ID:

dsi_15684

 Coordinate:

2l:16088127-16088276 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-23.1 -23.1 -23.0

Flybase annnotation

intergenic

Repeatable elements

NameClassFamilyStrand
S_DMDNATcMar-Tc1+
mature
  1. dsi_31120  2l:4897700-4897721 +
  2. dsi_31125  2l:4897739-4897760 -
  3. dsi_31273  2l:16088090-16088111 +
  4. dsi_15684  2l:16088129-16088150 -
  5. 2l:20878183-20878204 -
  6. 2r:157836-157857 +
  7. dsi_31271  3l:16275797-16275818 +
  8. dsi_31283  3l:16275836-16275857 -
  9. dsi_31283  3l:16275882-16275903 -
  10. dsi_31800  3l:22557119-22557140 +
  11. dsi_31810  3l:22570148-22570169 +
  12. dsi_31089  3r:9610651-9610672 +
  13. dsi_31191  3r:10692850-10692871 +
  14. dsi_31204  3r:10692889-10692910 -
  15. 3r:15599422-15599443 +
  16. dsi_31886  4:214729-214750 -
  17. x:15110619-15110640 -
  18. dsi_31871  x:15544071-15544092 +
  19. dsi_31880  x:15544110-15544131 -
  20. dsi_31880  x:15544146-15544167 -
  21. 2l:20585563-20585584 -
  22. dsi_3715  x:19916032-19916053 -
star

Sense Strand Reads

CTCCGTTCGCTGAAACTGCCGTATTTCGCTCTACACAAAAGACATTAAAAGTAATTTTAATTAAGGACTGTTAAGTTGTAGAAAACATATTTGTGGTCTAAAATTCGTCCGGGTTCGACACCCAACAGTATAAACTCAAACAAAATTTGAAAACATTCAAATACTTACAGTATGTCAAGAAACTGTTTACACACTGTGTAATAAGTTGAATATTTCACAGTGTGTAAACAGTTTCTTGACATACTGTATC
**************************************************..............((((.....((((.((((..(((....)))..)))).)))).))))((((.....)))).....................(((((((....)))))))...((((((.(((.((.......)).))).))))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total O002
Head
 SRR553487
NRT_0-2 hours eggs
 O001
Testis
 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 M025
embryo
 SRR902008
ovaries
 M023
head
 SRR618934
dsim w501 ovaries
 M024
male body		 SRR902009
testis
 GSM343915
embryo
 M053
female body
................................................................................................................................................................................AAGAAACTGTTTACACACTGTG.................................................... 22 0 20 22.95 459 0 137 64 0 124 112 5 5 1 3 1 3 3 1
...............................................................................................................................................................................CAAGAAACTGTTTACACACTGT..................................................... 22 0 20 18.70 374 0 0 30 69 67 37 120 0 43 2 4 0 0 2
....................................................................................................................................................................................AACTGTTTACACACTGTGCAATAAGT............................................ 26 1 9 14.67 132 0 91 0 28 0 6 0 7 0 0 0 0 0 0
......................................................................................................................................................................................................................TCACAGTGTGTAAACAGTTTCT.............. 22 0 14 9.86 138 70 0 63 0 0 2 0 0 0 1 0 0 0 2
.....................................................................................................................................................................................................................TTCACAGTGTGTAAACAGTTTC............... 22 0 14 7.50 105 35 0 63 0 0 0 0 1 0 3 0 0 0 3
....................................................................................................................................................................................AACTGTTTACACACTGTGCAATAAG............................................. 25 1 9 6.33 57 0 31 0 24 0 1 0 1 0 0 0 0 0 0
................................................................................................................................................................................AAGAAACTGTTTACACACTGT..................................................... 21 0 20 4.40 88 0 11 0 14 7 13 0 0 31 2 10 0 0 0
.................................................................................................................................................................................AGAAACTGTTTACACACTGTGT................................................... 22 0 9 3.33 30 0 8 0 5 5 8 0 1 0 1 0 2 0 0
.........................................................................................................................................................................................................................CAGTGTGTAAACAGTTTCTTGAC.......... 23 0 20 3.15 63 27 0 36 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................TCACAGTGTGTAAACAGT.................. 18 0 14 3.07 43 28 0 14 0 0 0 0 0 0 1 0 0 0 0
.......................................................................................................................................................................................TGTTTACACACTGTGCAATAAGTTGAA........................................ 27 1 13 2.85 37 0 1 0 0 2 8 0 26 0 0 0 0 0 0
.........................................................................................................................................................................................................................CAGTGTGTAAACAGTTTCTTG............ 21 0 20 2.55 51 44 0 0 0 0 0 0 0 0 0 0 0 7 0
................................................................................................................................................................................AAGAAACTGTTTACACACT....................................................... 19 0 20 2.40 48 48 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................CAAGAAACTGTTTACACACTGG..................................................... 22 1 20 2.35 47 0 0 0 0 0 0 45 0 0 0 2 0 0 0
.....................................................................................................................................................................................................................TTCACAGTGTGTAAACAGT.................. 19 0 14 2.14 30 14 0 14 0 0 0 0 0 0 2 0 0 0 0
.......................................................................................................................................................................................TGTTTACACACTGTGCAATAAGTTGAAT....................................... 28 1 13 2.08 27 0 0 0 0 0 0 0 27 0 0 0 0 0 0
...............................................................................................................................................................................CAAGAAACTGTTTACACAC........................................................ 19 0 20 2.05 41 36 0 0 0 0 0 4 0 1 0 0 0 0 0
......................................................................................................................................................................................................................TCACAGTGTGTAAACAGTT................. 19 0 14 2.00 28 21 0 7 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................CAAGAAACTGTTTACACACTG...................................................... 21 0 20 1.95 39 11 0 0 7 7 3 1 0 3 0 2 2 0 3
.........................................................................................................................................................................................................................CAGTGTGTAAACAGTTTCT.............. 19 0 20 1.80 36 36 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................AGAAACTGTTTACACACTGTG.................................................... 21 0 20 1.70 34 18 4 0 0 1 0 0 2 0 0 0 9 0 0
..............................................................................................................................................................................TCAAGAAACTGTTTACACACT....................................................... 21 0 20 1.65 33 22 0 0 5 4 2 0 0 0 0 0 0 0 0
...............................................................................................................................................................................CAAGAAACTGTTTACACACT....................................................... 20 0 20 1.45 29 24 1 0 0 1 2 0 0 1 0 0 0 0 0
..........................................................................................................................................................................................................................AGTGTGTAAACAGTTTCTTGAC.......... 22 0 20 1.40 28 0 0 20 0 0 0 2 0 1 0 0 0 5 0
..................................................................................................................................................................................GAAACTGTTTACACACTGTGTA.................................................. 22 0 9 1.33 12 0 0 0 7 3 0 2 0 0 0 0 0 0 0
................................................................................................................................................................................AAGAAACTGTTTACACAC........................................................ 18 0 20 1.25 25 0 0 24 0 0 0 0 0 1 0 0 0 0 0
................................................................................................................................................................................AAGAAACTGTTTACACACTG...................................................... 20 0 20 1.20 24 0 0 22 0 0 1 1 0 0 0 0 0 0 0
..............................................................................................................................................................................TCAAGAAACTGTTTACACACTG...................................................... 22 0 20 1.20 24 0 7 0 5 6 3 0 0 0 0 0 1 1 1
.....................................................................................................................................................................................................................TTCACAGTGTGTAAACAGTT................. 20 0 14 1.00 14 0 0 14 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................GGTTCGACACCCACCAGGA........................................................................................................................ 19 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................CACAGTGTGTAAACAGTTTCT.............. 21 0 20 0.90 18 0 0 18 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................TATTTCACAGTGTGTAAACAG................... 21 0 12 0.83 10 5 0 5 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................AAGAAACTGTTTACACACTGTGT................................................... 23 0 9 0.78 7 0 1 0 5 0 0 0 0 0 0 0 0 0 1
...............................................................................................................................................................................CAAGAAACTGTTTACACACTGTG.................................................... 23 0 20 0.75 15 0 0 0 0 12 3 0 0 0 0 0 0 0 0
..............................................................................................................................................................................TCAAGAAACTGTTTACACACTGTG.................................................... 24 0 20 0.70 14 14 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................TCAAGAAACTGTTTACACAC........................................................ 20 0 20 0.65 13 11 1 0 0 0 0 1 0 0 0 0 0 0 0
....................................................................................................................................................................................AACTGTTTACACACTGTGCAATAA.............................................. 24 1 10 0.60 6 0 5 0 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................AGTGTGTAAACAGTTTCTT............. 19 0 20 0.60 12 12 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................CAGTGTGTAAACAGTTTC............... 18 0 20 0.60 12 12 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................TATTTCACAGTGTGTAAACAGT.................. 22 0 12 0.58 7 5 0 0 0 0 0 1 0 0 0 0 0 1 0
........................................................................................................................................................................................................................ACAGTGTGTAAACAGTTTC............... 19 0 20 0.55 11 0 0 11 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................ACAGTGTGTAAACAGTTTCTTG............ 22 0 20 0.50 10 10 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................TCACAGTGTGTAAACAGTTT................ 20 0 14 0.50 7 0 0 7 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................CACAGTGTGTAAACAGTT................. 18 0 20 0.50 10 10 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................TTCACAGTGTGTAAACAGTTT................ 21 0 14 0.50 7 0 0 7 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................GTGTGTAAACAGTTTCTTGAC.......... 21 0 20 0.50 10 10 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................AACTGTTTACACACTGTGCAATA............................................... 23 1 20 0.50 10 0 6 0 4 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................TGTTTACACACTGTGCAATAAGTTGAAA....................................... 28 2 13 0.46 6 0 0 0 0 0 1 0 5 0 0 0 0 0 0
.......................................................................................................................................................................................................................CACAGTGTGTAAACAGTTTCTT............. 22 0 20 0.45 9 8 0 0 0 0 0 0 0 0 1 0 0 0 0
...................................................................................................................................................................................AAACTGTTTACACACTGTGTA.................................................. 21 0 9 0.44 4 0 1 0 1 1 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................TTCACAGTGTGTAAACAG................... 18 0 14 0.43 6 0 0 0 0 0 0 0 0 0 6 0 0 0 0
.............................................................................................................................................................................GTCAAGAAACTGTTTACACACT....................................................... 22 0 20 0.40 8 0 0 0 0 0 0 0 0 7 0 1 0 0 0
...................................................................................................................................................................................AAACTGTTTACACACTGTGCAATAAGT............................................ 27 1 8 0.38 3 0 0 0 0 1 0 0 2 0 0 0 0 0 0
...............................................................................................................................................................................CAGGAAACTGTTTACACACTGT..................................................... 22 1 20 0.35 7 0 0 0 0 1 0 4 0 2 0 0 0 0 0
............................................................TTAAAGACGGTTAAGTAGTAG......................................................................................................................................................................... 21 3 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................TCAAGAAACTGTTTACACACTGT..................................................... 23 0 20 0.30 6 0 1 0 2 2 0 1 0 0 0 0 0 0 0
.......................................................................................................................................................................................TGTTTACACACTGTGCAATAAGTTGAAAA...................................... 29 2 7 0.29 2 0 0 0 0 0 0 0 1 0 0 0 1 0 0
.................................................AGTAATTTTTACTAAGGAC...................................................................................................................................................................................... 19 2 4 0.25 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0
................................................................................................................................................................................AAGAAACTGTTTACACACTGG..................................................... 21 1 20 0.25 5 0 0 0 0 0 0 2 0 3 0 0 0 0 0
....................................AAAAGACGTTAGAAGTAAAT.................................................................................................................................................................................................. 20 3 20 0.25 5 0 3 0 0 0 2 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................TTACACACTGTGCAATAAGTTGAA........................................ 24 1 17 0.24 4 0 0 0 0 0 0 0 4 0 0 0 0 0 0
.......................................................................................................................................................................................TGTTTACACACTGTGCAATAAGTTGA......................................... 26 1 13 0.23 3 0 0 0 0 0 2 0 0 0 0 0 1 0 0
.......................................................................................................................................................................................TGTTTACACACTGTGCAATAAGTTGAT........................................ 27 2 13 0.23 3 0 0 0 0 0 0 0 3 0 0 0 0 0 0
...............................................................................................................................................................................CAAGAAACTGTTTACACACTGTGT................................................... 24 0 9 0.22 2 0 1 0 0 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................AGAAACTGTTTACACACTGT..................................................... 20 0 20 0.20 4 0 3 0 0 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................AACTGTTTACACACTGTGTAAT................................................ 22 0 10 0.20 2 0 0 0 0 0 0 0 0 0 0 0 0 2 0
...............................................................................................................................................................................TAAGAAACTGTTTACACACTGT..................................................... 22 1 20 0.15 3 0 0 0 0 3 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................AAGAAACTGTTTACACACTGTGC................................................... 23 1 20 0.15 3 0 0 0 1 2 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................TTTACACACTGTGTAATAAGTTGAATATT.................................... 29 0 8 0.13 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
...............................................................................................................................................................................................................................GTAAACAGTTTCTTGACATACTGTAT. 26 0 16 0.13 2 0 0 0 0 0 0 0 2 0 0 0 0 0 0
......................................................................................................................................................................................................................TCACAGTGTGTAAGCGGTTTCT.............. 22 2 17 0.12 2 0 0 0 0 0 0 0 0 0 0 0 0 0 2
............................................................................................................................................................................TGTCAAGAAACTGTTTACACACTGTG.................................................... 26 0 17 0.12 2 0 0 0 2 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................TGTCAAGAAACTGTTTACACACTGTGCAA................................................. 29 1 17 0.12 2 0 0 0 1 0 1 0 0 0 0 0 0 0 0
................................................................................................................................................................................AAGAAACTGTTTACACACTGTGTT.................................................. 24 1 9 0.11 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................ACTGTTTACACACTGTGCAATAAGT............................................ 25 1 9 0.11 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
....................................................................................................................................................................................AACTGTTTACACACTGTGCAATAAGA............................................ 26 2 9 0.11 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
.....................................................................................................................................................................................ACTGTTTACACACTGTGCAATAAGTTA.......................................... 27 2 9 0.11 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
...........................................................................................................................................................................................TACACACTGTGCAATAAGTTGAAT....................................... 24 1 18 0.11 2 0 0 0 0 0 0 0 2 0 0 0 0 0 0
..........................................................................................................................................................................................TTACATACTGTGTAATAAGTTGA......................................... 23 1 9 0.11 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
....................................................................................................................................................................................AACTGTTTACACACTGTGCATTAAGT............................................ 26 2 9 0.11 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................AGAAACTGTTTACATACTGTGT................................................... 22 1 9 0.11 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................ACCTGTTTACACACTGTGCAATAAGT............................................ 26 2 9 0.11 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................TTGCACACTGTGTAATAAGTTGAATAT..................................... 27 1 9 0.11 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0
....................................................................................................................................................................................AACTGTTTACACACTGTGCAATAAGTT........................................... 27 1 9 0.11 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
................................................................................................................................................................................AAGAAACTGTTTACACACTGTGTA.................................................. 24 0 9 0.11 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1
..........................................................................................................................................................................................TTACACACTGTGTAATAAGTTGAATATT.................................... 28 0 9 0.11 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0
.................................................................................................................................................................................AGAAACTGTTTACACACTGTGCAATA............................................... 26 1 19 0.11 2 0 0 0 1 0 0 0 1 0 0 0 0 0 0
..........................................................................................................................................................................................................................AGTGTGTAAACAGTTTCTTG............ 20 0 20 0.10 2 0 0 0 0 0 0 0 0 0 1 0 0 0 1
.......................................................................................................................................................................CAGTATGTCAAGAAACTGTT............................................................... 20 0 20 0.10 2 0 0 0 0 0 0 0 0 0 2 0 0 0 0
....................................................................................................................................................................................TACTGTTTACACACTGTGCAATAAGT............................................ 26 2 10 0.10 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................AACTGTTTACACACTGTGCAATAAC............................................. 25 2 10 0.10 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................AACTGTTTACACACTGTGCAAT................................................ 22 1 20 0.10 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................AAGAAACTGTTTACACA......................................................... 17 0 20 0.10 2 0 0 0 0 0 1 0 0 0 1 0 0 0 0
.................................................................................................................................................................................AGAAACTGTTTACACACTG...................................................... 19 0 20 0.10 2 0 1 0 0 0 0 1 0 0 0 0 0 0 0
................................................................................................................................................................................AAGAAACTGTATACACACTGTGTT.................................................. 24 2 10 0.10 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................TGCACAGTGTGTAAACAGTTTCTTGA........... 26 1 20 0.10 2 0 1 0 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................GTAAACAGTTTCTTGACATACTGTA.. 25 0 20 0.10 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................TCAAGAAACTGTTTACACACTGTGCAA................................................. 27 1 20 0.10 2 0 0 0 0 1 1 0 0 0 0 0 0 0 0
................................................................................................................................................................................AATAAACTGTTTACACACTGTG.................................................... 22 1 20 0.10 2 0 0 0 1 1 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................TGTCAAGAAACTGTTTACACACT....................................................... 23 0 20 0.10 2 0 0 0 0 0 0 0 0 2 0 0 0 0 0
...............................................................................................................................................................................CAGGAAACTGTTGACACACTGT..................................................... 22 2 20 0.10 2 0 0 0 0 0 0 0 0 1 0 1 0 0 0
..........................................................................................................................................................................................................................AGTGTGTAAACGGTTTCTTGAC.......... 22 1 20 0.10 2 0 0 0 0 0 0 2 0 0 0 0 0 0 0
................................................................................................................................................................................AAGAAACTGTATACACACTGTGT................................................... 23 1 10 0.10 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................TTCACAGTGTGTAAACAGTTTCTTGACA......... 28 0 11 0.09 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1
...................................................................................................................................................................................................................ATTTCACAGTGTGTAAACAGTT................. 22 0 12 0.08 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................................TCCGGGTTCGTCAGTCAAC............................................................................................................................ 19 3 12 0.08 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
......................................................................................................................................................................................ATGTTTACACACTGTGCAATAAGTTGAAA....................................... 29 3 13 0.08 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
.......................................................................................................................................................................................TGTTTACACACTGTGCAATAAGTTG.......................................... 25 1 13 0.08 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
.......................................................................................................................................................................................TGTTTACACACTGTGCAATAAGTT........................................... 24 1 13 0.08 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................TGTTTACACACTGTGCAATAAGTTGGAA....................................... 28 3 13 0.08 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
......................................................................................................................................................................................................................TCACAGTGTGTAAACAG................... 17 0 14 0.07 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0
...................................................................................................................................................................................................................ATTTCACAGTGTGTAAGCAGTT................. 22 1 14 0.07 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................GTTTACACACTGTGCAATAAGTTGAA........................................ 26 1 14 0.07 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
........................................................................AAGTTGGAGAACACATCTTTG............................................................................................................................................................. 21 3 14 0.07 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0
.....................................................................GTTAAGTCGTAGAAA...................................................................................................................................................................... 15 1 15 0.07 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................TCACAGTGTGTAAGCAGTTTCT.............. 22 1 16 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1
..................................................................................................................................................................................................................TATTTCACAGTGTGTAAAC..................... 19 0 16 0.06 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0
.....................................................................................................................................................................................................................TGCACAGTGTGTAAACAGTTTCTTGACA......... 28 1 17 0.06 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
....................................................................................................................................................................................................................TTCCACAGTCTGTAAACAGTTTCTTGACAA........ 30 3 17 0.06 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................TATGTCAAGAAACTGTTTACACACTGTGCAA................................................. 31 1 17 0.06 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................CACAGTGTGTAAACAGTTTCTTGAC.......... 25 0 18 0.06 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
...............................................................................................................................................................................CAAGAAACTGTTTACACACTGTGCAATA............................................... 28 1 19 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................TGTCAAGAAACTGTTTACACACTGT..................................................... 25 0 19 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................AAGAAACTGTTTACACACTGTGCAATA............................................... 27 1 19 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................TATGTCAAGAAACTGTTTACACACTGT..................................................... 27 0 19 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................TACAGTATGTCAGGAAACT.................................................................. 19 1 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................AAGAAACTGTTTACAAACTGTG.................................................... 22 1 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.........................................................................................................................................................................GTATGTCAAGAAACTGTT............................................................... 18 0 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0
............................................................................................................................................................................................................................TGTGTAAACAGTTTCTTGACATA....... 23 0 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................................CAAGAAACTGTTTACACA......................................................... 18 0 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0
................................................................................................................................................................................AAGAAACTGTTTACACACTCTT.................................................... 22 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0
.............................................................................................................................................................................GTCAAGAAACTGTTTACACAC........................................................ 21 0 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0
..................................................................................................................................................................................AAAACTGTTTACACACTGTG.................................................... 20 1 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................CAAGAAACTGTTTACACACC....................................................... 20 1 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
...............................................................................................................................................................................CAAGAAACTGTGTACACACTGT..................................................... 22 1 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................AGTGTGTAAACAGTTTCTTTAC.......... 22 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0
...............................................................................................................................................................................CGGGAAACTGTTTGCACACTGT..................................................... 22 3 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0
................................................................................................................................................................................AAGAAACTGTTTACACATTGTG.................................................... 22 1 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
...............................................................................................................................................................................CGGGAAACTGTTTACACACTGT..................................................... 22 2 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0
................................................................................................................................................................................AAGAAACTGTTTACACGCTGTG.................................................... 22 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................AAGAAACTGTTTTCACACTGTG.................................................... 22 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................GTGTAAACAGTTTCTTG............ 17 0 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0
....................................AAAAGACGTTAGAAGTA..................................................................................................................................................................................................... 17 2 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................TGTCAAGAAACTGTTTACACACTGG..................................................... 25 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0
............................................................................................................................................................................TGTCAAGAAACTGTTTACACAC........................................................ 22 0 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0
...............................................................................................................................................................................CAAGAGACTGTTGACACACTGG..................................................... 22 3 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0
...............................................................................................................................................................................CAAGAAACGGTTTACACACTGT..................................................... 22 1 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
...........................................................................................................................................................................ATGTCAAGAAACTGTTTACACACT....................................................... 24 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1
..................................................................................................................................................................................GAAACTGTTTACACACTGT..................................................... 19 0 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
...............................................................................................................................................................................CAAGAAACTGTTTACACACTGTT.................................................... 23 1 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................ATGTCAAGAAACTGTTTACACA......................................................... 22 0 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................AGGAAACTGTTTACACACTGTG.................................................... 22 1 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................CAGTGTGTAAACAGGTTCTTG............ 21 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0
..........................................................................................................................................................................TATGTCAAGAAACTGTTTAC............................................................ 20 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
............................................................................TGTAGAAAACATGTT............................................................................................................................................................... 15 1 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0
...............................................................................................................................................................................CAAGAAACCGTTTACACACTGT..................................................... 22 1 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
................................................................................................................................................................................AAGAAACTGTTGACACACTGTG.................................................... 22 1 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................GTTTGTAAACAGTTTCTTGAC.......... 21 1 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0
................................................................................................................................................................................AATAAACTGTTTACACACTGTGC................................................... 23 2 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................AAGAAACTGTTTAGACACTGTG.................................................... 22 1 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................GTCAAGAAACTGTTTACACACTGT..................................................... 24 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0
................................................................................................................................................................................AAGAAACTGTTTACATACTGTG.................................................... 22 1 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................................CGGGAAACTGTTGACACACTGTG.................................................... 23 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0
...............................................................................................................................................................................CAAGAGACTGTTTACACACTGT..................................................... 22 1 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................TACAGTATGTCAAGAAACTGT................................................................ 21 0 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.....................................................................................................................................................................TACAGTATGTCAGGAAACTGT................................................................ 21 1 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0
............................................................................................................................................................................TGTCAAGAGACTGTTTACACACT....................................................... 23 1 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.................................................................................................................................................................................GGAGACTGTTTACACACTGTG.................................................... 21 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0
...............................................................................................................................................................................CAAGAAACTGTTTACACACTCT..................................................... 22 1 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
...............................................................................................................................................................................CAACAAACTGTTTACACACTGT..................................................... 22 1 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
................................................................................................................................................................................GAGAAACTGTTTACACACTGTG.................................................... 22 1 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

GAGGCAAGCGACTTTGACGGCATAAAGCGAGATGTGTTTTCTGTAATTTTCATTAAAATTAATTCCTGACAATTCAACATCTTTTGTATAAACACCAGATTTTAAGCAGGCCCAAGCTGTGGGTTGTCATATTTGAGTTTGTTTTAAACTTTTGTAAGTTTATGAATGTCATACAGTTCTTTGACAAATGTGTGACACATTATTCAACTTATAAAGTGTCACACATTTGTCAAAGAACTGTATGACATAG
**************************************************..............((((.....((((.((((..(((....)))..)))).)))).))))((((.....)))).....................(((((((....)))))))...((((((.(((.((.......)).))).))))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total O002
Head
 SRR553485
Chicharo_3 day-old ovaries
 O001
Testis
 SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 M025
embryo
 M023
head
 M024
male body		 GSM343915
embryo
 SRR618934
dsim w501 ovaries
 SRR902009
testis
 SRR902008
ovaries
 M053
female body
.......................................................................................................................................................................................................................GTGTCACACATTTGTCAAAGAA............. 22 0 20 37.75 755 120 185 64 124 137 112 0 1 0 3 3 0 5 1
........................................................................................................................................................................................................................TGTCACACATTTGTCAAAGAAC............ 22 0 20 20.55 411 0 69 30 67 39 37 120 43 4 0 0 0 0 2
........................................................................................................................................................................................................................TGTCACACATTTGTCAAAGAA............. 21 0 20 5.05 101 0 14 20 7 11 13 3 31 0 0 2 0 0 0
..........................................................................................................................................................................................................................TCACACATTTGTCAAAGAA............. 19 0 20 4.80 96 48 0 48 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................GTTCTTTGACAAATGTGTGAC...................................................... 21 0 20 4.25 85 44 0 33 0 0 0 0 0 0 7 1 0 0 0
.............................................................................................................................................................................CAGTTCTTTGACAAATGTGTGAC...................................................... 23 0 20 3.15 63 27 0 36 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................GGTCACACATTTGTCAAAGAAC............ 22 1 20 2.60 52 0 0 0 0 0 0 45 5 2 0 0 0 0 0
..........................................................................................................................................................................................................................TCACACATTTGTCAAAGAACT........... 21 0 20 2.20 44 22 5 0 4 5 2 0 5 0 1 0 0 0 0
.................................................................................................................................................................................TCTTTGACAAATGTGTGAC...................................................... 19 0 20 1.80 36 36 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................CACACATTTGTCAAAGAAC............ 19 0 20 1.80 36 36 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................GTGTCACACATTTGTCAAAGA.............. 21 0 20 1.80 36 18 0 0 1 4 2 0 0 0 0 0 9 2 0
....................................................................................................................................................................................................................AAAGTGTCACACATTTGTCAAAGAACTGT......... 29 0 11 1.64 18 0 7 0 5 3 3 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................GTGTCACACATTTGTCAAAGAAC............ 23 0 20 1.60 32 0 14 0 12 3 3 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................GTCACACATTTGTCAAAGAAC............ 21 0 20 1.40 28 0 7 0 7 0 3 1 3 2 0 0 2 0 3
.........................................................................................................................................................................................................................GTCACACATTTGTCAAAGAA............. 20 0 20 1.35 27 0 0 22 0 0 1 1 0 0 0 0 3 0 0
.........................................................................................................................................................................................................................GTCACACATTTGTCAAAGAACT........... 22 0 20 1.35 27 0 0 0 6 7 3 0 0 3 1 0 1 5 1
...........................................................................................................................................................................................................................CACACATTTGTCAAAGAA............. 18 0 20 1.20 24 0 0 24 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................CTTTGACAAATGTGTGAC...................................................... 18 0 20 1.20 24 12 0 12 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................GCGCAGGCCCAAACTGTGGGT.............................................................................................................................. 21 3 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................TCTTTGACAAATGTGTGACAC.................................................... 21 0 20 0.90 18 0 0 18 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................AGTGTCACACATTTGTCAAAGAA............. 23 0 13 0.85 11 6 0 0 1 3 1 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................AGTGTCACACATTTGTCAAAGAACTGT......... 27 0 11 0.73 8 0 2 0 0 3 3 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................GTGTCACACATTTGTCAAAGAACT........... 24 0 20 0.70 14 14 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................CACACATTTGTCAAAGAACT........... 20 0 20 0.65 13 11 0 0 0 1 0 1 0 0 0 0 0 0 0
................................................................................................................................................................................TTCTTTGACAAATGTGTGA....................................................... 19 0 20 0.60 12 12 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................CTTTGACAAATGTGTGACA..................................................... 19 0 20 0.55 11 0 0 11 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................TTCTTTGACAAATGTGTGAC...................................................... 20 0 20 0.55 11 11 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................ATAACGTGTCACACATTTGTCAA................. 23 1 20 0.50 10 0 4 0 0 6 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................TTGACAAATGTGTGACAC.................................................... 18 0 20 0.50 10 10 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................CAGTTCTTTGACAAATGTGTG........................................................ 21 0 20 0.50 10 10 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................GAATGTCATACAGTTCTTTGA.................................................................. 21 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................GAGTGTCATACAGTTCT...................................................................... 17 1 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................................GCGCAGGCCCAAACTGTGGG............................................................................................................................... 20 3 2 0.50 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
................................................................................................................................................................................TTCTTTGACAAATGTGTGACAC.................................................... 22 0 20 0.45 9 8 0 0 0 0 0 0 0 0 0 1 0 0 0
......................................................................................................................................................................................................................AGTGTCACACATTTGTCAAAGAACT........... 25 0 12 0.42 5 5 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................ATAAAGTGTCACACATTTGTCAAAGAA............. 27 0 12 0.42 5 0 0 0 0 3 2 0 0 0 0 0 0 0 0
.............................................................................................................................................................................CAGTTCTTTGACAAATGTGTGA....................................................... 22 0 20 0.40 8 0 0 0 0 0 0 2 1 0 5 0 0 0 0
..........................................................................................................................................................................................................................TCACACATTTGTCAAAGAACTG.......... 22 0 20 0.40 8 0 0 0 0 0 0 0 7 1 0 0 0 0 0
........................................................................................................................................................................................................................TGTCACACATTTGTCAAAGGAC............ 22 1 20 0.35 7 0 0 0 1 0 0 4 2 0 0 0 0 0 0
..........................................................................................................................GTTGTCATATTTGCGTTTT............................................................................................................. 19 2 3 0.33 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................TGTCACACATTTGTCAAAGAACT........... 23 0 20 0.30 6 0 2 0 2 1 0 1 0 0 0 0 0 0 0
.......................................................................................................................................................................................ACAAATGTGTGACACATTA................................................ 19 0 10 0.30 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................AGTTCTTTGACAAATGTGTGAC...................................................... 22 0 20 0.30 6 0 2 0 2 0 0 0 0 0 2 0 0 0 0
........................................................................................................................................................................................................................GGTCACACATTTGTCAAAGAA............. 21 1 20 0.30 6 0 0 0 0 0 0 2 3 1 0 0 0 0 0
.....................................................................................................................................................................................TGACAAATGTGTGACACA................................................... 18 0 10 0.30 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................TAAGTGTCACACATTTGTCAAAGAACTGT......... 29 1 11 0.27 3 0 0 0 0 3 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................TCACACATTTGTCAAAGAAC............ 20 0 20 0.25 5 0 0 0 1 1 2 0 1 0 0 0 0 0 0
......................................................................................................................................................................................................................CGTGTCACACATTTGTCAAAGAA............. 23 1 20 0.25 5 0 1 0 2 1 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................TGACAAATGTGTGACACGTTATTCAACTT........................................ 29 1 9 0.22 2 0 0 0 1 0 1 0 0 0 0 0 0 0 0
.................................................................................................................................................................................TCTTTGACAAATGTGTGACACA................................................... 22 0 9 0.22 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................TGTCACACATTTGTCAAAGA.............. 20 0 20 0.20 4 0 0 0 1 3 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................TAAAGTGTCACACATTTGTCAAAGAACTGT......... 30 0 11 0.18 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................AGTGTCACACATTTGTCAAAGAACTGTA........ 28 0 11 0.18 2 0 1 0 0 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................ATAAAGTGTCACACATTTGTCAA................. 23 0 12 0.17 2 0 1 0 0 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................AGTGCCACACATTTGTCAAAGAACT........... 25 1 12 0.17 2 0 0 0 0 0 2 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................ATAAAGTGTCACACATTTGTCAAAGAACT........... 29 0 12 0.17 2 0 0 0 2 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................GTGTCACACATTTGTCAGAGAA............. 22 1 20 0.15 3 0 0 0 3 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................GTCACACATTTGTCAAAGA.............. 19 0 20 0.15 3 0 0 0 0 1 0 1 0 0 0 0 1 0 0
...............................................................................................................................................................................GTTCTTTGACAAATGTGTGACA..................................................... 22 0 20 0.15 3 0 0 0 0 0 0 0 0 0 3 0 0 0 0
........................................................................................................................................................................................................................TGTCACACATTTGTCAAAGAAT............ 22 1 20 0.15 3 0 0 0 3 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................ATTCAACTTATAAAGTGTCACACAT........................ 25 0 7 0.14 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0
......................................................................................................................................................................................................................AGTGTCACACATTTGTCAAAGA.............. 22 0 14 0.14 2 0 0 0 0 0 1 0 0 0 0 0 1 0 0
.........................AGGCAGATGTGTTTTCTGTG............................................................................................................................................................................................................. 20 3 7 0.14 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0
.........................................................................................................................................................................................................ATTCAACTTATAAAGTGTCACACATT....................... 26 0 7 0.14 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................TCAACTTATAAAGTGTCACACATTTGT.................... 27 0 8 0.13 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
.....................................................................................................................................................................................TGACAAATGTGTGACACATTAT............................................... 22 0 8 0.13 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0
....................................................................................................................................................................................................................AACGTGTCACACATTTGTCAAAGAACTGT......... 29 1 17 0.12 2 0 1 0 0 0 1 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................GTGTCACACATTTGTCAAAGAACTGT......... 26 0 17 0.12 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................ACTTATAAAGTGTCACACATTT...................... 22 0 9 0.11 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.....................................................................................................................................................................................TGACAAATGTGTGACACGTTATTCAACT......................................... 28 1 9 0.11 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................TTATAAAGTGTCACACATTTGT.................... 22 0 9 0.11 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
..................................................................................................................................................................................................................ATAACGTGTCACACATTTGTCAAAGA.............. 26 1 19 0.11 2 0 1 0 0 0 0 0 0 0 0 0 0 1 0
.............................................................................................................................................................................CAGTTCTTTGGCAAATGTGTGA....................................................... 22 1 20 0.10 2 0 0 0 0 0 0 2 0 0 0 0 0 0 0
...............................................................................................................................................................................GTTCTTTGACAAATGTGTGA....................................................... 20 0 20 0.10 2 0 0 0 0 0 0 0 0 0 0 1 0 0 1
..........................................................................................................................................................................................................................TCACACATTTGTCAAAGAACTGT......... 23 0 20 0.10 2 0 0 0 0 0 0 0 2 0 0 0 0 0 0
.......................................................................................................................................................................................................................GTGTCACACATTTGTCAAATAA............. 22 1 20 0.10 2 0 1 0 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................AGTTCTTTGACAAATGTGTGACACGT.................................................. 26 1 20 0.10 2 0 1 0 0 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................ATGTCATACAGTTCTTTGACAAATG............................................................ 25 0 20 0.10 2 0 0 0 0 2 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................AACGTGTCACACATTTGTCAAAGAACT........... 27 1 20 0.10 2 0 0 0 1 0 1 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................CGTGTCACACATTTGTCAAAGAAC............ 24 1 20 0.10 2 0 0 0 0 2 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................CAAGTTTAGGAAGGTCATA............................................................................. 19 3 20 0.10 2 0 0 0 0 0 0 0 0 2 0 0 0 0 0
...................................................................................................................................................................................................................................TGTCAAAGAACTGTATGACAT.. 21 0 20 0.10 2 0 0 0 0 0 0 0 1 1 0 0 0 0 0
...................................................................................................................................................................................................................................TGTCAAAGAACTGTATGACATA. 22 0 20 0.10 2 0 0 0 0 0 0 2 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................TTGTCACACATTTGTCAAAGAAC............ 23 1 20 0.10 2 0 1 0 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................TGTCACACATTTGTCAAAC............... 19 1 20 0.10 2 0 0 0 0 0 0 0 2 0 0 0 0 0 0
...................................................................................................................................................................................................................TAACGTGTCACACATTTGTCAA................. 22 1 20 0.10 2 0 0 0 0 2 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................ACACATTTGTCAAAGAA............. 17 0 20 0.10 2 0 0 0 0 0 1 0 0 0 0 1 0 0 0
..................................................................................................................................................................................................................................TTGTCAAAGAACTGTATGAC.... 20 0 20 0.10 2 0 0 0 0 0 0 0 0 0 0 2 0 0 0
..........................................................................................................................................................................ATACAGTTCTTTGACAAATGTGT......................................................... 23 0 20 0.10 2 0 0 0 0 0 1 0 0 0 0 0 0 1 0
.....................................................................................................................................................................................................................AAGTGTCACACATTTGTCAAAGAACTGT......... 28 0 11 0.09 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................AGTGTCACACATTTGTCAAAGAACTGTAT....... 29 0 11 0.09 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................TAGTGTCACACATTTGTCAAAGAACTGTA........ 29 1 11 0.09 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................AGTGCCACACATTTGTCAAAGAACTGTTT....... 29 2 11 0.09 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................ATAAAGTGTCACACATTTGTC................... 21 0 12 0.08 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................AAAGTGTCACACATTTGTCAAAGAACTG.......... 28 0 12 0.08 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................ATAAAGTGTCACACATTTGTCAAA................ 24 0 12 0.08 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................AAAGTGTCACACATTTGTCAAAGAACT........... 27 0 12 0.08 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................TAAAGTGTCACACATTTGTCAAAGAACT........... 28 0 12 0.08 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................ATAAAGTGTCACACATTTGTCAAAGAAC............ 28 0 12 0.08 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................AAAGTGCCACACATTTGTCAAAGAACT........... 27 1 12 0.08 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................AAGTGTCACACATTTGTCAAAGAACTG.......... 27 0 12 0.08 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................AGTGTCACACATTTGTCAAAGAAC............ 24 0 13 0.08 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................AGTGTCACACATTTGTCAA................. 19 0 14 0.07 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................ACAGTTCTTTGACAAATGTGTGACACGT.................................................. 28 1 17 0.06 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0
...........................................................................................................................................................................AACAGTTCTTTGACAAATGTCTGACACCTT................................................. 30 3 17 0.06 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................AACGTGTCACACATTTGTCAAAGAACTGTAT....... 31 1 17 0.06 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................TGCAATTTTAAGAATGTCAT.............................................................................. 20 3 17 0.06 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0
......................................................................................................................................................................................................................AGTGTCACACATTTGT.................... 16 0 18 0.06 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................GTGTGACACGTTATTCAACTT........................................ 21 1 18 0.06 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................CAGTTCTTTGACAAATGTGTGACAC.................................................... 25 0 18 0.06 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
........................................................................................................................................................................................................................TGTCACACATTTGTCAAAGAACTGT......... 25 0 19 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................TGTCACACATTTGTCAAAGAACTGTAT....... 27 0 19 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................ATAACGTGTCACACATTTGTCAAAGAA............. 27 1 19 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................ATAACGTGTCACACATTTGTCAAAGAAC............ 28 1 19 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................GTGTCATACATTTGTCAAAGAA............. 22 1 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................TGTCACACATTTGTCAGAGAAC............ 22 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................GTGTCGCACATTTGTCAAAGAA............. 22 1 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................TCTCACACATTTGTCAAAGAAC............ 22 1 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
........................................................................................................................................................................................................................TGTCACACATTTGTCAAACAAC............ 22 1 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................TCACACATTTGTCAAAGAACTGTA........ 24 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1
........................................................................................................................................................................................................................TGTCACACATTTGGCAAAGAAC............ 22 1 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.............................................................................................................................................................................CAGTTCTTTGACAAATGTTTG........................................................ 21 1 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
......................................................................................................................................................................................................................CGTGTCACACATTTGTCAAATAA............. 23 2 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
...........................GCAGATGTATTTTCTGTAA............................................................................................................................................................................................................ 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0
..........................................................................................................................................................................................................................TCACACATTTGTCAGAGAACTGT......... 23 1 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
.......................................................................................................................................................................................................................TTCTCACACATTTGTCAAAGAA............. 22 2 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0
........................................................................................................................................................................................................................TGTCACACATTTGTCAAAG............... 19 0 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................GTGTCACACTTTTGTCAAAGAA............. 22 1 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................TGTCACACATTTGTAAAAGAAC............ 22 1 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.......................................................................................................................................................................................................................GTGTCACACATTTGTCAAAGGA............. 22 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................TGTCACACATTTGTCAAAGAACTG.......... 24 0 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0
........................................................................................................................................................................................................................GGTCACACATTTGTCAAAGAACTGT......... 25 1 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.......................................................................................................................................................................................................................GTGTTACACATTTGTCAAAGAAC............ 23 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................GTGTCACACAGTTGTCAAAGAA............. 22 1 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................TGTCACACATTTGTCAGAGGAC............ 22 2 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
.......................................................................................................................................................................................................................GTGTCACACATTTGTCAAAA............... 20 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................AGTTTAGGAAGGTCATACG........................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0
.....................................................................................................................................................................................................................................TCAAAGGACTGTATGACAT.. 19 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................GTTCTTTGACAAATGTG.......................................................... 17 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0
.......................................................................................................................................................................................................................GTGTCAGACATTTGTCAAAGA.............. 21 1 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................TGTCACACATGTGTCAAAGAAC............ 22 1 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................TGTCACACATTTGTCAAA................ 18 0 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................GTGTCACACAGTTGTCAAAGGGC............ 23 3 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0
...................................................................................................................................................................................................................................TGTCAAAGGACTGTATGACAT.. 21 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0
........................................................................................................................................................................................................................GGTCACACAGTTGTCAGAGAAC............ 22 3 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
.......................................................................................................................................................................................................................GTGTCACACATTTGTCAAAGAG............. 22 1 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................CACACATTTGTCAAAGAACTGT......... 22 0 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
............................................................................................................................................................................................................................ACACATTTGTCAAAGAACTGTA........ 22 0 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................TTGACAAATGTGTGAC...................................................... 16 0 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................GTCAAAGAACTGTATGACATA. 21 0 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.......................................................................................................................................................ATGGAAGTTTCTGAATGTC................................................................................ 19 3 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................CATTTGTCAAAGAACTGTAT....... 20 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................TGTCACACAGTTGTCAAAGAAC............ 22 1 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
..................................................................................................................................................................................................................................TTGTCAAAGAACTGTATG...... 18 0 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0
........................................................................................................................................................................................................................TGTCACACATTTGTCAAAGGGC............ 22 2 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
...............................................................................................................................................................................GTTCTTGGACAAATGTGTGAC...................................................... 21 1 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0
...........................................................................................................................................................................................................................CACACATTTGTCAAAGAACTG.......... 21 0 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
........................................................................................................................................................................................................................TGTCACACGTTTGTCAAAGGGC............ 22 3 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2l:16088077-16088326 - dsi_15684 CTCCGTTCGCTGAAACTGCCGTATTT-CGCTCTACACAA-AAGACATTA-AAAGTAATTTTAATTAAGGACTGTTAAGTTGTAGAAA-----------------ACATATT----------------------TGTGGTCTAAAATTC-------------G-TCCGGGTTCGACACCCAACAGTATAAAC-----------------------------------------------------------------------------------------------------------------------------TCAAACAAAATTTGAAAACATTCA-------------------AATACTTACAGTATGTCAAGAAACTGTTTACACACTGTGTAATAAGTT-GAATATTTCACAGTGTG----------------------TAAACAGTTTCTTGACATACTGTATC
droSec2 scaffold_7:176405-176645 - dse_1757 CTCCGTTCGCTGAAACTGCCGTATTT-CGCTCTACACAA-AAGACATTA-AAAGTAATTTTAATTAAGGACTGTTAAGTTGTAG---T---------------------------------------------TGTGATCTAAAATTC-------------G-TCCGGGTTCGACACCCACCAGTATAAAC-----------------------------------------------------------------------------------------------------------------------------TCAAACAAAATTTGAAAACATTCA-------------------AATACTTACAGTATGTCAAGAAACTGTTTACACACTGTGTAATAAGTT-GAATATTTCACAGTGTG----------------------TAAACAGTTTCTTGACATACTGTATC
dm3 chr2L:16529921-16530082 - CTCCGTTCGCTGAAACTGCCGTATTT-CGCTCAACACAA-AAGCCATTA-AAAGTAATTTTAAAT--------------------------------------------------------------------TGTGGTCTAAAATTCCTACCTAAGAAAGG-TCCGGGTTCGACACCCACTATTATAAACTAGT----ATAAAAAGT----------------------------------------------------------------------------------------------------------------ATAAAATTTAAAAACATTCA-------------------AATACTT--------------------------------------------------------------------------------------------------------ATC
droEre2 scaffold_4845:19593972-19594166 - CTCCGTTCGCTGAAACTGCCGTATTTTCGCTGTACACATTAAGCCATCA-AAAGAAATTTTAATTAAGGACTCTAAAATTGTAGAAATTGTAGAATAACGT----------------------------------------GAAACTCCTACTTAAGAAAGG-TCCGGGTTCAACACCCACTGGTATAAAC----------------------------------------------------------------------AGATTT---------------------------------------TTTA----ACTTAAACACATTTCGAAAGCATTCA-------------------CTTAATT--------------------------------------------------------------------------------------------------------ATC
droYak3 2R:4572872-4573053 + CTCCGTTTGCTGAAACTGCCGTATTTTGGCTGTACCCCATAAGCCATTA-AAAGAAATTTTGGTTAAGGACTCTAAATTTGTACAAA-----------------AGATATC----------------------CGAGGTCCAAAACTCATACATAAGAAA-------------------------------AAGG----AT-------------------------------------GATGAAAAA-----------AAAGGATTT---------------------------------------TTAA----ACTCAAACA-AATTTGAAAACGTTCA-------------------AAAA-TG--------------------------------------------------------------------------------------------------------ATC
droEug1 scf7180000408961:98942-99147 - CTCCGCTCGCAGAAACTGCGACATTTTCACTATACACA--------TAA-AAAATAATATTAATTAGAGGTATTTAAAAGATAA---T-----------AT-----------------------------------GAT-------------------------------------------------------------------------------------------------------------------------AGAATCTTTTCTTTGAGTCTTTCTACAATTTT-ATAA-ATCTA-----------------------------------------CATTTTTGGATAAC-------------------------TG--------------------CCAAAACATCTCTGAAAGGCTTCTCCTTAAACTTTAGTAATATCATAATTATCATTAACTACTATCCA
droBia1 scf7180000301468:658774-658942 - CTCCGCCAGCAGCAACTGCGACATTTTCATTATACACA--------TGCGAAAATAATATCATTTACAGGCAGTAAGGCC-TAAA-----------------AAACA----TTTTCTAAAGGCCTTAGGGTCA------------CTCTAATTTTGAGAAGC-CCCTGGTTCAATACCCAGTGGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATACAAGTTTTACAAAAAAATTTAAA
droTak1 scf7180000415914:216638-216831 - CTCCGCTAACAGAAACTGCGACATTTTCATT-TCCACA--------TAC-AAAAAAATATCAATTGCAGGTTGTAAAGTCGCCA---------------CTCAAACA----TTTTCTTTAGGCCACATTGTCC--------------TTAATTTTA-AAAGGTCCTGGGTTCAACCCCCAGTGGTATAGA----------------------------------------------------ACATA-----------------TTTTTTT-----------------TTTTTAA------------------------------------ATCCATAAA-------------------AAAA----------------------------------------------------TCCTAGTGTA----------------------AAAT--------------------CA
droEle1 scf7180000490579:830077-830282 + CTCCGCTCGCATCAATTGCGACATTTTCACTGCACACA--------TAA-AAAATAATAACAATTACATCCAGTTAAAGTAAAT---TTGG------GCAGT---------------------------------------TACTTA----ATTC------G-ACCGAAATA-ACCC----------------------------------------------------CATGCGGTGTATTAAGAA-----------------TGTTTTT-----------------CTTTAAA-ATAAATATATT-------------------------------CAAAAATATTATTGGAAATC-------------------------TT--------------------TTGAAACGTCTCACAATTAATT-----------------------------------CATCCTTTAAC
droRho1 scf7180000778663:12471-12690 + CTCCGCTCGCAGAAGCTGCGACATTTTCACTACACACA--------TAA-ACAATAATATCAATTACAGTCAGTTAAAGTAAAG---TTCC------GCACT---------------------------------------GAAGTG-------------AG-CCCAAAATA-A---------------A-TTGGTGGATTAGAAAGT-ATGGCACTTGTATCTTATCCCAAGCGTTGTATGAACA--------------------TTTTT-----------------TTCT-AAAA-ACAGATATTACAAGATACTTGAACATACA-------------------TCATTGGAAATCAATT--------TA--------------------------------------------------------------------------------------------------TTC
droFic1 scf7180000454078:458485-458656 - CTCCGCCCGAAGAAACTGCGACATTTTTACTACACAAG--------TAA-AAAATAATTATAATCGAAGACATTTCT-----------------------------------------------------------------------------------------------TTCACTCATCCTTATACATTAAC----AAATTCAATG-----------------ACCCATTAGGTTTATAACGAAGCAATAATTATA-----------------------------------------------------------AAAATTATTTTGCATGCATTCA-------------------AGAATCCATATTA--------------------------------------------------------------------------------------------------TCT
droKik1 scf7180000302382:322773-322850 - CTCCGCTCGCACAAATTGCGACATTTTTA-GCTAAACAA-AAG--------------------------------------------TTGC------ACGTC---------------------------------------AAAATGCTAATTCCGATCAG-------------AATCTG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CT
droBip1 scf7180000396717:265966-265967 + TC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dp5 4_group3:8253708-8253713 - CTTGGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droPer2 scaffold_1:9702609-9702619 - GGCATTTTGTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
CTCCGTTCGCTGAAACTGCCGTATTT-CGCTCTACACAA-AAGACATTA-AAAGTAATTTTAATTAAGGACTGTTAAGTTGTAGAAA-----------------ACATATT----------------------TGTGGTCTAAAATTC-------------G-TCCGGGTTCGACACCCAACAGTATAAAC-----------------------------------------------------------------------------------------------------------------------------TCAAACAAAATTTGAAAACATTCA-------------------AATACTTACAGTATGTCAAGAAACTGTTTACACACTGTGTAATAAGTT-GAATATTTCACAGTGTG----------------------TAAACAGTTTCTTGACATACTGTATCSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
........................................................................................................................................................................................................................................................................................................................................................................................AAGAAACTGTTTACACACTGTG...........................................................................222022.95459115164001241371123353000
.......................................................................................................................................................................................................................................................................................................................................................................................CAAGAAACTGTTTACACACTGT............................................................................222018.70374434120230069670372000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................TCACAGTGTG----------------------TAAACAGTTTCT..............22149.861380002637000021000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................TTCACAGTGTG----------------------TAAACAGTTTC...............22147.501050003633500003010000
........................................................................................................................................................................................................................................................................................................................................................................................AAGAAACTGTTTACACACTGT............................................................................21204.40883110000014711132000000
.........................................................................................................................................................................................................................................................................................................................................................................................AGAAACTGTTTACACACTGTGT..........................................................................2293.333000000055881012000
..................................................................................................................................................................................................................................................................................................................................................................................................................................CAGTGTG----------------------TAAACAGTTTCTTGAC..........23203.15630000362700000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................TCACAGTGTG----------------------TAAACAGT..................18143.07430000142800001000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................CAGTGTG----------------------TAAACAGTTTCTTG............21202.5551000004400000700000
........................................................................................................................................................................................................................................................................................................................................................................................AAGAAACTGTTTACACACT..............................................................................19202.4048000004800000000000
.......................................................................................................................................................................................................................................................................................................................................................................................CAAGAAACTGTTTACACACTGG............................................................................22202.3547024500000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................TTCACAGTGTG----------------------TAAACAGT..................19142.14300000141400002000000
.......................................................................................................................................................................................................................................................................................................................................................................................CAAGAAACTGTTTACACAC...............................................................................19202.0541104003600000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................TCACAGTGTG----------------------TAAACAGTT.................19142.0028000072100000000000
.......................................................................................................................................................................................................................................................................................................................................................................................CAAGAAACTGTTTACACACTG.............................................................................21201.9539321301177030002000
..................................................................................................................................................................................................................................................................................................................................................................................................................................CAGTGTG----------------------TAAACAGTTTCT..............19201.8036000003600000000000
.........................................................................................................................................................................................................................................................................................................................................................................................AGAAACTGTTTACACACTGTG...........................................................................21201.7034000001801400029000
......................................................................................................................................................................................................................................................................................................................................................................................TCAAGAAACTGTTTACACACT..............................................................................21201.6533000002254020000000
.......................................................................................................................................................................................................................................................................................................................................................................................CAAGAAACTGTTTACACACT..............................................................................20201.4529100002401120000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGTG----------------------TAAACAGTTTCTTGAC..........22201.4028102020000000500000
..........................................................................................................................................................................................................................................................................................................................................................................................GAAACTGTTTACACACTGTGTA.........................................................................2291.331200200073000000000
........................................................................................................................................................................................................................................................................................................................................................................................AAGAAACTGTTTACACAC...............................................................................18201.2525100024000000000000
........................................................................................................................................................................................................................................................................................................................................................................................AAGAAACTGTTTACACACTG.............................................................................20201.2024001022000010000000
......................................................................................................................................................................................................................................................................................................................................................................................TCAAGAAACTGTTTACACACTG.............................................................................22201.202400010056730101000
..............................................................................................................................................................................................................................................................................................................................................................................................................................TTCACAGTGTG----------------------TAAACAGTT.................20141.0014000014000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................CACAGTGTG----------------------TAAACAGTTTCT..............21200.9018000018000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................TATTTCACAGTGTG----------------------TAAACAG...................21120.831000005500000000000
........................................................................................................................................................................................................................................................................................................................................................................................AAGAAACTGTTTACACACTGTGT..........................................................................2390.78700010050100000000
.......................................................................................................................................................................................................................................................................................................................................................................................CAAGAAACTGTTTACACACTGTG...........................................................................23200.7515000000012030000000
......................................................................................................................................................................................................................................................................................................................................................................................TCAAGAAACTGTTTACACACTGTG...........................................................................24200.7014000001400000000000
......................................................................................................................................................................................................................................................................................................................................................................................TCAAGAAACTGTTTACACAC...............................................................................20200.6513001001100100000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGTG----------------------TAAACAGTTTCTT.............19200.6012000001200000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................CAGTGTG----------------------TAAACAGTTTC...............18200.6012000001200000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................TATTTCACAGTGTG----------------------TAAACAGT..................22120.58700100500000100000
.................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGTGTG----------------------TAAACAGTTTC...............19200.5511000011000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGTGTG----------------------TAAACAGTTTCTTG............22200.5010000001000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................TCACAGTGTG----------------------TAAACAGTTT................20140.50700007000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................CACAGTGTG----------------------TAAACAGTT.................18200.5010000001000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................TTCACAGTGTG----------------------TAAACAGTTT................21140.50700007000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTG----------------------TAAACAGTTTCTTGAC..........21200.5010000001000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................CACAGTGTG----------------------TAAACAGTTTCTT.............22200.45900000800001000000
...........................................................................................................................................................................................................................................................................................................................................................................................AAACTGTTTACACACTGTGTA.........................................................................2190.44400000011110000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................TTCACAGTGTG----------------------TAAACAG...................18140.43600000000006000000
.....................................................................................................................................................................................................................................................................................................................................................................................GTCAAGAAACTGTTTACACACT..............................................................................22200.40871000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................TCAAGAAACTGTTTACACACTGT............................................................................23200.30600100022100000000
........................................................................................................................................................................................................................................................................................................................................................................................AAGAAACTGTTTACACACTGG............................................................................21200.25530200000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................CAAGAAACTGTTTACACACTGTGT..........................................................................2490.22200000001100000000
.........................................................................................................................................................................................................................................................................................................................................................................................AGAAACTGTTTACACACTGT............................................................................20200.20400000001300000000
............................................................................................................................................................................................................................................................................................................................................................................................AACTGTTTACACACTGTGTAAT.......................................................................22100.20200000000000200000
........................................................................................................................................................................................................................................................................................................................................................................................AAGAAACTGTTTACACACTGTGC..........................................................................23200.15300000012000000000
.................................................................................................................................................................................................................................................................................................................................................................................................TTTACACACTGTGTAATAAGTT-GAATATT..........................................................2980.13100000000000010000
........................................................................................................................................................................................................................................................................................................................................................................................................................................G----------------------TAAACAGTTTCTTGACATACTGTAT.26160.13200000000000020000
....................................................................................................................................................................................................................................................................................................................................................................................TGTCAAGAAACTGTTTACACACTGTG...........................................................................26170.12200000020000000000
........................................................................................................................................................................................................................................................................................................................................................................................AAGAAACTGTTTACACACTGTGTT.........................................................................2490.11100000010000000000
........................................................................................................................................................................................................................................................................................................................................................................................AAGAAACTGTTTACACACTGTGTA.........................................................................2490.11100010000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................TTACACACTGTGTAATAAGTT-GAATATT..........................................................2890.11100000000000001000
...................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGTG----------------------TAAACAGTTTCTTG............20200.10200010000001000000
...............................................................................................................................................................................................................................................................................................................................................................................CAGTATGTCAAGAAACTGTT......................................................................................20200.10200000000002000000
........................................................................................................................................................................................................................................................................................................................................................................................AAGAAACTGTTTACACA................................................................................17200.10200000000011000000
.........................................................................................................................................................................................................................................................................................................................................................................................AGAAACTGTTTACACACTG.............................................................................19200.10200100000100000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................G----------------------TAAACAGTTTCTTGACATACTGTA..25200.10200000000200000000
....................................................................................................................................................................................................................................................................................................................................................................................TGTCAAGAAACTGTTTACACACT..............................................................................23200.10220000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................TTCACAGTGTG----------------------TAAACAGTTTCTTGACA.........28110.09100010000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCACAGTGTG----------------------TAAACAGTT.................22120.08100000010000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................TCACAGTGTG----------------------TAAACAG...................17140.07100000000001000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................TATTTCACAGTGTG----------------------TAAAC.....................19160.06101000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................CACAGTGTG----------------------TAAACAGTTTCTTGAC..........25180.06100100000000000000
....................................................................................................................................................................................................................................................................................................................................................................................TGTCAAGAAACTGTTTACACACTGT............................................................................25190.05100000000100000000
..................................................................................................................................................................................................................................................................................................................................................................................TATGTCAAGAAACTGTTTACACACTGT............................................................................27190.05100000000100000000
.................................................................................................................................................................................................................................................................................................................................................................................GTATGTCAAGAAACTGTT......................................................................................18200.05100000000001000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................TGTG----------------------TAAACAGTTTCTTGACATA.......23200.05100000000010000000
.......................................................................................................................................................................................................................................................................................................................................................................................CAAGAAACTGTTTACACA................................................................................18200.05100000000001000000
.....................................................................................................................................................................................................................................................................................................................................................................................GTCAAGAAACTGTTTACACAC...............................................................................21200.05110000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................CAAGAAACTGTTTACACACC..............................................................................20200.05100100000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................GTG----------------------TAAACAGTTTCTTG............17200.05100000000001000000
....................................................................................................................................................................................................................................................................................................................................................................................TGTCAAGAAACTGTTTACACACTGG............................................................................25200.05101000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................TGTCAAGAAACTGTTTACACAC...............................................................................22200.05110000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................ATGTCAAGAAACTGTTTACACACT..............................................................................24200.05100010000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................GAAACTGTTTACACACTGT............................................................................19200.05100100000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................CAAGAAACTGTTTACACACTGTT...........................................................................23200.05100000010000000000
...................................................................................................................................................................................................................................................................................................................................................................................ATGTCAAGAAACTGTTTACACA................................................................................22200.05100000001000000000
..................................................................................................................................................................................................................................................................................................................................................................................TATGTCAAGAAACTGTTTAC...................................................................................20200.05100000010000000000
.....................................................................................................................................................................................................................................................................................................................................................................................GTCAAGAAACTGTTTACACACTGT............................................................................24200.05101000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................TACAGTATGTCAAGAAACTGT.......................................................................................21200.05110000000000000000
droSec2
CTCCGTTCGCTGAAACTGCCGTATTT-CGCTCTACACAA-AAGACATTA-AAAGTAATTTTAATTAAGGACTGTTAAGTTGTAG---T---------------------------------------------TGTGATCTAAAATTC-------------G-TCCGGGTTCGACACCCACCAGTATAAAC-----------------------------------------------------------------------------------------------------------------------------TCAAACAAAATTTGAAAACATTCA-------------------AATACTTACAGTATGTCAAGAAACTGTTTACACACTGTGTAATAAGTT-GAATATTTCACAGTGTG----------------------TAAACAGTTTCTTGACATACTGTATCSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.........................................................................................................................................................................................................................................................................................................................................................................................AGAAACTGTTTACACACTGTGT..........................................................................22614.508724172521
........................................................................................................................................................................................................................................................................................................................................................................................AAGAAACTGTTTACACACTGTG...........................................................................221912.2123217583712
........................................................................................................................................................................................................................................................................................................................................................................................AAGAAACTGTTTACACACTGT............................................................................21201.653391527
...............................................................................................................................................................................................................................................................................................................................................................................................................................TCACAGTGTG----------------------TAAACAGTTTCT..............22131.622111334
.........................................................................................................................................................................................................................................................................................................................................................................................AGAAACTGTTTACACACTGTG...........................................................................21191.262424000
.......................................................................................................................................................................................................................................................................................................................................................................................CAAGAAACTGTTTACACACTGT............................................................................22201.20247953
.............................................................................GTTGTAG---T---------------------------------------------TGTGATCTAA..........................................................................................................................................................................................................................................................................................................................................1811.0010010
..............................................................................................................................................................................................................................................................................................................................................................................................................................TTCACAGTGTG----------------------TAAACAGTTTC...............22111.00116041
...........................................................................................................................................................................................................................................................................................................................................................................................AAACTGTTTACACACTGTGT..........................................................................2070.7151301
......................................................................................................................................................................................................................................................................................................................................................................................TCAAGAAACTGTTTACACACTG.............................................................................22200.65137123
..................................................................................................................................................................................................................................................................................................................................................................................................................................CAGTGTG----------------------TAAACAGTTTCTTG............21200.65134243
.......................................................................................................................................................................................................................................................................................................................................................................................CAAGAAACTGTTTACACACTG.............................................................................21200.55116104
..................................................................................................................................................................................................................................................................................................................................................................................................................................CAGTGTG----------------------TAAACAGTTTCTTGA...........22200.4591143
..........................................................................................................................................................................................................................................................................................................................................................................................GAAACTGTTTACACACTGTGT..........................................................................2170.4333000
........................................................................................................................................................................................................................................................................................................................................................................................AAGAAACTGTTTACACACTGTGT..........................................................................2360.3321010
.........................................................................................................................................................................................................................................................................................................................................................................................AGAAACTGTTTACACACTGTGTA.........................................................................2360.3322000
...............................................................................................................................................................................................................................................................................................................................................................................................................................TCACAGTGTG----------------------TAAACAGTTTCTT.............23130.3142011
.................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGTGTG----------------------TAAACAGTTTCTTG............22200.3060132
...................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGTG----------------------TAAACAGTTTCTTGAC..........22170.2443010
..............................................................................................................................................................................................................................................................................................................................................................................................................................TTCACAGTGTG----------------------TAAACAG...................18130.2330012
...................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGTG----------------------TAAACAGTTTCTTGA...........21200.2041102
........................................................................................................................................................................................................................................................................................................................................................................................AAGAAACTGTTTACACACTGTGTT.........................................................................2460.1710010
.........................................................................................................................................................................................................................................................................................................................................................................................AGAAACTGTTTACACACTGTGTT.........................................................................2360.1711000
........................................................................................................................................................................................................................................................................................................................................................................................AAGAAACTGTTTACACACTG.............................................................................20200.1531002
.........................................................................................................................................................................................................................................................................................................................................................................................AGAAACTGTTTACACACTGT............................................................................20200.1532100
..........................................................................................................................................................................................................................................................................................................................................................................................GAAACTGTTTACACACTGTGTA.........................................................................2270.1411000
...........................................................................................................................................................................................................................................................................................................................................................................................AAACTGTTTACACACTGTGTA.........................................................................2170.1410010
...................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGTG----------------------TAAACAGTTTCTTG............20200.1020020
........................................................................................................................................................................................................................................................................................................................................................................................AAGAAACTGTTTACACACT..............................................................................19200.1021001
..........................................................................................................................................................................................................................................................................................................................................................................................GAAACTGTTTACACACTGTG...........................................................................20200.1022000
.............................................................................................................................................................................................................................................................................................................................................................................................................................TTTCACAGTGTG----------------------TAAACAGTTTC...............23110.0911000
..............................................................................................................................................................................................................................................................................................................................................................................................................................TTCACAGTGTG----------------------TAAACAGTT.................20120.0810010
...............................................................................................................................................................................................................................................................................................................................................................................................................................TCACAGTGTG----------------------TAAACAGTTTC...............21130.0810010
...............................................................................................................................................................................................................................................................................................................................................................................................................................TCACAGTGTG----------------------TAAACAGTTTCTTG............24130.0810100
..................................................................................................................................................................................................................................................................................................................................................................................................................................CAGTGTG----------------------TAAACAGTTTCTTGAC..........23170.0611000
.....................................................................................................................................................................................................................................................................................................................................................................................GTCAAGAAACTGTTTACACACT..............................................................................22170.0611000
......................................................................................................................................................................................................................................................................................................................................................................................TCAAGAAACTGTTTACACACTGT............................................................................23190.0511000
................................................................................................................................................................................................................................................................................................................................................................................................................................CACAGTGTG----------------------TAAACAGTTTCTTG............23190.0510010
.......................................................................................................................................................................................................................................................................................................................................................................................CAAGAAACTGTTTACACACTGTG...........................................................................23190.0511000
...........................................................................................................................................................................................................................................................................................................................................................................................AAACTGTTTACACACTGTG...........................................................................19200.0511000
.........................................................................................................................................................................................................................................................................................................................................................................................AGAAACTGTTTACACACTG.............................................................................19200.0511000
.......................................................................................................................................................................................................................................................................................................................................................................................CAAGAAACTGTTTACACACT..............................................................................20200.0511000
................................................................................................................................................................................................................................................................................................................................................................................................................................CACAGTGTG----------------------TAAACAGTTTC...............20200.0511000
..................................................................................................................................................................................................................................................................................................................................................................................................................................CAGTGTG----------------------TAAACAGTTTCTTGT...........22200.0510001
........................................................................................................................................................................................................................................................................................................................................................................................AAGAAACTGTTTACACACTTG............................................................................21200.0511000
............................................................................................................................................................................................................................................................................................................................................................................................AACTGTTTACACACTGTG...........................................................................18200.0510010
.................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGTGTG----------------------TAAACAGTTTCTT.............21200.0511000
......................................................................................................................................................................................................................................................................................................................................................................................TCAAGAAACTGTTTACACACT..............................................................................21200.0511000
dm3
CTCCGTTCGCTGAAACTGCCGTATTT-CGCTCAACACAA-AAGCCATTA-AAAGTAATTTTAAAT--------------------------------------------------------------------TGTGGTCTAAAATTCCTACCTAAGAAAGG-TCCGGGTTCGACACCCACTATTATAAACTAGT----ATAAAAAGT----------------------------------------------------------------------------------------------------------------ATAAAATTTAAAAACATTCA-------------------AATACTT--------------------------------------------------------------------------------------------------------ATCSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.........................................................................................................................................................TAAGAAAGG-TCCGGGTTCGAC..........................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000010000
..CCGTTCGCTGAAACTGCCGTT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
.....................TATTT-CGCTCAACACAA-AAGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
...........GAAACTGCCGTATTT-CGCTCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
droEre2
CTCCGTTCGCTGAAACTGCCGTATTTTCGCTGTACACATTAAGCCATCA-AAAGAAATTTTAATTAAGGACTCTAAAATTGTAGAAATTGTAGAATAACGT----------------------------------------GAAACTCCTACTTAAGAAAGG-TCCGGGTTCAACACCCACTGGTATAAAC----------------------------------------------------------------------AGATTT---------------------------------------TTTA----ACTTAAACACATTTCGAAAGCATTCA-------------------CTTAATT--------------------------------------------------------------------------------------------------------ATCSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads
droYak3
CTCCGTTTGCTGAAACTGCCGTATTTTGGCTGTACCCCATAAGCCATTA-AAAGAAATTTTGGTTAAGGACTCTAAATTTGTACAAA-----------------AGATATC----------------------CGAGGTCCAAAACTCATACATAAGAAA-------------------------------AAGG----AT-------------------------------------GATGAAAAA-----------AAAGGATTT---------------------------------------TTAA----ACTCAAACA-AATTTGAAAACGTTCA-------------------AAAA-TG--------------------------------------------------------------------------------------------------------ATCSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
................................................................................GTACAAA-----------------AGATATC----------------------CGAGGTCCAAAA........................................................................................................................................................................................................................................................................................................................................2611.00100100000000
droEug1
CTCCGCTCGCAGAAACTGCGACATTTTCACTATACACA--------TAA-AAAATAATATTAATTAGAGGTATTTAAAAGATAA---T-----------AT-----------------------------------GAT-------------------------------------------------------------------------------------------------------------------------AGAATCTTTTCTTTGAGTCTTTCTACAATTTT-ATAA-ATCTA-----------------------------------------CATTTTTGGATAAC-------------------------TG--------------------CCAAAACATCTCTGAAAGGCTTCTCCTTAAACTTTAGTAATATCATAATTATCATTAACTACTATCCASizeHit CountTotal NormTotal
No Reads
droBia1
CTCCGCCAGCAGCAACTGCGACATTTTCATTATACACA--------TGCGAAAATAATATCATTTACAGGCAGTAAGGCC-TAAA-----------------AAACA----TTTTCTAAAGGCCTTAGGGTCA------------CTCTAATTTTGAGAAGC-CCCTGGTTCAATACCCAGTGGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATACAAGTTTTACAAAAAAATTTAAASizeHit CountTotal NormTotal
No Reads
droTak1
CTCCGCTAACAGAAACTGCGACATTTTCATT-TCCACA--------TAC-AAAAAAATATCAATTGCAGGTTGTAAAGTCGCCA---------------CTCAAACA----TTTTCTTTAGGCCACATTGTCC--------------TTAATTTTA-AAAGGTCCTGGGTTCAACCCCCAGTGGTATAGA----------------------------------------------------ACATA-----------------TTTTTTT-----------------TTTTTAA------------------------------------ATCCATAAA-------------------AAAA----------------------------------------------------TCCTAGTGTA----------------------AAAT--------------------CASizeHit CountTotal NormTotal
No Reads
droEle1
CTCCGCTCGCATCAATTGCGACATTTTCACTGCACACA--------TAA-AAAATAATAACAATTACATCCAGTTAAAGTAAAT---TTGG------GCAGT---------------------------------------TACTTA----ATTC------G-ACCGAAATA-ACCC----------------------------------------------------CATGCGGTGTATTAAGAA-----------------TGTTTTT-----------------CTTTAAA-ATAAATATATT-------------------------------CAAAAATATTATTGGAAATC-------------------------TT--------------------TTGAAACGTCTCACAATTAATT-----------------------------------CATCCTTTAACSizeHit CountTotal NormTotal
No Reads
droRho1
CTCCGCTCGCAGAAGCTGCGACATTTTCACTACACACA--------TAA-ACAATAATATCAATTACAGTCAGTTAAAGTAAAG---TTCC------GCACT---------------------------------------GAAGTG-------------AG-CCCAAAATA-A---------------A-TTGGTGGATTAGAAAGT-ATGGCACTTGTATCTTATCCCAAGCGTTGTATGAACA--------------------TTTTT-----------------TTCT-AAAA-ACAGATATTACAAGATACTTGAACATACA-------------------TCATTGGAAATCAATT--------TA--------------------------------------------------------------------------------------------------TTCSizeHit CountTotal NormTotal
No Reads
droFic1
CTCCGCCCGAAGAAACTGCGACATTTTTACTACACAAG--------TAA-AAAATAATTATAATCGAAGACATTTCT-----------------------------------------------------------------------------------------------TTCACTCATCCTTATACATTAAC----AAATTCAATG-----------------ACCCATTAGGTTTATAACGAAGCAATAATTATA-----------------------------------------------------------AAAATTATTTTGCATGCATTCA-------------------AGAATCCATATTA--------------------------------------------------------------------------------------------------TCTSizeHit CountTotal NormTotal
No Reads
droKik1
CTCCGCTCGCACAAATTGCGACATTTTTA-GCTAAACAA-AAG--------------------------------------------TTGC------ACGTC---------------------------------------AAAATGCTAATTCCGATCAG-------------AATCTG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTSizeHit CountTotal NormTotal
No Reads
droBip1
TC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dp5
CTTGGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
GGCATTTTGTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads

Generated: 05/18/2015 at 11:53 PM