ID:

dsi_15657

 Coordinate:

3l:16497123-16497272 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

TCGCCAATACGTGCGAGGAGTGCAACAAGATCATCGGCATTGACTCCAAGGTACGTGAGTGTATTTGAACCATTTCGACTGGGGATCGTCGATTGGGGCCAATAAACTGTTCGTAAACCGAATTTATGGCCATATGTGGGTAGTCAAAACATTTAATAACCATTAAGTAGGACAGAAATGCAGGCAGACGGCAAATATGGAGCACACTTCCCTTGAGAAGTTACGAAAACCAGTTCCGAAAAGAAATGGA
**************************************************((((......)))).....(((..(((((........))))).)))(((((.(((...(((((.....))))))))))))).(((((..((.(((....(((((.....((........))....)))))......))).))..))))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 M025
embryo
 SRR553487
NRT_0-2 hours eggs
 M023
head
 M053
female body
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR902008
ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
............................................................................................................GTTCGTCAACCGATCTTATGGC........................................................................................................................ 22 3 1 3.00 3 3 0 0 0 0 0 0 0 0 0
...................................................................AACCATGCCGACTAGGGATCG.................................................................................................................................................................. 21 3 1 2.00 2 0 2 0 0 0 0 0 0 0 0
...............................CATCGGCATTGACTCCAAGGATCT................................................................................................................................................................................................... 24 3 1 2.00 2 1 1 0 0 0 0 0 0 0 0
...............................CATCGGCATTGACTCCAAGG....................................................................................................................................................................................................... 20 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0
................................................................TTGAAGCATTCCGCCTGGGGA..................................................................................................................................................................... 21 3 1 2.00 2 0 0 2 0 0 0 0 0 0 0
.......................AACAAGATCATCGGCATTGACTC............................................................................................................................................................................................................ 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.....................GCAACAAGATCATCGGCATTGA............................................................................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..........GTGCGAGGAGTGCAACAAGATCATCGGC.................................................................................................................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.....................GCAACAAGATCATCGGCATTGACTCCA.......................................................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.......................AACAAGATCATTGGCATTGACG............................................................................................................................................................................................................. 22 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0
..................AGTGCAACAAGATCATCGGCATT................................................................................................................................................................................................................. 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.....................GCAACAAGATCATCGGCAT.................................................................................................................................................................................................................. 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.............................................................................................................TTCGTCAACCGATCTTATGGC........................................................................................................................ 21 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...............................CATCGGCATTGACTCCAAGGATC.................................................................................................................................................................................................... 23 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0
............................GATCATCGGCATTGACTCCAAGGATC.................................................................................................................................................................................................... 26 2 1 1.00 1 0 0 0 0 1 0 0 0 0 0
.................................TAGGCATTGTCTCCAAGGT...................................................................................................................................................................................................... 19 2 2 0.50 1 0 0 0 0 0 1 0 0 0 0
....................TGCAATAAGATCGTCGACAT.................................................................................................................................................................................................................. 20 3 10 0.20 2 0 0 0 0 0 0 1 1 0 0
.................................................................................GGGATCGGCGATTGGGACGA..................................................................................................................................................... 20 3 7 0.14 1 0 0 1 0 0 0 0 0 0 0
....................................................................ACCATGCCGACTAGGGATC................................................................................................................................................................... 19 3 8 0.13 1 1 0 0 0 0 0 0 0 0 0
.....................................................................CTATGTCGACTAGGGATCG.................................................................................................................................................................. 19 3 10 0.10 1 0 0 1 0 0 0 0 0 0 0
.......................AACAAGATTATCGGAATT................................................................................................................................................................................................................. 18 2 11 0.09 1 1 0 0 0 0 0 0 0 0 0
.......................................................................AGTTCGACTAGTGATCGTC................................................................................................................................................................ 19 3 11 0.09 1 1 0 0 0 0 0 0 0 0 0
.....................................CATTGTCTCCAAGGT...................................................................................................................................................................................................... 15 1 12 0.08 1 0 0 0 0 0 1 0 0 0 0
...................................................................AACGATTTCGACTGG........................................................................................................................................................................ 15 1 15 0.07 1 0 0 1 0 0 0 0 0 0 0
......................................................................................................................................................................GTAGGACAGAAGCGCAG................................................................... 17 2 16 0.06 1 0 0 0 0 0 0 0 0 1 0
.............................................................................................TGGAGCCAATAAACT.............................................................................................................................................. 15 1 20 0.05 1 0 0 0 0 0 1 0 0 0 0
....................................................................................................................................................................................................................................ACCAGGTCCGAAAAAAA..... 17 2 20 0.05 1 0 0 0 0 0 0 0 0 0 1
..................................................................................GGATCGGCGATTGGGACGA..................................................................................................................................................... 19 3 20 0.05 1 0 0 1 0 0 0 0 0 0 0

Anti-sense strand reads

AGCGGTTATGCACGCTCCTCACGTTGTTCTAGTAGCCGTAACTGAGGTTCCATGCACTCACATAAACTTGGTAAAGCTGACCCCTAGCAGCTAACCCCGGTTATTTGACAAGCATTTGGCTTAAATACCGGTATACACCCATCAGTTTTGTAAATTATTGGTAATTCATCCTGTCTTTACGTCCGTCTGCCGTTTATACCTCGTGTGAAGGGAACTCTTCAATGCTTTTGGTCAAGGCTTTTCTTTACCT
**************************************************((((......)))).....(((..(((((........))))).)))(((((.(((...(((((.....))))))))))))).(((((..((.(((....(((((.....((........))....)))))......))).))..))))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 M024
male body		 SRR553485
Chicharo_3 day-old ovaries
 SRR902009
testis
...............TCCTCACGTTGTGCT............................................................................................................................................................................................................................ 15 1 7 0.29 2 2 0 0 0 0 0
...............................................................................................................................................................................................................................GCTTTTCATCAAGGCTTT......... 18 2 9 0.11 1 0 1 0 0 0 0
.....................................................GGACTCACCTGAACTTGGT.................................................................................................................................................................................. 19 3 19 0.11 2 1 0 1 0 0 0
.....................................................................GGGAAAGCTGATGCCTAG................................................................................................................................................................... 18 3 20 0.10 2 1 0 0 1 0 0
...............TCCCCACGTTGTTCT............................................................................................................................................................................................................................ 15 1 13 0.08 1 0 1 0 0 0 0
......................................TAACAGAGGTTCCAGGGA.................................................................................................................................................................................................. 18 3 20 0.05 1 0 0 0 0 1 0
........................................................................AAAACTGACATCTAGCAGC............................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 1

Generated: 04/24/2015 at 05:05 AM