ID:dsi_15677 |
Coordinate:3r:17388342-17388427 - |
Confidence:Candidate |
Type:Unknown |
[View on UCSC Genome Browser {Cornell Mirror}] |
| Legend: | mature | star | mismatch in read |
|
|
|
|
| -14.0 | -13.9 | -13.9 |
 |
 |
 |
exon [3r_17388214_17388341_-]; CDS [3r_17388214_17388341_-]; CDS [3r_17388428_17388692_-]; exon [3r_17388428_17388792_-]; intron [3r_17388342_17388427_-]
No Repeatable elements found
| ##################################################--------------------------------------------------------------------------------------################################################## TGTCACCTTGCTGCCACCTATCACCGATCCCGGCAAGATCATCTGCATTGGTAAAGAATGAATTTACATACATATGTATAAACATATGTAGGTGGACCCTGACCTCCAAAATGACGTATTCTCGATCTGCTGACAGGTCTGAACTACCAGGACCACTGCGATGAGCAGAACAAGCCGGCCCCCAAG **************************************************((..(((.(((...(((.(((((((((....)))))))))..((((........)))).......)))...))).)))....))..************************************************** |
Read size | # Mismatch | Hit Count | Total Norm | Total | M024 male body |
M025 embryo |
M053 female body |
SRR553486 Makindu_3 day-old ovaries |
SRR553485 Chicharo_3 day-old ovaries |
SRR618934 dsim w501 ovaries |
SRR553487 NRT_0-2 hours eggs |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ..........................................................................................................................................CTGAACTACCAGGACCACTGCGAT........................ | 24 | 0 | 1 | 21.00 | 21 | 10 | 8 | 3 | 0 | 0 | 0 | 0 |
| ..........................................................................................................................................CTGAACTACCAGGACCACTGCGATG....................... | 25 | 0 | 1 | 11.00 | 11 | 7 | 3 | 1 | 0 | 0 | 0 | 0 |
| ..........................................................................................................................................CTGAACTACCAGGACCACTGC........................... | 21 | 0 | 1 | 5.00 | 5 | 1 | 3 | 1 | 0 | 0 | 0 | 0 |
| ...................................................................................................................................................CAGGACCACTGCGATGAGC.................... | 19 | 0 | 1 | 4.00 | 4 | 1 | 3 | 0 | 0 | 0 | 0 | 0 |
| ..........................................................................................................................................CTGAACTACCAGGACCACTGCGATGAGCA................... | 29 | 0 | 1 | 4.00 | 4 | 3 | 1 | 0 | 0 | 0 | 0 | 0 |
| ..........................................................................................................................................CTGAACTACCAGGACCACC............................. | 19 | 1 | 1 | 3.00 | 3 | 0 | 3 | 0 | 0 | 0 | 0 | 0 |
| ...........................................................................................................................................TGAACTACCAGGACCACTGCGATGAGC.................... | 27 | 0 | 1 | 3.00 | 3 | 0 | 0 | 0 | 1 | 2 | 0 | 0 |
| ..........................................................................................................................................CTGAACTACCAGGACCACTGCGATGAGC.................... | 28 | 0 | 1 | 3.00 | 3 | 2 | 0 | 1 | 0 | 0 | 0 | 0 |
| .....................CACCGATCCCGGCAAGATCATCTGCATT......................................................................................................................................... | 28 | 0 | 1 | 2.00 | 2 | 1 | 0 | 1 | 0 | 0 | 0 | 0 |
| .....................................................................................................................ATTCTCGATCTGCTGACAGGT................................................ | 21 | 0 | 1 | 2.00 | 2 | 2 | 0 | 0 | 0 | 0 | 0 | 0 |
| .............................CCGGCAAGATCATCTGCATTGGT...................................................................................................................................... | 23 | 0 | 1 | 2.00 | 2 | 0 | 2 | 0 | 0 | 0 | 0 | 0 |
| ...............................GGCAAGATCATCTGCATTGGT...................................................................................................................................... | 21 | 0 | 1 | 2.00 | 2 | 1 | 0 | 1 | 0 | 0 | 0 | 0 |
| .....................CACCGATCCCGGCAAGAT................................................................................................................................................... | 18 | 0 | 1 | 2.00 | 2 | 2 | 0 | 0 | 0 | 0 | 0 | 0 |
| .....................CACCGATCCCGGCAAGATCATCTGCATTG........................................................................................................................................ | 29 | 0 | 1 | 2.00 | 2 | 1 | 1 | 0 | 0 | 0 | 0 | 0 |
| ............................................................................................................................................GAACTACCAGGACCACTGCGAT........................ | 22 | 0 | 1 | 2.00 | 2 | 1 | 0 | 1 | 0 | 0 | 0 | 0 |
| .................................................................................................................ACGTATTCTCGATCTGCTGACAG.................................................. | 23 | 0 | 1 | 1.00 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
| .................CTATCACCGATCCCGGCAAGATCATCTGC............................................................................................................................................ | 29 | 0 | 1 | 1.00 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
| .......................................................................................................................................GGTCTGAACTACCAGGAC................................. | 18 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| ...................................................................................................................................................CAGGACCACTGCGATGAGCA................... | 20 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| ......................................................................................................................................TGGTCTGAACTACCAGGAC................................. | 19 | 1 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
| ........................................................................................................................................GTCTGAACTACCAGGACCACC............................. | 21 | 1 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
| .....................................................................................................................................TTGGTCTGAACTACCAGGATCACTGCGAT........................ | 29 | 3 | 1 | 1.00 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 0 |
| ..........................................................................................................................................CTGAACTACCAGGACCACTGCAAT........................ | 24 | 1 | 1 | 1.00 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
| ...........................................................................................................................................TGAACTACCAGGACCACTGCGATGAGCA................... | 28 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| ...........................................................................................................................................TGAACTACCAGGATTACTGCGATGAGC.................... | 27 | 2 | 1 | 1.00 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 0 |
| ..................................................................................................................................................................GAGCAGAACAAGCCGGCCCCCAA. | 23 | 0 | 1 | 1.00 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
| ....................................................................................................................................ACAGGTCTGAACTACCAGGAC................................. | 21 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| ................................................................................................................................................................ATGAGCAGAACAAGCCGGCCCCCAAG | 26 | 0 | 1 | 1.00 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
| ........................................................................................................................................GTCTGAACTACCAGGACCACTGCGA......................... | 25 | 0 | 1 | 1.00 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
| .................................CAAGATCATCTGCATTGGT...................................................................................................................................... | 19 | 0 | 1 | 1.00 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
| ....................TCACCGATCCCGGCAAGAT................................................................................................................................................... | 19 | 0 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
| ..........................ATCCCGGCAAGATCATCTGCATT......................................................................................................................................... | 23 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| ..........................................................................................................................................CTGAACTACTAGGACCACTGCGATG....................... | 25 | 1 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
| ............................................................................................................................................................TGCGACGAGCAGAACAAGCCGGCCCCCA.. | 28 | 1 | 1 | 1.00 | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 0 |
| ...........................TCCCGGCAAGATCATCTGCAC.......................................................................................................................................... | 21 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| ...........................................................................................................................................TGAACTACCAGGACCACTGCGATGAG..................... | 26 | 0 | 1 | 1.00 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 0 |
| ..............................................................................................................................................ACTACCAGGACCACTGCGATG....................... | 21 | 0 | 1 | 1.00 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
| ..........................................................................................................................................CTGAACTACCAGGACCACTGCGATTA...................... | 26 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| ........................................................................................................................................GTCTGAACTACCAGGACC................................ | 18 | 0 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
| .......................................................................................................................................GGTCTGAACTACCAGGACCACTGCGAT........................ | 27 | 0 | 1 | 1.00 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
| ...............................GGCAAGATCATCTGCATTGGC...................................................................................................................................... | 21 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| ........................CGATCCCGGCAAGATCATCTGCATTGGT...................................................................................................................................... | 28 | 0 | 1 | 1.00 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
| ..........................................................................................................................................CTGAACTACCAGGACTACTGCGAT........................ | 24 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| ...............................GGCAAGATCATCTGCATTGG....................................................................................................................................... | 20 | 0 | 1 | 1.00 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
| ..........................................................................................................................................CTGAACTACCAGGACCACTGCGATGA...................... | 26 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| .....................CACCGATCCCGGCAAGAG................................................................................................................................................... | 18 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| ..........................................................................................................................................CTGAACTACCAGGACCACTGG........................... | 21 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| ..........................................................................................................................................CTGAACTACCAGGACCACTGCGAC........................ | 24 | 1 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| ..........................................................................................................................................CTGAACTACCAGGACCACT............................. | 19 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| .....................CACCGATCCCGGCAAGATCATCTGCATGG........................................................................................................................................ | 29 | 1 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
| .......................................................................................................................TCTCGATCTGCTGACGGGT................................................ | 19 | 1 | 2 | 0.50 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| ................................................................................................................................................TACCGGGACCTCGGCGATGA...................... | 20 | 3 | 5 | 0.40 | 2 | 0 | 0 | 0 | 2 | 0 | 0 | 0 |
| .....................CACCGATCCCGGCAAGAC................................................................................................................................................... | 18 | 1 | 3 | 0.33 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
| ............................................................................................................................................GAACAACCAGGCCCAGTGCGA......................... | 21 | 3 | 3 | 0.33 | 1 | 0 | 0 | 0 | 0 | 0 | 1 | 0 |
| ..........................AACCCGTCAAGATCATC............................................................................................................................................... | 17 | 2 | 19 | 0.05 | 1 | 0 | 0 | 0 | 0 | 0 | 1 | 0 |
| .......................................CAGCTGCATTGGTGAAG.................................................................................................................................. | 17 | 2 | 20 | 0.05 | 1 | 0 | 0 | 0 | 0 | 0 | 1 | 0 |
| ........................................................................................................................CTCGATCTGCTTAGAG.................................................. | 16 | 2 | 20 | 0.05 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 1 |
|
ACAGTGGAACGACGGTGGATAGTGGCTAGGGCCGTTCTAGTAGACGTAACCATTTCTTACTTAAATGTATGTATACATATTTGTATACATCCACCTGGGACTGGAGGTTTTACTGCATAAGAGCTAGACGACTGTCCAGACTTGATGGTCCTGGTGACGCTACTCGTCTTGTTCGGCCGGGGGTTC
**************************************************((..(((.(((...(((.(((((((((....)))))))))..((((........)))).......)))...))).)))....))..************************************************** |
Read size | # Mismatch | Hit Count | Total Norm | Total | SRR618934 dsim w501 ovaries |
O001 Testis |
SRR902008 ovaries |
SRR902009 testis |
SRR553486 Makindu_3 day-old ovaries |
M023 head |
SRR553488 RT_0-2 hours eggs |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| .....................................................................................................................................................CCTGGTGACGCTACTCGTCTT................ | 21 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| ..........................................................................................................................................GACTTGATGGTCCTGGTGACG........................... | 21 | 0 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
| ........ATGACGGTGGATAGTGGCTAGGG........................................................................................................................................................... | 23 | 1 | 1 | 1.00 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 0 |
| ..........................TAGGGCCGTTCTAGTAGACGT........................................................................................................................................... | 21 | 0 | 1 | 1.00 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| ACAGTGGAACGACGGTGGATAGTGGCT............................................................................................................................................................... | 27 | 0 | 1 | 1.00 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
| ..........................................................................................................................................AACTTCAGGGTCCTGGTGACG........................... | 21 | 3 | 2 | 0.50 | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 0 |
| .......................GGATAGCGCCGTTCTAGTAGTC............................................................................................................................................. | 22 | 3 | 2 | 0.50 | 1 | 0 | 0 | 0 | 0 | 0 | 1 | 0 |
| ...............TGGATAGTGACTAGGTC.......................................................................................................................................................... | 17 | 2 | 11 | 0.09 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 1 |
| .......................................................................................................................................................................CTTGTTCAGCCGAGGGT.. | 17 | 2 | 18 | 0.06 | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 0 |
Generated: 04/23/2015 at 06:26 PM