ID:

dsi_15648

 Coordinate:

3r:4283258-4283534 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

CCTCGAAGCGCAGCTTCTTGGAACGATCTCACAGTCCGGCTATATATGGCGTGAGTAGAATGGTCAAGTCAAGGATGCAAACCGATCAGGAAAGCGGAGAGAGTATTTAATATCAGTGAATCAGTGAATTAGTGACTCTCTGAAGAAAACAGCAACCAATAAAAGAATATTATACTTAAACAAAAGTAAACACCGTAACTAATAATGATAACCGGAATAGTTGATTAAATCTTTTGAATTCAGTATGTTTCTGGCTTATAATCGGTTTGCAACCATTAATCGGATCTTTAAAACATGTAGTTAATCCTATCCAATCAAAACTTTTAGAGCATGCGTCGCAGTGCAGGTCCGGACTTCGGCTCTCCACCGCCCACCGC
**************************************************..((((.((.(((.........((.(((((((((((.....((((..(((((((..(((((.(((.((...)).))))))))..)))))))......................((((...((((((....((((((.........((((((....((.....))...)))))).......)))))).....)))))).)))).))))...))))))))))).)).((((........)))).....((((......))))))).))...))))....************************************************** 		Read size # Mismatch Hit Count Total Norm Total GSM343915
embryo
 M025
embryo
 M024
male body		 SRR902008
ovaries
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR902009
testis
 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
........................................................................................................................TCAGGGACTTAGTGACTCTCT............................................................................................................................................................................................................................................ 21 2 2 2.50 5 2 0 3 0 0 0 0 0 0 0
....................GAACGATCTCACAGTCCGGCT................................................................................................................................................................................................................................................................................................................................................ 21 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0
............................TCACAGTCCGGCTATATATGG........................................................................................................................................................................................................................................................................................................................................ 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
....................GAACGATCCCACAGTCCGGCT................................................................................................................................................................................................................................................................................................................................................ 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................................................................................................CGCAGTGCAGGTCCGGAC....................... 18 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................................................................................................GGTCCAGGTCCGGACTTCGGCT................ 22 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................................................................................GTCGCAGTGCAGGTCCGGACTTCGGC................. 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
..........................TCTCACAGTCCGACGATA............................................................................................................................................................................................................................................................................................................................................. 18 2 2 0.50 1 0 0 0 0 0 0 1 0 0 0
........................................................................................................................TCAGGAAATTAGTGACTCTC............................................................................................................................................................................................................................................. 20 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0
........................................................................................................................TCAGGCAATTTGTGACTCTCT............................................................................................................................................................................................................................................ 21 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0
........................................................................................................................TCAGGGAATTAGTGACTGTCTA........................................................................................................................................................................................................................................... 22 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0
........................................................................................................................TCAGGGACTTAGGGACTCTCT............................................................................................................................................................................................................................................ 21 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0
........................................................................................................................TCAGGGAATTAGTGACTCTCAT........................................................................................................................................................................................................................................... 22 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0
........................................................................................................................TCAGGGAATTAGTGACTCTCAAA.......................................................................................................................................................................................................................................... 23 3 3 0.33 1 1 0 0 0 0 0 0 0 0 0
........................................................................................................................TCAGGGAATTAGAGACTCTCA............................................................................................................................................................................................................................................ 21 3 3 0.33 1 1 0 0 0 0 0 0 0 0 0
........................................................................................................................TCAGGGACTTACTGACTCTCT............................................................................................................................................................................................................................................ 21 3 3 0.33 1 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................TTGCAAGCTTTAATCGGAT............................................................................................ 19 2 3 0.33 1 0 0 0 0 1 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................................................ACCAGATCTTTTAGAGCATG............................................ 20 3 7 0.29 2 0 0 0 0 0 2 0 0 0 0
.........................................................................................................................................................................................................................................................................TGTGCAACCATTGTTCGGAT............................................................................................ 20 3 7 0.29 2 0 0 0 0 0 0 0 1 1 0
.............................................................................................................................GGATCAGTGACTCTCTG........................................................................................................................................................................................................................................... 17 2 4 0.25 1 0 0 0 0 1 0 0 0 0 0
........................................................................................................................TCAGGGAATTAGTGGCTCTCA............................................................................................................................................................................................................................................ 21 3 4 0.25 1 1 0 0 0 0 0 0 0 0 0
........................................................................................................................TCAGGAAATTAGTGACTCTCC............................................................................................................................................................................................................................................ 21 3 4 0.25 1 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................ACTTAGTGACTCTCT............................................................................................................................................................................................................................................ 15 1 5 0.20 1 0 0 0 0 0 1 0 0 0 0
.....................................................................................TCAGTTAAGCGGAGAG.................................................................................................................................................................................................................................................................................... 16 2 20 0.15 3 0 0 0 0 2 0 0 0 0 1
...................................................................................................................................................................................................................................................................................................................................................ACTGCAGGTCCGGACCT..................... 17 2 7 0.14 1 0 0 0 0 1 0 0 0 0 0
......................................................................................................................ATTCAGTGAGTTAGTGAC................................................................................................................................................................................................................................................. 18 2 8 0.13 1 0 0 1 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................GTGCAACCGTTAATCGGAA............................................................................................ 19 3 9 0.11 1 0 0 0 0 0 0 0 1 0 0
..........................................................CATGGGCAAGTCAACGATGC........................................................................................................................................................................................................................................................................................................... 20 3 9 0.11 1 0 0 0 0 0 0 0 0 1 0
.................................................................AAGTCAAGGATGCTA......................................................................................................................................................................................................................................................................................................... 15 1 10 0.10 1 0 0 0 0 0 0 0 1 0 0
.................................................................................................................................................................................................................................................................................................................................................GCAGTGCAGGTACGGACCA..................... 19 3 12 0.08 1 0 0 0 0 0 1 0 0 0 0
............................................................................................................................................................................................................................................................................GCAAGCGTTAATCGGAT............................................................................................ 17 2 13 0.08 1 0 0 0 0 1 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................................................................ATGCGTAGCAGTGCTTGTC............................ 19 3 13 0.08 1 1 0 0 0 0 0 0 0 0 0
........................................................................................................................TCAGTCACTTATTGACTCTC............................................................................................................................................................................................................................................. 20 3 14 0.07 1 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................................................................................TTCGCAATGCAGGTCGGGA........................ 19 3 20 0.05 1 0 0 1 0 0 0 0 0 0 0

Anti-sense strand reads

GGAGCTTCGCGTCGAAGAACCTTGCTAGAGTGTCAGGCCGATATATACCGCACTCATCTTACCAGTTCAGTTCCTACGTTTGGCTAGTCCTTTCGCCTCTCTCATAAATTATAGTCACTTAGTCACTTAATCACTGAGAGACTTCTTTTGTCGTTGGTTATTTTCTTATAATATGAATTTGTTTTCATTTGTGGCATTGATTATTACTATTGGCCTTATCAACTAATTTAGAAAACTTAAGTCATACAAAGACCGAATATTAGCCAAACGTTGGTAATTAGCCTAGAAATTTTGTACATCAATTAGGATAGGTTAGTTTTGAAAATCTCGTACGCAGCGTCACGTCCAGGCCTGAAGCCGAGAGGTGGCGGGTGGCG
**************************************************..((((.((.(((.........((.(((((((((((.....((((..(((((((..(((((.(((.((...)).))))))))..)))))))......................((((...((((((....((((((.........((((((....((.....))...)))))).......)))))).....)))))).)))).))))...))))))))))).)).((((........)))).....((((......))))))).))...))))....************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 M024
male body
............................................................ACCCGTTCAGTTGCTACG........................................................................................................................................................................................................................................................................................................... 18 2 2 0.50 1 1 0 0 0
..................................................................................................................................................................................................................................................................................TAATTAGGCTAGAAAT....................................................................................... 16 1 3 0.33 1 1 0 0 0
..........................AGAGTGTCAGTCCGA................................................................................................................................................................................................................................................................................................................................................ 15 1 5 0.20 1 0 0 1 0
...............................................................................................................................TAATCACAGAGAGAC........................................................................................................................................................................................................................................... 15 1 5 0.20 1 0 1 0 0
..........................................................................................................................................AGACTTTCTTTGTCGTTGGTA.......................................................................................................................................................................................................................... 21 3 6 0.17 1 0 1 0 0
..............................TGGCAGGCCGAGATCTAC......................................................................................................................................................................................................................................................................................................................................... 18 3 20 0.10 2 0 0 0 2
........................................................................................................................................AGAGACTTCCTTTGTCA................................................................................................................................................................................................................................ 17 2 11 0.09 1 0 0 1 0
...........................................................................................................................................................................................................................................................................................................CCATTAGGATGGGATAGTT........................................................... 19 3 13 0.08 1 0 1 0 0
...............................................................................................................................................TCTTTTGTCGTTGGA........................................................................................................................................................................................................................... 15 1 18 0.06 1 1 0 0 0
............................................................ACCCGTTCAGTTGCTACGA.......................................................................................................................................................................................................................................................................................................... 19 3 20 0.05 1 1 0 0 0

Generated: 04/24/2015 at 12:33 AM