ID:

dsi_15631

 Coordinate:

3r:10128059-10128208 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-10.1 -10.0 -9.8

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

GAAAAAAATTATAATTTGTCCGGCAAAAGAAGTGTGCAATACAAATAAATGTATGTATTAAAAGTGCAATTGTACGACGATCGTCTCAAAAATGTACATTTAATCAAAGGACACGCAATAAACAAGCCGCTGGGGTCAAAGTGATTTGTGCGTGCAACAAAAAAACAATTGTTGTGTGAAGTGGACAGGCGCGCCAAAAGGGCTCAAAAAATGCCACCCACCGAAAGATGCCAAAGTTGGACTTACGAGA
***************************************************************(((((.(((.((((...))))..)))...)))))............................(((.....)))........********************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 M023
head
 SRR553486
Makindu_3 day-old ovaries
 M024
male body		 SRR902008
ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 M025
embryo
 SRR618934
dsim w501 ovaries
 M053
female body
 O001
Testis
 SRR553488
RT_0-2 hours eggs
.............ATTTGTCCGGCAAAAGAAG.......................................................................................................................................................................................................................... 19 0 1 3.00 3 0 3 0 0 0 0 0 0 0 0 0 0
.........TATAATTTGTCCGGCAAAAGTAGTG........................................................................................................................................................................................................................ 25 1 1 3.00 3 0 0 0 0 0 2 1 0 0 0 0 0
..............TTTGTCCGGCAAAAGTAGTGTGCAATA................................................................................................................................................................................................................. 27 1 1 2.00 2 0 0 0 0 2 0 0 0 0 0 0 0
..............TTTGTCCGGCAAAAGTAGTGT....................................................................................................................................................................................................................... 21 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
..........................................................................CGACGATCGTCTAACATATGT........................................................................................................................................................... 21 3 2 1.50 3 0 0 0 0 0 0 0 3 0 0 0 0
................TGTCCGGCAGAAGTAGTGTGT..................................................................................................................................................................................................................... 21 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................ATTTAATCAAAGGACACGCAG.................................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.................GTCCGGCAAAAGAAGTGTGCA.................................................................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.............ATTTGTCCGGCAAAAGAA........................................................................................................................................................................................................................... 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
..........ATAATTTGTCCGGCAAAAGAAGT......................................................................................................................................................................................................................... 23 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
...........................................................................................GTGTACATTTAATCAAAGGAC.......................................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................CAAAGTGATTTGTGCGTGCCC............................................................................................. 21 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................GTGCAATTGTACGACGATCGT...................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................GTTGTGTGAAGTGGACAGGCGTT......................................................... 23 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TAAACAAGCCGCTGGGGTCAAAGTGA.......................................................................................................... 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
..................................................................CAATTGTACGACGATCGTCTC................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.............ATTTGTCCGGCAAAAGAAGTG........................................................................................................................................................................................................................ 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
..............TTTGTCCGGCAAAAGTAGTG........................................................................................................................................................................................................................ 20 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
..............TTTGTCCGGCAAAAGAAGTGTGCA.................................................................................................................................................................................................................... 24 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
......AATTATAATTTGTCCGGC.................................................................................................................................................................................................................................. 18 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
..........................................................................................................................................................................................................................CACCGAAAGATGCCAAAGTTGGACTTAC.... 28 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
................................................................................................................................................................................TGAAGTGGACAGGCGCGCAT...................................................... 20 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.............ATTTGTCCGGCAAAAGAAGTGT....................................................................................................................................................................................................................... 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
....................CGGCAAAAGAAGTGTGCAATAC................................................................................................................................................................................................................ 22 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0
...............................................................GTGCAATTGTACGACGATCGTCTCAAA................................................................................................................................................................ 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
..................................................................................................TTTAATCAAAGGACACGCAGTAAACA.............................................................................................................................. 26 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1
.........TATAATTTGTCCGGCAAAAGAAGTGTGCAA................................................................................................................................................................................................................... 30 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
........TTATAATTTGTCCGGCAAAAGTAGTG........................................................................................................................................................................................................................ 26 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.......................................................................GTCCGACGATCGTCTCAATGAT............................................................................................................................................................. 22 3 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0
.........TATAATTTGTCCGGCAAAAGTAGTGTG...................................................................................................................................................................................................................... 27 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................AAAGATGCCAAAGGTGGACTT...... 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................ATCGTTGTGTGAAGTG................................................................... 16 1 2 0.50 1 0 0 0 0 0 0 0 0 1 0 0 0
.................................................................................................................................................TTGTGCGTGCAACAAA......................................................................................... 16 0 2 0.50 1 0 0 0 0 0 0 0 0 1 0 0 0
.......................................................................GTCCGACGATCCTCTCA.................................................................................................................................................................. 17 2 7 0.14 1 0 0 0 0 0 1 0 0 0 0 0 0
................................................................................................................................................TTTGGGCGTGGAGCAAAAAAA..................................................................................... 21 3 13 0.08 1 0 0 0 0 0 0 1 0 0 0 0 0
.........................................................................ACGACGATCGTCAAAAA................................................................................................................................................................ 17 2 13 0.08 1 1 0 0 0 0 0 0 0 0 0 0 0
...........................................................AAAAGTGAAATGGTACGA............................................................................................................................................................................. 18 2 13 0.08 1 0 0 1 0 0 0 0 0 0 0 0 0
.........................................................................ACGACGATCGTCAAAAAAAA............................................................................................................................................................. 20 3 18 0.06 1 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................................AGACGATCGACTCAAACAT............................................................................................................................................................. 19 3 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0
................................................................TGCTATAGTCCGACGATC........................................................................................................................................................................ 18 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................ACTAGCCGTTGGGGTC................................................................................................................. 16 2 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0

Anti-sense strand reads

CTTTTTTTAATATTAAACAGGCCGTTTTCTTCACACGTTATGTTTATTTACATACATAATTTTCACGTTAACATGCTGCTAGCAGAGTTTTTACATGTAAATTAGTTTCCTGTGCGTTATTTGTTCGGCGACCCCAGTTTCACTAAACACGCACGTTGTTTTTTTGTTAACAACACACTTCACCTGTCCGCGCGGTTTTCCCGAGTTTTTTACGGTGGGTGGCTTTCTACGGTTTCAACCTGAATGCTCT
**********************************************************************************************************(((((.(((.((((...))))..)))...)))))............................(((.....)))........*************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 GSM343915
embryo
 SRR553487
NRT_0-2 hours eggs
 M023
head
 O001
Testis
 SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
.........................................................................TGCTGCTAGCAGAGTTTTCACA........................................................................................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0
..............................................................................................................................................................................................................TTTTTACGGTGGGTGGCTTTCT...................... 22 0 1 1.00 1 1 0 0 0 0 0 0
................ACAGGCCGTTTTCATCACACG..................................................................................................................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0
.........................................................................................................................................................................................................................GGTGGCTTTCTACGGTTT............... 18 0 1 1.00 1 0 0 0 0 1 0 0
........................................................................ATGCTGCTAGCAGAGTTTTCACATGT........................................................................................................................................................ 26 1 1 1.00 1 0 0 0 0 0 1 0
..............................................................................................................................................................................................................TTTTTACGGTGGGTGGCTT......................... 19 0 1 1.00 1 1 0 0 0 0 0 0
.........................................................................TCCAGCTTGCAGAGTTTTTACAT.......................................................................................................................................................... 23 3 1 1.00 1 0 0 1 0 0 0 0
..................................................................GTTAACATGCTGCTAGCAGAG................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0
.......TAATATTAAACAGGCCGTTTTCT............................................................................................................................................................................................................................ 23 0 1 1.00 1 0 0 0 1 0 0 0
...............................................................................................................................................................................................................TTTTACGGTGGGTGGCTTTCT...................... 21 0 1 1.00 1 1 0 0 0 0 0 0
..................AGGCCGTTTTCTTCACACGTTAT................................................................................................................................................................................................................. 23 0 1 1.00 1 0 1 0 0 0 0 0
...............AAGAGGCCCTTTTCTTCA......................................................................................................................................................................................................................... 18 2 5 0.60 3 0 0 3 0 0 0 0
........................................................................................................................................................................................TGTCCGAGCGGTTTTCCCGACA............................................ 22 3 2 0.50 1 0 1 0 0 0 0 0
....................................................................................................................................................................................................TTTCCCGAGTGTTTTACGTGGGG............................... 23 3 2 0.50 1 0 1 0 0 0 0 0
.........................TTGCTTCACACGTTAT................................................................................................................................................................................................................. 16 1 6 0.17 1 0 0 0 0 0 0 1
................................................................AGGTTAATATGCTGCTA......................................................................................................................................................................... 17 2 12 0.08 1 0 0 1 0 0 0 0
..............................................................................................................................................................................................................TTTTTACGGTGAGAGGCTG......................... 19 3 20 0.05 1 1 0 0 0 0 0 0

Generated: 04/24/2015 at 10:29 AM