ID:

dsi_15615

 Coordinate:

2r:10768654-10768803 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-9.3 -9.0 -8.5

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

TCGTCGTCGGCGAGCGAATTCGGTGATTTTATTTCGATTTCGTCGCAGTGCGATATCCCCAACGAAGAAAACATAACGAATAATTGATGAAAAAGTGCTTGAGAGAGACCCCCCCAAACGTATTCGAATTTGTTGTGTACATTTTGGCTTCGAACACAGCCGCAAAAATACCATTACCAATTTCCACTTACTACTACTAGAGAGGAGGCTAGTATTTTGTACGTGCTTTAGAATACATACATACATACCT
*****************************************************************************************.....(((.((((.((........(((((.((((.(((.....))).))))..))))))))))).)))...****************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 SRR553488
RT_0-2 hours eggs
 O001
Testis
 SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 M024
male body		 M053
female body
 SRR553487
NRT_0-2 hours eggs
 SRR1275487
Male larvae		 SRR902008
ovaries
 SRR1275483
Male prepupae
........................................................................................................................................................................................................AGAGGAGGCTAGTATTTTGTA............................. 21 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................TACTAGATAGTAGGCTAG...................................... 18 2 2 3.00 6 0 6 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................TATTTTGTACGTGCTTTAGAATACA............. 25 0 1 3.00 3 0 0 0 0 0 3 0 0 0 0 0 0
.........................................................................................AAAAAGTGCTTGAGAGAGACC............................................................................................................................................ 21 0 1 2.00 2 0 0 0 2 0 0 0 0 0 0 0 0
.....................................................................................................................................TGTGTACATTTTGGCTTCGAACACAGC.......................................................................................... 27 0 1 2.00 2 0 0 0 0 0 1 0 1 0 0 0 0
........................................................................................................................................................................................................AGAGGAGGCTAGTATTTTGTG............................. 21 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................AGAGAGGAGGCTAGTATTTTG............................... 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................CGTGCTTTAGAATACATACATACATACC. 28 0 1 2.00 2 0 0 0 0 0 0 2 0 0 0 0 0
............AGCGAATTCGGTGATTTTATA......................................................................................................................................................................................................................... 21 1 1 2.00 2 0 0 0 0 0 0 0 0 2 0 0 0
..............................................................CGAAGAAAACATAACGAATAA....................................................................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
..................TTCGGTGATTTTATTTCGATTTCGTC.............................................................................................................................................................................................................. 26 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
.............................TATTTCGATTTCGTCGCAGT......................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
..........................................TCGCAGTGCGATATCCCCAACGAAGA...................................................................................................................................................................................... 26 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
......................................................................................ATGAAAAAGTGCTTGAGAGA................................................................................................................................................ 20 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0
...................................GATTTCGTCGCAGTGCGATAT.................................................................................................................................................................................................. 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
..............CGAATTCGGTGATTTTATTTCGATTT.................................................................................................................................................................................................................. 26 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0
..............................ATTTCGATTTCGTCGCAGTGT....................................................................................................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..........................TTTTGTTTCGATTTCGTCGCA........................................................................................................................................................................................................... 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0
......................................................................................................................................................................................................AGAGAGGAGGCTAGTATTTTGT.............................. 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.............................................CAGTACGATATCCCCAACGAA........................................................................................................................................................................................ 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................................AGAGACCCCCCCAAACGTATTCG............................................................................................................................ 23 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................TGTACATTTTGGCTTCGAACACAGCA......................................................................................... 26 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0
.......................................................................................TGAAAAAGTGCTTGAGAGAGAACCC.......................................................................................................................................... 25 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
..........CGAGCGAATTCGGTGATTTTT........................................................................................................................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.............................TATTTCGATTTCGTCGCAGTG........................................................................................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
............................TTATTTCGATTTCGTCGCAGTGCGATA................................................................................................................................................................................................... 27 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
.........................ATTTTATTTCGATTTCGTCGC............................................................................................................................................................................................................ 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................CTAGAGAGGAGGCTGGTATTT................................. 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................ATTTGTTGTGTACATTTTGGCTTCGAA................................................................................................ 27 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
.......................TGATTTTATTTCGATTTCGTC.............................................................................................................................................................................................................. 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
...............................TTTCGATTTCGTCGCAGTGCGTTA................................................................................................................................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
............................TTATTTCGATTTCGTCGCA........................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.............................TATTTCGATTTCGTCGCAGTGCGATA................................................................................................................................................................................................... 26 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0
............................TTATTTCGATTTCGTCGCAGT......................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0
.......................................................................................................................................................................................CCACTTACTACTACTAGAGAG.............................................. 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................TTTTGTACGTGCTTTAGAATACATA........... 25 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
.......................................................................................................................................................................................................GAGAGGAGGCTAGTGTTTTGT.............................. 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.........GCGAGCGAATTCGGTGATTTT............................................................................................................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................ACGTATTCGAATTTGTTGTGT................................................................................................................ 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
.......................................................................................................................................TGTACATTTTGGCGTCGAACT.............................................................................................. 21 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................TTCGAATTTGTTGTGTACATT........................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
................................................................................................................................TTTGTTGTGTACATTTTGGCTTCGAA................................................................................................ 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................AGAGGAGGCTGGTATTTTGTA............................. 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
......................GTGATTTTATTTCGATTTCGT............................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................................AACGAATAATTGATGAAAAA............................................................................................................................................................ 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................GTGTACATTTTGGCTTCGAA................................................................................................ 20 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
............AGCGAATTCGGTGATTTTATT......................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
................................................................................TAATTGATGAAAAAGTGCTTGAGAGAGA.............................................................................................................................................. 28 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
..................................................................................................................................................................................................TACTAGATAGTAGGCTAGA..................................... 19 3 10 0.80 8 0 7 0 0 0 0 0 0 1 0 0 0
.......TGGCGAGCGAATTCGG................................................................................................................................................................................................................................... 16 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................TTTGGCTTCGAACACAGT.......................................................................................... 18 1 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0 0
.................................................................................................................................................................................................GTACTAGATAGTAGGCTAG...................................... 19 3 9 0.44 4 0 4 0 0 0 0 0 0 0 0 0 0
.........GCGGGCGAAGTCGGTGGTTTT............................................................................................................................................................................................................................ 21 3 3 0.33 1 0 0 0 0 0 0 0 0 0 0 0 1
...........................................................................................AAAGCGCTTGAGAGA................................................................................................................................................ 15 1 10 0.20 2 0 0 0 0 0 0 0 0 2 0 0 0
...................................................................................................................................................................................................ACTAGATAGTAGGCTAG...................................... 17 2 5 0.20 1 0 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................TTGCTTGTGAGAGACCCC.......................................................................................................................................... 18 2 7 0.14 1 0 0 0 1 0 0 0 0 0 0 0 0
.......CGGCGAGCGAACGCGGT.................................................................................................................................................................................................................................. 17 2 11 0.09 1 0 1 0 0 0 0 0 0 0 0 0 0
................................................................................................GCTTGTGAGAGGCCCCC......................................................................................................................................... 17 2 11 0.09 1 0 0 0 1 0 0 0 0 0 0 0 0
...........................................................................................AAAGTGATTGAGAGGGAGCC........................................................................................................................................... 20 3 11 0.09 1 0 0 0 1 0 0 0 0 0 0 0 0
.............................................................................................................CCCCCCTAACGAATCCGA........................................................................................................................... 18 3 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0
....................................................................................................................................................................................................CTAGATAGTAGGCTAG...................................... 16 2 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................TACTAGATAGCAGGCT........................................ 16 2 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

AGCAGCAGCCGCTCGCTTAAGCCACTAAAATAAAGCTAAAGCAGCGTCACGCTATAGGGGTTGCTTCTTTTGTATTGCTTATTAACTACTTTTTCACGAACTCTCTCTGGGGGGGTTTGCATAAGCTTAAACAACACATGTAAAACCGAAGCTTGTGTCGGCGTTTTTATGGTAATGGTTAAAGGTGAATGATGATGATCTCTCCTCCGATCATAAAACATGCACGAAATCTTATGTATGTATGTATGGA
******************************************************************************************.....(((.((((.((........(((((.((((.(((.....))).))))..))))))))))).)))...***************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 O001
Testis
 SRR553485
Chicharo_3 day-old ovaries
 M024
male body		 SRR553487
NRT_0-2 hours eggs
 M023
head
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR902008
ovaries
 GSM343915
embryo
 SRR553488
RT_0-2 hours eggs
..........................................AGCGTCACGCTATAGGGGTTG........................................................................................................................................................................................... 21 0 1 4.00 4 0 0 2 0 0 1 0 0 0 1 0
...................................................CTATAGGGGTTGCTTCTTTTG.................................................................................................................................................................................. 21 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0
........................................................GGGGTTGCTTCTTTTGTATTG............................................................................................................................................................................. 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................CGAAGCTTGGGTCGGCGTTTT................................................................................... 21 1 1 2.00 2 0 0 0 1 1 0 0 0 0 0 0
...............................................................................................................................................................................TGGTTAAAGGTGAATGATGAT...................................................... 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
...........................................GCGTCACGCTATAGGGGTTGCTT........................................................................................................................................................................................ 23 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0
.GCAGCAGCCGCTCGCTTAAGC.................................................................................................................................................................................................................................... 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
........................................................................................................CTCTGGGGGGGTTTGCATAAG............................................................................................................................. 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.....................................................ATAGGGGTTGCTTCTTTTG.................................................................................................................................................................................. 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
..................................................GCTATAGGGGTTGCTTCTTTT................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................TATGGTAATGGTTAAAGGTGA.............................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
............................................................................................TTCACGAACTCTCTCTGGG........................................................................................................................................... 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................................TTGTGTCGGCGTTTTTATGGT............................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.......................................................AGGGGTTGCTTCTTTTGTATT.............................................................................................................................................................................. 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
..............................................................................................................................................................................ATGGTTAAAGGTGAATGATGA....................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
....................................................TTTTGGGGTTGCTTCTTTTGTATT.............................................................................................................................................................................. 24 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................ATTTTTATGGTAATGGTTAAAG.................................................................. 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...................................................TTTTAGGGGTTGCTTCTTTTGTA................................................................................................................................................................................ 23 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.................................................CGCTATAGGGGTTGCTTCTT..................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..............................................TTACGCTATAGGGGTTGCTTCTT..................................................................................................................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................TTTGTCGGCGTTTTTATGGT............................................................................. 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
............................................................................GCTTATTAACTACTTTTTCACGA....................................................................................................................................................... 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.....................................................ATAGGGGTTGCTTCTTTTGTA................................................................................................................................................................................ 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
................................................................................................................................................ACCGAAGCTTGTGTCGGCGT...................................................................................... 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.....................................................ATTTGGGTTGCTTCTTTTGTATTGC............................................................................................................................................................................ 25 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..................................................GCTATAGGGGTTGCTTCTTT.................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..........................................................GGTTGCTTCTTTTGTATTGCT........................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................GTCGGCGTTTTTATGGTAATG......................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.............................................GTCACGCTATAGGGGTTGCTT........................................................................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
....GCAGCCGCTCGCTTAAGCCAC................................................................................................................................................................................................................................. 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
......................................................TAGGGGTTGCTTCTTTTGTAT............................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................TGGTTAAAGGTGAATGGTGAT...................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................TGAATGATGATGATCTCTCCT............................................ 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
..................AAGCCACTAAAATAAAGCTAA................................................................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................ATGATGATCTCTCCTCCGA........................................ 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................GGTAATGGTTAAAGGTGAAT............................................................ 20 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0
...................................................................................................................................................GAAGCTTGTGTCGGCGTTTTTT................................................................................. 22 1 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0
................................................................................................................................................................................GGTTGAAGGTGAATGATGAT...................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
................................................TCGCTATAGTGGTTGCTTCTTT.................................................................................................................................................................................... 22 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
..................................................................................................................................................CGAAGCTTGTGTCGGCGTTT.................................................................................... 20 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
..........................................................................TTGCTTATTAACTACTTTTTC........................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0
..............................................................................................................................................................................................GATGATGATCTCTCCTCCGAT....................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.........................................................GGGTTGCTTCTTTTGTATT.............................................................................................................................................................................. 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.................................................................................................................GGTTCGCATAAGCTTAAAC...................................................................................................................... 19 1 2 0.50 1 0 0 0 0 0 0 1 0 0 0 0
..........................................................................................................TTTGGGGGGTTTGCATAAGC............................................................................................................................ 20 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
................................................ACGCAATAGGGGGTGCT......................................................................................................................................................................................... 17 2 11 0.18 2 0 0 0 0 1 0 0 0 0 0 1
..................................................................CTCTTGTATTGCTCACTAAC.................................................................................................................................................................... 20 3 12 0.08 1 0 0 0 0 0 0 1 0 0 0 0
..............................................................................................................................................................................................GAAGATGCTCTCTCCT............................................ 16 2 17 0.06 1 0 0 1 0 0 0 0 0 0 0 0
............................................................................................................................................................................................CTGAAGATGCTCTCTCCT............................................ 18 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2r:10768604-10768853 + dsi_15615 TCGTCGTCGGCGAGCGAATTCGGTGATTTTAT---TTCGATTTCGTCGCAG-----T-G-----CGATAT--CC--CC---------------------------------------------------------AACGAAGA-------------AAAC---ATAAC-GAATAATTGATGA----------------------AAAAGTG---------------------CTTGAG-AGAGA-CCCCCCCAAACGTA-----TTCG------------------AATTTGTTGTG---TACATT--T-------TGG-CT-TCGA---AC----ACAGCCGCAAA------------AATACCATTACCAA--TTTCCACTTACTACTACTAGAGAGGAGGCTAGTATTTTGTACGTGCTTTAGA-ATACATAC-----ATACATACCT
droSec2 scaffold_1:7569194-7569443 + TCGTCGTCGGCGAGCGAATTCGGTGATTTTAT---TTCGATTTCGTCGCAG-----T-G-----CGATAT--CC--CC---------------------------------------------------------AACGAAGA-------------AAAC---ATAAC-GAATAATTGATGA----------------------AAAAGTG---------------------CTTGAA-AGAGA-CCCCCCCAAACGTA-----TTCG------------------AATTTGTTGTG---TACATT--T-------TGG-CT-TCGA---AC----ACAGCCTCAAA------------AATACCATTACCAA--TTTCCACTTACTACTACTAGAGAGGAGGCTAGTATTTTGTACGTGCTTTAGA-ATACATAC-----ATACATACCT
dm3 chr2R:10061557-10061806 + TCGTCGTCGGCGAGCGAATTCGGTGATTTTAT---TTCGATTTCGTCGCAG-----T-G-----CGATAT--CC--CC---------------------------------------------------------AACGAAGA-------------AAAC---ATAAC-GAATAATTGATGA----------------------AAAAGTG---------------------CTTGAG-AGAGA-CCCCCCCAAACGTA-----TTCG------------------AATTTGTTGTG---TACATT--T-------TGG-CT-TCGA---AC----ACAGCCGCAAA------------AATACCATTACCAA--TTTCCACTTACTACTACTAGAGAGGAGGATAGTATTTTGTACGTGCTTTAGA-ATACATAC-----ATACATACCT
droEre2 scaffold_4845:15776183-15776428 - TCGTCGTCGGCGAGCGAATGCGGTGATTTTAT---TTCGATTTCGTCGCAG-----T-G-----CGATAT--AT--CA--C------------------------------------------------------AA-GAAGA-------------A-AC---CTAAC-GAATA-TTGATGA----------------------AAAAGTG---------------------CTTGTT-G--GA-CCCCCCCAAACGTA-----TTTG------------------AATTTGTTGTG---TACATT--T-------TGG-CT-TCGA---AC----ACAGCCGCAAA------------AATACCATTACCAA--TTTCCACTTACTACTACTAGAGAGGAGGCTAGTATTTTGTACGTGCTTTAGA-ATACATAC-----ATACATACCT
droYak3 2R:9997741-9997987 + TCGTCGTCGGCGAGCGAATGCGGTGATTTTAA---TTCGATTTCGTCGCAG-----T-G-----CGATATATCC--CC---------------------------------------------------------AA-GAAGA-------------A-AC---CTAAC-GAATA-TTGATGA----------------------AAAAGTG---------------------CTTGTG-G--GA-CCCCCCCAAACGTA-----TTTG------------------AATTTGTTGTG---TACATT--T-------TGG-CT-TCGA---AC----ACAGCCGCAAA------------AATACCATTACCAA--TTTCCACTTACTACTACTAGAGAGGAGGCTAGTATTTTGTACGTGCTTTAGA-ATACATAC-----ATACATACCT
droEug1 scf7180000409462:2777727-2777976 - TCGTCGTCGGCGAACGAATGCGGTGATTTT-----TTCGATTTCGTCGCAG-----T-G-----CGATAT--AC--CT--A----------------------------------------------AAATATAA--------AAAAGGAAAA----------------------T---AAA----TAAAAGAAGATAGAAAGAAAAAGTG---------------------CTTGAG-A----AC--C--CAAACGT------TTTGA-----------------AATTTGTTGTG---TATATT--T-------TGG-CT-TCGA---AT----ACAGCCGCAAA------------AATACCATTACCAA--TTTCCACTTACTACTACTAG--AGGAGGCTAGTATTTTGTACGTGCTTTAGA-ATACATAC-----ATACATACCT
droBia1 scf7180000301592:212144-212390 + TCGTCGTCGGCGAACGAATGCGGTGATTTTCT---GTCGATTTCGTCGCAG-----T-G-----CGATAT--CC--CT--AAGAAAA--------------------------------------------------CGAAGG-------------GAAT---A-----------T---AGA----------------------AAAAGTG---------------------CTTGAAAAGAAA-C--C--CAAACG-A-----CTTG------------------AATTTGTTGTG---TATATT--T-------CGGACTATCGA-GCAC----ACAGCCGCAAATAAAA------AAATACCATTACCAA--T-TCCACTTACTACTACTAGAAGGGAGGCTAGTATTTTGTACGTGCTTTAGA-ATACATAC-----ATACATACCT
droTak1 scf7180000414188:41794-42019 + TCGTCGTCGGCGAACGAATGCGGTGATTTT-----TTCGACTTCGTCGCAG-----T-G-----CGATAT--CC--CCCCAAAAAAA--------------------------------------------------TAAAAA-------------------------GAAA---T---AGA----------------------AAAAGTG---------------------CTTGAA-AGA--AC--CCGAAAACG-A-----TTTG------------------AATTTGTTGTG---AAC---------------------------AC----ACAGCCGCAAA----A------AAATACCATTACCAA--TTTCCACTTACTACTACTAGAAAGGAGGCTAGTATTTTGTACGTGCTTTAGA-ATACATAC-----ATACATACCT
droEle1 scf7180000491349:810613-810836 - TCGTTG-CGGCGAACGAATGCGGTGATTTTCGTCG-TGGTTTTCGTCGCAG-----T-G-----CGATAG--CC--CC--C------------------------------------------------------AA---AAA---------------AG---A-----------T---TGA----------------------AAAAGTG---------------------CTTAAA-A----AC--C--CAAACG-A-----CTTG------------------AATTTGTTGTG---TATATT--T-------TGG-CT-TCGA---AC----ACAGCCGCAAA------------AATACCATTACCAA--TTTCCACTTACTACTACTAG--AGGAGGCTAGTATTTTGTACGTGCTTTAGA-ATACATAC-----ATACATACCT
droRho1 scf7180000777200:379666-379891 + TCGTTG-CGGCGAACGAATGCGGTGATTTTCGTCG-TGGTTTTCGTCGCAG-----TTC-----CGATAG--CC--CC---------------------------------------------------------AACAAAAA-------------A-A----T-----------T---TGA-----------------------AAAGTG---------------------CTTAAA-A----AC--C--CAAACG-A-----CTTA------------------AATTTGTTGTG---TATATT--T-------TGG-CT-TCAA---AC----ACAGCCGCAAA------------AATACCATTACCAA--TTTCCACTTACTACTACTAG--AGGAGGCTAGTATTTTGTACGTGCTTTAGA-ATACATAC-----ATACATACCT
droFic1 scf7180000453948:366089-366320 - TCGTCGTCGGCGAACGAATGCGGTGATTT-------TCGTTTTCGTCGCAG-----T-G-----CGATAG--CC--CA---------------------------------------------------------AAAGGAAA---------AATAA-ACCTA-----GAAA---T---AGA------------------CAGTAAAAGTGCG-------------------CTTAAA-A-----ATCCCCAAAACG-A-----T---------------------------TTGTG---TATATT--T-------TGG-CT-GCGA---AC----ACAGCCGCAAA------------AATACCATTACCAA--TTTCCACTTACTACTACTAG--AGGAGGCTAGTATTTTGTACGTGCTTTAGA-ATACATAC-----ATACATACCT
droKik1 scf7180000302385:189858-190107 + TCGTCGTCGGCGGACGAATGCGGTGATTTTCGTTA-GCGTTTTCGTCGCAG-----T-G-----CGAT----CC--CC----------------------------------------------------------TCGAAAC-------------ACAC---A-----------T---TGA-----------------------AAAGTGCCAATATAACC---AA------ACG---AGAGA-C----CAAAACG-AAACAAATCGAAATATTA-------------TTGTTGTGTTGTATATTGCT-------CGG-C--TCGA---AC----ACAGCCGCAA-------------ATTACCATTACCAA--TTTCCACTTACTACTACTAGAGAGGAGGCTAGTATTTTGTACGT---TTAGA-ATACATAC-----ATACATACCT
droAna3 scaffold_13266:5859329-5859581 - TCGTCGTTGCC---------------------------------GCAGCAG-----T-G-----CGCGAT--CCCCCC--CAGAAAAGTGTATTTAGAACATCGCAGTGGCATCATCGAACCAACAAAAATTTTA--------AAACTGAAAA----------------------C---AGA----------------------AAAAGCG---------------------AGAAAA-A-----------AAAAAG-A-----AAAT------------------AAATTGTTGTG---C--ATT--G-------TTG-CC-TCGT---AT----ACAGGCGCAAATTA-C------GATTACCATTACCAATATTCCCACTTACTACTACTAG--AGGAGGCTAGTATTTTGTACGTGCTTTTGA-ATACATAC-----ATACACACCT
droBip1 scf7180000395839:17652-17912 - TCGTTGC---------------------------------------CGCAG-----T-G-----CGCGAT--CC--CCC-CAGAAAAGTGTAT-TAGAACATCGCAGTGGC------GAAGC----------------AGAAAAAACTGAAAA----------------------C---AGA-----------------------AAAGCGTGAAAATATCGTCGGAAAGAGCACGAATC-----------GAAACG-A----------AAAACTACAAA------AAATTGTTGTG---CA--TT--C-------T-G-CC-TCGT---ACATGTACAGGCGCAAATTA-C------GATTACCATTACCAAT-ATTCCACTTACTACTACTAG--AGGAGGCTAGTATTTTGTACGTGCTTTAGA-ATACATAC-----ATACACACCT
dp5 3:16290152-16290306 + TCGTCGTCGACGA-CGAAT---------------------TTTCGTCGCAG-----T-G-----CGAT----CC--CA----------------------------------------------------------A------------------------------------------------GTGAA---------------AA-----------------------------------------------------------------ATAATT--------AAATTGTTGTG---TG--TTGTT-------CTG-C---------AC----AA----------TA-CCAACACCATTACCATTACCG---TTTGCACTTACTACTACTAG--AGGAGGCTAGTATTTTGTACGTGATTTA--------------------ATACC-
droPer2 scaffold_4:474869-475023 - TCGTCGTCGACGA-CGAAT---------------------TTTCGTCGCAG-----T-G-----CGAT----CC--CA----------------------------------------------------------A------------------------------------------------GTGAA---------------AA-----------------------------------------------------------------ATAATT--------AAATTGTTGTG---TG--TTGTT-------CTG-C---------AC----AA----------TA-CCAACACCATTACCATTACCG---TTTGCACTTACTACTACTAG--AGGAGGCTAGTATTTTGTACGTGATTTA--------------------ATACC-
droWil2 scf2_1100000004513:1914863-1914911 - --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGAGGCTAGTATTTTGTACGTGATTTATAAATAAA--AATACCAT--ACACCT
droVir3 scaffold_12875:17659620-17659761 - TCGTCGC-----------------------------TCGTTTTCGTCGCATATTTGTCGCGATCAAAT--------------------------------------------------------------------A------------------------------------------------GTGAA---------------AA-----------------------------AG-AGAGA--------------------------------------------AATATT-----GCAAATTGCATCAAAAAC-G-CG-ACGT---CGACG------------------------------------------------------TACAGC--AGGAGGCTAGTATTTTGTACGTGATTTTGT-ATAACTAC-----ATACATA--T
droMoj3 scaffold_6496:11284053-11284209 - TCGTCGCCGT-------ACTCGTTG----------TTCGTTTTCGTCGCATATTTGTCG-----CGAT----CA--AA----AAT---------------------------------------------------A------------------------------------------------GTGAA---------------AA-----------------------------------------------------------------AAGAGA--------GAAATATT-----GCAAATTGCATTCAAAAC-G-CG-ACGT---TGACG------------------------------------------------------TACAGC--AGGAGGCTAGTATTTTGTACGTGATTTTGT-ATAACTAC-----ATACATA--T
droGri2 scaffold_15245:14023415-14023580 + TCGTCGC-----------------------------TCGTTTTCGTCGCATATTTGTCG-----CGATAA--AA--TA---------------------------------------------------------AAAAAAAA-------------A------------------A---AGAAAAGTGAA---------------AA-----------------------------AA-G-----------------------------------AAAAAAAATATA---TATT-----GCAAATTGCATC-TAAAT-G-CG-ACGTT--TGACG------------------------------------------------------TACAGC--AGGAGGCTAGTATTTTGTACGTGATTTTGT-ATAAATAC-----ATATACATAT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
TCGTCGTCGGCGAGCGAATTCGGTGATTTTAT---TTCGATTTCGTCGCAG-----T-G-----CGATAT--CC--CC---------------------------------------------------------AACGAAGA-------------AAAC---ATAAC-GAATAATTGATGA----------------------AAAAGTG---------------------CTTGAG-AGAGA-CCCCCCCAAACGTA-----TTCG------------------AATTTGTTGTG---TACATT--T-------TGG-CT-TCGA---AC----ACAGCCGCAAA------------AATACCATTACCAA--TTTCCACTTACTACTACTAGAGAGGAGGCTAGTATTTTGTACGTGCTTTAGA-ATACATAC-----ATACATACCTSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...........................................................................................................................................................................................................................................................................................................................................................................................................AGAGGAGGCTAGTATTTTGTA...................................2113.00300000000000003000
.......................................................................................................................................................................................................................................................................................................................................................................................................................TATTTTGTACGTGCTTTAGA-ATACA..................2513.00300000003000000000
.....................................................................................................................................................................................A----------------------AAAAGTG---------------------CTTGAG-AGAGA-CC............................................................................................................................................................................................................2112.00200000000002000000
.....................................................................................................................................................................................................................................................................................................TGTG---TACATT--T-------TGG-CT-TCGA---AC----ACAGC..............................................................................................................2712.00200010001000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................AGAGGAGGCTAGTATTTTGTG...................................2112.00200000000000002000
.........................................................................................................................................................................................................................................................................................................................................................................................................AGAGAGGAGGCTAGTATTTTG.....................................2112.00200000000000002000
................................................................................................................................................................................................................................................................................................................................................................................................................................CGTGCTTTAGA-ATACATAC-----ATACATACC.2812.00202000000000000000
............AGCGAATTCGGTGATTTTAT---A...............................................................................................................................................................................................................................................................................................................................................................................................................................2112.00200000000200000000
.........................................................................................................................................CGAAGA-------------AAAC---ATAAC-GAATAA....................................................................................................................................................................................................................................................................................2111.00100001000000000000
..................TTCGGTGATTTTAT---TTCGATTTCGTC....................................................................................................................................................................................................................................................................................................................................................................................................................2611.00101000000000000000
.............................TAT---TTCGATTTCGTCGCAG-----T-.........................................................................................................................................................................................................................................................................................................................................................................................................2011.00100001000000000000
.............................................TCGCAG-----T-G-----CGATAT--CC--CC---------------------------------------------------------AACGAAGA-------------.......................................................................................................................................................................................................................................................................................................2611.00100000010000000000
..................................................................................................................................................................................ATGA----------------------AAAAGTG---------------------CTTGAG-AGA.................................................................................................................................................................................................................2011.00100010000000000000
......................................GATTTCGTCGCAG-----T-G-----CGATAT--...........................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000001000000
..............CGAATTCGGTGATTTTAT---TTCGATTT........................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100010000000000000
..............................AT---TTCGATTTCGTCGCAG-----T-G-----T..................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000000001000
.........................................................................................................................................................................................................................................................................................................................................................................................................AGAGAGGAGGCTAGTATTTTGT....................................2211.00100000000000001000
...............................................................................................................................................................................................................................................AGAGA-CCCCCCCAAACGTA-----TTCG------------------.....................................................................................................................................................................2311.00100001000000000000
.......................................................................................................................................................................................................................................................................................................TG---TACATT--T-------TGG-CT-TCGA---AC----ACAGCA.............................................................................................................2611.00100000000000010000
..........CGAGCGAATTCGGTGATTTTT....................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000000001000
.............................TAT---TTCGATTTCGTCGCAG-----T-G-----...................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000000001000
............................TTAT---TTCGATTTCGTCGCAG-----T-G-----CGATA..............................................................................................................................................................................................................................................................................................................................................................................................2711.00100000010000000000
.........................ATTTTAT---TTCGATTTCGTCGC..................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000001000000
...............................................................................................................................................................................................................................................................................................ATTTGTTGTG---TACATT--T-------TGG-CT-TCGA---A........................................................................................................................2711.00100000010000000000
.......................TGATTTTAT---TTCGATTTCGTC....................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100001000000000000
............................TTAT---TTCGATTTCGTCGCA.................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100001000000000000
.............................TAT---TTCGATTTCGTCGCAG-----T-G-----CGATA..............................................................................................................................................................................................................................................................................................................................................................................................2611.00100010000000000000
............................TTAT---TTCGATTTCGTCGCAG-----T-.........................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000100000000
..........................................................................................................................................................................................................................................................................................................................................................................................CCACTTACTACTACTAGAGAG....................................................2111.00100001000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................TTTTGTACGTGCTTTAGA-ATACATA................2511.00100000010000000000
.........GCGAGCGAATTCGGTGATTTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000000001000
..............................................................................................................................................................................................................................................................ACGTA-----TTCG------------------AATTTGTTGTG---T......................................................................................................................................................2111.00100000000001000000
........................................................................................................................................................................................................................................................................TTCG------------------AATTTGTTGTG---TACATT--...............................................................................................................................................2111.00101000000000000000
................................................................................................................................................................................................................................................................................................TTTGTTGTG---TACATT--T-------TGG-CT-TCGA---A........................................................................................................................2611.00100000000010000000
......................GTGATTTTAT---TTCGATTTCGT.....................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000000001000
.....................................................................................................................................................................AAC-GAATAATTGATGA----------------------AAAA...................................................................................................................................................................................................................................................2011.00100001000000000000
......................................................................................................................................................................................................................................................................................................GTG---TACATT--T-------TGG-CT-TCGA---A........................................................................................................................2011.00100000010000000000
............AGCGAATTCGGTGATTTTAT---T...............................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000000001000
............................................................................................................................................................................TAATTGATGA----------------------AAAAGTG---------------------CTTGAG-AGAGA-..............................................................................................................................................................................................................2811.00100000001000000000
.................................................................................................................................................................................................................................................................................................................T--T-------TGG-CT-TCGA---AC----ACAGT..............................................................................................................1820.50100000010000000000
droSec2
TCGTCGTCGGCGAGCGAATTCGGTGATTTTAT---TTCGATTTCGTCGCAG-----T-G-----CGATAT--CC--CC---------------------------------------------------------AACGAAGA-------------AAAC---ATAAC-GAATAATTGATGA----------------------AAAAGTG---------------------CTTGAA-AGAGA-CCCCCCCAAACGTA-----TTCG------------------AATTTGTTGTG---TACATT--T-------TGG-CT-TCGA---AC----ACAGCCTCAAA------------AATACCATTACCAA--TTTCCACTTACTACTACTAGAGAGGAGGCTAGTATTTTGTACGTGCTTTAGA-ATACATAC-----ATACATACCTSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.................................................................................................................................................................................................................................................................................................................................................................................................CTACTACTAGAGAGGAGGCTAGT...........................................2312.0020110
............................................................................................................................................................................TAATTGATGA----------------------AAAAGTG---------------------CTTG.......................................................................................................................................................................................................................2111.0011000
..................................................................................................................................................................................ATGA----------------------AAAAGTG---------------------CTTGAA-AGAG................................................................................................................................................................................................................2111.0010100
...............................................................................................................................................................................................................................................................................................................................................................................................TACTACTACTAGAGAGGAGGCTAG............................................2411.0010001
................................................................CGATAT--CC--CC---------------------------------------------------------AACGAAGT-------------.......................................................................................................................................................................................................................................................................................................1811.0010001
................................................................................................................................................................................................................................................................................................................................................................................................ACTACTACTAGAGAGGAGGCTAGT...........................................2411.0010100
......................................................................................................................................................................................................................................................................................................GTG---TACATT--T-------TGG-CT-TCGA---A........................................................................................................................2011.0010001
.................ATTCGGTGATTTTAT---TTCGAT..........................................................................................................................................................................................................................................................................................................................................................................................................................2111.0011000
...................................................................................................................................................................................................................................................................................................................................................................................................ACTACTAGAGAGGAGGCTAGT...........................................2111.0010100
...................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTTAGA-ATACATAC-----ATAC......2011.0011000
..............................AT---TTCGATTTCGTCGCAG-----T-G-----C..................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100
.....GTCGGCGAGCGAATTCGGTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0011000
dm3
TCGTCGTCGGCGAGCGAATTCGGTGATTTTAT---TTCGATTTCGTCGCAG-----T-G-----CGATAT--CC--CC---------------------------------------------------------AACGAAGA-------------AAAC---ATAAC-GAATAATTGATGA----------------------AAAAGTG---------------------CTTGAG-AGAGA-CCCCCCCAAACGTA-----TTCG------------------AATTTGTTGTG---TACATT--T-------TGG-CT-TCGA---AC----ACAGCCGCAAA------------AATACCATTACCAA--TTTCCACTTACTACTACTAGAGAGGAGGATAGTATTTTGTACGTGCTTTAGA-ATACATAC-----ATACATACCTSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...........................................................................................................................................................................ATAATTGATGA----------------------AAAAGTG---------------------CTT........................................................................................................................................................................................................................2118.0080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000100000000000000000000000000000000000000001000000000000000000000000000000000
..................................................................................................................................................................................ATGA----------------------AAAAGTG---------------------CTTGAG-AGAG................................................................................................................................................................................................................2117.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000010000000000000000000000000000000000000000000000000000001101000000010000000000000000000000000
...............................T---TTCGATTTCGTCGCAG-----T-G-----CGATA..............................................................................................................................................................................................................................................................................................................................................................................................2416.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000010000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
......................................GATTTCGTCGCAG-----T-G-----CGATAT--...........................................................................................................................................................................................................................................................................................................................................................................................2115.0050000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000100000000000001000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
....................................TCGATTTCGTCGCAG-----T-G-----CGAT...............................................................................................................................................................................................................................................................................................................................................................................................2115.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000200100000000000000000000000000000000000000000000000000000
..............................AT---TTCGATTTCGTCGCAG-----T-G-----C..................................................................................................................................................................................................................................................................................................................................................................................................2115.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000100000000000000000
...............................................................................................................................................................................................................................................................................................ATTTGTTGTG---TACATT--T-------TGG-C..................................................................................................................................2115.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000000000000000000000000000000000000000100000000010000100000000000000000000000000
..............................AT---TTCGATTTCGTCGCAG-----T-G-----CGAT...............................................................................................................................................................................................................................................................................................................................................................................................2415.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................TTCG------------------AATTTGTTGTG---TACATT--...............................................................................................................................................2115.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000001000000000000000000000000000000000000000000000000000010000000000001000000000000000000000000000000000
.............................TAT---TTCGATTTCGTCGCAG-----T-G-----CGATA..............................................................................................................................................................................................................................................................................................................................................................................................2615.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000301000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
...................................TTCGATTTCGTCGCAG-----T-G-----CGA................................................................................................................................................................................................................................................................................................................................................................................................2115.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000100000000000000000100000000000000100000000000000100000
.......................................................................................................................................................................................................................................................CCCCCAAACGTA-----TTCG------------------AATTTGTTG............................................................................................................................................................2515.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................AGTATTTTGTACGTGCTTTAG.........................2115.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................TAAC-GAATAATTGATGA----------------------AAAAGTG---------------------CT.........................................................................................................................................................................................................................2614.0040000000000000000000000100000000000000000000000000000000000000000000000000000000000100010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................TGTTGTG---TACATT--T-------TGG-CT-TC..............................................................................................................................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................TAATTGATGA----------------------AAAAGTG---------------------CTTGAG-AGAG................................................................................................................................................................................................................2714.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000001000000
.........................ATTTTAT---TTCGATTTCGTCGC..................................................................................................................................................................................................................................................................................................................................................................................................................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000100000000000000000000000000000100000
..............................................................................................................................................................................................................AAGTG---------------------CTTGAG-AGAGA-CCCCC.........................................................................................................................................................................................................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000100000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000010
.................................................................................................................................................................................GATGA----------------------AAAAGTG---------------------CTTGAG-AGA.................................................................................................................................................................................................................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000100000000000000000
..............................................................................................................................................................................ATTGATGA----------------------AAAAGTG---------------------CTTGAG-....................................................................................................................................................................................................................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000100000010100000000000000000000000000
..............................................................................................................................................................................................................................................................................................AATTTGTTGTG---TACATT--T-------.......................................................................................................................................1814.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............GAATTCGGTGATTTTAT---TTCGATTTCG......................................................................................................................................................................................................................................................................................................................................................................................................................2714.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................ATAT--CC--CC---------------------------------------------------------AACGAAGA-------------AAAC---AT..............................................................................................................................................................................................................................................................................................2213.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................TAGTATTTTGTACGTGCTTTAGA-A......................2413.0030000000000000000000000000000000000000000000200000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....CGTCGGCGAGCGAATTCGGTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.........................................................................................................................................................................................................................................................................TCG------------------AATTTGTTGTG---TACATT--T-------.......................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................ACGTA-----TTCG------------------AATTTGTTGTG---T......................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
......................................GATTTCGTCGCAG-----T-G-----CGAT...............................................................................................................................................................................................................................................................................................................................................................................................1913.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................T---TTCGATTTCGTCGCAG-----T-G-----CGA................................................................................................................................................................................................................................................................................................................................................................................................2213.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000
.............................TAT---TTCGATTTCGTCGCAG-----T-G-----...................................................................................................................................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000001000000000000000
...................................................................................................................................................................................TGA----------------------AAAAGTG---------------------CTTGAG-AGAGA-..............................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000
.........................................................................C--CC---------------------------------------------------------AACGAAGA-------------AAAC---ATAAC-G.........................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000
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droEre2
TCGTCGTCGGCGAGCGAATGCGGTGATTTTAT---TTCGATTTCGTCGCAG-----T-G-----CGATAT--AT--CA--C------------------------------------------------------AA-GAAGA-------------A-AC---CTAAC-GAATA-TTGATGA----------------------AAAAGTG---------------------CTTGTT-G--GA-CCCCCCCAAACGTA-----TTTG------------------AATTTGTTGTG---TACATT--T-------TGG-CT-TCGA---AC----ACAGCCGCAAA------------AATACCATTACCAA--TTTCCACTTACTACTACTAGAGAGGAGGCTAGTATTTTGTACGTGCTTTAGA-ATACATAC-----ATACATACCTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.CGTCGTCGGCGAGCGAATGCGGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................2315.0050000005
TCGTCGTCGGCGAGCGAATGCGGTGATT.......................................................................................................................................................................................................................................................................................................................................................................................................................................2814.0040000004
.................................................................................................................................................................................................................................................................................................................................................................................................CTACTACTAGAGAGGAGGCTAGT...........................................2312.0020000020
........................................................................................................................................................................................................................................................................................................G---TACATT--T-------TGG-CT-TCGA---AC----AC.................................................................................................................2111.0010000100
...................................................................................................................................................................................................................................................................................................................................................................................................ACTACTAGAGAGGAGGCTAGT...........................................2111.0010100000
..................................................................................................................................................................................................................................................................A-----TTTG------------------AATTTGTTGTG---TACATT--T-------TGG-...................................................................................................................................2611.0010000100
....................CGGTGATTTTAT---TTCGATTTC.......................................................................................................................................................................................................................................................................................................................................................................................................................2111.0011000000
........................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTGTACGTGCTTTAGA-ATAC...................2311.0010000010
.....................................................................................................................................................................................A----------------------AAAAGTG---------------------CTTGTT-G--GA-CCCC..........................................................................................................................................................................................................2111.0010000100
............................................................................................................................................................................TA-TTGATGA----------------------AAAAGTG---------------------CTTGTT-....................................................................................................................................................................................................................2211.0010000010
.............................................................................................................................................................................................................AAAGTG---------------------CTTGTT-G--GA-CCCCC.........................................................................................................................................................................................................2011.0011000000
.............................................................................................................................................................................................................................................................................................................................................................................................CTTACTACTACTAGAGAGGAGGCTAGT...........................................2711.0010000100
..............................................................................................................................................................................................................................................................................................................................G-CT-TCGA---AC----ACAGCCGCAAA------------............................................................................................2011.0010000100
.........................................................................................................................................................................GAATA-TTGATGA----------------------AAAAGTG---------------------CTTGTT-G--.................................................................................................................................................................................................................2611.0010000100
..................................................................................................................................................................................ATGA----------------------AAAAGTG---------------------CTTGTT-G--GA-C.............................................................................................................................................................................................................2111.0010100000
....CGTCGGCGAGCGAATGCGGTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010001000
droYak3
TCGTCGTCGGCGAGCGAATGCGGTGATTTTAA---TTCGATTTCGTCGCAG-----T-G-----CGATATATCC--CC---------------------------------------------------------AA-GAAGA-------------A-AC---CTAAC-GAATA-TTGATGA----------------------AAAAGTG---------------------CTTGTG-G--GA-CCCCCCCAAACGTA-----TTTG------------------AATTTGTTGTG---TACATT--T-------TGG-CT-TCGA---AC----ACAGCCGCAAA------------AATACCATTACCAA--TTTCCACTTACTACTACTAGAGAGGAGGCTAGTATTTTGTACGTGCTTTAGA-ATACATAC-----ATACATACCTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.............................................................................................................................................................................................................AAAGTG---------------------CTTGTG-G--GA-CCCCCCC.......................................................................................................................................................................................................2212.00201100000000
.................................................................................................................................................................................................................................................................................................................................................................................................CTACTACTAGAGAGGAGGCTAGT...........................................2312.00200000020000
........................................................................................................................................................................................................................................................................................................G---TACATT--T-------TGG-CT-TCGA---AC----ACAGC..............................................................................................................2412.00200200000000
........................................................................................................................................................................................................................................................................TTTG------------------AATTTGTTGTG---TACATT--T-------T......................................................................................................................................2311.00100000010000
...........................................................................................................................................................................................................................................................................................................................................................................................CACTTACTACTACTAGAGAGGAGGCTAGT...........................................2911.00110000000000
...............................................................................................................................................................................................................AGTG---------------------CTTGTG-G--GA-CCCCCCCAAAC...................................................................................................................................................................................................2411.00100000010000
.....................................................................................................................................................................................A----------------------AAAAGTG---------------------CTTGTG-G--GA-CCCC..........................................................................................................................................................................................................2111.00100000010000
.........................ATTTTAA---TTCGATTTCGTCGCAG-----T-G-----CG.................................................................................................................................................................................................................................................................................................................................................................................................2711.00110000000000
........................................................................................................................................................................................................................................................................................................G---TACATT--T-------TGG-CT-TCGA---AC----AC.................................................................................................................2111.00100000010000
................................................................................................................................................................................................................................................................................................................................................................................................ACTACTACTAGAGAGGAGGCTAGT...........................................2411.00100100000000
..........................................................................................................................................................................................................................................................................................................................................................................................CCACTTACTACTACTAGAGAGGAGGCT..............................................2711.00100000010000
...............................................................................................................................................................................................................................................................CGTA-----TTTG------------------AATTTGTTGTG---TAC....................................................................................................................................................2211.00101000000000
................................................................................................................................................................................................................................................................................................................................................................................................ACTACTACTAGAGAGGAGGCT..............................................2111.00101000000000
droEug1
TCGTCGTCGGCGAACGAATGCGGTGATTTT-----TTCGATTTCGTCGCAG-----T-G-----CGATAT--AC--CT--A----------------------------------------------AAATATAA--------AAAAGGAAAA----------------------T---AAA----TAAAAGAAGATAGAAAGAAAAAGTG---------------------CTTGAG-A----AC--C--CAAACGT------TTTGA-----------------AATTTGTTGTG---TATATT--T-------TGG-CT-TCGA---AT----ACAGCCGCAAA------------AATACCATTACCAA--TTTCCACTTACTACTACTAG--AGGAGGCTAGTATTTTGTACGTGCTTTAGA-ATACATAC-----ATACATACCTSizeHit CountTotal NormTotal
No Reads
droBia1
TCGTCGTCGGCGAACGAATGCGGTGATTTTCT---GTCGATTTCGTCGCAG-----T-G-----CGATAT--CC--CT--AAGAAAA--------------------------------------------------CGAAGG-------------GAAT---A-----------T---AGA----------------------AAAAGTG---------------------CTTGAAAAGAAA-C--C--CAAACG-A-----CTTG------------------AATTTGTTGTG---TATATT--T-------CGGACTATCGA-GCAC----ACAGCCGCAAATAAAA------AAATACCATTACCAA--T-TCCACTTACTACTACTAGAAGGGAGGCTAGTATTTTGTACGTGCTTTAGA-ATACATAC-----ATACATACCTSizeHit CountTotal NormTotal
No Reads
droTak1
TCGTCGTCGGCGAACGAATGCGGTGATTTT-----TTCGACTTCGTCGCAG-----T-G-----CGATAT--CC--CCCCAAAAAAA--------------------------------------------------TAAAAA-------------------------GAAA---T---AGA----------------------AAAAGTG---------------------CTTGAA-AGA--AC--CCGAAAACG-A-----TTTG------------------AATTTGTTGTG---AAC---------------------------AC----ACAGCCGCAAA----A------AAATACCATTACCAA--TTTCCACTTACTACTACTAGAAAGGAGGCTAGTATTTTGTACGTGCTTTAGA-ATACATAC-----ATACATACCTSizeHit CountTotal NormTotal
No Reads
droEle1
TCGTTG-CGGCGAACGAATGCGGTGATTTTCGTCG-TGGTTTTCGTCGCAG-----T-G-----CGATAG--CC--CC--C------------------------------------------------------AA---AAA---------------AG---A-----------T---TGA----------------------AAAAGTG---------------------CTTAAA-A----AC--C--CAAACG-A-----CTTG------------------AATTTGTTGTG---TATATT--T-------TGG-CT-TCGA---AC----ACAGCCGCAAA------------AATACCATTACCAA--TTTCCACTTACTACTACTAG--AGGAGGCTAGTATTTTGTACGTGCTTTAGA-ATACATAC-----ATACATACCTSizeHit CountTotal NormTotal
No Reads
droRho1
TCGTTG-CGGCGAACGAATGCGGTGATTTTCGTCG-TGGTTTTCGTCGCAG-----TTC-----CGATAG--CC--CC---------------------------------------------------------AACAAAAA-------------A-A----T-----------T---TGA-----------------------AAAGTG---------------------CTTAAA-A----AC--C--CAAACG-A-----CTTA------------------AATTTGTTGTG---TATATT--T-------TGG-CT-TCAA---AC----ACAGCCGCAAA------------AATACCATTACCAA--TTTCCACTTACTACTACTAG--AGGAGGCTAGTATTTTGTACGTGCTTTAGA-ATACATAC-----ATACATACCTSizeHit CountTotal NormTotal
No Reads
droFic1
TCGTCGTCGGCGAACGAATGCGGTGATTT-------TCGTTTTCGTCGCAG-----T-G-----CGATAG--CC--CA---------------------------------------------------------AAAGGAAA---------AATAA-ACCTA-----GAAA---T---AGA------------------CAGTAAAAGTGCG-------------------CTTAAA-A-----ATCCCCAAAACG-A-----T---------------------------TTGTG---TATATT--T-------TGG-CT-GCGA---AC----ACAGCCGCAAA------------AATACCATTACCAA--TTTCCACTTACTACTACTAG--AGGAGGCTAGTATTTTGTACGTGCTTTAGA-ATACATAC-----ATACATACCTSizeHit CountTotal NormTotal
No Reads
droKik1
TCGTCGTCGGCGGACGAATGCGGTGATTTTCGTTA-GCGTTTTCGTCGCAG-----T-G-----CGAT----CC--CC----------------------------------------------------------TCGAAAC-------------ACAC---A-----------T---TGA-----------------------AAAGTGCCAATATAACC---AA------ACG---AGAGA-C----CAAAACG-AAACAAATCGAAATATTA-------------TTGTTGTGTTGTATATTGCT-------CGG-C--TCGA---AC----ACAGCCGCAA-------------ATTACCATTACCAA--TTTCCACTTACTACTACTAGAGAGGAGGCTAGTATTTTGTACGT---TTAGA-ATACATAC-----ATACATACCTSizeHit CountTotal NormTotal
No Reads
droAna3
TCGTCGTTGCC---------------------------------GCAGCAG-----T-G-----CGCGAT--CCCCCC--CAGAAAAGTGTATTTAGAACATCGCAGTGGCATCATCGAACCAACAAAAATTTTA--------AAACTGAAAA----------------------C---AGA----------------------AAAAGCG---------------------AGAAAA-A-----------AAAAAG-A-----AAAT------------------AAATTGTTGTG---C--ATT--G-------TTG-CC-TCGT---AT----ACAGGCGCAAATTA-C------GATTACCATTACCAATATTCCCACTTACTACTACTAG--AGGAGGCTAGTATTTTGTACGTGCTTTTGA-ATACATAC-----ATACACACCTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
....................................................................................................................................................GAAAA----------------------C---AGA----------------------AAAAGCG---------------------AGAA.......................................................................................................................................................................................................................2011.001010000
.....................................................................................................TCGCAGTGGCATCATCGAAC..........................................................................................................................................................................................................................................................................................................................................2011.001010000
TCGTCGTTGCC---------------------------------GCAGCAG-----T-G-----C..................................................................................................................................................................................................................................................................................................................................................................................................2111.001000001
........................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTGTACGTGCTTTTGA-AT.....................2111.001100000
............................................................................................................................................................................................................................................................................................................C--ATT--G-------TTG-CC-TCGT---AT----AC.................................................................................................................1811.001010000
.............................................................................................................................................................................................................AAAGCG---------------------AGAAAA-A-----------AAAAAG-G-----...........................................................................................................................................................................................2020.501010000
droBip1
TCGTTGC---------------------------------------CGCAG-----T-G-----CGCGAT--CC--CCC-CAGAAAAGTGTAT-TAGAACATCGCAGTGGC------GAAGC----------------AGAAAAAACTGAAAA----------------------C---AGA-----------------------AAAGCGTGAAAATATCGTCGGAAAGAGCACGAATC-----------GAAACG-A----------AAAACTACAAA------AAATTGTTGTG---CA--TT--C-------T-G-CC-TCGT---ACATGTACAGGCGCAAATTA-C------GATTACCATTACCAAT-ATTCCACTTACTACTACTAG--AGGAGGCTAGTATTTTGTACGTGCTTTAGA-ATACATAC-----ATACACACCTSizeHit CountTotal NormTotal
No Reads
dp5
TCGTCGTCGACGA-CGAAT---------------------TTTCGTCGCAG-----T-G-----CGAT----CC--CA----------------------------------------------------------A------------------------------------------------GTGAA---------------AA-----------------------------------------------------------------ATAATT--------AAATTGTTGTG---TG--TTGTT-------CTG-C---------AC----AA----------TA-CCAACACCATTACCATTACCG---TTTGCACTTACTACTACTAG--AGGAGGCTAGTATTTTGTACGTGATTTA--------------------ATACC-SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..................................................................................................................................................................................................................................................................................AATT--------AAATTGTTGTG---TG--TTGTT-------C......................................................................................................................................2312.0020000000200
..................................................................................................................................................................................................................................................................................................TGTTGTG---TG--TTGTT-------CTG-C---------AC----...................................................................................................................2011.0010100000000
.........................................................................................................................................................................................................................................................................................................................................................................................TGCACTTACTACTACTAG--AG....................................................2011.0010000010000
........................................................................CC--CA----------------------------------------------------------A------------------------------------------------GTGAA---------------AA-----------------------------------------------------------------ATAATT--------AAATTGTTGTG---.......................................................................................................................................................2911.0010010000000
...............................................................................................................................................................................................................................................................................................AATTGTTGTG---TG--TTGTT-------CTG-...................................................................................................................................2011.0010000001000
..............................................CGCAG-----T-G-----CGAT----CC--CA----------------------------------------------------------A------------------------------------------------GTGAA---------------......................................................................................................................................................................................................................................................2111.0010000100000
.................................................................................................................................................................................................................................................................................................................................................................................................CTACTACTAG--AGGAGGCTAGT...........................................2111.0010000100000
................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTAGTATTTTGTACGTGG..............................2111.0010100000000
................................................................................................................................................................................................................................................................................................ATTGTTGTG---TG--TTGTT-------CTC-...................................................................................................................................1911.0010000000010
................................................................................................................................................................................................................................................................................ATAATT--------AAATTGTTGTG---TG--T..................................................................................................................................................2011.0010000100000
..................T---------------------TTTCGTCGCAG-----T-G-----CGAT----CC--CA----------------------------------------------------------A------------------------------------------------GTGA......................................................................................................................................................................................................................................................................2711.0010100000000
droPer2
TCGTCGTCGACGA-CGAAT---------------------TTTCGTCGCAG-----T-G-----CGAT----CC--CA----------------------------------------------------------A------------------------------------------------GTGAA---------------AA-----------------------------------------------------------------ATAATT--------AAATTGTTGTG---TG--TTGTT-------CTG-C---------AC----AA----------TA-CCAACACCATTACCATTACCG---TTTGCACTTACTACTACTAG--AGGAGGCTAGTATTTTGTACGTGATTTA--------------------ATACC-SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.................................................................................................................................................................................................................................................................................................................................................................................................CTACTACTAG--AGGAGGCT..............................................1811.001100000
..................................................................................................................................................................................................................................................................................AATT--------AAATTGTTGTG---TG--T..................................................................................................................................................1811.001001000
droWil2
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGAGGCTAGTATTTTGTACGTGATTTATAAATAAA--AATACCAT--ACACCTSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droVir3
TCGTCGC-----------------------------TCGTTTTCGTCGCATATTTGTCGCGATCAAAT--------------------------------------------------------------------A------------------------------------------------GTGAA---------------AA-----------------------------AG-AGAGA--------------------------------------------AATATT-----GCAAATTGCATCAAAAAC-G-CG-ACGT---CGACG------------------------------------------------------TACAGC--AGGAGGCTAGTATTTTGTACGTGATTTTGT-ATAACTAC-----ATACATA--TSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...................................................................................................................................................................................................................................................................................................................................ACGT---CGACG------------------------------------------------------TACAGC--AGGAGGCT..............................................2311.001000000000000000100000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................CGACG------------------------------------------------------TACAGC--AGGAGGCTAGT...........................................2211.001000000000000000000000000000000000000000000000000000000000000010
.....GC-----------------------------TCGTTTTCGTCGCATATTT............................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000010000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................GT---CGACG------------------------------------------------------TACAGC--AGGAGGCTAGT...........................................2411.001000000000000000000000000000000000000000000000000000000000001000
.....................................................................................................................................................................................................................................................................................................T-----GCAAATTGCATCAAAAAC-G-CG-ACGT---CG.......................................................................................................................2811.001001000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTGTACGTGATTTTGT-ATAACTAC-----..........2711.001000000000000000000000000000000000000100000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................AGGAGGCTAGTATTTTGTACGTGATT............................2611.001000000000001000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................AGA--------------------------------------------AATATT-----GCAAATTGCATC............................................................................................................................................2111.001000000000000000000000000000010000000000000000000000000000000000
.....................................................TTGTCGCGATCAAAT--------------------------------------------------------------------A------------------------------------------------GTGAA---------------AA-----------------------------.......................................................................................................................................................................................................................2311.001000000000000000000000000000000000000100000000000000000000000000
.................................................................AAT--------------------------------------------------------------------A------------------------------------------------GTGAA---------------AA-----------------------------AG-AGAGA--------------------------------------------...................................................................................................................................................................1811.001000000000000000000000000000000000000000000000000000000000001000
.............................................................................................................................................................................................................................................................................................................................................................................................................AGGAGGCTAGTATTTTGTACGT................................2211.001000000000000000000000000000000000001000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................GC--AGGAGGCTAGTATTTT......................................1811.001000000000000000000000000000010000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................T---CGACG------------------------------------------------------TACAGC--AGGAGGCTA.............................................2111.001000000000000000000000000000000100000000000000000000000000000000
........................................TTTCGTCGCATATTTGTCGCGAT....................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000001000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................G------------------------------------------------------TACAGC--AGGAGGCTAGTAT.........................................2011.001000000000000000000000000000001000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................TTGCATCAAAAAC-G-CG-ACGT---CGAC.....................................................................................................................2411.001000000000000000000000000000000000000000000000000000000000000001
.................................................................................................................................................................................................................................................................................................................................G-ACGT---CGACG------------------------------------------------------TACAGC--AGGAGGCTAGT...........................................2711.001000000000000000001000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................AGGCTAGTATTTTGTACGTGA..............................2111.001000000000000000000000000000000010000000000000000000000000000000
...........................................................................................................................................................................................GAA---------------AA-----------------------------AG-AGAGA--------------------------------------------AATATT-----........................................................................................................................................................1811.001000000000000010000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................GACG------------------------------------------------------TACAGC--AGGAGGCTAGTATT........................................2411.001000000000000000000000000000000000000010000000000000000000000000
................................................................AAAT--------------------------------------------------------------------A------------------------------------------------GTGAA---------------AA-----------------------------AG-AGAGA--------------------------------------------AAT................................................................................................................................................................2211.001000000000000000000000000000000000010000000000000000000000000000
.................................................................AAT--------------------------------------------------------------------A------------------------------------------------GTGAA---------------AA-----------------------------AG-AGAGA--------------------------------------------A..................................................................................................................................................................1911.001000000000000000000000000000000000000000000000000000000000000010
droMoj3
TCGTCGCCGT-------ACTCGTTG----------TTCGTTTTCGTCGCATATTTGTCG-----CGAT----CA--AA----AAT---------------------------------------------------A------------------------------------------------GTGAA---------------AA-----------------------------------------------------------------AAGAGA--------GAAATATT-----GCAAATTGCATTCAAAAC-G-CG-ACGT---TGACG------------------------------------------------------TACAGC--AGGAGGCTAGTATTTTGTACGTGATTTTGT-ATAACTAC-----ATACATA--TSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.....................................................................................................................................................................................................................................................................................................................TTCAAAAC-G-CG-ACGT---TGACG------------------------------------------------------T.............................................................2111.001000001
.........................................TTCGTCGCATATTTGTCG-----C..................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
.................................................................................................................................................................................................................................................................................................................................G-ACGT---TGACG------------------------------------------------------TACAGC--AGGAGG................................................2211.001100000
...TCGCCGT-------ACTCGTTG----------TTCGTTT.........................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
.................................................................................................................................................................................................................................................................................................................................G-ACGT---TGACG------------------------------------------------------TACAGC--AGGAGGC...............................................2311.001000010
droGri2
TCGTCGC-----------------------------TCGTTTTCGTCGCATATTTGTCG-----CGATAA--AA--TA---------------------------------------------------------AAAAAAAA-------------A------------------A---AGAAAAGTGAA---------------AA-----------------------------AA-G-----------------------------------AAAAAAAATATA---TATT-----GCAAATTGCATC-TAAAT-G-CG-ACGTT--TGACG------------------------------------------------------TACAGC--AGGAGGCTAGTATTTTGTACGTGATTTTGT-ATAAATAC-----ATATACATATSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
.........................................................................................................................................................................................................................................................................................................................AAAT-G-CG-ACGTT--TGACG------------------------------------------------------TACA..........................................................2111.00101

Generated: 05/19/2015 at 12:52 PM