ID:

dsi_15627

 Coordinate:

3r:513339-513488 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-28.7 -28.6 -28.6

Flybase annnotation

five_prime_UTR [3r_513064_513312_-]; exon [3r_512686_513312_-]

No Repeatable elements found

Sense Strand Reads

----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------########################
CCATGTGGGCCAAAACGATCCAAACATATAGACATACGAACACATCCGGATCGTTATGTGGATGCCATTCAAACTATTCGTTCTCTCACTCGGTCGTCGATCCCCCGCACTCTCGCCGTGCTCAAAGTACTTGTGCATGTGTGACGCTGAACAGAGCAGAGCAAATTGAAAACGAAAATATTTTTAAATTGATTTTAAAGGCAGACATGATCGGGAGGCAGTGAGAACTGCACGCGACAACGGGCCGTGA
**************************************************(((((..((((...))))...........((((((((..((((.((((........((((...(((.(((((...)))))..)))...))))))))))))...))).)))))........)))))......(((((((.....)))))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 SRR553486
Makindu_3 day-old ovaries
 M024
male body		 O002
Head
 SRR553488
RT_0-2 hours eggs
 M025
embryo
 SRR902008
ovaries
 SRR902009
testis
 SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
......................................................................................................................................................................................................................................CACGCGACAACGGGCCGT.. 18 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................GGGAGGCAGTGAGAACTG.................... 18 0 1 2.00 2 1 0 1 0 0 0 0 0 0 0
............................................................................................................................................................................................................................GTGAGAACTGCACGCGACAACGGGCCG... 27 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................GCACGCGACAACGGGCCG... 18 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................AGACATGATCGGGAGGCAGTGAGAACTGC................... 29 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
................................................................................................TCGAGCCCCGTCACTCTCGCC..................................................................................................................................... 21 3 1 1.00 1 0 0 0 0 1 0 0 0 0 0
...........................................................................................................................................................................................................GACATGATCGGGAGGCAGTGAGAACTG.................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...........GAAACGATCCAAGCATATCGA.......................................................................................................................................................................................................................... 21 3 2 1.00 2 0 2 0 0 0 0 0 0 0 0
............AAACGATCCAAGCATATCGA.......................................................................................................................................................................................................................... 20 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................GCACGCGACAACGGGCCGT.. 19 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
.................................................................................................................................................................................................................ATCGGGAGGCAGTGAGAACTG.................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
.....................................................................................................................................TGCATGTGTGACGCTGAACAGAGC............................................................................................. 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................ACTGCACGCGACAACGGGC..... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...........AAAACGATCCAAGCATATCGA.......................................................................................................................................................................................................................... 21 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................GGGAGGCAGTGAGAACCGCACGC............... 23 1 1 1.00 1 0 0 0 0 0 0 0 1 0 0
............................................................................................................................................................................................................................GTGAGAACTGCACGCGACAACGGG...... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................TGTGCATGTGTGACGCTGAACAGAGC............................................................................................. 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
...............................ACATACGAACACATCCGGAT....................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
.............................................................................................................................................................................................................CATGATCGGGAGGCAGTGAGAACTG.................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................CTGCACGCGACAACGGGC..... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................TTTAAAGGAAGACATGATCGGGAGGC............................... 26 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0
............AAACGATCCAAGCATATCGAG......................................................................................................................................................................................................................... 21 3 2 0.50 1 0 1 0 0 0 0 0 0 0 0
..........AAAAACGATCCAAGCATATCG........................................................................................................................................................................................................................... 21 3 3 0.33 1 0 1 0 0 0 0 0 0 0 0
...........GAAACGATCCAAGCATATA............................................................................................................................................................................................................................ 19 2 3 0.33 1 0 1 0 0 0 0 0 0 0 0
.................................................................................................CGATCCCCGTCACTCTCGCCA.................................................................................................................................... 21 3 4 0.25 1 0 0 0 0 1 0 0 0 0 0
..............................................................................CGTTCTCTCAAGCGGTCGG......................................................................................................................................................... 19 3 6 0.17 1 0 0 0 0 0 0 0 0 1 0
............................................................................................................................AAGTACTCGTGCATG............................................................................................................... 15 1 13 0.08 1 0 0 0 0 0 0 0 0 0 1
........................................................................................................................CGCAAAGTACTCGTGCA................................................................................................................. 17 2 18 0.06 1 0 0 0 0 1 0 0 0 0 0
..........................................................................................................................................................................................................AGACATGATCGTGACTCA.............................. 18 3 20 0.05 1 0 0 1 0 0 0 0 0 0 0

Anti-sense strand reads

GGTACACCCGGTTTTGCTAGGTTTGTATATCTGTATGCTTGTGTAGGCCTAGCAATACACCTACGGTAAGTTTGATAAGCAAGAGAGTGAGCCAGCAGCTAGGGGGCGTGAGAGCGGCACGAGTTTCATGAACACGTACACACTGCGACTTGTCTCGTCTCGTTTAACTTTTGCTTTTATAAAAATTTAACTAAAATTTCCGTCTGTACTAGCCCTCCGTCACTCTTGACGTGCGCTGTTGCCCGGCACT
**************************************************(((((..((((...))))...........((((((((..((((.((((........((((...(((.(((((...)))))..)))...))))))))))))...))).)))))........)))))......(((((((.....)))))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 M023
head
 SRR553486
Makindu_3 day-old ovaries
 M025
embryo
 M053
female body
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 SRR1275487
Male larvae		 SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
 GSM343915
embryo
................................GTAGGCTTCTGTAGTCCTAG...................................................................................................................................................................................................... 20 3 6 770.83 4625 3158 1301 1 122 35 2 2 1 2 0 1
.................................TAGGCTTCTGTAGTCCTAG...................................................................................................................................................................................................... 19 3 20 69.95 1399 864 479 0 41 12 1 1 1 0 0 0
................................GTAGGCTTCTGTAGTCCTAGC..................................................................................................................................................................................................... 21 3 3 36.33 109 69 27 0 6 2 4 0 1 0 0 0
.................................TAGGCTTCTGTAGTCCTAGC..................................................................................................................................................................................................... 20 3 6 35.17 211 129 66 1 10 4 1 0 0 0 0 0
.................................TATGCTTCTGTAGTCCTAG...................................................................................................................................................................................................... 19 2 1 4.00 4 1 3 0 0 0 0 0 0 0 0 0
............TTTGCTAGGTTCGTATAGC........................................................................................................................................................................................................................... 19 2 1 4.00 4 0 0 4 0 0 0 0 0 0 0 0
.............TTGCTAGGTTCGTATAGCTC......................................................................................................................................................................................................................... 20 3 8 2.50 20 0 0 20 0 0 0 0 0 0 0 0
..................................AGGCTTCTGTAGTCCTAGC..................................................................................................................................................................................................... 19 3 13 2.08 27 11 13 0 0 1 1 1 0 0 0 0
...........TTTTGCTAGGTTCGTATAGCT.......................................................................................................................................................................................................................... 21 2 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0
............TTTGCTAGGTTCGTATAG............................................................................................................................................................................................................................ 18 2 3 2.00 6 0 0 6 0 0 0 0 0 0 0 0
...........TTTTGCTAGGTTCGTATAGC........................................................................................................................................................................................................................... 20 2 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0
.............TTGCTAGGTTCGTATAGCT.......................................................................................................................................................................................................................... 19 2 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0
..........TTTTTGCTAGGTTCGTATAGC........................................................................................................................................................................................................................... 21 3 3 2.00 6 0 0 5 0 0 0 1 0 0 0 0
.................................TATGCTTCTGTAGTCCTA....................................................................................................................................................................................................... 18 2 2 1.50 3 1 0 0 0 0 0 2 0 0 0 0
..........TTTTTGCTAGGTTCGTATA............................................................................................................................................................................................................................. 19 2 2 1.00 2 0 0 2 0 0 0 0 0 0 0 0
................................GTATGCTTCTGTAGTCCTA....................................................................................................................................................................................................... 19 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.............TTGCTAGGTTCGTATA............................................................................................................................................................................................................................. 16 1 3 1.00 3 0 0 3 0 0 0 0 0 0 0 0
..........................................GTAGGCCTAGCAATACAC.............................................................................................................................................................................................. 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
............TTTGCTAGGTTCGTATAGCT.......................................................................................................................................................................................................................... 20 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.............TTGCTAGGTTCGTATAGCTG......................................................................................................................................................................................................................... 20 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
................................GTATGCTTCTGTAGTCCTAG...................................................................................................................................................................................................... 20 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
............TTTGCTAGGTTCGTAT.............................................................................................................................................................................................................................. 16 1 6 1.00 6 0 0 5 0 0 0 0 0 0 1 0
................................GTAGGCTTCTGTAGGCCTAG...................................................................................................................................................................................................... 20 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...........CTTTGCTAGGTTCGTATAGC........................................................................................................................................................................................................................... 20 3 7 0.86 6 0 0 6 0 0 0 0 0 0 0 0
..............TGCTAGGTTCGTATA............................................................................................................................................................................................................................. 15 1 8 0.75 6 0 0 6 0 0 0 0 0 0 0 0
............TTTGCTAGGTTCGTATA............................................................................................................................................................................................................................. 17 1 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0
...........TTTTTCTAGGTTCGTATAGCT.......................................................................................................................................................................................................................... 21 3 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0
........CGCATTTGCCAGGTTTGTAT.............................................................................................................................................................................................................................. 20 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
..........TTTTTGCTAGGTTCGTATAGCT.......................................................................................................................................................................................................................... 22 3 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0
............TTTGCTAGGTTCGTATAGCTC......................................................................................................................................................................................................................... 21 3 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0
......................................................................TTTGATAGGCATGAGAGTCAG............................................................................................................................................................... 21 3 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0
...........CTTTGCTAGGTTTGTATAG............................................................................................................................................................................................................................ 19 2 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0
...................................................................................................TAGGGGGCGTCAGAG........................................................................................................................................ 15 1 5 0.40 2 0 0 1 0 0 1 0 0 0 0 0
................................GTATGCTTCTGTAGTCCT........................................................................................................................................................................................................ 18 2 3 0.33 1 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................TCGTTTAACTTGCGCTTTTA....................................................................... 20 2 3 0.33 1 0 0 0 0 0 1 0 0 0 0 0
..........TTTTTGCTAGGTTCGTATAG............................................................................................................................................................................................................................ 20 3 7 0.29 2 0 0 2 0 0 0 0 0 0 0 0
...............GCTAGGTTCGTATAGCT.......................................................................................................................................................................................................................... 17 2 15 0.27 4 0 0 4 0 0 0 0 0 0 0 0
................................GTAGGCTTTTGTAGTCCTAG...................................................................................................................................................................................................... 20 3 4 0.25 1 0 1 0 0 0 0 0 0 0 0 0
..............TGCTAGGTTCGTATAGCT.......................................................................................................................................................................................................................... 18 2 4 0.25 1 0 0 1 0 0 0 0 0 0 0 0
...................................TCCTTGTGTCGGCCTAGCGA................................................................................................................................................................................................... 20 3 5 0.20 1 0 0 0 0 0 0 0 0 0 1 0
................................GTACGCTTCTGTAGTCCTAG...................................................................................................................................................................................................... 20 3 5 0.20 1 0 1 0 0 0 0 0 0 0 0 0
.............TTGCTAGGTTCGTATAGCTT......................................................................................................................................................................................................................... 20 3 6 0.17 1 0 0 1 0 0 0 0 0 0 0 0
...............................TGTAGGCTTCTGTAGTCCTA....................................................................................................................................................................................................... 20 3 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0
..........TTTTTGCTAGGTTCGTAT.............................................................................................................................................................................................................................. 18 2 13 0.15 2 0 0 2 0 0 0 0 0 0 0 0
...............................TGTAGGCTTCTGTAGTCCT........................................................................................................................................................................................................ 19 3 16 0.13 2 0 2 0 0 0 0 0 0 0 0 0
..................................................................................................CTTGGGGGTGTGAGAGCG...................................................................................................................................... 18 2 9 0.11 1 0 0 0 0 0 0 0 0 1 0 0
.........................................................................................................................AGTTTCATGAAAACGT................................................................................................................. 16 1 10 0.10 1 0 0 0 0 0 1 0 0 0 0 0
...........TTTTTCTAGGTTCGTATAGC........................................................................................................................................................................................................................... 20 3 12 0.08 1 0 0 1 0 0 0 0 0 0 0 0
..........................GTATCAGGATGCTTGTGTA............................................................................................................................................................................................................. 19 3 13 0.08 1 0 0 0 0 0 0 1 0 0 0 0
......................................TTGTGTAGGCTTAGC..................................................................................................................................................................................................... 15 1 14 0.07 1 0 0 0 0 0 0 0 0 0 1 0
...............GCTAGGTTCGTATAGCTGA........................................................................................................................................................................................................................ 19 3 14 0.07 1 0 0 1 0 0 0 0 0 0 0 0
............TTTGCTAGGTTCGTA............................................................................................................................................................................................................................... 15 1 17 0.06 1 0 0 1 0 0 0 0 0 0 0 0
........................................................................................................GGCGTCAGAGCGGCAT.................................................................................................................................. 16 2 17 0.06 1 0 0 0 0 0 1 0 0 0 0 0
.................................................................................................................................................................................................................TAGCCCTCAGTCACTA......................... 16 2 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3r:513289-513538 - dsi_15627 C-CATGTGGGCCA------------AAACGATCCAAACATATAGACATAC-GAACACATCCGGAT--CG--T-TATGTGGATGCCATTCAAACTAT------------TCGTTC--------TCTCACT--------------CGGTC-GTCGATCC----------CCCGCA--------------------CTCT--CG-------CCGTGC---TCAA-AGTACTTGTGCAT--GTG----------T------GACGCTGAACAG--A-GCAG---AGCAAATTGAAA-------------------ACGAAAATATTTTTAAATTGATTTTAAAGGCAGACATGAT--CGG----GAGGC-AGTG-------AG----AACTGCACGCGACAACGGGCCGT------GA
droSec2 scaffold_6:679227-679476 - C-CATGTGGGCCA------------AAACGATCCAAACATATAGACATAC-GAAAACATCCGGAT--CG--T-TATGTGGATGCCATTCAAACTAT------------TCGTTC--------TCTCACT--------------CGGTC-GTCGATCC----------CCCGCA--------------------CTCT--CG-------CCGTGC---TCAA-CGTATTCGTGCAT--GTG----------T------GACGCTGAACAG--A-GCAG---AGCAAATTGAAA-------------------ACGAAAATATTTTTAAATTGATTTTAAAGGCAGACATGAT--CGG----GAGCC-AGTG-------AG----AACCGCACGCGACAACGGGCCGT------GA
dm3 chr3R:572113-572363 - C-CATGTGGGCTA------------AAACGATCCAAACATGAAGACATAC-GAAAACATCCGGAT--CG--T-TATGTGGATGCCATTCAAACTAT------------TCGTTC--------TCTCACT--------------CGGTCTGTCGATCC----------CCCGCA--------------------CTCT--CG-------CCGTGC---TCTA-AGTATTTGTGCAT--GTG----------T------GACGCTGAGCAG--A-GCAA---AGCAAATTGAAA-------------------ACGAAAATATTTTTAAATTGATTTTAAAGGCAGACATGAT--CGG----GAGGC-AGTG-------AG----AACCGCACGCGACAACGGGCCGT------GA
droEre2 scaffold_4770:882370-882620 - C-CGCGAGGGCTA-----------G-AATGAACCAAACATATAGACATAC-GAAAACATTCGGAT--CG--G-TGTGGGAATGCCATTCAAACTAT------------TCGTTC--------TCTCATT--------------CGGTGGGTCGATCC----------CCCGCA--------------------CTCT--CG-------CCGTGC---TTAA-AACATTTGTGCAT--GTG----------T------GACGATGAGCAG--A-GCAA---AGCAAATTGAAC-------------------AAGAAAATATTTTTAAATTGATTTTAAAGGCAGACATGAT--CGG----GAGGC-AGTG-------AG----AAACGCACGCGACAACAGATCGT------GA
droYak3 3R:887883-888132 - C-CGTGAGAGCTA------------AAATGATCCAAACATATAGAGA-AC-AAATACATCCGGAT--CG--T-TATGTGGATGCCATTCAAACTAT------------TCCTTC--------TCTCATT--------------CGGTGTGTCGATCC----------CCCGCA--------------------CTCT--CG-------CCGTGT---TCAA-AATATTAGTGTAT--GTG----------T------GACGCTGAGCAG--A-GCAA---AGCAAATTGAAA-------------------AAGAAAATATTTTTAAATTGATTTTAAAGGCAGACATGAT--CGG----GAGGC-AGTG-------AA----AAACGCGCACAACAGCGGGTCGT------GT
droEug1 scf7180000409759:508582-508840 - C-CATGAGGGCTA-----------GAAACGATCCAAACTCATAGTCATAC-GAAAACATCCGGAT--CG--T-TATGTGGACGCCATTCAATCTTA------------CAGCTC--------TCTCTCT--CTCACTGTCTATC----TGCCGGGG-----------CCCACA--------------------CGCT--CG-------CCTTAG---TGAACAATATTTGAGCAT--GTG----------T------GGCGCTGAGCGA--A-GCAA---AGCAAATTGAAA-------------------ACGAAAATATTTTTAAATTGATTTCAAAGACAGACAAGAT--CGG----GCGCC-GGCG-------AG----AAGAGT-CGCGGCTACGGGTCGC------GA
droBia1 scf7180000302411:299132-299375 - C-ATTAC-TACTA-----------GAAGCGATCCAAATTCATAGTCTTAC-AAAAACATCCGGAT--CG--C-GCTGTGGATGCCATTGAAAAT-T------------TAGCTC--------TCTTTC--------------------TGGCGGTTT----------CCGACA--------------------CTCT--CG-------CCTTGC---CCAC-GACATTTGTGCTT--GTG----------T------GCCGCTGAGCGG--A-GCAA---AGCAAATTGAAA-------------------ATGAAAATATTTTTAAATTGATTTCAAAGGCAGACAAGAT--CGG----GAGCT-GGTG-------AG----AAACGTGCACTGCGGCGGGTCGC------GA
droTak1 scf7180000415261:569325-569570 + C-AATGAGGGCTA-----------GAAACGATCCAAACTCATAGACATAC-AAAAACATCCGGAT--CG--T-TATGTGGATGCCATTCAAATTT-------------TCGCTC--------TCT--TT--------------C----GGTCGGTCC----------CCCACA--------------------CTCT--CG-------CCTTGC---CCAAAAACATTTGTGCTT--GTG----------T------GCCGCTGAGCGG--A-GCAA---AGCGAATTGAAA-------------------ACGAAAATATTTTTAAATTGATTTCAAAGACAGACAAGAT--CGG----GAGCT-AACG-------AG----AAACGTACGCGCCGACGGGTCGC------GA
droEle1 scf7180000491104:2334791-2335051 - C----------TA-----------GAAACGATCCAAAACCATAGTCATAC-AAAAACATCCGGAT--CA--T-TATGTGGATGGCATTCAAACTTT------------TCGCTC--------ACTCTCTTTCTCTCTCTCTCTC--TGTGGCGGTTT----------CCCACA--------------------CTCTCTCG-------CCTTAA---CCAAAATCATTTGTGCAT--GTG----------T------GACGCTGAGCGG--A-GCAAAAAGGCAAATTGAAA-------------------ACGAAAATATTTTTAAATTGATTTCAAAGACAGACAAGAT--CGG----GAGCC-AGCG-------AG----AAGTGTACGCGGCGACGGGTCGC------GA
droRho1 scf7180000778241:14650-14901 - C-GACGAGGGCTA-----------GAAACGATCCAAACTCATAGTTATAC-AAAAACATCCGGAT--CG--T-TATGTGGATGGCATTCAAATTT-------------ACGCTC--------TCTCTCT--------------CTCTCTGCCGGTTC----------CCCACA--------------------ATCT--CG-------CCATAC---CCAAAAACATTTGTGCAT--GTG----------T------GACGCTGAGCGG--A-GCAA---AGCAAATTGAAA-------------------ACGAAAATATTTTTAAATTGATTTCAAAGACAGACAAGAT--CGG----GAGCC-AGCG-------AG----GAACGTACGCGGCAACGGGTCGC------GA
droFic1 scf7180000453903:173715-173958 - C-CATGCGGCCTG-----------CAAACGATCCCAACTAGCAGTAGTTC-AAAAACATCCGGAA--CG--T--GTGTGGATGCCATTCAAACATT------------TCGCTC--------TCTCTC--------------------TGTCGGTT-----------CCCACA--------------------CTCT--CA-------CCCTGC---CCGAAAACATTCGTGCAT--GTG----------G------GACGCCGAGCGG--A-GCAA---GGCAAATTGGAA-------------------ACGAAAATATTTTTAAATTGATTTTAAAGACAGACAAGAT--CGG----GAGCC-AGCA-------AG----AAGCGTACGCCGC-ACGGGTCGC------GA
droKik1 scf7180000302634:260833-261079 - ----TGTGGCC-G-----------CAGGCGATTCGATCGCTCAGTCTCAA-AAAAACATCCGGAG--CGCGTTTGTGTGGATGCCATTCGAATTT-------------TCTCG--------------CT--------------CTCTGTGCCGGTCG----------CCCACT--------------------GTCTCTCC-------CC-TAA---GCAGAGGCATTATCGTGT--GTG----------C------GACACTGAGCGGG-A-GCAA---ACCAAATTGAAA-------------------ACGAAAATATTTTTAAATTGATTTCAAAGACAGACAAGAT--CGG----GAGCC-AGCG-------AG----AAACGCACGCGGCGCTGGGTCTC------GA
droAna3 scaffold_13340:22793917-22794135 - C------------------------------------------------------ACAGCCGGAT--AG--TTTCTGTGGATGTTGTTCAAACTTA------------TCTCA--------------CT--------------C----------TCC----------CCCACA--------------------CAGT--CA-------CCGAGT---C--------ACCGAGCAT--GTGTTAGTTTGTGGGACGACGGCGCCGAGCGGAAAGGCAA---AGCAAATTGAAA-------------------ACGAAAATATTTTTAAATTGATTTCAAAGACAGACAAGAT--CGG----GAGCC-AGCAGCCAGTGTAAAACGAACGCACACGGTGCCGGGTCGC------TA
droBip1 scf7180000396424:1068573-1068816 - G-CATGAGGGCTA-----------G--CCGATCC---------------------ACAGCCGGAT--AG--TTTCTGTGGATGTTGTTCAAACTTA------------TCTCA--------------CT--------------C----------TCC----------CCCACA--------------------CAGC--CAGCACGGCCCGACTCACGGAAATTCGTTCGAGCAT--GTGCTAGTTTGTGTGACGACGGCGGTGAGCGGAAA-GCAA---AGCAAATTGAAA-------------------ACGAAAATATTTTTAAATTGATTTCAAAGACAGACAAGAT--CGG----GAGCC-AGCG-------TA----GAACGCACACGGCGCCGGGTCGC------GA
dp5 2:24148384-24148637 - CCCATGTGGGCTA-----------A-AA--ATCCCA------CGAGACCCGAAACACATCCGGAT--CG--TTTTTGTGTATGCCCCTCGAACAGGCAGCGACGTTCCTC--------------------------------------TGACAAACA----------CACACACAAACACTCATA------CAAATA---------------------CAAATACACACATGAAT--GCACTGAAATATAC------GACGCT-----------CTG---AGCAAATTGAAA-------------------ACAAAAATATTTTTAAATTGATTTCAAAGACAGACCCGAA--CGGACCGAAGCC-AGCG-------AG----AAACGCACGCGGCGCCGGGTCGC------TA
droPer2 scaffold_3:6920379-6920638 - CCCATGTGGGCTG-----------A-AA--ATCCCA------CGAGACCCGAAACACATCCGGAT--CG--TTTTTGTGTATGCCCCTCGAACAGGCAGCGACGTTCCTC--------------------------------------TGACAAACA----------CAAACACAAACACTAATACAAATACAAATA---------------------CAAATACACACATGAAT--GCACTGAAATATAC------GACGCT-----------CTG---AGCAAATTGAAA-------------------ACAAAAATATTTTTAAATTGATTTCAAAGACAGACCCGAA--CGGACCGGAGCC-AGCG-------AG----AAACGCACGCGGCGCCGGGTCGC------TA
droWil2 scf2_1100000004943:15119663-15119907 + --------------------------------------------------------------GAT--CA--T-TTTGTGGAAGCCATTCAAATTAA-------------CGCTCAAACAAACACACACA---TA----------TCTC-GACACTCA----------CACACA----CACACACACACACACACACA--CA-------CC------------TACATACATGCATACGTC----------A------AATGCTCACCGA--A-AAAA---AGAAAAACATCG----ACGGGGAGAACGTACAGAAAAATATTTTTAAATTGATTTCAAAGACAGACGACAA--CGG----AACGCCACGCGGTAACGTA------AC--GCGCTGTGCCGCACCGCTGCGTATA
droVir3 scaffold_12855:8312387-8312578 - --------------------------------------------------------------GAT--CG--T-TTTGTGGATGTCATTCGAATAGA------------CAGCGC--------TCTCTCT--------------CA---TCTCGGTCTCTCCCTCTCTCACACA--------------------------------------CAC---TC-A-CACATGCGTACAC--ACG----------T------TGCGGT--------C-GCAC---GGCAAATTGAAA-------------------CGAAAAATATTTTTAAATTGATTTCAAACAACGACACGAAACGTG---GAAGTC-A-AG-------AC----AAACGCGAGCGG----ACGACGC------GT
droMoj3 scaffold_6540:23535716-23535908 - --------------------------------------------------------------GAT--CG--C-TTTGTGGATGTCATTCGAATAAGCAGCGATG----CGGCTC--------TCCCTCT--CTA--------------TCTCACTCT--------CTCACATA----CACC------------------------------------TATA-CATATACACACAC--ACA----------T------GACGCCGT------C-GTAA---GGCGAATTGAAA------------------CGAAAAAATATTTTTAAATTGATTTCAAACAACGACACGAAACGTG---AAAGAC-A-AG-------AC----AAACGAGAGCGG---------AC------GA
droGri2 scaffold_15074:4913161-4913403 - A-CTTGGGGGTTGAGTTTGTTCCACAAGCAAGCAGAGAAC------ACAT--AAAACGTGCACAGATCA--T-TTTGTGGATGTCATTCGAATAAGTACCGTC-----TCTGCC----CCTCTCTCTCT--CTCACT------TGCTATCCTCATC--------------TCG--------------------G----------------------------TCTCTCCCTGCCT--GTG----------T------AGTTCTCA-----------------CAAATTGAAACGAA-------------AAACAAAAATATTTTTAAATTGATTTCAAACAACGACGAAGC--GCA----GAGCA-AGCA-------AG----ACACA--------AACAAGCGGC------AC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
C-CATGTGGGCCA------------AAACGATCCAAACATATAGACATAC-GAACACATCCGGAT--CG--T-TATGTGGATGCCATTCAAACTAT------------TCGTTC--------TCTCACT--------------CGGTC-GTCGATCC----------CCCGCA--------------------CTCT--CG-------CCGTGC---TCAA-AGTACTTGTGCAT--GTG----------T------GACGCTGAACAG--A-GCAG---AGCAAATTGAAA-------------------ACGAAAATATTTTTAAATTGATTTTAAAGGCAGACATGAT--CGG----GAGGC-AGTG-------AG----AACTGCACGCGACAACGGGCCGT------GASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
....................................................................................................................................................................................................................................................................................................................................................................................................CACGCGACAACGGGCCGT------..1812.00220000000000000000
..................................................................................................................................................................................................................................................................................................................................................................GG----GAGGC-AGTG-------AG----AACTG..........................1812.00211000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................GTG-------AG----AACTGCACGCGACAACGGGCCG.........2712.00220000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................GCACGCGACAACGGGCCG.........1812.00220000000000000000
......................................................................................................................................................................................................................................................................................................................................................AGACATGAT--CGG----GAGGC-AGTG-------AG----AACTGC.........................2911.00100100000000000000
.......................................................................................................................................................................................................................................................................................................................................................GACATGAT--CGG----GAGGC-AGTG-------AG----AACTG..........................2711.00110000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................GCACGCGACAACGGGCCGT------..1911.00100000100000000000
.............................................................................................................................................................................................................................................................................................................................................................AT--CGG----GAGGC-AGTG-------AG----AACTG..........................2111.00101000000000000000
......................................................................................................................................................................................................................................TGCAT--GTG----------T------GACGCTGAACAG--A-GC...........................................................................................................................................2411.00100000001000000000
................................................................................................................................................................................................................................................................................................................................................................................................ACTGCACGCGACAACGGGC...........1911.00110000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................GTG-------AG----AACTGCACGCGACAACGGG............2411.00110000000000000000
....................................................................................................................................................................................................................................TGTGCAT--GTG----------T------GACGCTGAACAG--A-GC...........................................................................................................................................2611.00100000001000000000
............................................ACATAC-GAACACATCCGGAT--...........................................................................................................................................................................................................................................................................................................................................................2011.00100000100000000000
.........................................................................................................................................................................................................................................................................................................................................................CATGAT--CGG----GAGGC-AGTG-------AG----AACTG..........................2511.00110000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................CTGCACGCGACAACGGGC...........1811.00110000000000000000
droSec2
C-CATGTGGGCCA------------AAACGATCCAAACATATAGACATAC-GAAAACATCCGGAT--CG--T-TATGTGGATGCCATTCAAACTAT------------TCGTTC--------TCTCACT--------------CGGTC-GTCGATCC----------CCCGCA--------------------CTCT--CG-------CCGTGC---TCAA-CGTATTCGTGCAT--GTG----------T------GACGCTGAACAG--A-GCAG---AGCAAATTGAAA-------------------ACGAAAATATTTTTAAATTGATTTTAAAGGCAGACATGAT--CGG----GAGCC-AGTG-------AG----AACCGCACGCGACAACGGGCCGT------GASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..........................................................................................................................................................................................................................................................................................................................................................................................G----AACCGCACGCGACAACGGGCCG.........2313.0030102
..................................................................................................................................................................................................................................................................................................................................................................GG----GAGCC-AGTG-------AG----AACCG..........................1812.0021001
................................................................................................................................................................................................................................................................................................................................................................................................ACCGCACGCGACAACGGG............1812.0020011
..........................................................................................................................................................................................................................................................................................................................................................................GCC-AGTG-------AG----AACCGCACGCGA...................2111.0010100
.....................................................................................................................................................................................................................................................................................................................................AAATTGATTTTAAAGGCAGA.....................................................................2011.0010001
................................................................................................................................................................................................................................................................................................................................................................................................ACCGCACGCGACAACGGGCCGT------G.2311.0010010
......................................................................................................................................................................................................................................................................................................................................................AGACATGAT--CGG----GAGCC-AG..............................................1911.0010010
...................................................................................................................................................................................................................................................................................................................................................................................................GCACGCGACAACGGGCCG.........1811.0010001
......................................................................................................................................................................................................................................................................................................................................................AGACATGAT--CGG----GAGCC-AGTG-------AG----...............................2311.0010001
..........................................................................................................................................................................................................................................................................................................................................................................GCC-AGTG-------AG----AACCGCACGC.....................1911.0010010
..........................................................................................................................................................................................................................................................................................................................................................................................G----AACCGCACGCGACAACGGGC...........2111.0011000
..................................................................................................................................................................................................................................................................................................................................................AGGCAGACATGAT--CGG----GAG...................................................1911.0010100
................................................................................................................................................................................................................................................................................................................................................................................................ACCGCACGCGACAACGGGCCG.........2111.0010001
dm3
C-CATGTGGGCTA------------AAACGATCCAAACATGAAGACATAC-GAAAACATCCGGAT--CG--T-TATGTGGATGCCATTCAAACTAT------------TCGTTC--------TCTCACT--------------CGGTCTGTCGATCC----------CCCGCA--------------------CTCT--CG-------CCGTGC---TCTA-AGTATTTGTGCAT--GTG----------T------GACGCTGAGCAG--A-GCAA---AGCAAATTGAAA-------------------ACGAAAATATTTTTAAATTGATTTTAAAGGCAGACATGAT--CGG----GAGGC-AGTG-------AG----AACCGCACGCGACAACGGGCCGT------GASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
......................................................................................................................................................................................................................................................................................................................................................AGACATGAT--CGG----GAGGC-AGT.............................................2017.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100001000410000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................ACGCGACAACGGGCCGT------G.1815.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000001100000000100000000000000000000000000
.........................................................................TATGTGGATGCCATTCAAACTAT------------TCGT..............................................................................................................................................................................................................................................................................................................2715.0050000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000400000
..................................................................................................................................................................................................................................................................................................................................................................GG----GAGGC-AGTG-------AG----AACCG..........................1814.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000010000000100
.................................................................................................................................................................................................................................................................GACGCTGAGCAG--A-GCAA---AGCAAATTG.............................................................................................................................2613.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................ACCGCACGCGACAACGGG............1813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................CACGCGACAACGGGCCGT------GA2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................AAAGGCAGACATGAT--CGG----......................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000010000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................AAATTGATTTTAAAGGCAGA.....................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000
......................................................................................................................................................................................................................................................................................................................................................AGACATGAT--CGG----GAGGC-AGTG-------.....................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000
......................................................................................................................................................................................................................................................................................................................................................AGACATGAT--CGG----GAGGC-A...............................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000
...............................................................................................................................................................................................................................................G----------T------GACGCTGAGCAG--A-GCA..........................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000
..................................................................................................................................................................................................................................TTTGTGCAT--GTG----------T------GACGCTGAGCAG--A-.............................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................AGGCAGACATGAT--CGG----GA....................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000100000000000000000000
......................................................................................................................................................................................................................................................................................................................................................AGACATGAT--CGG----GAGGC-AG..............................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................GCAGACATGAT--CGG----GAGGC-AGTG-------AG----...............................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100001000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................GCACGCGACAACGGGCCG.........1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
.......................................................................................TCAAACTAT------------TCGTTC--------TCTCACT--------------CG.............................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................AACCGCACGCGACAACGGGCCG.........2211.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................GTTC--------TCTCACT--------------CGGTCTGTC......................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................TCCGGAT--CG--T-TATGTGGAT............................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................TGAT--CGG----GAGGC-AGTG-------AG----...............................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................GCAG--A-GCAA---AGCAAATTG.............................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000
.......................................TGAAGACATAC-GAAAACATCCGGAT--CG--T-.....................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...................................................................................................................................................................................................................................................................................................................................................................................................GCACGCGACAACGGGCCGT------GA2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................GGCAGACATGAT--CGG----GAGGC-AG..............................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................AT--CGG----GAGGC-AGTG-------AG----AACCGCAC.......................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000
.........................................................................................................................................................................................................................TCTA-AGTATTTGTGCAT--G................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
..........................................................................................................................................................................................................................................................................................CAAATTGAAA-------------------ACGAAAATATT............................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................AT--GTG----------T------GACGCTGAGCAG--A-GCAA---AG....................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
..........................................................................................................................................................................................................................................................................................................................................................ATGAT--CGG----GAGGC-AGTG-------A....................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................AACCGCACGCGACAACGGGC...........2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................CG--T-TATGTGGATGCCATTCAAACTA...............................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................GACATGAT--CGG----GAGGC-AGTG-------AG----...............................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................AGACATGAT--CGG----GAGGC-AGC.............................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
......................................................................................................................................................................................................................................................................................................................................................AGACATGAT--CGG----GAGGC-AGTG-------AG----AACC...........................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................ACCGCACGCGACAACGGGCCG.........2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................CATGAT--CGG----GAGGC-AGTG-------AG----A..............................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
..................................................................................................................................................................................................TCT--CG-------CCGTGC---TCTA-AGTATTTGTGC.....................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
................................................................................................................................................................................................................................TATTTGTGCAT--GTG----------T------GACGCTGAGCAG--A-.............................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................ACGCGACAACGGGCCGT------GA1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................AGACATGAT--CGG----GAGGC-AGTG-------A....................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................CGCACGCGACAACGGGCC..........1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................GAGGC-AGTG-------AG----AACCGCACGCGACAAC...............2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................AAACATCCGGAT--CG--T-TATGTG...............................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
.............................................................................................................CGTTC--------TCTCACT--------------CGGTCTGTCGATC..................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................AGTG-------AG----AACCGCACGCGACA.................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................CCGCACGCGACAACGGGC...........1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................TCCGGAT--CG--T-TATGTGGATGCCATTCAAAC.................................................................................................................................................................................................................................................................................................................................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................AAACATCCGGAT--CG--T-TATGTGG..............................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................ATGTGGATGCCATTCAAACTAT------------TCGT..............................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...............................................TAC-GAAAACATCCGGAT--CG--T-TATGTGGA.............................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................AAATTGATTTTAAAGGCAGACATG.................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000
...............................................................................................T------------TCGTTC--------TCTCACT--------------CGGTCTGTCGA....................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................T--CGG----GAGGC-AGTG-------AG----AACCGCACGC.....................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................GTGCAT--GTG----------T------GACGCTGAGCAG--A-.............................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................G-------AG----AACCGCACGCGACAACGGGCCG.........2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000
........................................................................................CAAACTAT------------TCGTTC--------TCTCACT--------------CGG............................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................AGACATGAT--CGG----GAGGC-AGTG-------AG----...............................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................AGGC-AGTG-------AG----AACCGCACG......................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000
.........................................................................TATGTGGATGCCATTCAAA..................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................TCTCACT--------------CGGTCTGTCGATCC----------CCCGCA--------------------CT...........................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..............................................................................................................GTTC--------TCTCACT--------------CGGTCTG........................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................TG-------AG----AACCGCACGCGACAACGGGCC..........2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................TAAAGGCAGACATGAT--CGG----GAGGC-AGT.............................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................AGACATGAT--CGG----GAGGC-AGTA-------TC----...............................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................AAATTGATTTTAAAGGCA.......................................................................1820.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000
droEre2
C-CGCGAGGGCTA-----------G-AATGAACCAAACATATAGACATAC-GAAAACATTCGGAT--CG--G-TGTGGGAATGCCATTCAAACTAT------------TCGTTC--------TCTCATT--------------CGGTGGGTCGATCC----------CCCGCA--------------------CTCT--CG-------CCGTGC---TTAA-AACATTTGTGCAT--GTG----------T------GACGATGAGCAG--A-GCAA---AGCAAATTGAAC-------------------AAGAAAATATTTTTAAATTGATTTTAAAGGCAGACATGAT--CGG----GAGGC-AGTG-------AG----AAACGCACGCGACAACAGATCGT------GASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...................................................................................................................................................................................................................................................................................................................................................................................................GCACGCGACAACAGATCG.........1811.0010000010
................................................................................................................................................................................................................................................................................................................................................AAAGGCAGACATGAT--CGG----......................................................1811.0010000100
..............................................................................................................................................................................................................................................................................................................................................................T--CGG----GAGGC-AGTG-------AG----AAACGCA........................2211.0011000000
droYak3
C-CGTGAGAGCTA------------AAATGATCCAAACATATAGAGA-AC-AAATACATCCGGAT--CG--T-TATGTGGATGCCATTCAAACTAT------------TCCTTC--------TCTCATT--------------CGGTGTGTCGATCC----------CCCGCA--------------------CTCT--CG-------CCGTGT---TCAA-AATATTAGTGTAT--GTG----------T------GACGCTGAGCAG--A-GCAA---AGCAAATTGAAA-------------------AAGAAAATATTTTTAAATTGATTTTAAAGGCAGACATGAT--CGG----GAGGC-AGTG-------AA----AAACGCGCACAACAGCGGGTCGT------GTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
......................................................................................................................................................................................................................................................................................................................................................AGACATGAT--CGG----GAGGC-AGT.............................................2011.00100000010000
....................................................................................................................................................................................................................................................................................................................................................GCAGACATGAT--CGG----GAGGC-AGTG-------AA----A..............................2611.00110000000000
..................................................................................................................................................................................................................................................................................................................................................AGGCAGACATGAT--CGG----GA....................................................1811.00100010000000
droEug1
C-CATGAGGGCTA-----------GAAACGATCCAAACTCATAGTCATAC-GAAAACATCCGGAT--CG--T-TATGTGGACGCCATTCAATCTTA------------CAGCTC--------TCTCTCT--CTCACTGTCTATC----TGCCGGGG-----------CCCACA--------------------CGCT--CG-------CCTTAG---TGAACAATATTTGAGCAT--GTG----------T------GGCGCTGAGCGA--A-GCAA---AGCAAATTGAAA-------------------ACGAAAATATTTTTAAATTGATTTCAAAGACAGACAAGAT--CGG----GCGCC-GGCG-------AG----AAGAGT-CGCGGCTACGGGTCGC------GASizeHit CountTotal NormTotal
No Reads
droBia1
C-ATTAC-TACTA-----------GAAGCGATCCAAATTCATAGTCTTAC-AAAAACATCCGGAT--CG--C-GCTGTGGATGCCATTGAAAAT-T------------TAGCTC--------TCTTTC--------------------TGGCGGTTT----------CCGACA--------------------CTCT--CG-------CCTTGC---CCAC-GACATTTGTGCTT--GTG----------T------GCCGCTGAGCGG--A-GCAA---AGCAAATTGAAA-------------------ATGAAAATATTTTTAAATTGATTTCAAAGGCAGACAAGAT--CGG----GAGCT-GGTG-------AG----AAACGTGCACTGCGGCGGGTCGC------GASizeHit CountTotal NormTotal
No Reads
droTak1
C-AATGAGGGCTA-----------GAAACGATCCAAACTCATAGACATAC-AAAAACATCCGGAT--CG--T-TATGTGGATGCCATTCAAATTT-------------TCGCTC--------TCT--TT--------------C----GGTCGGTCC----------CCCACA--------------------CTCT--CG-------CCTTGC---CCAAAAACATTTGTGCTT--GTG----------T------GCCGCTGAGCGG--A-GCAA---AGCGAATTGAAA-------------------ACGAAAATATTTTTAAATTGATTTCAAAGACAGACAAGAT--CGG----GAGCT-AACG-------AG----AAACGTACGCGCCGACGGGTCGC------GASizeHit CountTotal NormTotal
No Reads
droEle1
C----------TA-----------GAAACGATCCAAAACCATAGTCATAC-AAAAACATCCGGAT--CA--T-TATGTGGATGGCATTCAAACTTT------------TCGCTC--------ACTCTCTTTCTCTCTCTCTCTC--TGTGGCGGTTT----------CCCACA--------------------CTCTCTCG-------CCTTAA---CCAAAATCATTTGTGCAT--GTG----------T------GACGCTGAGCGG--A-GCAAAAAGGCAAATTGAAA-------------------ACGAAAATATTTTTAAATTGATTTCAAAGACAGACAAGAT--CGG----GAGCC-AGCG-------AG----AAGTGTACGCGGCGACGGGTCGC------GASizeHit CountTotal NormTotal
No Reads
droRho1
C-GACGAGGGCTA-----------GAAACGATCCAAACTCATAGTTATAC-AAAAACATCCGGAT--CG--T-TATGTGGATGGCATTCAAATTT-------------ACGCTC--------TCTCTCT--------------CTCTCTGCCGGTTC----------CCCACA--------------------ATCT--CG-------CCATAC---CCAAAAACATTTGTGCAT--GTG----------T------GACGCTGAGCGG--A-GCAA---AGCAAATTGAAA-------------------ACGAAAATATTTTTAAATTGATTTCAAAGACAGACAAGAT--CGG----GAGCC-AGCG-------AG----GAACGTACGCGGCAACGGGTCGC------GASizeHit CountTotal NormTotal
No Reads
droFic1
C-CATGCGGCCTG-----------CAAACGATCCCAACTAGCAGTAGTTC-AAAAACATCCGGAA--CG--T--GTGTGGATGCCATTCAAACATT------------TCGCTC--------TCTCTC--------------------TGTCGGTT-----------CCCACA--------------------CTCT--CA-------CCCTGC---CCGAAAACATTCGTGCAT--GTG----------G------GACGCCGAGCGG--A-GCAA---GGCAAATTGGAA-------------------ACGAAAATATTTTTAAATTGATTTTAAAGACAGACAAGAT--CGG----GAGCC-AGCA-------AG----AAGCGTACGCCGC-ACGGGTCGC------GASizeHit CountTotal NormTotal
No Reads
droKik1
----TGTGGCC-G-----------CAGGCGATTCGATCGCTCAGTCTCAA-AAAAACATCCGGAG--CGCGTTTGTGTGGATGCCATTCGAATTT-------------TCTCG--------------CT--------------CTCTGTGCCGGTCG----------CCCACT--------------------GTCTCTCC-------CC-TAA---GCAGAGGCATTATCGTGT--GTG----------C------GACACTGAGCGGG-A-GCAA---ACCAAATTGAAA-------------------ACGAAAATATTTTTAAATTGATTTCAAAGACAGACAAGAT--CGG----GAGCC-AGCG-------AG----AAACGCACGCGGCGCTGGGTCTC------GASizeHit CountTotal NormTotal
No Reads
droAna3
C------------------------------------------------------ACAGCCGGAT--AG--TTTCTGTGGATGTTGTTCAAACTTA------------TCTCA--------------CT--------------C----------TCC----------CCCACA--------------------CAGT--CA-------CCGAGT---C--------ACCGAGCAT--GTGTTAGTTTGTGGGACGACGGCGCCGAGCGGAAAGGCAA---AGCAAATTGAAA-------------------ACGAAAATATTTTTAAATTGATTTCAAAGACAGACAAGAT--CGG----GAGCC-AGCAGCCAGTGTAAAACGAACGCACACGGTGCCGGGTCGC------TASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
G-CATGAGGGCTA-----------G--CCGATCC---------------------ACAGCCGGAT--AG--TTTCTGTGGATGTTGTTCAAACTTA------------TCTCA--------------CT--------------C----------TCC----------CCCACA--------------------CAGC--CAGCACGGCCCGACTCACGGAAATTCGTTCGAGCAT--GTGCTAGTTTGTGTGACGACGGCGGTGAGCGGAAA-GCAA---AGCAAATTGAAA-------------------ACGAAAATATTTTTAAATTGATTTCAAAGACAGACAAGAT--CGG----GAGCC-AGCG-------TA----GAACGCACACGGCGCCGGGTCGC------GASizeHit CountTotal NormTotal
No Reads
dp5
CCCATGTGGGCTA-----------A-AA--ATCCCA------CGAGACCCGAAACACATCCGGAT--CG--TTTTTGTGTATGCCCCTCGAACAGGCAGCGACGTTCCTC--------------------------------------TGACAAACA----------CACACACAAACACTCATA------CAAATA---------------------CAAATACACACATGAAT--GCACTGAAATATAC------GACGCT-----------CTG---AGCAAATTGAAA-------------------ACAAAAATATTTTTAAATTGATTTCAAAGACAGACCCGAA--CGGACCGAAGCC-AGCG-------AG----AAACGCACGCGGCGCCGGGTCGC------TASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.................................................................................................................................................................................................................................................................................................................................................................CGGACCGAAGCC-AGCG-------AG----AAACG..........................2311.0010000000001
........................................................................................................................................................................................................................................................................................................................................................................AAGCC-AGCG-------AG----AAACGCACGCGG...................2311.0010100000000
...................................................................................................................................................................................................................................................................................................................................................GACAGACCCGAA--CGGACCGAA....................................................2111.0010000001000
.................................................................................................................................................................................................................................................................................................................................................................CGGACCGAAGCC-AGCG-------AG----AAACGCA........................2511.0010000000010
........................................................................................CGAACAGGCAGCGACGTTCCT.................................................................................................................................................................................................................................................................................................................2111.0010100000000
..........................................................................................................................................................................................................................................................................................................................................GATTTCAAAGACAGACCCGAA--CG...........................................................2311.0010000001000
.....................................................................................................................................................................................................................................ATGAAT--GCACTGAAATATAC------GAC..........................................................................................................................................................2311.0010000000001
.........................................................................................................................................................................................................................................................................................................................................................CCCGAA--CGGACCGAAGCC-AGCG-------AG----...............................2411.0010010000000
................................................................................................................................................................................................................................................................................................................................................................................CG-------AG----AAACGCACGCGGCGCCG..............2111.0010100000000
.................................................................................................................................................................................................AATA---------------------CAAATACACACATGAAT--.................................................................................................................................................................................2111.0010000010000
.......................................................................................................................................................CAAACA----------CACACACAAACACTC........................................................................................................................................................................................................................................2120.5010000000010
droPer2
CCCATGTGGGCTG-----------A-AA--ATCCCA------CGAGACCCGAAACACATCCGGAT--CG--TTTTTGTGTATGCCCCTCGAACAGGCAGCGACGTTCCTC--------------------------------------TGACAAACA----------CAAACACAAACACTAATACAAATACAAATA---------------------CAAATACACACATGAAT--GCACTGAAATATAC------GACGCT-----------CTG---AGCAAATTGAAA-------------------ACAAAAATATTTTTAAATTGATTTCAAAGACAGACCCGAA--CGGACCGGAGCC-AGCG-------AG----AAACGCACGCGGCGCCGGGTCGC------TASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.............................................................................................................................................................................................................................................................................................................................................................AA--CGGACCGGAGCC-AGCG-------AG----AAACG..........................2512.002200000
....................................................................................CCCTCGAACAGGCAGCGACGTTC...................................................................................................................................................................................................................................................................................................................2311.001010000
..........................................................................................................................................................................................................................................................C------GACGCT-----------CTG---AGCAAATTGA............................................................................................................................2011.001000001
.........................................................................................................................................................................................................................................................................................................................................................CCCGAA--CGGACCGGAGCC-................................................1811.001100000
.................................................................................................................................................................................................................................................................................................................................................................CGGACCGGAGCC-AGCG-------AG----...............................1811.001000010
.............................................................................................................................................................................................................................................................................................................................................TTCAAAGACAGACCCGAA--CGGACC.......................................................2411.001100000
droWil2
--------------------------------------------------------------GAT--CA--T-TTTGTGGAAGCCATTCAAATTAA-------------CGCTCAAACAAACACACACA---TA----------TCTC-GACACTCA----------CACACA----CACACACACACACACACACA--CA-------CC------------TACATACATGCATACGTC----------A------AATGCTCACCGA--A-AAAA---AGAAAAACATCG----ACGGGGAGAACGTACAGAAAAATATTTTTAAATTGATTTCAAAGACAGACGACAA--CGG----AACGCCACGCGGTAACGTA------AC--GCGCTGTGCCGCACCGCTGCGTATASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
......................................................................................................................................................................................................................................................................................................................................................AGACGACAA--CGG----AACGCC................................................1818.00880000
.................................................................................................................................................................................................................................................................................................................................................................................CGGTAACGTA------AC--GCGCTGTGCC...............2212.00220000
.......................................................................................................................................................................................................................................................................................................................................................................................CGTA------AC--GCGCTGTGCCGCACCG.........2211.00110000
............................................................................................................................................................................................................................................................................................................................................................................CCACGCGGTAACGTA------AC--G........................1811.00100010
..................................................................................................................................................................................................................................................................................................................................................................................GGTAACGTA------AC--GCGCTGTG.................1911.00100001
.............................................................................................................................................................................................................................................................................................................................................................AA--CGG----AACGCCACGCGGT.........................................1811.00100010
...................................................................................................................................................................................................................................................................................................................................................GACAGACGACAA--CGG----AACGCCA...............................................2211.00100010
...................................................................................................................................................................................................................................................................................................................................................GACAGACGACAA--CGG----AACGCCACGC............................................2511.00100010
.......................................................................................................................................................................................................................................................................................................................................................................................CGTA------AC--GCGCTGTGCCGCACCGCTG......2511.00100010
droVir3
--------------------------------------------------------------GAT--CG--T-TTTGTGGATGTCATTCGAATAGA------------CAGCGC--------TCTCTCT--------------CA---TCTCGGTCTCTCCCTCTCTCACACA--------------------------------------CAC---TC-A-CACATGCGTACAC--ACG----------T------TGCGGT--------C-GCAC---GGCAAATTGAAA-------------------CGAAAAATATTTTTAAATTGATTTCAAACAACGACACGAAACGTG---GAAGTC-A-AG-------AC----AAACGCGAGCGG----ACGACGC------GTSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
........................................................................................................................................................................................................................................................................................................................................................................AAGTC-A-AG-------AC----AAACGCGAGCGG----ACGA...........2611.001000000000000000001000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................G-------AC----AAACGCGAGCGG----ACG............1811.001000000000000000000000000000010000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................CGAAACGTG---GAAGTC-A-AG-------AC----AAACGC.........................2611.001001000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................GAAGTC-A-AG-------AC----AAACGCGAG......................2011.001000000000000000000000000000000000000000000000000000000000000100
..........................................................................................................................................................................................................................................................................................................................................................................GTC-A-AG-------AC----AAACGCGAGCGG----ACGACG.........2611.001000000000000000000100000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................G-------AC----AAACGCGAGCGG----ACGACGC------G.2311.001000000000000000000000000000000000000000000000000000000000000010
..........................................................................................................................................................................................................................................................................................................................................................................GTC-A-AG-------AC----AAACGCGAGCGG----ACGA...........2411.001000000000000001000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................AG-------AC----AAACGCGAGCGG----ACG............1911.001000000000000000000000000000010000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................GATTTCAAACAACGACACG.................................................................1911.001000000000000000000000000000001000000000000000000000000000000000
droMoj3
--------------------------------------------------------------GAT--CG--C-TTTGTGGATGTCATTCGAATAAGCAGCGATG----CGGCTC--------TCCCTCT--CTA--------------TCTCACTCT--------CTCACATA----CACC------------------------------------TATA-CATATACACACAC--ACA----------T------GACGCCGT------C-GTAA---GGCGAATTGAAA------------------CGAAAAAATATTTTTAAATTGATTTCAAACAACGACACGAAACGTG---AAAGAC-A-AG-------AC----AAACGAGAGCGG---------AC------GASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.......................................................................................................................................................................................................................................................................................................................................................................AAAGAC-A-AG-------AC----AAACGAGAGC.....................2112.002000011
.........................................................................................................................................................................................................................................................................................................................................................CACGAAACGTG---AAAGAC-A-AG-------AC----AAACGAC........................2911.001000010
...............................................................................................................................................................................................................................................................................................................................................................ACGTG---AAAGAC-A-AG-------AC----AAACGAGAGCG....................2711.001000010
.............................................................................................................................................................................................................................................................................................................................................................AAACGTG---AAAGAC-A-AG-------AC----AAAC...........................2211.001000010
...................................................................................................................................................................................................................................................................................................................................................................G---AAAGAC-A-AG-------AC----AAACGAGAGC.....................2211.001000010
.......................................................................................................................................................................................................................................................................................................................................................................AAAGAC-A-AG-------AC----AAACGAGA.......................1911.001000010
droGri2
A-CTTGGGGGTTGAGTTTGTTCCACAAGCAAGCAGAGAAC------ACAT--AAAACGTGCACAGATCA--T-TTTGTGGATGTCATTCGAATAAGTACCGTC-----TCTGCC----CCTCTCTCTCT--CTCACT------TGCTATCCTCATC--------------TCG--------------------G----------------------------TCTCTCCCTGCCT--GTG----------T------AGTTCTCA-----------------CAAATTGAAACGAA-------------AAACAAAAATATTTTTAAATTGATTTCAAACAACGACGAAGC--GCA----GAGCA-AGCA-------AG----ACACA--------AACAAGCGGC------ACSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/19/2015 at 02:39 PM