCGTCATCCAGCGG-AGAGA------AAAA----------------------------------------------AGTGACGTGACAT-GAAA-GCAA------GAA---------CGGGCGCACA--AAGAGCGAAATAAAAAACACAGAAAACAGAACATAAAGCGTAACCGAAACGGAAACCG-AAATC
droAna3 scaffold_12943:4839936-4840187 + TCCAA-------AGCG-------AG------CTCCAACGATTTTCCCCACG-G---CTTCTGCTGCTGCTG---------CT--------------CT---AAAATA--------ATC---------AGAAAAGTAAGCTTC---CCCA--------------------------------------------A-----AT------ATACGCCCATTAATGTTTT------------G-TTTCGGGGG-----GCATCGCAAGTA---TTTTTTT-TTATTAGCGAACGAAACGCCTTCGTCATCCAGCAG-AGAAAA-A-AAAAAA----------------------------------------------AGTGACGTGACAT-GAAA-GCCA-----GAAAAGAAAAGAACGAGCGCACA--AAGAGTGAAATAA---------AAAACAGAACATAAAAC-------------------------
droBip1 scf7180000395654:194625-194876 - TCCAC-------AGCG-------AG------CTCCAACGATTTTCCCCACG-G--------GCTGCAGCTG---------CT--------------GT---AAAATAAT-CTGAAGGC---------AAAAAAGTAAGCTGCTTCCC----------------------C-------AAAA---------------ACCACAATAT-ATACGCCCATTAATGTTT------------G--TTTCGGGGG-----GCATCGCTGGT----------------------ACGAAACGCCTTCGTCATCCAGCAAGAGAAAAAAAAAAAAA----------------------------------------------AGTGACGTGACAT-GAAA-GCCA-----GAAAAGAAAAGAACGAGCGCACA--AAGAGTGAAATAAAA-------AAAACAGAACATA--------------------------AAA
dp5 4_group3:1219904-1220188 + TCCAGCACAACCAACGCCAGCCGAGCCAAACCACCAACCATTTTT--CACT-GCGG-----GTCGCCTCTCATCGGGATCGTGTG---TA--------------------------CTATTTAAGCATAAAAAGTAAGCAGC---CGCAAGTCGAACCCAAAGCCCCATG-------GAAA---------------AACAC------ATACGCCCATTAATGTTT------------G--TTTCG------------------GT------------TTGT--GCCAATAAAATGACTTCGTCATCTCGCGA-AGAAAA-AAATATAA----------------------------------------------AGTGACGTGACGT-GAAA-GCGA--------A---------CGAGTGCACA--AAGGCAGCAACAA---------AGA-----GCCCAAAACGGATCAGAAGCT-A--------GAA
droPer2 scaffold_1:2690729-2691013 + TCCAGCACAACCAACGCCAGCCGAGCCAAACCACCAACCATTTTT--CACT-GCGG-----GTCGCCTCTCATCGGGATCGTGTG---TA--------------------------CTATTTAAGCATAAAAAGTAAGCAGC---CGCAAGTCGAACCCAAAGCCCCATG-------GAAA---------------AACAC------ATACGCCCATTAATGTTT------------G--TTTCG------------------GT------------TTGT--GCCAATAAAATGACTTCGTCATCTCGCGA-AGAAAA-AAATATAA----------------------------------------------AGTGACGTGACGT-GAAA-GCGA--------A---------CGAGTGCACA--AAGGCAGCAACAA---------AGA-----GCCCAAAACGGATCAGAAGCT-A--------GAA
droWil2 scf2_1100000004585:2790461-2790695 + TCCAT-------CAAACACTTC----------------GAATTTGTT--------------------------------------------------------------------ATT---------GTTAAAGTAAGCAAC---TACAA-------------------C-------AGCA---------------ACCA-------------CTAACAACGTTA---ATAAAGTTTGA-TTTCG------------------GTT---TGTTTTGTGCG------AATAAAACGTCTTCGTCATCTTTCTAGCGAAAG-A-AAAAAAAGTAGAAAAAAATTCGTGACGTCGACTGCGGCAGCGACTGGACAGCAGCGACGTGACAT-GAAA-GCGA------A-A---------CG--GGCACA--AAGAGTGTTT------------------------------------------AAACA--AAAAG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
TCCGC-------AACGCTAACC----------------GATTTTGTCCGCT-G----------------------------------------CGAGT---AAAAAAA-------ATC---------GGAAAAGTAAGCT-----CAA---------------------A--------AAAAGA---ACAGCTA-----AC------ATACGCCCATTAATGTTT-----------------TTGGAGGCTTC------TTCGGTG---TTTTTTT-TTG------GTCGAAACGCCCTCGTCATCCAGCGG-TGA--------AAAA----------------------------------------------AGTGACGTGACAT-GAAG-GCAAAGCAAAGAAAGAAGAGAA-----C--CG--AAGAGCGCAGTGA---------AAAACAGAAAATAAAACGAAATGGAAAGCAAAGCA--AAAAASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.......................................................................................................................................................................................................................ATTAATGTTT-----------------TTGGAGGC.................................................................................................................................................................................................................................................1812.00220000000000000000
..............................................................................................................................................................................................................................TTT-----------------TTGGAGGCTTC------T.......................................................................................................................................................................................................................................1511.00100000001000000000
......................................................................................................................................................................................................................................................................GGTG---TTTTTTT-TTG------GTCG.........................................................................................................................................................................................................1811.00110000000000000000
..................AACC----------------GATTTTGTCCGCT-G----------------------------------------C.............................................................................................................................................................................................................................................................................................................................................................................................................1911.00101000000000000000
..........................................................................................................AA-------ATC---------GGAAAAGTAAGCT-----C.........................................................................................................................................................................................................................................................................................................................................................1911.00100000001000000000
....................................................................................................................................................................................................................................................................................................................................AAAA----------------------------------------------AGTGACGTGACAT-GAAG-..................................................................................................2111.00100000000000001000
................................................................................................GT---AAAAAAA-------ATC---------GGAAAAGT....................................................................................................................................................................................................................................................................................................................................................................2011.00101000000000000000
droSec2
TCCGC-------AACGCTAACC----------------GATTTTGTCCGCT-G----------------------------------------CGAGT---AAAAAAA-------ATC---------GGAAAAGTAAGCT-----CAA---------------------A-------AAAAGGA---ACAGCTA-----CC------ATACGCCCATTAATGTTT-----------------TTGGGGGCTTC------TTCGGTG---TTTTTTTTTTG------GTCGAAACGCCCTCGTCATCCAGCGG-TGA--------AAAA----------------------------------------------AGTGACGTGACAT-GAAG-GCAAAGCAAAGAAAGAAGAGAA-----C--CG--AAGAGAGCAGTGA---------AAAACAGAAAATAAAACGAAATGGAAAACAAAGCA--AAAAASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..................AACC----------------GATTTTGTCCGCT-G----------------------------------------CGAGT---A.....................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100
.......................................................................................................................................................................................................................................................................................................................................................................................GTGACGTGACAT-GAAG-GCAAAGC...........................................................................................2311.0010100
.......................................................................................................................................................................................A---ACAGCTA-----CC------ATACGCCCATTTG...............................................................................................................................................................................................................................................................................2311.0011000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATGGAAAACAAAGCA--.....1811.0010010
....................................................................................................................................................................................................................................................................................................................................AAAA----------------------------------------------AGTGACGTGACAT-GAAG-..................................................................................................2111.0010100
.......................................................................................................................................................................................................................................................................................................................G-TGA--------AAAA----------------------------------------------AGTGACGTGACA.........................................................................................................2011.0010001
.....................C----------------GATTTTGTCCGCT-G----------------------------------------CGAGT---......................................................................................................................................................................................................................................................................................................................................................................................................2011.0011000
...................................................................................................................................AAGTAAGCT-----CAA---------------------A-------AAAAGGA---AC..............................................................................................................................................................................................................................................................................................................2211.0011000
...................................................................................................................................................................................................................................................................................TTTTG------GTCGAAACGCCCTCGT.............................................................................................................................................................................................2111.0010100
............................................................................................................................................................................................................................................................................................................................................................................................................................GAA-----C--CG--AAGAGAGCAGTG....................................................1811.0010010
dm3
TCCGC-------AACGCTAACC----------------GATTTTGTCCGCTGG----------------------------------------CGAGT---AAAAAAA-------ATC---------GGAAAAGTAAGCT-----CAA---------------------AA------AAAAAGA---ACAGCTA-----AC------ATACGCCCATTAATGTTT-----------------TTGGAGGCTTC------TTCGGTG-CTTTTTT-TTTTG------GGCAAAACGCCCTCGTCATCCAGCGG-TGA--------AAAA----------------------------------------------AGTGACGTGACAT-GAAA-GCAA-----AGAAAGAAGAGAA-----C--CG--AAGAGCGCAGTGA---------AAAACAGAAAATAAAACGAAACGGAAAGCAAAGTA--AAAAGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
............................................GTCCGCTGG----------------------------------------CGAGT---AAAAAAA-------ATC---------............................................................................................................................................................................................................................................................................................................................................................................2414.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................AGAAAGAAGAGAA-----C--CG--AAGAGCGCAGTG....................................................2813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................AAAA-------ATC---------GGAAAAGTAAGCT-----CAA---------------------AA------..........................................................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000
..................AACC----------------GATTTTGTCCGCTGG----------------------------------------CGAGT---......................................................................................................................................................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACAGAAAATAAAACGAAACGGAA................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............GCTAACC----------------GATTTTGTCCGCTGG----------------------------------------CGAGT---A.....................................................................................................................................................................................................................................................................................................................................................................................................2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002
.........................................TTTGTCCGCTGG----------------------------------------CGAGT---AAAAAAA-------ATC---------GG..........................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............GCTAACC----------------GATTTTGTCCGCTGG----------------------------------------CGA...........................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............AACGCTAACC----------------GATTTTGTCCGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................GT---AAAAAAA-------ATC---------GGAAAAGT....................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................CGAGT---AAAAAAA-------ATC---------GGAAAAG.....................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................ATTTTGTCCGCTGG----------------------------------------CGAGT---......................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000
....................................................................................................................................................................................................................................................GGAGGCTTC------TTCGGTG-CTTTTTT-T.......................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................AGCGG-TGA--------AAAA----------------------------------------------AGTGACGTG............................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................TCGTCATCCAGCGG-TGA--------AAAA----------------------------------------------AGTGA................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................A----------------------------------------------AGTGACGTGACAT-GAAA-GCA...............................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000
......................................GATTTTGTCCGCTGG----------------------------------------CGAG..........................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
.............ACGCTAACC----------------GATTTTGTCCGCTGG----------------------------------------..............................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................AACC----------------GATTTTGTCCGCTGG----------------------------------------CGAG..........................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................ACAT-GAAA-GCAA-----AGAAAGA..................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................A-GCAA-----AGAAAGAAGAGAA-----C--CG--AAGAGC..........................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................GTTT-----------------TTGGAGGCTTC------TTCGGT..................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................AAA----------------------------------------------AGTGACGTGACAT-GAAA-GCA...............................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000
..............................................CCGCTGG----------------------------------------CGAGT---AAAAAAA-------ATC---------G...........................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................AAGAGAA-----C--CG--AAGAGCGCAGTGA---------A.........................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............GCTAACC----------------GATTTTGTCCGCTGG----------------------------------------..............................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGAAACGGAAAGCAAAG.........2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................AGAA-----C--CG--AAGAGCGCAGTGA---------AAAACA....................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................TAACC----------------GATTTTGTCCGCTGG----------------------------------------CGAGT---......................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................CTAACC----------------GATTTTGTCCGCTGG----------------------------------------CGAGT---......................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001
.....................................................................................................................................................................................................................................................................................................................................................................................................AAA-GCAA-----AGAAAGAAGAG..............................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000
................CTAACC----------------GATTTTGTCCGCTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000
................................................................................................GT---AAAAAAA-------ATC---------GGAAAAGTAAGCT-----..........................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................A----------------------------------------------AGTGACGTGACAT-GAAA-G.................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
.................TAACC----------------GATTTTGTCCGCTGG----------------------------------------CGA...........................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................GCCCTCGTCATCCAGCGG-..................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................CC----------------GATTTTGTCCGCTGG----------------------------------------CGAG..........................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................CTTC------TTCGGTG-CTTTTTT-TTTT....................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................A-----C--CG--AAGAGCGCAGTGA---------A.........................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................ATTAATGTTT-----------------TTGGAGGCTTC------TTCGG...................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000
..................AACC----------------GATTTTGTCCGCTGG----------------------------------------CGAGT---A.....................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................AAAAAAA-------ATC---------GGAAAAGTAAGC................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
TCCGC-------AACGCTAACC----------------GATTTTGTCCGCT-G----------------------------------------CGAGT---AAAAAAA--------TT---------AGAAAAGTAAGCT-----AAA---------------------AAAAAAAAAAAAATA---ACAGCTA-----AC------ATACGCCCATTAATGTTT-----------------TTGGAGGCTTC------TTCGGTG---CTTTTTT-TTG------GGCGAAACGCCTTCGTCATCCAGCGG-TGA--------AAAA----------------------------------------------AGTGACGTGACAT-GAAG-GCAAAGCAAAGAAAGAAGAGAA-----G--CA--GAGAGCGCAGTGA---------AAAACAGAAAATAAAACGAAACGGAAAGCGAAAAT-AGCAAASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..........................................TTGTCCGCT-G----------------------------------------CGAGT---AAAAAAA--------TT---------A...........................................................................................................................................................................................................................................................................................................................................................................2511.0011000000
.....................................................................................................................................................................................................................................................................CGGTG---CTTTTTT-TTG------GGC..........................................................................................................................................................................................................1811.0010000010
..............CGCTAACC----------------GATTTTGTCCGCT-G----------------------------------------C.............................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................A-----G--CA--GAGAGCGCAGTGG---------G.........................................1880.1310000010
droYak3
TCCGC-------AACGCTAACC----------------GATTTTGTCCGCT-G----------------------------------------CGAGT---AAAAAAAT-------TC---------GGAAAAGTAAGCC-----CAA--------------------CAAAAAAAGAAAAAAA---ACAGCTA-----AC------ATACGCCCATTAATGTTT-----------------TTGGAGGCTTC------TTCGGGG---TTTTTT--TTG------GGCGAAACGCCTTCGTCATCCAGCGG-TGA--------AAAA----------------------------------------------AGTGACGTGACAT-GAAG-GCAAAGCAAAGAAAGAAGAGAA-----G--CA--GAGAGCGCAGTGA---------AAAACAGAAAATAAAACGAAACGGAAAGCGAAGCA--GAAAASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...............GCTAACC----------------GATTTTGTCCGCT-G----------------------------------------CGA...........................................................................................................................................................................................................................................................................................................................................................................................................2412.00202000000000
......................................GATTTTGTCCGCT-G----------------------------------------CGAGT---AAAAA.................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000010000
.....................C----------------GATTTTGTCCGCT-G----------------------------------------CGAGT---AAAAA.................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000000001
droEug1
TCCGC-------AACGCTAAGC----------------GATTTTGCCCGCA-C----------------------------------------CGAGT---GAAAAAA--------TC---------GGCAAAGTAAGCC-----CCA---------------------A--------AAAATA---A--TTTA-----TA------ATACGCCCATTAATGTTTT-AG--------------TGGTGGCTTC------ATTTGTTTCTTTTTT-TTTGG------GGCGAAACGCCTTCGTCATCCAGTGC-TGA--------AAAA----------------------------------------------AGTGACGTGACAT-GAAG-GCAA------GAAAGAA---------GGCGCA--AAGAGCGCAGTGA---------AAAACAGAAAATAAAACGAAACGGAAAGCGAAACA--GAAAASizeHit CountTotal NormTotal
No Reads
droBia1
TCCGC-------AACGCCTGGC----------------GACTTCGACCGCT-G----------------------------------------CGAGT---GAAAA---------ATC---------GGAAAAGTAAGCC-----CCC---------------------A-------GAAGAGCTCAGCAGCTCTG--CACA-----ATACGCCCATTAATGTTT------------GGTTTTCGGTGGCTTC------TTCGGTG---TTT-----TTG------GGCGAAACGCCTTCGTCATCCAGCGGGTGA---------AAA----------------------------------------------AGTGACGTGACAT-GAAG-GCAA------GAAAGAAGAGAA-----GCGCA--GAGAGCGC-GTGA---------AAAACAGAA-ATAAAACGAAACGGAAAGCGAAACA--GAAAASizeHit CountTotal NormTotal
No Reads
droTak1
TCCGC-------AACGCCAAC-----------------G-------------G----------------------------------------CGAGT---GAAAAAAT-------TG---------GGAAAAGTAAGCGAC---CCCG--------------------G-------GAAAAGT---TCGGCTC-----A-------ATACGCCCATCAATGTTTT-AG---TTTT-CGTTTTCGGTGGCTTC------TTTGGTG---TTTTTTT-TGG------GGCGAAACGCCTTCGTCATCCAGCGG-TGA--------AAAA----------------------------------------------AGTGACGTGACATCGAA-----------CGAAAGAAGAGAA-----GCGCG--GAGAGCGCGGTGA---------AAAACAGAAAATAAAACGAAACGGAAAGCGAA-CA--ACAGASizeHit CountTotal NormTotal
No Reads
droEle1
TCCGC-------AACGCTCAAC----------------GATTTTGTCCGCT-G---TAA---------------------------------CCGAGCATCGAACAAAT-CGGAAATC---------GGAGAAGTAAGCT-----CCC---------------------A-------AAAA---------------AACACATTATAATACGCCCATTAATGTTTTTAA-----------TTTCGGTGGCTTC------TTTGGTG---TCTTTTTTTTG------GGCGAAACGCCTTCGTCATCCAGCGG-TGA---------AAA----------------------------------------------AGTGACGTGACAT-GAAG-GCAA------GAAAGAA---------GGCGCAAAGAGAGCGCAGTGA---------AAAACAGAAAATAAAACGAAACAGAAAGCGAATCA--GAAAASizeHit CountTotal NormTotal
No Reads
droRho1
TCCGC-------AACGCCAAAC----------------GATTTTGTCCGCT-G---TTA---------------------------------CCGAGT---GAAAAAAT-CGGAAATC---------GGAGAAGTAAGCT-----CCA---------------------C-------AAAA---------------ACCACAATAT-GTACGCCCATTAATGTTTT-A----------GTTTTCGGTGGCTTC------TTCGGTG---TTTTTT--TTG------GGCAAAACGCCTTCGTCATCCAGCGA-TGA--------AAAA----------------------------------------------AGTGACGTGACAT-GAAG-GCAA------GAAAGAA---------GGCGCA--AAGAGCGCAGTGA---------AAAACAGAAAATAAAACGAAACAGAAAGCGATGTA--GA-AASizeHit CountTotal NormTotal
No Reads
droFic1
TCCGC-------TACGCTAAAC----------------GATTGTGACCGCT-G---TCT---------------------------------CCGTGT---GAAAAAATTCGGAAATC---------GGAAAAGTAAGCC-----TCC---------------------G---------AA---------------ACCACAATA--GTACGCCCATTAATTTCG--A----------GTTTTCGGTGGCTTC------ATTGGTG---TTTTTT--TT-------GGCGAAACGCCTTCGTCATCCAGCGG-TGAA-------AAAA----------------------------------------------AGTGACGTGACAT-GAAGAACGA------GAAAGAT---------GGCACA--AAGAGCGCAATGA---------AAAACAGAAAATAAAACGAAACAGAAAGCGAAAC--------SizeHit CountTotal NormTotal
No Reads
droKik1
TCCGG-------AACGCCAA-C----------------GATTTTCCCC--T-GCTG---CTGCCGCTGCTG---------CTGTTGGGTGCTCCGAGT---GAAAAAA-------------------AGCAAAGTAAGCTCC---CC----------------------C-------GAAA---------------ACCACA-----ATACGCCCATTAATGTTT------------G--TTTCGGTGGCTCCG-----TTTGGGG---TTT------T-------GGCGAAACGCCTTCGTCATCCAGCGG-AGAGA------AAAA----------------------------------------------AGTGACGTGACAT-GAAA-GCAA------GAA---------CGGGCGCACA--AAGAGCGAAATAAAAAACACAGAAAACAGAACATAAAGCGTAACCGAAACGGAAACCG-AAATCSizeHit CountTotal NormTotal
No Reads
droAna3
TCCAA-------AGCG-------AG------CTCCAACGATTTTCCCCACG-G---CTTCTGCTGCTGCTG---------CT--------------CT---AAAATA--------ATC---------AGAAAAGTAAGCTTC---CCCA--------------------------------------------A-----AT------ATACGCCCATTAATGTTTT------------G-TTTCGGGGG-----GCATCGCAAGTA---TTTTTTT-TTATTAGCGAACGAAACGCCTTCGTCATCCAGCAG-AGAAAA-A-AAAAAA----------------------------------------------AGTGACGTGACAT-GAAA-GCCA-----GAAAAGAAAAGAACGAGCGCACA--AAGAGTGAAATAA---------AAAACAGAACATAAAAC-------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
........................................TTTTCCCCACG-G---CTTCTGCTGCTGCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001100000
................................................ACG-G---CTTCTGCTGCTGCTG---------CT--------------CT---......................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
................................................................................CT--------------CT---AAAATA--------ATC---------AGAAAAGGC...................................................................................................................................................................................................................................................................................................................................................................2211.001010000
droBip1
TCCAC-------AGCG-------AG------CTCCAACGATTTTCCCCACG-G--------GCTGCAGCTG---------CT--------------GT---AAAATAAT-CTGAAGGC---------AAAAAAGTAAGCTGCTTCCC----------------------C-------AAAA---------------ACCACAATAT-ATACGCCCATTAATGTTT------------G--TTTCGGGGG-----GCATCGCTGGT----------------------ACGAAACGCCTTCGTCATCCAGCAAGAGAAAAAAAAAAAAA----------------------------------------------AGTGACGTGACAT-GAAA-GCCA-----GAAAAGAAAAGAACGAGCGCACA--AAGAGTGAAATAAAA-------AAAACAGAACATA--------------------------AAASizeHit CountTotal NormTotal
No Reads
dp5
TCCAGCACAACCAACGCCAGCCGAGCCAAACCACCAACCATTTTT--CACT-GCGG-----GTCGCCTCTCATCGGGATCGTGTG---TA--------------------------CTATTTAAGCATAAAAAGTAAGCAGC---CGCAAGTCGAACCCAAAGCCCCATG-------GAAA---------------AACAC------ATACGCCCATTAATGTTT------------G--TTTCG------------------GT------------TTGT--GCCAATAAAATGACTTCGTCATCTCGCGA-AGAAAA-AAATATAA----------------------------------------------AGTGACGTGACGT-GAAA-GCGA--------A---------CGAGTGCACA--AAGGCAGCAACAA---------AGA-----GCCCAAAACGGATCAGAAGCT-A--------GAASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
......................................................................CATCGGGATCGTGTG---TA--------------------------CTA....................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
...................................................................TCTCATCGGGATCGTGTG---TA--------------------------C......................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
................................................ACT-GCGG-----GTCGCCTCTCATC.................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000100000
.............................................................GTCGCCTCTCATCGGGATCGTGT.......................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000100000
droPer2
TCCAGCACAACCAACGCCAGCCGAGCCAAACCACCAACCATTTTT--CACT-GCGG-----GTCGCCTCTCATCGGGATCGTGTG---TA--------------------------CTATTTAAGCATAAAAAGTAAGCAGC---CGCAAGTCGAACCCAAAGCCCCATG-------GAAA---------------AACAC------ATACGCCCATTAATGTTT------------G--TTTCG------------------GT------------TTGT--GCCAATAAAATGACTTCGTCATCTCGCGA-AGAAAA-AAATATAA----------------------------------------------AGTGACGTGACGT-GAAA-GCGA--------A---------CGAGTGCACA--AAGGCAGCAACAA---------AGA-----GCCCAAAACGGATCAGAAGCT-A--------GAASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..................................CAACCATTTTT--CACT-GCGG-----GT............................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001001000
droWil2
TCCAT-------CAAACACTTC----------------GAATTTGTT--------------------------------------------------------------------ATT---------GTTAAAGTAAGCAAC---TACAA-------------------C-------AGCA---------------ACCA-------------CTAACAACGTTA---ATAAAGTTTGA-TTTCG------------------GTT---TGTTTTGTGCG------AATAAAACGTCTTCGTCATCTTTCTAGCGAAAG-A-AAAAAAAGTAGAAAAAAATTCGTGACGTCGACTGCGGCAGCGACTGGACAGCAGCGACGTGACAT-GAAA-GCGA------A-A---------CG--GGCACA--AAGAGTGTTT------------------------------------------AAACA--AAAAGSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.................................................................................................................................................................................................................................................................................................................................................................CTGCGGCAGCGACTGGACAGC.....................................................................................................................2111.00100010
........................................ATTTGTT--------------------------------------------------------------------ATT---------GTTAAAGT....................................................................................................................................................................................................................................................................................................................................................................1811.00100010
.........................................................................................................................................................................................................................................GTTTGA-TTTCG------------------GTT---TGTTTTGTGC....................................................................................................................................................................................................................2411.00100010

Generated: 05/19/2015 at 03:01 AM